Citrus Sinensis ID: 029661

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHccccccccccEEccccccccHHHHHHccccEEEEccccccccccHHHHHHHHHccccEEEEEcccccHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHcccEEEEcccccccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
EEccccccEcccHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEEcccccHHHHccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHcccEEEccHHHHccccHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mdgrfvpnitigplvvdalrpvtdlpldvhlmivepeqrvpdfIKAGADIVSVHCEQSSTIHLHRTLNQIKDLgakagvvlnpatslsaIECVLDVVDLVLIMsvnpgfggqsfIESQVKKISDLRRMCLekgvnpwievdggvgpknAYKVIEAGANALVAGSAVFGAKDYAEAIKGiktskrpqavav
Flexible Loop (DISEMBL)
mdgrfvpnitigplvvdalRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVnpgfggqsfIESQVKKISDLRRMCLEKGvnpwievdggvGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIkgiktskrpqavav
Low Complexity Region (SEG)
MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV
Disordered region (IsUnstruct)
****FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG************
Disordered Region (DISOPRED)
MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK*******
Disordered Region (DISEMBL)
MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK**********
Disordered Region (DISPRO)
MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q43843	280	Ribulose-phosphate 3-epim	N/A	no	1.0	0.678	0.910	1e-98
Q43157	285	Ribulose-phosphate 3-epim	N/A	no	1.0	0.666	0.921	8e-98
Q9ZTP5	274	Ribulose-phosphate 3-epim	yes	no	0.989	0.686	0.920	2e-97
P74061	230	Ribulose-phosphate 3-epim	N/A	no	0.978	0.808	0.682	4e-71
O34557	217	Ribulose-phosphate 3-epim	yes	no	0.952	0.834	0.630	2e-56
O67098	222	Ribulose-phosphate 3-epim	yes	no	0.931	0.797	0.497	1e-44
P44756	224	Ribulose-phosphate 3-epim	yes	no	0.942	0.799	0.489	9e-43
Q04539	241	Ribulose-phosphate 3-epim	yes	no	0.978	0.771	0.479	2e-42
P40117	241	Ribulose-phosphate 3-epim	no	no	0.889	0.701	0.508	1e-41
P0AG10	225	Ribulose-phosphate 3-epim	yes	no	0.947	0.8	0.475	2e-41

>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1

 Score =  358 bits (919), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 173/190 (91%), Positives = 183/190 (96%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSST
Sbjct: 91  MDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST 150

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 151 IHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVK 210

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLR++C E+G+NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIK
Sbjct: 211 KISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIK 270

Query: 181 TSKRPQAVAV 190
           TSKRP+AVAV
Sbjct: 271 TSKRPEAVAV 280

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
Solanum tuberosum (taxid: 4113)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1

>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1

 Score =  355 bits (912), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 175/190 (92%), Positives = 180/190 (94%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +ST
Sbjct: 96  MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELAST 155

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQIK LGAKAGVVLNP T LS IE VLDVVDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 156 IHLHRTVNQIKSLGAKAGVVLNPGTPLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVK 215

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLR+MC+EKGVNPWIEVDGGV P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK
Sbjct: 216 KISDLRKMCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 275

Query: 181 TSKRPQAVAV 190
            SKRP+ VAV
Sbjct: 276 ASKRPEPVAV 285

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Spinacia oleracea (taxid: 3562)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2

 Score =  354 bits (909), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 173/188 (92%), Positives = 182/188 (96%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST
Sbjct: 85  MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 144

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQIK LGAKAGVVLNPAT L+AI+ VLDVVDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 145 IHLHRTVNQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVK 204

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KI++LRR+C EKGVNPWIEVDGGVGPKNAYKVIEAGANA+VAGSAVFGA DYAEAIKGIK
Sbjct: 205 KIAELRRLCAEKGVNPWIEVDGGVGPKNAYKVIEAGANAIVAGSAVFGAPDYAEAIKGIK 264

Query: 181 TSKRPQAV 188
           TS++P AV
Sbjct: 265 TSQKPVAV 272

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpe PE=1 SV=3

 Score =  267 bits (682), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 154/186 (82%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPL+VDA+RP+T   LDVHLMIVEPE+ V DF KAGADI+SVH E +++
Sbjct: 39  MDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNAS 98

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            HLHRTL QI++LG KAG VLNP+T L  +E VL V DL+LIMSVNPGFGGQSFI   + 
Sbjct: 99  PHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLP 158

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KI  LR+MC E+G++PWIEVDGG+ P N ++V+EAGANA+VAGSAVF A +YAEAI G++
Sbjct: 159 KIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVR 218

Query: 181 TSKRPQ 186
            SKRP+
Sbjct: 219 NSKRPE 224

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus subtilis (strain 168) GN=rpe PE=3 SV=1

 Score =  218 bits (554), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/184 (63%), Positives = 138/184 (75%), Gaps = 3/184 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPNITIGPL+V+A+RPVTDLPLDVHLMI EP++ +P F KAGADI+SVH E    
Sbjct: 36  MDGHFVPNITIGPLIVEAVRPVTDLPLDVHLMIEEPDRYIPAFAKAGADILSVHAEACP- 94

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            HLHRT+  IK+ G KAGVVLNP T +  IE V D +DLVL+M+VNPGFGGQ FI S + 
Sbjct: 95  -HLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHVFDDLDLVLLMTVNPGFGGQKFIHSVLP 153

Query: 121 KISDLRRMCLEKG-VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
           KI +++RM  EKG  +  IEVDGGV  + A  VIEAGAN LVAGSAV+G  D  +AI  I
Sbjct: 154 KIKEVKRMADEKGKKDLLIEVDGGVNKETAPLVIEAGANLLVAGSAVYGQSDRKKAISEI 213

Query: 180 KTSK 183
           + SK
Sbjct: 214 RGSK 217

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus (strain VF5) GN=rpe PE=3 SV=1

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 123/183 (67%), Gaps = 6/183 (3%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPNIT G  ++  +R    LP+D HLMI  P++ +P F++AGA+ +SVH E  + 
Sbjct: 36  MDGHFVPNITAGYEILSHIRKRASLPIDAHLMIENPDKYIPKFVEAGANWISVHIE--NN 93

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            H+HRTL  IK+LGAKAGVV+NP TSLSAIE  L   D VL+MSVNPGF GQ FIE  ++
Sbjct: 94  YHIHRTLQLIKELGAKAGVVVNPGTSLSAIEEALYYADYVLLMSVNPGFSGQKFIERSIE 153

Query: 121 KISDLRRMCLEKGVNP--WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 178
           ++  L+ M     +NP   IE+DGG+   N  +V+ AGA+ +V GS +FGAKD     + 
Sbjct: 154 RLRILKEM--RDRINPSCLIEIDGGIKENNIAEVVRAGADVVVVGSGIFGAKDIEAQTRK 211

Query: 179 IKT 181
           +K+
Sbjct: 212 LKS 214

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rpe PE=3 SV=1

 Score =  172 bits (437), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 121/182 (66%), Gaps = 3/182 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
           MD  +VPN+T GP V  ALR      P+DVHLM+   ++ +PDF KAGA+ ++ H E S 
Sbjct: 38  MDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPDFAKAGANYITFHPESSE 97

Query: 60  TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
             H+ R+L  I+D G K+G+V NPA  LS ++ VLD VD+VL+MSVNPGFGGQSFI + +
Sbjct: 98  --HIDRSLQLIRDCGCKSGLVFNPAMPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATL 155

Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
           KK+   R++  E G +  +EVDGGV   N  ++  AGA+  VAGSA+FG  DY + I  I
Sbjct: 156 KKLQQARKIIDESGYDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQI 215

Query: 180 KT 181
           +T
Sbjct: 216 RT 217

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q04539|RPEP_CUPNH Ribulose-phosphate 3-epimerase, plasmid OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1

 Score =  171 bits (434), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 122/192 (63%), Gaps = 6/192 (3%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MD  +V N+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+++S H E S  
Sbjct: 50  MDNHYVSNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR- 108

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            H+ RT+  I+D G KAG+VLNPAT LS ++  LD +DLVL+MSVNPGFGGQ+FI   + 
Sbjct: 109 -HVDRTIGLIRDHGCKAGLVLNPATPLSWLDHTLDKLDLVLLMSVNPGFGGQAFIPGVLD 167

Query: 121 KISDLR----RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 176
           K+   R    R     G   W+E+DGGV   N  ++  AGA+  VAGSAVFGA D     
Sbjct: 168 KVRQARARIDRQVAAGGRPVWLEIDGGVKADNITEIARAGADTFVAGSAVFGAPDADGGY 227

Query: 177 KGIKTSKRPQAV 188
           +GI    R  A 
Sbjct: 228 RGILHRLREAAT 239

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P40117|RPEC_CUPNH Ribulose-phosphate 3-epimerase, chromosomal OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/175 (50%), Positives = 116/175 (66%), Gaps = 6/175 (3%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MD  +VPN+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+I+S H E S  
Sbjct: 50  MDNHYVPNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR- 108

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            H+ RT+  I+D G KAG+VLNPAT L  ++  LD +DLVL+MSVNPGFGGQ+FI   + 
Sbjct: 109 -HVDRTIGLIRDHGCKAGLVLNPATPLGWLDHTLDQLDLVLLMSVNPGFGGQAFIPGVLD 167

Query: 121 KISDLR----RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 171
           K+   R    R     G   W+E+DGGV   N   +  AGA+  VAGSAVFGA D
Sbjct: 168 KVRQARARIDRQVDAGGRPVWLEIDGGVKADNIAAIARAGADTFVAGSAVFGAPD 222

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P0AG10|RPE_SHIFL Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3 SV=1

 Score =  168 bits (425), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 122/183 (66%), Gaps = 3/183 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
           MD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S 
Sbjct: 38  MDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE 97

Query: 60  TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
             H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGGQSFI   +
Sbjct: 98  --HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTL 155

Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
            K+ ++RR   E G +  +EVDGGV   N  ++  AGA+  VAGSA+F   DY + I  +
Sbjct: 156 DKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEM 215

Query: 180 KTS 182
           ++ 
Sbjct: 216 RSE 218

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Shigella flexneri (taxid: 623)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
356511994	280	PREDICTED: ribulose-phosphate 3-epimeras	1.0	0.678	0.947	1e-100
449439289	283	PREDICTED: ribulose-phosphate 3-epimeras	1.0	0.671	0.952	1e-100
225457361	282	PREDICTED: ribulose-phosphate 3-epimeras	1.0	0.673	0.942	1e-98
224124194	286	predicted protein [Populus trichocarpa]	1.0	0.664	0.931	2e-98
297797095	281	hypothetical protein ARALYDRAFT_919384 [	1.0	0.676	0.936	1e-97
15240250	281	D-ribulose-5-phosphate-3-epimerase [Arab	1.0	0.676	0.931	5e-97
2499728	280	RecName: Full=Ribulose-phosphate 3-epime	1.0	0.678	0.910	6e-97
363807408	280	uncharacterized protein LOC100817791 [Gl	1.0	0.678	0.915	9e-97
388495770	283	unknown [Lotus japonicus]	1.0	0.671	0.921	9e-97
227206446	190	AT5G61410 [Arabidopsis thaliana]	1.0	1.0	0.931	1e-96

>gi|356511994|ref|XP_003524706.1| PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic-like [Glycine max]

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/190 (94%), Positives = 185/190 (97%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST
Sbjct: 91  MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 150

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQ+K LGAKAGVVLNPAT LSAIE VLDVVDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 151 IHLHRTVNQVKSLGAKAGVVLNPATPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQVK 210

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLRR+C EKGVNPWIEVDGGVGP NAYKVIEAGANALVAGSAVFGAKDYAEAI+GIK
Sbjct: 211 KISDLRRVCAEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIRGIK 270

Query: 181 TSKRPQAVAV 190
           TSKRP+AVAV
Sbjct: 271 TSKRPEAVAV 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439289|ref|XP_004137418.1| PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic-like [Cucumis sativus] gi|449486996|ref|XP_004157465.1| PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic-like [Cucumis sativus]

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/190 (95%), Positives = 184/190 (96%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST
Sbjct: 94  MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 153

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQIK LGAKAGVVLNPATSLS IE VLDVVDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 154 IHLHRTVNQIKSLGAKAGVVLNPATSLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVK 213

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLRR+C EKGVNPWIEVDGGVGP NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK
Sbjct: 214 KISDLRRLCAEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 273

Query: 181 TSKRPQAVAV 190
           TSKRP+AV V
Sbjct: 274 TSKRPEAVPV 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457361|ref|XP_002284772.1| PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic-like [Vitis vinifera]

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/190 (94%), Positives = 182/190 (95%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPL+V ALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST
Sbjct: 93  MDGRFVPNITIGPLIVGALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 152

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQIK LGAKAGVVLNPAT LS IE VLDVVDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 153 IHLHRTINQIKSLGAKAGVVLNPATPLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVK 212

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLRR+C EKGVNPWIEVDGGVGP NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK
Sbjct: 213 KISDLRRICAEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 272

Query: 181 TSKRPQAVAV 190
           TSKRP AVAV
Sbjct: 273 TSKRPVAVAV 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124194|ref|XP_002330128.1| predicted protein [Populus trichocarpa] gi|222871262|gb|EEF08393.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 177/190 (93%), Positives = 184/190 (96%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ++T
Sbjct: 97  MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQTAT 156

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRTLN IK LGAKAGVVLNPAT LS IE VLDVVDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 157 IHLHRTLNMIKSLGAKAGVVLNPATPLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVK 216

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KIS+LRRMC+EKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAI+GIK
Sbjct: 217 KISELRRMCVEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIRGIK 276

Query: 181 TSKRPQAVAV 190
           +SKRP+AVAV
Sbjct: 277 SSKRPEAVAV 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797095|ref|XP_002866432.1| hypothetical protein ARALYDRAFT_919384 [Arabidopsis lyrata subsp. lyrata] gi|297312267|gb|EFH42691.1| hypothetical protein ARALYDRAFT_919384 [Arabidopsis lyrata subsp. lyrata]

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 178/190 (93%), Positives = 181/190 (95%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ ST
Sbjct: 92  MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQQST 151

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQIK LGAKAGVVLNP T LSAIE VLDVVDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 152 IHLHRTVNQIKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQVK 211

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLR+MC EKGVNPWIEVDGGV P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK
Sbjct: 212 KISDLRKMCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271

Query: 181 TSKRPQAVAV 190
            SKRP+AVAV
Sbjct: 272 ASKRPEAVAV 281

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240250|ref|NP_200949.1| D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|30697525|ref|NP_851240.1| D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|4102703|gb|AAD09954.1| ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|9757862|dbj|BAB08496.1| ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|15027997|gb|AAK76529.1| putative ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|20259209|gb|AAM14320.1| putative ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|332010080|gb|AED97463.1| D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|332010081|gb|AED97464.1| D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 177/190 (93%), Positives = 180/190 (94%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ ST
Sbjct: 92  MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQQST 151

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQIK LGAKAGVVLNP T LSAIE VLD+VDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 152 IHLHRTVNQIKSLGAKAGVVLNPGTPLSAIEYVLDMVDLVLIMSVNPGFGGQSFIESQVK 211

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLR+MC EKGVNPWIEVDGGV P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK
Sbjct: 212 KISDLRKMCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271

Query: 181 TSKRPQAVAV 190
            SKRP AVAV
Sbjct: 272 ASKRPAAVAV 281

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2499728|sp|Q43843.1|RPE_SOLTU RecName: Full=Ribulose-phosphate 3-epimerase, chloroplastic; AltName: Full=Pentose-5-phosphate 3-epimerase; Short=PPE; AltName: Full=R5P3E; Short=RPE; Flags: Precursor gi|902739|emb|CAA90426.1| pentose-5-phosphate-3-epimerase [Solanum tuberosum]

 Score =  358 bits (919), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 173/190 (91%), Positives = 183/190 (96%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSST
Sbjct: 91  MDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST 150

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 151 IHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVK 210

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLR++C E+G+NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIK
Sbjct: 211 KISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIK 270

Query: 181 TSKRPQAVAV 190
           TSKRP+AVAV
Sbjct: 271 TSKRPEAVAV 280

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807408|ref|NP_001242382.1| uncharacterized protein LOC100817791 [Glycine max] gi|255647180|gb|ACU24058.1| unknown [Glycine max]

 Score =  357 bits (917), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 174/190 (91%), Positives = 180/190 (94%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVDALRPVTDLPL VHLMIVEPEQRVPDFIKAGADIVSVHCEQSST
Sbjct: 91  MDGRFVPNITIGPLVVDALRPVTDLPLGVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 150

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQ+K LGAKAGVVLNP T LSAIE +LDVVDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 151 IHLHRTVNQVKSLGAKAGVVLNPGTPLSAIEYILDVVDLVLIMSVNPGFGGQSFIESQVK 210

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLRR+C EKGVNPWIEVDGGVGP NAYKVIEAGANALVAG AVFGAKDYAE I+GIK
Sbjct: 211 KISDLRRLCAEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGFAVFGAKDYAETIRGIK 270

Query: 181 TSKRPQAVAV 190
           TSKRP+ VAV
Sbjct: 271 TSKRPEVVAV 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495770|gb|AFK35951.1| unknown [Lotus japonicus]

 Score =  357 bits (917), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 175/190 (92%), Positives = 181/190 (95%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPL+VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVS+HCEQSST
Sbjct: 94  MDGRFVPNITIGPLIVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSIHCEQSST 153

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLH T+NQ+K LGAKAGVVLNP T LSAIE VLDVVDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 154 IHLHCTVNQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQVK 213

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLRR+C EKGVNPWIEVDGGV P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK
Sbjct: 214 KISDLRRLCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 273

Query: 181 TSKRPQAVAV 190
           TSKRP+ VAV
Sbjct: 274 TSKRPEPVAV 283

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227206446|dbj|BAH57278.1| AT5G61410 [Arabidopsis thaliana]

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 177/190 (93%), Positives = 180/190 (94%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ ST
Sbjct: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQQST 60

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQIK LGAKAGVVLNP T LSAIE VLD+VDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 61  IHLHRTVNQIKSLGAKAGVVLNPGTPLSAIEYVLDMVDLVLIMSVNPGFGGQSFIESQVK 120

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLR+MC EKGVNPWIEVDGGV P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK
Sbjct: 121 KISDLRKMCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180

Query: 181 TSKRPQAVAV 190
            SKRP AVAV
Sbjct: 181 ASKRPAAVAV 190

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
UNIPROTKB|Q43843	280	Q43843 "Ribulose-phosphate 3-e	1.0	0.678	0.910	2.2e-89
TAIR|locus:2163228	281	RPE "D-ribulose-5-phosphate-3-	1.0	0.676	0.931	2.2e-89
UNIPROTKB|Q43157	285	RPE "Ribulose-phosphate 3-epim	1.0	0.666	0.921	1.2e-88
TIGR_CMR|GSU_3374	221	GSU_3374 "ribulose-phosphate 3	0.963	0.828	0.580	2.4e-51
TIGR_CMR|BA_3998	214	BA_3998 "ribulose-phosphate 3-	0.936	0.831	0.588	1.3e-50
TIGR_CMR|CHY_1476	219	CHY_1476 "ribulose-phosphate 3	0.915	0.794	0.516	4.6e-41
TIGR_CMR|ECH_0082	228	ECH_0082 "ribulose-phosphate 3	0.947	0.789	0.489	1.6e-40
TIGR_CMR|APH_0002	236	APH_0002 "ribulose-phosphate 3	0.942	0.758	0.475	5.3e-40
UNIPROTKB|P0AG07	225	rpe [Escherichia coli K-12 (ta	0.942	0.795	0.478	1.4e-39
UNIPROTKB|Q9KNV5	236	VC_2625 "Ribulose-phosphate 3-	0.936	0.754	0.464	1.6e-38

UNIPROTKB|Q43843 Q43843 "Ribulose-phosphate 3-epimerase, chloroplastic" [Solanum tuberosum (taxid:4113)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 173/190 (91%), Positives = 183/190 (96%)

Query:     1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
             MDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSST
Sbjct:    91 MDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST 150

Query:    61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
             IHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVK
Sbjct:   151 IHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVK 210

Query:   121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
             KISDLR++C E+G+NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIK
Sbjct:   211 KISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIK 270

Query:   181 TSKRPQAVAV 190
             TSKRP+AVAV
Sbjct:   271 TSKRPEAVAV 280

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS

TAIR|locus:2163228 RPE "D-ribulose-5-phosphate-3-epimerase" [Arabidopsis thaliana (taxid:3702)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 177/190 (93%), Positives = 180/190 (94%)

Query:     1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
             MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ ST
Sbjct:    92 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQQST 151

Query:    61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
             IHLHRT+NQIK LGAKAGVVLNP T LSAIE VLD+VDLVLIMSVNPGFGGQSFIESQVK
Sbjct:   152 IHLHRTVNQIKSLGAKAGVVLNPGTPLSAIEYVLDMVDLVLIMSVNPGFGGQSFIESQVK 211

Query:   121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
             KISDLR+MC EKGVNPWIEVDGGV P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK
Sbjct:   212 KISDLRKMCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271

Query:   181 TSKRPQAVAV 190
              SKRP AVAV
Sbjct:   272 ASKRPAAVAV 281

GO:0003824 "catalytic activity" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA;ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0009624 "response to nematode" evidence=IMP

UNIPROTKB|Q43157 RPE "Ribulose-phosphate 3-epimerase, chloroplastic" [Spinacia oleracea (taxid:3562)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 175/190 (92%), Positives = 180/190 (94%)

Query:     1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
             MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +ST
Sbjct:    96 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELAST 155

Query:    61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
             IHLHRT+NQIK LGAKAGVVLNP T LS IE VLDVVDLVLIMSVNPGFGGQSFIESQVK
Sbjct:   156 IHLHRTVNQIKSLGAKAGVVLNPGTPLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVK 215

Query:   121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
             KISDLR+MC+EKGVNPWIEVDGGV P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK
Sbjct:   216 KISDLRKMCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 275

Query:   181 TSKRPQAVAV 190
              SKRP+ VAV
Sbjct:   276 ASKRPEPVAV 285

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=NAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0019253 "reductive pentose-phosphate cycle" evidence=NAS

TIGR_CMR|GSU_3374 GSU_3374 "ribulose-phosphate 3-epimerase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 108/186 (58%), Positives = 136/186 (73%)

Query:     1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
             MDG FVPNITIGPLVV+A+R VT+LPLDVHLMI  P++ +PDF  AG+DI+ VH E S+ 
Sbjct:    36 MDGHFVPNITIGPLVVEAVRRVTELPLDVHLMIEHPDRYIPDFAAAGSDIIVVHAEAST- 94

Query:    61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
              HLHRT+  IK LG KAGV LNPAT L+ ++ VL+ +DLVL+M+VNPGFGGQSFIE+ + 
Sbjct:    95 -HLHRTIQLIKSLGKKAGVSLNPATPLNCLDYVLEDLDLVLLMTVNPGFGGQSFIEACIP 153

Query:   121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
             KI  LR M   +G    +EVDGGV   N  ++  AGA+  VAGSA+FG+ DY   IK +K
Sbjct:   154 KIQSLRAMLDRRGCEAELEVDGGVKIDNIARIAHAGADVFVAGSAIFGSPDYEATIKELK 213

Query:   181 T-SKRP 185
               +K P
Sbjct:   214 RRAKEP 219

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=ISS

GO:0006098 "pentose-phosphate shunt" evidence=ISS

TIGR_CMR|BA_3998 BA_3998 "ribulose-phosphate 3-epimerase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 106/180 (58%), Positives = 130/180 (72%)

Query:     1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
             MDG FVPNITIGPL+V+A+RP+T LPLDVHLMI  P+  +P F KAGADI++VH E    
Sbjct:    36 MDGHFVPNITIGPLIVEAIRPITSLPLDVHLMIENPDNYIPTFAKAGADIITVHVEACP- 94

Query:    61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
              HLHRT+  IK  G KAGVVLNP T +S IE VL+ +D+VL+M+VNPGFGGQ FI S + 
Sbjct:    95 -HLHRTIQLIKSHGIKAGVVLNPHTPVSVIEHVLEDIDMVLLMTVNPGFGGQKFIHSVLP 153

Query:   121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
             KI  +  M  E+ +   IEVDGGV  + A   +EAGAN LVAGSAV+  KD  EAI+ I+
Sbjct:   154 KIKQVAEMVKERNLEVEIEVDGGVNAETARLCVEAGANVLVAGSAVYNQKDRGEAIRVIR 213

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=ISS

GO:0006098 "pentose-phosphate shunt" evidence=ISS

TIGR_CMR|CHY_1476 CHY_1476 "ribulose-phosphate 3-epimerase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 93/180 (51%), Positives = 122/180 (67%)

Query:     1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
             MDG FVPN+T GP VV +LR  T+L  DVHLM+ +PE  +  FI+AGAD++++H E  ST
Sbjct:    37 MDGHFVPNLTFGPPVVKSLRAKTNLIFDVHLMVEKPESLIEPFIEAGADMITIHWE--ST 94

Query:    61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
              H HR L +IKD G KAG+ LNPAT    +E +LD++DL+LIMSVNPGFGGQSFI +Q+ 
Sbjct:    95 RHPHRLLQKIKDSGKKAGIALNPATLPENLEYLLDLIDLILIMSVNPGFGGQSFINNQLT 154

Query:   121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
             KI  ++ M  +      + VDGG+  + A  VIEAGAN LV GS +F      + IK +K
Sbjct:   155 KIRKVKSMVCKAPQEILLGVDGGINLQTAPLVIEAGANFLVTGSFLFKG----DVIKNLK 210

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=ISS

GO:0006098 "pentose-phosphate shunt" evidence=ISS

TIGR_CMR|ECH_0082 ECH_0082 "ribulose-phosphate 3-epimerase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 89/182 (48%), Positives = 122/182 (67%)

Query:     1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
             MDG FVPNITIGP+VV A++  T +P DVHLMI  P   +  F+ AGAD++++H E  S 
Sbjct:    48 MDGNFVPNITIGPVVVSAIKKYTTIPFDVHLMINSPGNYIEAFVDAGADMITIHAE--SD 105

Query:    61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
             IHL R + +IK     AG+ L P +  + +E ++  +DLVLIM+VNPGFGGQ FI SQ+ 
Sbjct:   106 IHLDRIIQKIKSYKKSAGLSLVPTSHYNILEYIIFELDLVLIMTVNPGFGGQQFITSQLD 165

Query:   121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
             KIS +R +  +  +   I VDGGV  KNA  VIEAGA+ LV GSA+F A +  + ++ +K
Sbjct:   166 KISCVRNLIEKYSLKTKIAVDGGVNIKNAKSVIEAGADILVVGSAIFNANNMLDYVQQLK 225

Query:   181 TS 182
             +S
Sbjct:   226 SS 227

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=ISS

GO:0006098 "pentose-phosphate shunt" evidence=ISS

TIGR_CMR|APH_0002 APH_0002 "ribulose-phosphate 3-epimerase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 86/181 (47%), Positives = 122/181 (67%)

Query:     1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
             MDG FVP++T+GP+V+  +R  T++ LDVHLMI  P   +   + AGAD+++VH E  S 
Sbjct:    57 MDGCFVPSLTMGPVVISGIRKCTNMFLDVHLMINRPGDHLKSVVDAGADMITVHAE--SE 114

Query:    61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
             +HL R + QIK  G K GV + P T  S +E ++  +D+VL+MSV+PGFGGQ+F+E Q+K
Sbjct:   115 VHLCRLIKQIKLYGKKVGVSIVPKTHHSVLEYIIHDLDVVLVMSVDPGFGGQAFLEPQLK 174

Query:   121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
             KI  +R+M  E      I VDGGV   NA  VIEAGAN LV G+A+F A D ++ ++ +K
Sbjct:   175 KIEHIRKMIEESSSTAKIAVDGGVSTDNARAVIEAGANILVVGTALFAADDMSKVVRTLK 234

Query:   181 T 181
             +
Sbjct:   235 S 235

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=ISS

GO:0006098 "pentose-phosphate shunt" evidence=ISS

UNIPROTKB|P0AG07 rpe [Escherichia coli K-12 (taxid:83333)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 87/182 (47%), Positives = 122/182 (67%)

Query:     1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
             MD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S 
Sbjct:    38 MDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE 97

Query:    60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
               H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGGQSFI   +
Sbjct:    98 --HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTL 155

Query:   120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
              K+ ++RR   E G +  +EVDGGV   N  ++  AGA+  VAGSA+F   DY + I  +
Sbjct:   156 DKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEM 215

Query:   180 KT 181
             ++
Sbjct:   216 RS 217

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA;IDA;IMP

GO:0008198 "ferrous iron binding" evidence=IDA

GO:0019323 "pentose catabolic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IGI

UNIPROTKB|Q9KNV5 VC_2625 "Ribulose-phosphate 3-epimerase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 84/181 (46%), Positives = 118/181 (65%)

Query:     1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
             MD  +VPN+T G  +  ALR      P+DVHLM+   ++ +PDF KAGA +++ H E S 
Sbjct:    50 MDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASE 109

Query:    60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
               H+ RTL  IK+ G +AGVVLNPAT L  ++ ++D VDL+L+MSVNPGFGGQSFI   +
Sbjct:   110 --HVDRTLQLIKECGCQAGVVLNPATPLHHLDYIMDKVDLILLMSVNPGFGGQSFIPHTL 167

Query:   120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
              K+  +R    + G    +E+DGGV  +N  ++ EAGA+  VAGSA+FG  DY   I+ +
Sbjct:   168 DKLRAVRERIKQSGRPIRLEIDGGVKVENIREIAEAGADMFVAGSAIFGQPDYQAVIEQM 227

Query:   180 K 180
             +
Sbjct:   228 R 228

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=ISS

GO:0006098 "pentose-phosphate shunt" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P74061	RPE_SYNY3	5, ., 1, ., 3, ., 1	0.6827	0.9789	0.8086	N/A	no
P56188	RPE_HELPY	5, ., 1, ., 3, ., 1	0.4074	0.9631	0.8433	yes	no
O34557	RPE_BACSU	5, ., 1, ., 3, ., 1	0.6304	0.9526	0.8341	yes	no
Q9ZJ75	RPE_HELPJ	5, ., 1, ., 3, ., 1	0.4074	0.9631	0.8433	yes	no
Q43843	RPE_SOLTU	5, ., 1, ., 3, ., 1	0.9105	1.0	0.6785	N/A	no
Q43157	RPE_SPIOL	5, ., 1, ., 3, ., 1	0.9210	1.0	0.6666	N/A	no
Q9ZTP5	RPE_ORYSJ	5, ., 1, ., 3, ., 1	0.9202	0.9894	0.6861	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.1.3.1	0.991
3rd Layer	5.1.3	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
PLN02334	229	PLN02334, PLN02334, ribulose-phosphate 3-epimerase	1e-113
PRK05581	220	PRK05581, PRK05581, ribulose-phosphate 3-epimerase	1e-103
cd00429	211	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RP	1e-101
COG0036	220	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Car	5e-92
pfam00834	201	pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 ep	4e-91
TIGR01163	210	TIGR01163, rpe, ribulose-phosphate 3-epimerase	8e-91
PRK09722	229	PRK09722, PRK09722, allulose-6-phosphate 3-epimera	1e-55
PTZ00170	228	PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epime	2e-53
PRK08883	220	PRK08883, PRK08883, ribulose-phosphate 3-epimerase	2e-53
PRK08745	223	PRK08745, PRK08745, ribulose-phosphate 3-epimerase	3e-52
PRK08005	210	PRK08005, PRK08005, epimerase; Validated	2e-22
PRK14057	254	PRK14057, PRK14057, epimerase; Provisional	1e-17
PRK08091	228	PRK08091, PRK08091, ribulose-phosphate 3-epimerase	3e-16
cd04722	200	cd04722, TIM_phosphate_binding, TIM barrel protein	4e-11
TIGR03128	206	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synth	1e-04
COG0269	217	COG0269, SgbH, 3-hexulose-6-phosphate synthase and	2e-04
PRK00043	212	PRK00043, thiE, thiamine-phosphate pyrophosphoryla	6e-04
TIGR01740	214	TIGR01740, pyrF, orotidine 5'-phosphate decarboxyl	6e-04
cd00564	196	cd00564, TMP_TenI, Thiamine monophosphate synthase	0.001
cd04726	202	cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate	0.002
COG0352	211	COG0352, ThiE, Thiamine monophosphate synthase [Co	0.004

>gnl|CDD|215192 PLN02334, PLN02334, ribulose-phosphate 3-epimerase

 Score =  320 bits (823), Expect = e-113
 Identities = 117/192 (60%), Positives = 134/192 (69%), Gaps = 6/192 (3%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPN+TIGP VV ALR  TD PLD HLM+  PE  VPDF KAGA I + H EQ+ST
Sbjct: 42  MDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQAST 101

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV--VDLVLIMSVNPGFGGQSFIESQ 118
           IHLHR + QIK  G KAGVVLNP T + A+E V++   VD+VL+MSV PGFGGQSFI S 
Sbjct: 102 IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSM 161

Query: 119 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 178
           + K+  LR+   E      IEVDGGVGP    K  EAGAN +VAGSAVFGA DYAE I G
Sbjct: 162 MDKVRALRKKYPEL----DIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISG 217

Query: 179 IKTSKRPQAVAV 190
           ++ S    AVAV
Sbjct: 218 LRASVEKAAVAV 229

Length = 229

>gnl|CDD|235515 PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated

 Score =  295 bits (759), Expect = e-103
 Identities = 106/185 (57%), Positives = 135/185 (72%), Gaps = 2/185 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPN+TIGP VV+A+R VT LPLDVHLM+  P++ VPDF KAGADI++ H E  ++
Sbjct: 38  MDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFHVE--AS 95

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            H+HR L  IK  G KAG+VLNPAT L  +E VLD++DLVL+MSVNPGFGGQ FI   ++
Sbjct: 96  EHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLE 155

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KI +LR++  E+G++  IEVDGG+   N  +  EAGA+  VAGSAVFGA DY EAI  ++
Sbjct: 156 KIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLR 215

Query: 181 TSKRP 185
                
Sbjct: 216 AELAA 220

Length = 220

>gnl|CDD|238244 cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)

 Score =  290 bits (746), Expect = e-101
 Identities = 105/180 (58%), Positives = 129/180 (71%), Gaps = 2/180 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPN+T GP VV ALR  TDLPLDVHLM+  PE+ +  F KAGADI++ H E  +T
Sbjct: 34  MDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHAE--AT 91

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            HLHRT+  IK+LG KAGV LNP T +  +E  LD VDLVL+MSVNPGFGGQ FI   ++
Sbjct: 92  DHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLE 151

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KI  LR +  E  +N  IEVDGG+  +    + EAGA+ LVAGSA+FG+ DYAEAIK ++
Sbjct: 152 KIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYAEAIKELR 211

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. Length = 211

>gnl|CDD|223114 COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

 Score =  267 bits (685), Expect = 5e-92
 Identities = 103/183 (56%), Positives = 131/183 (71%), Gaps = 3/183 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPNIT GP VV ALR +TDLPLDVHLM+  P++ +  F KAGADI++ H E  +T
Sbjct: 38  MDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAE--AT 95

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            H+HRT+  IK+LG KAG+VLNPAT L A+E VLD VDLVL+MSVNPGFGGQ FI   ++
Sbjct: 96  EHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLE 155

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KI +LR M  E+  +  IEVDGG+  +   ++  AGA+  VAGSA+FGA DY   I+ ++
Sbjct: 156 KIRELRAMIDERL-DILIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYKATIRELR 214

Query: 181 TSK 183
              
Sbjct: 215 GEL 217

Length = 220

>gnl|CDD|216142 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family

 Score =  264 bits (677), Expect = 4e-91
 Identities = 109/170 (64%), Positives = 135/170 (79%), Gaps = 2/170 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPN+TIGPLVV+ALRP+T+LPLDVHLM+ EP++ +PDF +AGADI+S H E  ++
Sbjct: 34  MDGHFVPNLTIGPLVVEALRPLTELPLDVHLMVEEPDRIIPDFAEAGADIISFHAE--AS 91

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            H HRT+  IK+ GAKAG+VLNPAT L AIE +LD +DLVL+MSVNPGFGGQSFI S + 
Sbjct: 92  DHPHRTIQLIKEAGAKAGLVLNPATPLDAIEYLLDDLDLVLLMSVNPGFGGQSFIPSVLP 151

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170
           KI  +R+M  E G++  IEVDGGV   N  ++ EAGA+ LVAGSAVFGA 
Sbjct: 152 KIRKVRKMIDEGGLDTLIEVDGGVNLDNIPQIAEAGADVLVAGSAVFGAP 201

This enzyme catalyzes the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate. Length = 201

>gnl|CDD|130231 TIGR01163, rpe, ribulose-phosphate 3-epimerase

 Score =  263 bits (675), Expect = 8e-91
 Identities = 106/180 (58%), Positives = 137/180 (76%), Gaps = 2/180 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPN+T GP V++ALR  TDLP+DVHLM+  P++ + DF +AGADI++VH E  ++
Sbjct: 33  MDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPE--AS 90

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            H+HR L  IKDLGAKAG+VLNPAT L  +E VL  VDLVL+MSVNPGFGGQ FI   ++
Sbjct: 91  EHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLE 150

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KI ++R+M  E G++  IEVDGGV   NA ++ EAGA+ LVAGSA+FGA DY E I+ ++
Sbjct: 151 KIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIFGADDYKEVIRSLR 210

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants [Energy metabolism, Pentose phosphate pathway]. Length = 210

>gnl|CDD|236616 PRK09722, PRK09722, allulose-6-phosphate 3-epimerase; Provisional

 Score =  175 bits (445), Expect = 1e-55
 Identities = 63/172 (36%), Positives = 103/172 (59%), Gaps = 2/172 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPN+T+ P  V  ++ +   PLDVHLM+ +P+  +     AGAD +++H E  + 
Sbjct: 36  MDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETING 95

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
               R +++I+  G K G+VLNP T + +I+  + ++D + +M+V+PGF GQ FI   + 
Sbjct: 96  -QAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLD 154

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG-SAVFGAKD 171
           KI++L+ +    G+   IEVDG    K   K++EAGA+  + G S +F   +
Sbjct: 155 KIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNLDE 206

Length = 229

>gnl|CDD|240303 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase; Provisional

 Score =  169 bits (431), Expect = 2e-53
 Identities = 74/185 (40%), Positives = 111/185 (60%), Gaps = 8/185 (4%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLP-LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
           MDG FVPN++ GP VV +LR       LD HLM+  PE+ V DF KAGA   + H E + 
Sbjct: 41  MDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATE 100

Query: 60  TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIES 117
                    +I++ G K GV + P T +  +  ++D  +VD+VL+M+V PGFGGQSF+  
Sbjct: 101 DDPK-AVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHD 159

Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
            + K+ +LR+    +  +  I+VDGG+  +      +AGAN +VAGS++F AKD  +AI+
Sbjct: 160 MMPKVRELRK----RYPHLNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIE 215

Query: 178 GIKTS 182
            ++ S
Sbjct: 216 LLRES 220

Length = 228

>gnl|CDD|181575 PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional

 Score =  169 bits (429), Expect = 2e-53
 Identities = 87/182 (47%), Positives = 119/182 (65%), Gaps = 3/182 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
           MD  +VPN+T G  +  ALR      P+DVHLM+   ++ +PDF KAGA +++ H E S 
Sbjct: 34  MDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASE 93

Query: 60  TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
             H+ RTL  IK+ G +AGVVLNPAT L  +E ++D VDL+L+MSVNPGFGGQSFI   +
Sbjct: 94  --HVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTL 151

Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
            K+  +R+M  E G +  +E+DGGV   N  ++ EAGA+  VAGSA+FG  DY   I  +
Sbjct: 152 DKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEM 211

Query: 180 KT 181
           + 
Sbjct: 212 RA 213

Length = 220

>gnl|CDD|136958 PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional

 Score =  166 bits (422), Expect = 3e-52
 Identities = 91/184 (49%), Positives = 119/184 (64%), Gaps = 5/184 (2%)

Query: 1   MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQS 58
           MD  +VPN+TIGP+V  ALR      P+DVHLM VEP  R VPDF  AGA  +S H E S
Sbjct: 38  MDNHYVPNLTIGPMVCQALRKHGITAPIDVHLM-VEPVDRIVPDFADAGATTISFHPEAS 96

Query: 59  STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 118
              H+HRT+  IK  G +AG+VLNPAT +  ++ VL  +DLVL+MSVNPGFGGQ+FI S 
Sbjct: 97  R--HVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSA 154

Query: 119 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 178
           + K+  +R+     G    +E+DGGV   N   +  AGA+  VAGSA+F A DYA+ I  
Sbjct: 155 LDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQ 214

Query: 179 IKTS 182
           ++ +
Sbjct: 215 MRAA 218

Length = 223

>gnl|CDD|169179 PRK08005, PRK08005, epimerase; Validated

 Score = 89.3 bits (221), Expect = 2e-22
 Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 10/173 (5%)

Query: 2   DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 61
           D  F+ NIT G   + A+   T  PL  HLM+  P++ +P         + +H E  S  
Sbjct: 36  DTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAE--SVQ 93

Query: 62  HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 121
           +    L  I+ +GAKAG+ LNPAT L     +   +D ++IM+  P   GQ FI +  +K
Sbjct: 94  NPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEK 153

Query: 122 ISDLRRMCLEKGVNPWIE--VDGGVGPKNAYKVIEAGANALVAGSAVFGAKDY 172
           +S  R         P  E   DGG+  + A  +  AGA  LV G A+F   +Y
Sbjct: 154 VSQSREHF------PAAECWADGGITLRAARLLAAAGAQHLVIGRALFTTANY 200

Length = 210

>gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional

 Score = 77.8 bits (191), Expect = 1e-17
 Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 13/176 (7%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    
Sbjct: 54  MDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GD 109

Query: 61  IHLHRTLNQIK---------DLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG 111
           IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G 
Sbjct: 110 IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGS 169

Query: 112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167
           +       ++++ L  +  +K     I +DG +       +I  G + +V+GSA+F
Sbjct: 170 KMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225

Length = 254

>gnl|CDD|169215 PRK08091, PRK08091, ribulose-phosphate 3-epimerase; Validated

 Score = 73.4 bits (180), Expect = 3e-16
 Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 6/183 (3%)

Query: 2   DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 61
           DG+F P  T+G + +    P      DVHLM+ +  +     + AGADIV++  EQ  T 
Sbjct: 48  DGQFSPFFTVGAIAIKQF-PTHCFK-DVHLMVRDQFEVAKACVAAGADIVTLQVEQ--TH 103

Query: 62  HLHRTLNQIKDLGAKA--GVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
            L  T+  +         G+ L P T +S +E  LD +DL+ I++++P  G ++  +  +
Sbjct: 104 DLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLIL 163

Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
            ++  +      + V   I +DG +  + A  + +   + +V+GSA+F   +    +K  
Sbjct: 164 DRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALFSQGELKTTLKEW 223

Query: 180 KTS 182
           K+S
Sbjct: 224 KSS 226

Length = 228

>gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

 Score = 59.1 bits (143), Expect = 4e-11
 Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 13/172 (7%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPD----FIKAGADIVSVHCE 56
                    T    V+  +   TDLPL V L I +    V         AGAD V +H  
Sbjct: 34  RSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGA 93

Query: 57  QSSTI-HLHRTLNQIKD--LGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQS 113
                      + ++++     K  V L+P   L+A       VD V + +   G GG+ 
Sbjct: 94  VGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRD 153

Query: 114 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGS 164
            +      I+DL  +  ++G    +   GG+  P++A + +  GA+ ++ GS
Sbjct: 154 AVP-----IADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200

>gnl|CDD|132172 TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 122 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
             DL+ + L+      + V GG+       VI+ G + ++ G A+  A D AEA + I+
Sbjct: 146 FEDLQTI-LKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIR 203

Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. Length = 206

>gnl|CDD|223347 COG0269, SgbH, 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 111 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170
           G+S+ E  ++KI  L  +  +      + V GG+ P++       GA+ ++ G A+ GAK
Sbjct: 146 GKSWGEDDLEKIKKLSDLGAK------VAVAGGITPEDIPLFKGIGADIVIVGRAITGAK 199

Query: 171 DYAEAIKGIKTS 182
           D AEA +  K  
Sbjct: 200 DPAEAARKFKEE 211

Length = 217

>gnl|CDD|234590 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
           GG+ P+NA +V+EAGA+ +   SA+ GA+D   A +
Sbjct: 167 GGITPENAPEVLEAGADGVAVVSAITGAEDPEAAAR 202

Length = 212

>gnl|CDD|233555 TIGR01740, pyrF, orotidine 5'-phosphate decarboxylase, subfamily 1

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 15/147 (10%)

Query: 44  IKAGADIVSVH-CEQSSTIH-LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL 101
           IK GAD+V+VH      ++       ++    G  A   L   TS+ +     D ++ V+
Sbjct: 73  IKLGADMVNVHGVAGKESVEAAKEAASEFGRRGLLAVAEL---TSMGSEAYGEDTMEAVI 129

Query: 102 IMSVN------PGFGGQSFIESQVKKI-SDLRRMCLEKGVNPWIEV-DGGVGPKNAYKVI 153
             +         G    +    +++K   D   +    G+    +  D            
Sbjct: 130 EYAKEAKEFGLDGPVCSAEEAKEIRKATGDFLILT--PGIRLDSKDADDQQRVVTLEDAK 187

Query: 154 EAGANALVAGSAVFGAKDYAEAIKGIK 180
           EAGA+ ++ G  ++ A+D  EA K I+
Sbjct: 188 EAGADVIIVGRGIYAAEDPVEAAKRIR 214

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 214

>gnl|CDD|238317 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
           GG+ P+NA +V+ AGA+ +   SA+ GA D A A +
Sbjct: 157 GGITPENAAEVLAAGADGVAVISAITGADDPAAAAR 192

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. Length = 196

>gnl|CDD|240077 cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 124 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
           DL+++    GV   + V GG+ P    +  +AGA+ ++ G A+ GA D AEA +  
Sbjct: 149 DLKKVKKLLGVK--VAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAAREF 202

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. Length = 202

>gnl|CDD|223429 COG0352, ThiE, Thiamine monophosphate synthase [Coenzyme metabolism]

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 181
           GG+  +N  +V+EAGA+ +   SA+  A D A A K ++ 
Sbjct: 165 GGINLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRN 204

Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	100.0
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	100.0
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	100.0
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	100.0
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	100.0
PRK08005	210	epimerase; Validated	100.0
PRK14057	254	epimerase; Provisional	100.0
KOG3111	224	consensus D-ribulose-5-phosphate 3-epimerase [Carb	100.0
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	100.0
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	100.0
PLN02334	229	ribulose-phosphate 3-epimerase	100.0
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	100.0
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	100.0
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	100.0
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	100.0
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	100.0
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	99.98
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	99.97
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	99.97
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	99.97
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	99.96
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	99.95
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	99.94
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	99.92
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	99.88
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	99.87
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	99.84
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	99.81
PLN02591	250	tryptophan synthase	99.8
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	99.75
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	99.75
PRK13305	218	sgbH 3-keto-L-gulonate-6-phosphate decarboxylase;	99.72
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	99.71
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	99.66
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	99.61
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	99.59
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	99.57
COG0284	240	PyrF Orotidine-5'-phosphate decarboxylase [Nucleot	99.5
KOG4175	268	consensus Tryptophan synthase alpha chain [Amino a	99.49
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	99.49
cd04725	216	OMP_decarboxylase_like Orotidine 5'-phosphate deca	99.48
PRK07695	201	transcriptional regulator TenI; Provisional	99.46
PRK12290	437	thiE thiamine-phosphate pyrophosphorylase; Reviewe	99.44
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	99.42
PF00215	226	OMPdecase: Orotidine 5'-phosphate decarboxylase /	99.41
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	99.37
PRK04302	223	triosephosphate isomerase; Provisional	99.36
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	99.36
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	99.35
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	99.34
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	99.32
PRK03512	211	thiamine-phosphate pyrophosphorylase; Provisional	99.3
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	99.28
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	99.26
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	99.24
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	99.22
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	99.17
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	99.15
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	99.06
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	99.05
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	99.05
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	99.04
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	99.04
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	99.02
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	99.01
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	99.01
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	99.0
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	98.99
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	98.96
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	98.95
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	98.95
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.95
PRK00208	250	thiG thiazole synthase; Reviewed	98.94
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.9
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	98.88
TIGR02127	261	pyrF_sub2 orotidine 5'-phosphate decarboxylase, su	98.88
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	98.87
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	98.85
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	98.83
TIGR01334	277	modD putative molybdenum utilization protein ModD.	98.82
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	98.77
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.76
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	98.74
PRK08999	312	hypothetical protein; Provisional	98.72
PRK06806	281	fructose-bisphosphate aldolase; Provisional	98.72
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	98.72
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	98.72
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	98.71
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	98.7
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	98.66
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.65
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	98.65
PRK07226	267	fructose-bisphosphate aldolase; Provisional	98.64
PRK05500	477	bifunctional orotidine 5'-phosphate decarboxylase/	98.63
PLN02460	338	indole-3-glycerol-phosphate synthase	98.63
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	98.63
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	98.62
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	98.62
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	98.61
PRK14024	241	phosphoribosyl isomerase A; Provisional	98.6
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	98.55
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	98.54
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	98.52
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	98.52
PRK06096	284	molybdenum transport protein ModD; Provisional	98.52
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.51
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	98.51
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	98.51
PRK00125	278	pyrF orotidine 5'-phosphate decarboxylase; Reviewe	98.5
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	98.49
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	98.48
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	98.47
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	98.44
PRK07315	293	fructose-bisphosphate aldolase; Provisional	98.43
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	98.43
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	98.41
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	98.41
COG0149	251	TpiA Triosephosphate isomerase [Carbohydrate trans	98.39
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	98.38
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	98.38
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	98.38
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	98.38
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	98.37
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.37
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	98.35
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	98.35
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	98.34
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.34
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	98.33
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	98.32
cd00311	242	TIM Triosephosphate isomerase (TIM) is a glycolyti	98.32
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	98.32
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.32
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.32
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	98.31
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	98.27
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	98.25
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	98.25
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	98.24
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	98.23
COG0135	208	TrpF Phosphoribosylanthranilate isomerase [Amino a	98.22
PRK14567	253	triosephosphate isomerase; Provisional	98.22
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	98.2
PRK01222	210	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	98.2
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	98.19
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	98.18
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.17
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	98.17
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	98.15
PRK08227	264	autoinducer 2 aldolase; Validated	98.14
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.14
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	98.13
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	98.12
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	98.12
PRK14565	237	triosephosphate isomerase; Provisional	98.12
PRK00042	250	tpiA triosephosphate isomerase; Provisional	98.11
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.11
PRK06801	286	hypothetical protein; Provisional	98.11
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	98.11
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	98.1
PRK14905	355	triosephosphate isomerase/PTS system glucose/sucro	98.1
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	98.08
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	98.07
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	98.07
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	98.05
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	98.03
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	98.03
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	98.02
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	98.02
PF00697	197	PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome	97.99
KOG1606	296	consensus Stationary phase-induced protein, SOR/SN	97.99
PLN02716	308	nicotinate-nucleotide diphosphorylase (carboxylati	97.96
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	97.95
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	97.95
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.92
PLN02429	315	triosephosphate isomerase	97.91
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	97.89
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	97.87
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.87
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	97.87
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	97.86
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	97.86
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	97.85
TIGR00559	237	pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req	97.85
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	97.83
PRK11572	248	copper homeostasis protein CutC; Provisional	97.83
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	97.82
PRK15492	260	triosephosphate isomerase; Provisional	97.81
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	97.81
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	97.81
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	97.8
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	97.8
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	97.8
PTZ00333	255	triosephosphate isomerase; Provisional	97.79
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	97.78
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	97.75
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	97.75
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.75
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.74
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	97.73
PF00121	244	TIM: Triosephosphate isomerase; InterPro: IPR00065	97.73
PRK13958	207	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	97.72
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.71
PRK05265	239	pyridoxine 5'-phosphate synthase; Provisional	97.7
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	97.7
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.7
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	97.69
PLN02561	253	triosephosphate isomerase	97.69
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	97.68
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.68
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.68
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	97.67
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	97.66
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	97.65
PRK14024	241	phosphoribosyl isomerase A; Provisional	97.64
COG0157	280	NadC Nicotinate-nucleotide pyrophosphorylase [Coen	97.64
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.62
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.61
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	97.6
KOG4201	289	consensus Anthranilate synthase component II [Amin	97.6
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	97.59
COG3142	241	CutC Uncharacterized protein involved in copper re	97.58
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	97.57
PRK06852	304	aldolase; Validated	97.57
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	97.56
PRK08185	283	hypothetical protein; Provisional	97.56
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	97.56
PRK12331	448	oxaloacetate decarboxylase; Provisional	97.56
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.55
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	97.53
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	97.53
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	97.5
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	97.49
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	97.47
PF03740	239	PdxJ: Pyridoxal phosphate biosynthesis protein Pdx	97.46
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	97.45
cd01571	302	NAPRTase_B Nicotinate phosphoribosyltransferase (N	97.45
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	97.44
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	97.42
PRK06256	336	biotin synthase; Validated	97.41
PLN02979	366	glycolate oxidase	97.41
PLN02826	409	dihydroorotate dehydrogenase	97.41
PRK14041	467	oxaloacetate decarboxylase; Provisional	97.39
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	97.38
PRK07188	352	nicotinate phosphoribosyltransferase; Provisional	97.38
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	97.37
PRK09282	592	pyruvate carboxylase subunit B; Validated	97.36
TIGR00419	205	tim triosephosphate isomerase. Triosephosphate iso	97.36
cd00003	234	PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase	97.36
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	97.35
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	97.35
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	97.34
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	97.34
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	97.33
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	97.32
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	97.31
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	97.31
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.3
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	97.3
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	97.29
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	97.28
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	97.25
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	97.25
PRK13523	337	NADPH dehydrogenase NamA; Provisional	97.24
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	97.22
PRK09250	348	fructose-bisphosphate aldolase; Provisional	97.21
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	97.19
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	97.19
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	97.17
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	97.13
PLN02623	581	pyruvate kinase	97.13
PRK12330	499	oxaloacetate decarboxylase; Provisional	97.13
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	97.13
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	97.11
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	97.08
PRK14566	260	triosephosphate isomerase; Provisional	97.07
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	97.07
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	97.06
PLN02411	391	12-oxophytodienoate reductase	97.06
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	97.05
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	97.05
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	97.05
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	97.03
PRK07094	323	biotin synthase; Provisional	97.0
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	96.99
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	96.99
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	96.95
PRK14042	596	pyruvate carboxylase subunit B; Provisional	96.94
PLN02363	256	phosphoribosylanthranilate isomerase	96.92
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	96.9
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	96.9
PRK14040	593	oxaloacetate decarboxylase; Provisional	96.88
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	96.88
PRK10605	362	N-ethylmaleimide reductase; Provisional	96.79
PRK08508	279	biotin synthase; Provisional	96.78
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	96.76
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	96.73
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	96.72
PRK12581	468	oxaloacetate decarboxylase; Provisional	96.72
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	96.64
PRK13962	645	bifunctional phosphoglycerate kinase/triosephospha	96.63
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	96.62
TIGR03239	249	GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co	96.6
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	96.55
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	96.53
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	96.51
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	96.51
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	96.5
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	96.5
PLN02746	347	hydroxymethylglutaryl-CoA lyase	96.47
PRK05826	465	pyruvate kinase; Provisional	96.45
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	96.44
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	96.41
PLN02389	379	biotin synthase	96.41
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	96.39
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	96.38
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	96.37
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	96.36
COG5016	472	Pyruvate/oxaloacetate carboxyltransferase [Energy	96.36
PLN02535	364	glycolate oxidase	96.35
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	96.35
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	96.34
PRK08662	343	nicotinate phosphoribosyltransferase; Reviewed	96.34
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	96.33
PRK15452	443	putative protease; Provisional	96.33
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	96.31
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	96.3
PRK10558	256	alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro	96.3
PRK04165	450	acetyl-CoA decarbonylase/synthase complex subunit	96.3
TIGR01417	565	PTS_I_fam phosphoenolpyruvate-protein phosphotrans	96.29
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	96.27
cd00516	281	PRTase_typeII Phosphoribosyltransferase (PRTase) t	96.26
PRK12999	1146	pyruvate carboxylase; Reviewed	96.25
PF00724	341	Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox	96.23
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	96.21
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	96.2
KOG2335	358	consensus tRNA-dihydrouridine synthase [Translatio	96.18
COG0325	228	Predicted enzyme with a TIM-barrel fold [General f	96.17
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	96.17
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	96.15
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	96.14
PRK10128	267	2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	96.05
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	96.04
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	96.01
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	96.01
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	96.0
cd07945	280	DRE_TIM_CMS Leptospira interrogans citramalate syn	96.0
PTZ00300	454	pyruvate kinase; Provisional	95.97
PRK05835	307	fructose-bisphosphate aldolase; Provisional	95.93
TIGR02311	249	HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola	95.87
COG1411	229	Uncharacterized protein related to proFAR isomeras	95.82
COG1856	275	Uncharacterized homolog of biotin synthetase [Func	95.75
cd02067	119	B12-binding B12 binding domain (B12-BD). This doma	95.74
PRK12457	281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	95.72
cd07940	268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	95.71
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	95.7
TIGR02660	365	nifV_homocitr homocitrate synthase NifV. This fami	95.63
PF00224	348	PK: Pyruvate kinase, barrel domain; InterPro: IPR0	95.62
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	95.6
TIGR01418	782	PEP_synth phosphoenolpyruvate synthase. Also calle	95.57
PRK07709	285	fructose-bisphosphate aldolase; Provisional	95.57
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	95.54
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	95.53
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	95.5
COG2108	353	Uncharacterized conserved protein related to pyruv	95.49
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	95.48
PF06073	110	DUF934: Bacterial protein of unknown function (DUF	95.47
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	95.45
TIGR00284	499	dihydropteroate synthase-related protein. This pro	95.43
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	95.43
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	95.43
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	95.42
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	95.41
COG0854	243	PdxJ Pyridoxal phosphate biosynthesis protein [Coe	95.38
PRK06464	795	phosphoenolpyruvate synthase; Validated	95.37
PF03740	239	PdxJ: Pyridoxal phosphate biosynthesis protein Pdx	95.35
PRK01362	214	putative translaldolase; Provisional	95.33
PRK15447	301	putative protease; Provisional	95.3
PRK07084	321	fructose-bisphosphate aldolase; Provisional	95.28
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	95.27
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	95.26
KOG3055	263	consensus Phosphoribosylformimino-5-aminoimidazole	95.19
COG1891	235	Uncharacterized protein conserved in archaea [Func	95.18
TIGR01362	258	KDO8P_synth 3-deoxy-8-phosphooctulonate synthase.	95.17
TIGR00559	237	pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req	95.15
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	95.12
TIGR01520	357	FruBisAldo_II_A fructose-bisphosphate aldolase, cl	95.09
PRK05265	239	pyridoxine 5'-phosphate synthase; Provisional	95.09
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.06
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	95.05
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	95.05
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	95.01
TIGR00875	213	fsa_talC_mipB fructose-6-phosphate aldolase, TalC/	94.99
PF04309	175	G3P_antiterm: Glycerol-3-phosphate responsive anti	94.96
cd00003	234	PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase	94.94
TIGR01334	277	modD putative molybdenum utilization protein ModD.	94.9
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	94.83
PRK09197	350	fructose-bisphosphate aldolase; Provisional	94.79
PRK07535	261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	94.79
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	94.78
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	94.71
COG0826	347	Collagenase and related proteases [Posttranslation	94.67
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	94.62
PRK05198	264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	94.59
cd00288	480	Pyruvate_Kinase Pyruvate kinase (PK): Large allost	94.59
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	94.57
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	94.53
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	94.5
PRK15108	345	biotin synthase; Provisional	94.49
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	94.48
KOG0538	363	consensus Glycolate oxidase [Energy production and	94.47
PF02310	121	B12-binding: B12 binding domain; InterPro: IPR0061	94.46
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	94.42
cd02071	122	MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin	94.42
PRK09240	371	thiH thiamine biosynthesis protein ThiH; Reviewed	94.41
PRK02261	137	methylaspartate mutase subunit S; Provisional	94.4
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	94.38
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	94.33
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	94.32
PRK09389	488	(R)-citramalate synthase; Provisional	94.28
COG0069	485	GltB Glutamate synthase domain 2 [Amino acid trans	94.27
PRK06739	352	pyruvate kinase; Validated	94.1
cd00946	345	FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis	94.08
PRK02227	238	hypothetical protein; Provisional	94.02
PF09370	268	TIM-br_sig_trns: TIM-barrel signal transduction pr	93.91
PRK00915	513	2-isopropylmalate synthase; Validated	93.81
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	93.74
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	93.73
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	93.67
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	93.6
PLN02274	505	inosine-5'-monophosphate dehydrogenase	93.53
PF03599	386	CdhD: CO dehydrogenase/acetyl-CoA synthase delta s	93.5
cd00739	257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	93.47
TIGR01064	473	pyruv_kin pyruvate kinase. This enzyme is a homote	93.47
cd03316	357	MR_like Mandelate racemase (MR)-like subfamily of	93.44
PRK12656	222	fructose-6-phosphate aldolase; Reviewed	93.44
PLN02858	1378	fructose-bisphosphate aldolase	93.39
PRK12653	220	fructose-6-phosphate aldolase; Reviewed	93.33
KOG1643	247	consensus Triosephosphate isomerase [Carbohydrate	93.28
TIGR00676	272	fadh2 5,10-methylenetetrahydrofolate reductase, pr	93.25
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	93.24
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	93.13
COG1954	181	GlpP Glycerol-3-phosphate responsive antiterminato	93.04
PRK09206	470	pyruvate kinase; Provisional	93.03
COG0502	335	BioB Biotin synthase and related enzymes [Coenzyme	92.96
PLN03033	290	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	92.96
PF09587	250	PGA_cap: Bacterial capsule synthesis protein PGA_c	92.89
TIGR01501	134	MthylAspMutase methylaspartate mutase, S subunit.	92.78
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	92.69
PRK12344	524	putative alpha-isopropylmalate/homocitrate synthas	92.66
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	92.64
PRK10076	213	pyruvate formate lyase II activase; Provisional	92.57
cd03315	265	MLE_like Muconate lactonizing enzyme (MLE) like su	92.56
cd08207	406	RLP_NonPhot Ribulose bisphosphate carboxylase like	92.56
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	92.55
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	92.53
cd00453	340	FTBP_aldolase_II Fructose/tagarose-bisphosphate al	92.53
PF13277	253	YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.	92.5
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	92.41
PRK06267	350	hypothetical protein; Provisional	92.4
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	92.37
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	92.36
cd02070	201	corrinoid_protein_B12-BD B12 binding domain of cor	92.3
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	92.29
PRK09250	348	fructose-bisphosphate aldolase; Provisional	92.27
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	92.25
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	92.2
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	92.09
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	92.08
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	92.06
PRK02227	238	hypothetical protein; Provisional	92.04
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	92.01
PRK12655	220	fructose-6-phosphate aldolase; Reviewed	91.98
cd03319	316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	91.88
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	91.82
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	91.81
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	91.76
TIGR02351	366	thiH thiazole biosynthesis protein ThiH. Members t	91.75
smart00812	384	Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydro	91.73
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	91.72
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	91.7
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	91.67
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	91.61
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	91.6
PRK06096	284	molybdenum transport protein ModD; Provisional	91.58
cd02072	128	Glm_B12_BD B12 binding domain of glutamate mutase	91.53
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	91.51
cd06822	227	PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-	91.47
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	91.42
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	91.39
cd07947	279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	91.31
TIGR00486	249	YbgI_SA1388 dinuclear metal center protein, YbgI/S	91.28
PRK04452	319	acetyl-CoA decarbonylase/synthase complex subunit	91.27
PRK06354	590	pyruvate kinase; Provisional	91.24
PF14871	132	GHL6: Hypothetical glycosyl hydrolase 6	91.23
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	91.2
cd07947	279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	91.11
TIGR00677	281	fadh2_euk methylenetetrahydrofolate reductase, euk	91.06
TIGR03471	472	HpnJ hopanoid biosynthesis associated radical SAM	91.05
COG0320	306	LipA Lipoate synthase [Coenzyme metabolism]	91.03

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.7e-62  Score=383.35  Aligned_cols=181  Identities=57%  Similarity=0.898  Sum_probs=175.2

Q ss_pred             CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      ||||||||+||||..+++||+.++.|+||||||.+|++|++.++++|||+||||.|+  .+++.++++.||++|+++|++
T Consensus        38 MDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~--~~~~~r~i~~Ik~~G~kaGv~  115 (220)
T COG0036          38 MDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEA--TEHIHRTIQLIKELGVKAGLV  115 (220)
T ss_pred             cCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEecc--CcCHHHHHHHHHHcCCeEEEE
Confidence            999999999999999999999999999999999999999999999999999999996  678999999999999999999


Q ss_pred             EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661           81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~  160 (190)
                      +||.||++.++++++.+|+|++|||+|||+||+|+|.+++||+++|+++++++ ++.|+||||||.+|++++.++|||++
T Consensus       116 lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~  194 (220)
T COG0036         116 LNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERL-DILIEVDGGINLETIKQLAAAGADVF  194 (220)
T ss_pred             ECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHcCCCEE
Confidence            99999999999999999999999999999999999999999999999998766 88999999999999999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHHhhc
Q 029661          161 VAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       161 VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      |+||++|+++|..+.++.++....
T Consensus       195 VaGSalF~~~d~~~~i~~~~~~~~  218 (220)
T COG0036         195 VAGSALFGADDYKATIRELRGELL  218 (220)
T ss_pred             EEEEEEeCCccHHHHHHHHHHHhh
Confidence            999999999999999999987654

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=1.7e-60  Score=381.48  Aligned_cols=183  Identities=47%  Similarity=0.771  Sum_probs=176.6

Q ss_pred             CCccccCcCCCCHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV   79 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~   79 (190)
                      ||||||||++||++++++||+. ++.|+|+|||+.||++|++.+.++|||+|++|+|+  ..++.++++.+|++|+++|+
T Consensus        38 mDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea--~~~~~~~l~~Ir~~g~k~Gl  115 (223)
T PRK08745         38 MDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEA--SRHVHRTIQLIKSHGCQAGL  115 (223)
T ss_pred             ccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccC--cccHHHHHHHHHHCCCceeE
Confidence            9999999999999999999998 79999999999999999999999999999999997  46799999999999999999


Q ss_pred             EEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCE
Q 029661           80 VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANA  159 (190)
Q Consensus        80 ~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~  159 (190)
                      ++||.||++.++++++.+|+|++|||+|||+||+|++.+++||+++|+++++++.++.|+||||||.+|++++.++|||+
T Consensus       116 alnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi  195 (223)
T PRK08745        116 VLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADT  195 (223)
T ss_pred             EeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCE
Confidence            99999999999999999999999999999999999999999999999999888778899999999999999999999999


Q ss_pred             EEEcccccCCCCHHHHHHHHHHhhcc
Q 029661          160 LVAGSAVFGAKDYAEAIKGIKTSKRP  185 (190)
Q Consensus       160 ~VvGsaI~~~~dp~~~~~~l~~~~~~  185 (190)
                      +|+||+||+++||.++++++++.++.
T Consensus       196 ~V~GSaiF~~~d~~~~~~~lr~~~~~  221 (223)
T PRK08745        196 FVAGSAIFNAPDYAQVIAQMRAAVAA  221 (223)
T ss_pred             EEEChhhhCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999987653

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=4.8e-59  Score=373.77  Aligned_cols=183  Identities=36%  Similarity=0.674  Sum_probs=174.4

Q ss_pred             CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      ||||||||++||++++++||++|++|+|+|||+.||++|++.+.++|||+|++|+|+. ..++.++++.+|++|+++|++
T Consensus        36 MDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~-~~~~~~~i~~Ik~~G~kaGla  114 (229)
T PRK09722         36 MDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETI-NGQAFRLIDEIRRAGMKVGLV  114 (229)
T ss_pred             ccCccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCC-cchHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999999999999999999999999999999999999999999962 347899999999999999999


Q ss_pred             EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661           81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~  160 (190)
                      +||.||++.++++++.+|+|++|||+|||+||+|+|.+++||+++|++++++++++.|+||||||.+|++++.++|||++
T Consensus       115 lnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~  194 (229)
T PRK09722        115 LNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVF  194 (229)
T ss_pred             eCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEE
Confidence            99999999999999999999999999999999999999999999999999888889999999999999999999999999


Q ss_pred             EEcc-cccC-CCCHHHHHHHHHHhhc
Q 029661          161 VAGS-AVFG-AKDYAEAIKGIKTSKR  184 (190)
Q Consensus       161 VvGs-aI~~-~~dp~~~~~~l~~~~~  184 (190)
                      |+|| +||+ .+|+.+.++.+|+.++
T Consensus       195 V~Gss~iF~~~~d~~~~i~~l~~~~~  220 (229)
T PRK09722        195 IVGTSGLFNLDEDIDEAWDIMTAQIE  220 (229)
T ss_pred             EEChHHHcCCCCCHHHHHHHHHHHHH
Confidence            9996 5998 5789999999998665

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=100.00  E-value=6.3e-59  Score=372.02  Aligned_cols=179  Identities=27%  Similarity=0.407  Sum_probs=172.8

Q ss_pred             CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC--cEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA--KAG   78 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~--~~g   78 (190)
                      ||||||||++|||+++++||+  +.|+|+|||+.||++|++.+.++|||++++|+|+  ..++.++++.+|++|+  ++|
T Consensus        47 MDG~FVPNitfGp~~i~~i~~--~~~~DvHLMv~~P~~~i~~~~~aGad~It~H~Ea--~~~~~~~l~~Ik~~g~~~kaG  122 (228)
T PRK08091         47 ADGQFSPFFTVGAIAIKQFPT--HCFKDVHLMVRDQFEVAKACVAAGADIVTLQVEQ--THDLALTIEWLAKQKTTVLIG  122 (228)
T ss_pred             cCCCcCCccccCHHHHHHhCC--CCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccC--cccHHHHHHHHHHCCCCceEE
Confidence            999999999999999999984  7899999999999999999999999999999997  4678999999999999  999


Q ss_pred             EEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCC
Q 029661           79 VVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN  158 (190)
Q Consensus        79 ~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad  158 (190)
                      +++||.||++.++++++.+|+|++|||+|||+||+|++.+++||+++|++++++++++.|+||||||.+|++++.++|||
T Consensus       123 lalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD  202 (228)
T PRK08091        123 LCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQID  202 (228)
T ss_pred             EEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999999999998888899999999999999999999999


Q ss_pred             EEEEcccccCCCCHHHHHHHHHHhh
Q 029661          159 ALVAGSAVFGAKDYAEAIKGIKTSK  183 (190)
Q Consensus       159 ~~VvGsaI~~~~dp~~~~~~l~~~~  183 (190)
                      ++|+||+||+++|+++.+++|++.+
T Consensus       203 ~~V~GSalF~~~d~~~~i~~l~~~~  227 (228)
T PRK08091        203 WVVSGSALFSQGELKTTLKEWKSSL  227 (228)
T ss_pred             EEEEChhhhCCCCHHHHHHHHHHhh
Confidence            9999999999999999999999865

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=1.9e-58  Score=369.75  Aligned_cols=183  Identities=47%  Similarity=0.798  Sum_probs=176.6

Q ss_pred             CCccccCcCCCCHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV   79 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~   79 (190)
                      ||||||||++|||+++++||++ ++.|+|+||||.||++|++.+.++|||++++|.|+  ..++.++++.+|++|+++|+
T Consensus        34 mDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea--~~~~~~~l~~ik~~g~k~Gl  111 (220)
T PRK08883         34 MDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEA--SEHVDRTLQLIKEHGCQAGV  111 (220)
T ss_pred             ccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccC--cccHHHHHHHHHHcCCcEEE
Confidence            9999999999999999999998 79999999999999999999999999999999997  56799999999999999999


Q ss_pred             EEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCE
Q 029661           80 VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANA  159 (190)
Q Consensus        80 ~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~  159 (190)
                      ++||.||++.++++++.+|+|++|||+||++||+|.+.+++||+++|+++++++++++|+||||||++|++++.++|||+
T Consensus       112 alnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~  191 (220)
T PRK08883        112 VLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADM  191 (220)
T ss_pred             EeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCE
Confidence            99999999999999999999999999999999999999999999999999887888999999999999999999999999


Q ss_pred             EEEcccccCCCCHHHHHHHHHHhhcc
Q 029661          160 LVAGSAVFGAKDYAEAIKGIKTSKRP  185 (190)
Q Consensus       160 ~VvGsaI~~~~dp~~~~~~l~~~~~~  185 (190)
                      +|+||+||+++|+.++++++++.++.
T Consensus       192 vVvGSaIf~~~d~~~~i~~l~~~~~~  217 (220)
T PRK08883        192 FVAGSAIFGQPDYKAVIDEMRAELAK  217 (220)
T ss_pred             EEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999987654

>PRK08005 epimerase; Validated

Probab=100.00  E-value=3.9e-58  Score=364.21  Aligned_cols=175  Identities=31%  Similarity=0.462  Sum_probs=167.4

Q ss_pred             CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      ||||||||++||++++++||+.++.|+|+|||+.||++|++.+.++|||+|++|.|+  ..++.++++.+|++|+++|++
T Consensus        35 MDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea--~~~~~~~l~~Ik~~G~k~GlA  112 (210)
T PRK08005         35 EDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAES--VQNPSEILADIRAIGAKAGLA  112 (210)
T ss_pred             cCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccC--ccCHHHHHHHHHHcCCcEEEE
Confidence            999999999999999999999999999999999999999999999999999999997  467899999999999999999


Q ss_pred             EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661           81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~  160 (190)
                      +||.||++.++++++.+|+|++|+|+|||+||+|++.+++||+++|+++++    ..|+||||||.+|+++++++|||++
T Consensus       113 lnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~----~~I~VDGGI~~~~i~~l~~aGad~~  188 (210)
T PRK08005        113 LNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPA----AECWADGGITLRAARLLAAAGAQHL  188 (210)
T ss_pred             ECCCCCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhccc----CCEEEECCCCHHHHHHHHHCCCCEE
Confidence            999999999999999999999999999999999999999999999999865    3599999999999999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHH
Q 029661          161 VAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       161 VvGsaI~~~~dp~~~~~~l~~  181 (190)
                      |+||+||+++|+++.++.|..
T Consensus       189 V~GsaiF~~~d~~~~~~~~~~  209 (210)
T PRK08005        189 VIGRALFTTANYDVTLSQFTA  209 (210)
T ss_pred             EEChHhhCCCCHHHHHHHHhc
Confidence            999999998899999888753

>PRK14057 epimerase; Provisional

Probab=100.00  E-value=1.2e-57  Score=368.63  Aligned_cols=180  Identities=29%  Similarity=0.493  Sum_probs=172.8

Q ss_pred             CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-----
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-----   75 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-----   75 (190)
                      ||||||||++|||+++++||+  +.|+|+|||+.||++|++.+.++|||+|++|+|+  ..++.++++.+|++|+     
T Consensus        54 MDG~FVPNitfGp~~i~~i~~--~~p~DvHLMV~~P~~~i~~~~~aGad~It~H~Ea--~~~~~~~l~~Ir~~G~k~~~~  129 (254)
T PRK14057         54 MDGQFCPQFTVGPWAVGQLPQ--TFIKDVHLMVADQWTAAQACVKAGAHCITLQAEG--DIHLHHTLSWLGQQTVPVIGG  129 (254)
T ss_pred             cCCccCCccccCHHHHHHhcc--CCCeeEEeeeCCHHHHHHHHHHhCCCEEEEeecc--ccCHHHHHHHHHHcCCCcccc
Confidence            999999999999999999986  6899999999999999999999999999999997  4679999999999997     


Q ss_pred             ----cEEEEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHH
Q 029661           76 ----KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYK  151 (190)
Q Consensus        76 ----~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~  151 (190)
                          ++|+++||.||++.++++++.+|+|++|||+|||+||+|++.+++||+++|++++++++++.|+||||||.+|+++
T Consensus       130 ~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~  209 (254)
T PRK14057        130 EMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPS  209 (254)
T ss_pred             cccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHH
Confidence                5999999999999999999999999999999999999999999999999999999888889999999999999999


Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          152 VIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       152 ~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      +.++|||++|+||++|+++|+++.+++|++.+.
T Consensus       210 l~~aGad~~V~GSalF~~~d~~~~i~~l~~~~~  242 (254)
T PRK14057        210 LIAQGIDRVVSGSALFRDDRLVENTRSWRAMFK  242 (254)
T ss_pred             HHHCCCCEEEEChHhhCCCCHHHHHHHHHHHHh
Confidence            999999999999999998899999999987654

>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2e-56  Score=341.73  Aligned_cols=182  Identities=47%  Similarity=0.718  Sum_probs=172.5

Q ss_pred             CCccccCcCCCCHHHHHHhccCCCC--cEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDL--PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAG   78 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~~~~--~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g   78 (190)
                      ||||||||+|||+.+|+.||+.++.  ++|+||||.+|++|+++++++||+.+|||+|+  .+.+.++++.+|+.|+++|
T Consensus        39 MDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~E~--~q~~~~lv~~ir~~Gmk~G  116 (224)
T KOG3111|consen   39 MDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYEA--TQKPAELVEKIREKGMKVG  116 (224)
T ss_pred             ecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEEEee--ccCHHHHHHHHHHcCCeee
Confidence            9999999999999999999998666  59999999999999999999999999999997  5679999999999999999


Q ss_pred             EEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCC
Q 029661           79 VVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN  158 (190)
Q Consensus        79 ~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad  158 (190)
                      ++++|.||++.++++++.+|.+++|||+|||+||+|.++++.|++.+|+..+    +..|+||||++++|+..+.+||||
T Consensus       117 ~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp----~l~ievDGGv~~~ti~~~a~AGAN  192 (224)
T KOG3111|consen  117 LALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYP----NLDIEVDGGVGPSTIDKAAEAGAN  192 (224)
T ss_pred             EEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCC----CceEEecCCcCcchHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999996554    578999999999999999999999


Q ss_pred             EEEEcccccCCCCHHHHHHHHHHhhccccc
Q 029661          159 ALVAGSAVFGAKDYAEAIKGIKTSKRPQAV  188 (190)
Q Consensus       159 ~~VvGsaI~~~~dp~~~~~~l~~~~~~~~~  188 (190)
                      .+|+||++|++.||.++++.||++..+++.
T Consensus       193 ~iVaGsavf~a~d~~~vi~~lr~~v~~a~~  222 (224)
T KOG3111|consen  193 MIVAGSAVFGAADPSDVISLLRNSVEKAAC  222 (224)
T ss_pred             EEEecceeecCCCHHHHHHHHHHHHhhhhc
Confidence            999999999999999999999998776554

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=100.00  E-value=1.6e-56  Score=353.86  Aligned_cols=168  Identities=51%  Similarity=0.861  Sum_probs=153.7

Q ss_pred             CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      ||||||||++||++.+++||+++++|+|+|||+.||.+|++.+.++|+|+|++|.|+  .+++.++++.+|++|+++|++
T Consensus        34 MDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~--~~~~~~~i~~ik~~g~k~Gia  111 (201)
T PF00834_consen   34 MDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEA--TEDPKETIKYIKEAGIKAGIA  111 (201)
T ss_dssp             EBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGG--TTTHHHHHHHHHHTTSEEEEE
T ss_pred             cccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccc--hhCHHHHHHHHHHhCCCEEEE
Confidence            899999999999999999999999999999999999999999999999999999996  578999999999999999999


Q ss_pred             EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661           81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~  160 (190)
                      +||.||++.++++++.+|+|++|+|+||++||+|++.+++||+++|+++++++.++.|+||||||.+|++++.++|||++
T Consensus       112 lnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~  191 (201)
T PF00834_consen  112 LNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIF  191 (201)
T ss_dssp             E-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EE
T ss_pred             EECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEE
Confidence            99999999999999999999999999999999999999999999999999989999999999999999999999999999


Q ss_pred             EEcccccCCC
Q 029661          161 VAGSAVFGAK  170 (190)
Q Consensus       161 VvGsaI~~~~  170 (190)
                      |+||+||+++
T Consensus       192 V~Gs~iF~~~  201 (201)
T PF00834_consen  192 VAGSAIFKAD  201 (201)
T ss_dssp             EESHHHHTS-
T ss_pred             EECHHHhCCC
Confidence            9999999863

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=1.7e-50  Score=325.90  Aligned_cols=179  Identities=41%  Similarity=0.683  Sum_probs=169.3

Q ss_pred             CCccccCcCCCCHHHHHHhccCC-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV   79 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~   79 (190)
                      ||||||||++||++++++||+.+ ++++|+|||+.+|+.+++.++++|+|++|+|+|++ ..++.++++.+|++|+++|+
T Consensus        41 mDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~-~~~~~~~l~~ik~~G~~~gv  119 (228)
T PTZ00170         41 MDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEAT-EDDPKAVARKIREAGMKVGV  119 (228)
T ss_pred             ccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCC-chHHHHHHHHHHHCCCeEEE
Confidence            89999999999999999999985 99999999999999999999999999999999973 43489999999999999999


Q ss_pred             EEcCCCCHHHHHHhh--cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCC
Q 029661           80 VLNPATSLSAIECVL--DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGA  157 (190)
Q Consensus        80 ~i~p~t~~~~~~~~~--~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGa  157 (190)
                      +++|+||++.+++++  +.+|+|++|+++||++||.|.+..+++++++|+++++    +.|+||||||++|++.+.++||
T Consensus       120 al~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~----~~I~VdGGI~~~ti~~~~~aGa  195 (228)
T PTZ00170        120 AIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPH----LNIQVDGGINLETIDIAADAGA  195 (228)
T ss_pred             EECCCCCHHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhccc----CeEEECCCCCHHHHHHHHHcCC
Confidence            999999999999999  7899999999999999999999999999999998753    6799999999999999999999


Q ss_pred             CEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          158 NALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       158 d~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      |++|+||+||+++||.++++++++.++
T Consensus       196 d~iVvGsaI~~a~d~~~~~~~i~~~~~  222 (228)
T PTZ00170        196 NVIVAGSSIFKAKDRKQAIELLRESVQ  222 (228)
T ss_pred             CEEEEchHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998765

>PLN02334 ribulose-phosphate 3-epimerase

Probab=100.00  E-value=2.7e-44  Score=290.17  Aligned_cols=185  Identities=63%  Similarity=0.937  Sum_probs=174.3

Q ss_pred             CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEccc-CCCcchHHHHHHHHHHhCCcEEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE-QSSTIHLHRTLNQIKDLGAKAGV   79 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e-~~~~~~~~~~i~~i~~~g~~~g~   79 (190)
                      |||+|+||++||++.+++||+.++.++++|||++||.++++.+.++|||+|++|.| + ..+++.+.++.++++|+++|+
T Consensus        42 ~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q~-~~d~~~~~~~~i~~~g~~iGl  120 (229)
T PLN02334         42 MDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQA-STIHLHRLIQQIKSAGMKAGV  120 (229)
T ss_pred             ccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeeccc-cchhHHHHHHHHHHCCCeEEE
Confidence            89999999999999999999999999999999999999999999999999999999 2 145788999999999999999


Q ss_pred             EEcCCCCHHHHHHhhcc--cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCC
Q 029661           80 VLNPATSLSAIECVLDV--VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGA  157 (190)
Q Consensus        80 ~i~p~t~~~~~~~~~~~--~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGa  157 (190)
                      +++|+|+.+.++++++.  +|||++|+++||+++|.|.+..++++++++++..+    .+|+++||||++|++++.++||
T Consensus       121 s~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~----~~I~a~GGI~~e~i~~l~~aGa  196 (229)
T PLN02334        121 VLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPE----LDIEVDGGVGPSTIDKAAEAGA  196 (229)
T ss_pred             EECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCC----CcEEEeCCCCHHHHHHHHHcCC
Confidence            99999999999999988  99999999999999999999999999999987643    5799999999999999999999


Q ss_pred             CEEEEcccccCCCCHHHHHHHHHHhhccccccC
Q 029661          158 NALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV  190 (190)
Q Consensus       158 d~~VvGsaI~~~~dp~~~~~~l~~~~~~~~~~~  190 (190)
                      |++|+||+||+++||.+++++|++.++..+|||
T Consensus       197 d~vvvgsai~~~~d~~~~~~~l~~~~~~~~~~~  229 (229)
T PLN02334        197 NVIVAGSAVFGAPDYAEVISGLRASVEKAAVAV  229 (229)
T ss_pred             CEEEEChHHhCCCCHHHHHHHHHHHHHHhhccC
Confidence            999999999999999999999999999888876

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=100.00  E-value=1.1e-36  Score=241.72  Aligned_cols=178  Identities=60%  Similarity=0.963  Sum_probs=165.1

Q ss_pred             CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      |||+|+||+++|++.+++|++.++.++++|+|++++.+|++.+.++|+|++++|.+.  .++..+.++.+|++|.++++.
T Consensus        33 ~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~--~~~~~~~~~~~~~~g~~~~~~  110 (210)
T TIGR01163        33 MDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEA--SEHIHRLLQLIKDLGAKAGIV  110 (210)
T ss_pred             CCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCC--chhHHHHHHHHHHcCCcEEEE
Confidence            799999999999999999998888899999999999999999999999999999985  456788999999999999999


Q ss_pred             EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661           81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~  160 (190)
                      ++++|+.++++++...+|++++|+++||.+|+.|.+..++++++++++.++.+.++++.++||||++|++++.+.|||++
T Consensus       111 ~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~i  190 (210)
T TIGR01163       111 LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADIL  190 (210)
T ss_pred             ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEE
Confidence            99999999999988889999999999999999999999999999999987655557899999999999999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHH
Q 029661          161 VAGSAVFGAKDYAEAIKGIK  180 (190)
Q Consensus       161 VvGsaI~~~~dp~~~~~~l~  180 (190)
                      |+||+||+++||.+++++++
T Consensus       191 ivgsai~~~~d~~~~~~~~~  210 (210)
T TIGR01163       191 VAGSAIFGADDYKEVIRSLR  210 (210)
T ss_pred             EEChHHhCCCCHHHHHHHhC
Confidence            99999999999999988763

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=100.00  E-value=3e-36  Score=241.12  Aligned_cols=181  Identities=59%  Similarity=0.955  Sum_probs=165.6

Q ss_pred             CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      |||.|+||++++++.++++++.++.++++|||++++.++++.+.++|+|++++|.+.  .++..+.++.++++|+++|++
T Consensus        38 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~~--~~~~~~~~~~~~~~~~~~g~~  115 (220)
T PRK05581         38 MDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFHVEA--SEHIHRLLQLIKSAGIKAGLV  115 (220)
T ss_pred             ccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEeecc--chhHHHHHHHHHHcCCEEEEE
Confidence            799999999999999999998755789999999999999999999999999999986  467788999999999999999


Q ss_pred             EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661           81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~  160 (190)
                      ++|+|+.++++++...+|++++|+++||.+||.+.+..++++++++++.+.++.++.|+++||||++|++++.++|+|++
T Consensus       116 ~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~v  195 (220)
T PRK05581        116 LNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVF  195 (220)
T ss_pred             ECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence            99999999999888889999999999999999999999999999998876533335688999999999999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHHhh
Q 029661          161 VAGSAVFGAKDYAEAIKGIKTSK  183 (190)
Q Consensus       161 VvGsaI~~~~dp~~~~~~l~~~~  183 (190)
                      |+||+||+++||.++++++++.+
T Consensus       196 vvgSai~~~~d~~~~~~~~~~~~  218 (220)
T PRK05581        196 VAGSAVFGAPDYKEAIDSLRAEL  218 (220)
T ss_pred             EEChhhhCCCCHHHHHHHHHHHh
Confidence            99999999999999999998753

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=100.00  E-value=2.9e-34  Score=227.75  Aligned_cols=178  Identities=59%  Similarity=0.917  Sum_probs=164.4

Q ss_pred             CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      |||.|.|+..+|++.+++|++.++.++++|||++||.++++.+.++|+|++++|.+.  .++..+.++.++++|+++|++
T Consensus        34 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~~~--~~~~~~~~~~~~~~~~~~g~~  111 (211)
T cd00429          34 MDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHAEA--TDHLHRTIQLIKELGMKAGVA  111 (211)
T ss_pred             ccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECccc--hhhHHHHHHHHHHCCCeEEEE
Confidence            699999999999999999998667899999999999999999999999999999985  456788999999999999999


Q ss_pred             EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661           81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~  160 (190)
                      ++++|+.++++++...+|++++++++||.+|+.+.+..+++++++|++.++++.+.++.++|||+++|++++.++|||++
T Consensus       112 ~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~i  191 (211)
T cd00429         112 LNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVL  191 (211)
T ss_pred             ecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEE
Confidence            99989988888887779999999999999999999999999999999987666667999999999999999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHH
Q 029661          161 VAGSAVFGAKDYAEAIKGIK  180 (190)
Q Consensus       161 VvGsaI~~~~dp~~~~~~l~  180 (190)
                      |+||+||+++||.++++++|
T Consensus       192 ivgsai~~~~~~~~~~~~~~  211 (211)
T cd00429         192 VAGSALFGSDDYAEAIKELR  211 (211)
T ss_pred             EECHHHhCCCCHHHHHHHhC
Confidence            99999999999999998874

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=100.00  E-value=4.8e-33  Score=222.61  Aligned_cols=169  Identities=21%  Similarity=0.265  Sum_probs=153.8

Q ss_pred             CCCCHHHHHHhccC-CCCcEEEEEeecChHHHHH-HHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC
Q 029661            9 ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVP-DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS   86 (190)
Q Consensus         9 ~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~-~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~   86 (190)
                      +++|++.|++||+. +++++++|||+.|+.+++. .++++|+|++|+|+++ +.+++.++++.++++|+++|+++.|+++
T Consensus        40 ~~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a-~~~~i~~~~~~~~~~g~~~~V~llts~~  118 (216)
T PRK13306         40 LAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAA-HIPTIKAALKVAKEFNGEIQIELYGNWT  118 (216)
T ss_pred             HHhCHHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCC-CHHHHHHHHHHHHHcCCEEEEEECCCCC
Confidence            46899999999986 8999999999999988866 7899999999999998 4677999999999999999999999999


Q ss_pred             HHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcc
Q 029661           87 LSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS  164 (190)
Q Consensus        87 ~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGs  164 (190)
                      .+.+++.++  ..|+++.|++.||++||.|.+..+++|+++++.      ++.|+|+|||++++++.+.++|||++|+||
T Consensus       119 ~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~------~~~i~V~gGI~~~~~~~~~~~~ad~~VvGr  192 (216)
T PRK13306        119 WEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDM------GFKVSVTGGLVVEDLKLFKGIPVKTFIAGR  192 (216)
T ss_pred             HHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcC------CCeEEEcCCCCHhhHHHHhcCCCCEEEECC
Confidence            999887666  578999999999999999999999999887651      356999999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHhhc
Q 029661          165 AVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       165 aI~~~~dp~~~~~~l~~~~~  184 (190)
                      +||+++||.++++++++.++
T Consensus       193 ~I~~a~dp~~a~~~i~~~i~  212 (216)
T PRK13306        193 AIRGAADPAAAARAFKDEIA  212 (216)
T ss_pred             cccCCCCHHHHHHHHHHHHH
Confidence            99999999999999998875

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=100.00  E-value=7.4e-33  Score=237.09  Aligned_cols=166  Identities=21%  Similarity=0.294  Sum_probs=149.8

Q ss_pred             CCCCHHHHHHhccC-CCCcEEEEEeecChHHH-HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEE-EEcCCC
Q 029661            9 ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPAT   85 (190)
Q Consensus         9 ~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~-i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~-~i~p~t   85 (190)
                      ++||++.|++||+. +++++++|||+.||.++ ++.++++|+|++|+|+|+ +.+++.++++.+|++|+++++ ++||.|
T Consensus       210 ~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea-~~~ti~~ai~~akk~GikvgVD~lnp~t  288 (391)
T PRK13307        210 KKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLA-PISTIEKAIHEAQKTGIYSILDMLNVED  288 (391)
T ss_pred             HHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccC-CHHHHHHHHHHHHHcCCEEEEEEcCCCC
Confidence            46899999999997 88999999999999998 788999999999999997 356799999999999999999 999999


Q ss_pred             CHHHHHHhhcccceEEEEe-eecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcc
Q 029661           86 SLSAIECVLDVVDLVLIMS-VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS  164 (190)
Q Consensus        86 ~~~~~~~~~~~~d~i~~m~-v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGs  164 (190)
                      |.+.++++...+|+|++|+ ++||  +|   +..+++|+++|++    +.++.|+|||||+++++++++++|||++|+||
T Consensus       289 p~e~i~~l~~~vD~Vllht~vdp~--~~---~~~~~kI~~ikk~----~~~~~I~VdGGI~~eti~~l~~aGADivVVGs  359 (391)
T PRK13307        289 PVKLLESLKVKPDVVELHRGIDEE--GT---EHAWGNIKEIKKA----GGKILVAVAGGVRVENVEEALKAGADILVVGR  359 (391)
T ss_pred             HHHHHHHhhCCCCEEEEccccCCC--cc---cchHHHHHHHHHh----CCCCcEEEECCcCHHHHHHHHHcCCCEEEEeH
Confidence            9999999877899999997 8888  33   3366788888877    23578999999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHhhc
Q 029661          165 AVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       165 aI~~~~dp~~~~~~l~~~~~  184 (190)
                      +||+++||.++++++++.++
T Consensus       360 aIf~a~Dp~~aak~l~~~i~  379 (391)
T PRK13307        360 AITKSKDVRRAAEDFLNKLK  379 (391)
T ss_pred             HHhCCCCHHHHHHHHHHhhc
Confidence            99999999999999998764

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=99.98  E-value=1e-32  Score=220.45  Aligned_cols=171  Identities=21%  Similarity=0.262  Sum_probs=148.8

Q ss_pred             CCCCHHHHHHhccCCCCcEEEEEe-ec-ChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC
Q 029661            9 ITIGPLVVDALRPVTDLPLDVHLM-IV-EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS   86 (190)
Q Consensus         9 ~~~G~~~v~~i~~~~~~~i~~hlm-v~-dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~   86 (190)
                      ++||++++++||+.+++++|+|+| +. ++..+++.+.++|||++++|+|++ .+++.++++.++++|+++|++++|.+ 
T Consensus        40 ~~~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g-~~~l~~~i~~~~~~g~~~~v~~~~~~-  117 (215)
T PRK13813         40 LASGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTG-RDSLKAVVEAAAESGGKVFVVVEMSH-  117 (215)
T ss_pred             HhhCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCC-HHHHHHHHHHHHhcCCeEEEEEeCCC-
Confidence            469999999999988899999998 44 455567899999999999999974 55689999999999999999999976 


Q ss_pred             HHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCccc--HHHHHHcCCCEEEEcc
Q 029661           87 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN--AYKVIEAGANALVAGS  164 (190)
Q Consensus        87 ~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~--~~~~~~aGad~~VvGs  164 (190)
                      .+.++.+.+.+|.++.|+++||++||+|.+..+++|+++|+..++   ++.+ +||||++++  ++++.++|||++|+||
T Consensus       118 ~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~---~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr  193 (215)
T PRK13813        118 PGALEFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGD---ELKI-ISPGIGAQGGKAADAIKAGADYVIVGR  193 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCC---CcEE-EeCCcCCCCCCHHHHHHcCCCEEEECc
Confidence            444555566788999999999999999999889999999888753   4567 999999975  9999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHhhcc
Q 029661          165 AVFGAKDYAEAIKGIKTSKRP  185 (190)
Q Consensus       165 aI~~~~dp~~~~~~l~~~~~~  185 (190)
                      +||+++||.++++.+++.++.
T Consensus       194 ~I~~~~d~~~~~~~l~~~~~~  214 (215)
T PRK13813        194 SIYNAADPREAAKAINEEIRG  214 (215)
T ss_pred             ccCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999988753

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=99.97  E-value=5.3e-31  Score=214.30  Aligned_cols=159  Identities=20%  Similarity=0.259  Sum_probs=144.8

Q ss_pred             CCccccCcCC-----------CCHHHHHHhccCCCCcEEEEEeec-Ch------HHHHHHHHHcCCCEEEEcccCCCcch
Q 029661            1 MDGRFVPNIT-----------IGPLVVDALRPVTDLPLDVHLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIH   62 (190)
Q Consensus         1 mDg~fvpn~~-----------~G~~~v~~i~~~~~~~i~~hlmv~-dp------~~~i~~~~~~Gad~v~vh~e~~~~~~   62 (190)
                      |||+|++|.+           ++++.++++|+.+++|  +|||+. ||      ++|++.+.++|+|++++|..  +.++
T Consensus        42 ~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p--v~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl--~~ee  117 (242)
T cd04724          42 ADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIP--IVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDL--PPEE  117 (242)
T ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC--EEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCC--CHHH
Confidence            8999999977           9999999999877777  589998 98      88999999999999999766  2457


Q ss_pred             HHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcc-cchhhHHHHHHHHHHHhhcCCCCeEEE
Q 029661           63 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEV  140 (190)
Q Consensus        63 ~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~-~~~~~~~ki~~~~~~~~~~~~~~~i~v  140 (190)
                      ..++++.+|++|++++++++|+|+.++++++++ ..|+|++|++.|++++|. |.+...++++++|+..     +.+|.|
T Consensus       118 ~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-----~~pI~v  192 (242)
T cd04724         118 AEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT-----DLPIAV  192 (242)
T ss_pred             HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC-----CCcEEE
Confidence            889999999999999999999999999999998 789999999999999998 8888999999999864     478999


Q ss_pred             eCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          141 DGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       141 dGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      +|||| +++++++.++ ||++|+||++|+.
T Consensus       193 ggGI~~~e~~~~~~~~-ADgvVvGSaiv~~  221 (242)
T cd04724         193 GFGISTPEQAAEVAKY-ADGVIVGSALVKI  221 (242)
T ss_pred             EccCCCHHHHHHHHcc-CCEEEECHHHHHH
Confidence            99999 6799999999 9999999999863

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=99.97  E-value=8.4e-30  Score=202.22  Aligned_cols=167  Identities=21%  Similarity=0.288  Sum_probs=148.8

Q ss_pred             CCCCHHHHHHhccC-CCCcEEEEEeecChHHH-HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE-cCCC
Q 029661            9 ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPAT   85 (190)
Q Consensus         9 ~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~-i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i-~p~t   85 (190)
                      ..+|++.++.||+. ++..+.+|+|+.||+.+ ++.+.++|||++++|.++ +..++.++++.++++|+++++.+ +|.|
T Consensus        36 ~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~-~~~~~~~~i~~~~~~g~~~~~~~~~~~t  114 (206)
T TIGR03128        36 KNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA-DDATIKGAVKAAKKHGKEVQVDLINVKD  114 (206)
T ss_pred             HHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC-CHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence            45789999999986 77889999999999988 899999999999999997 34467899999999999999984 8999


Q ss_pred             CHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcc
Q 029661           86 SLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS  164 (190)
Q Consensus        86 ~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGs  164 (190)
                      +.+.+++..+ .+|+|   +++||+++|.+.+..+++++++++.++.    +.++++||||++|++++.++|||.+++||
T Consensus       115 ~~~~~~~~~~~g~d~v---~~~pg~~~~~~~~~~~~~i~~l~~~~~~----~~i~v~GGI~~~n~~~~~~~Ga~~v~vGs  187 (206)
T TIGR03128       115 KVKRAKELKELGADYI---GVHTGLDEQAKGQNPFEDLQTILKLVKE----ARVAVAGGINLDTIPDVIKLGPDIVIVGG  187 (206)
T ss_pred             hHHHHHHHHHcCCCEE---EEcCCcCcccCCCCCHHHHHHHHHhcCC----CcEEEECCcCHHHHHHHHHcCCCEEEEee
Confidence            9888887776 58877   5689999999998889999999988753    57899999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHhh
Q 029661          165 AVFGAKDYAEAIKGIKTSK  183 (190)
Q Consensus       165 aI~~~~dp~~~~~~l~~~~  183 (190)
                      +||+++||.++++.+++.+
T Consensus       188 ai~~~~d~~~~~~~l~~~~  206 (206)
T TIGR03128       188 AITKAADPAEAARQIRKLI  206 (206)
T ss_pred             hhcCCCCHHHHHHHHHhhC
Confidence            9999999999999998753

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=99.97  E-value=1.6e-29  Score=205.93  Aligned_cols=160  Identities=21%  Similarity=0.277  Sum_probs=139.3

Q ss_pred             HHHHHHhccCCCCcEEEEEe------ecChHHHHHHHHHcCCCEEEEc---ccCCCcchHHHHHHHHHHhCCcEEEEEcC
Q 029661           13 PLVVDALRPVTDLPLDVHLM------IVEPEQRVPDFIKAGADIVSVH---CEQSSTIHLHRTLNQIKDLGAKAGVVLNP   83 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlm------v~dp~~~i~~~~~~Gad~v~vh---~e~~~~~~~~~~i~~i~~~g~~~g~~i~p   83 (190)
                      ++.++++|+.+++|+  |||      +.+|.+|++.+.++|+|++++|   .|+  .+++.++++.++++|++++++++|
T Consensus        63 ~~~v~~vr~~~~~Pl--~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~--~~~~~~~~~~~~~~Gl~~~~~v~p  138 (244)
T PRK13125         63 WPLLEEVRKDVSVPI--ILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDY--PDDLEKYVEIIKNKGLKPVFFTSP  138 (244)
T ss_pred             HHHHHHHhccCCCCE--EEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCc--HHHHHHHHHHHHHcCCCEEEEECC
Confidence            578999998888898  677      6688999999999999999999   564  467889999999999999999999


Q ss_pred             CCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC-CcccHHHHHHcCCCEEEE
Q 029661           84 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVA  162 (190)
Q Consensus        84 ~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI-~~e~~~~~~~aGad~~Vv  162 (190)
                      .||.++++++++..|.+++|+++||++ ++|.+...++++++|++.++    .+|++|||| |+++++.+.++|||++|+
T Consensus       139 ~T~~e~l~~~~~~~~~~l~msv~~~~g-~~~~~~~~~~i~~lr~~~~~----~~i~v~gGI~~~e~i~~~~~~gaD~vvv  213 (244)
T PRK13125        139 KFPDLLIHRLSKLSPLFIYYGLRPATG-VPLPVSVERNIKRVRNLVGN----KYLVVGFGLDSPEDARDALSAGADGVVV  213 (244)
T ss_pred             CCCHHHHHHHHHhCCCEEEEEeCCCCC-CCchHHHHHHHHHHHHhcCC----CCEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence            999999999999999999999999985 58999999999999998753    369999999 799999999999999999


Q ss_pred             cccccC---CCCHHHHHHHHHH
Q 029661          163 GSAVFG---AKDYAEAIKGIKT  181 (190)
Q Consensus       163 GsaI~~---~~dp~~~~~~l~~  181 (190)
                      ||+||+   .++.++..+.+++
T Consensus       214 GSai~~~~~~~~~~~~~~~~~~  235 (244)
T PRK13125        214 GTAFIEELEKNGVESALNLLKK  235 (244)
T ss_pred             CHHHHHHHHhcCHHHHHHHHHH
Confidence            999996   3455544444443

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=99.96  E-value=4.3e-28  Score=198.56  Aligned_cols=164  Identities=16%  Similarity=0.221  Sum_probs=144.4

Q ss_pred             CHHHHHHhccC-CCCcEEEEEeecCh------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC
Q 029661           12 GPLVVDALRPV-TDLPLDVHLMIVEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA   84 (190)
Q Consensus        12 G~~~v~~i~~~-~~~~i~~hlmv~dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~   84 (190)
                      ..+.++++|+. +++|++ |||..||      ++|++.++++|+|++++|.+.  .++..++++.+|++|++++++++|+
T Consensus        74 ~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp--~ee~~~~~~~~~~~gl~~i~lv~P~  150 (256)
T TIGR00262        74 CFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLP--LEESGDLVEAAKKHGVKPIFLVAPN  150 (256)
T ss_pred             HHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCC--hHHHHHHHHHHHHCCCcEEEEECCC
Confidence            35678999976 789998 9999999      889999999999999999994  6789999999999999999999999


Q ss_pred             CCHHHHHHhhcccc-eEEEEeeecCCCCcc--cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661           85 TSLSAIECVLDVVD-LVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        85 t~~~~~~~~~~~~d-~i~~m~v~pG~~gq~--~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      |+.++++++++..+ +|++||+. |++||+  |.+...++++++|+..+     .+|.|+|||+ +++++++.++|||++
T Consensus       151 T~~eri~~i~~~~~gfiy~vs~~-G~TG~~~~~~~~~~~~i~~lr~~~~-----~pi~vgfGI~~~e~~~~~~~~GADgv  224 (256)
T TIGR00262       151 ADDERLKQIAEKSQGFVYLVSRA-GVTGARNRAASALNELVKRLKAYSA-----KPVLVGFGISKPEQVKQAIDAGADGV  224 (256)
T ss_pred             CCHHHHHHHHHhCCCCEEEEECC-CCCCCcccCChhHHHHHHHHHhhcC-----CCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence            99999999998887 99999997 999986  88999999999998753     4799999998 999999999999999


Q ss_pred             EEcccccCC-----CCHHHHHHHHHHhhc
Q 029661          161 VAGSAVFGA-----KDYAEAIKGIKTSKR  184 (190)
Q Consensus       161 VvGsaI~~~-----~dp~~~~~~l~~~~~  184 (190)
                      |+||+|++.     .++.+.++.+++.++
T Consensus       225 VvGSaiv~~~~~~~~~~~~~~~~i~~~~~  253 (256)
T TIGR00262       225 IVGSAIVKIIEENLNTPEKMLQALEEFVQ  253 (256)
T ss_pred             EECHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            999999962     266666666665544

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=99.95  E-value=2.6e-27  Score=187.11  Aligned_cols=161  Identities=24%  Similarity=0.298  Sum_probs=135.2

Q ss_pred             CCCCHHHHHHhccC-CCCcEEEEEeecChHHH-HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE-EcCCC
Q 029661            9 ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNPAT   85 (190)
Q Consensus         9 ~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~-i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~-i~p~t   85 (190)
                      .++|++.++.+|+. ++.++++|+|+.+|.++ ++.+.++|+|++++|.++. .+++.++++.+|++|++++++ ++|.|
T Consensus        37 ~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~-~~~~~~~i~~~~~~g~~~~v~~~~~~t  115 (202)
T cd04726          37 KSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP-LSTIKKAVKAAKKYGKEVQVDLIGVED  115 (202)
T ss_pred             HHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC-HHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence            46789999999986 89999999999999766 6889999999999999962 346788999999999999996 99999


Q ss_pred             CHHHHHHhhcccceEEEEeeecCCCCccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcc
Q 029661           86 SLSAIECVLDVVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS  164 (190)
Q Consensus        86 ~~~~~~~~~~~~d~i~~m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGs  164 (190)
                      +.+..+.+...+|++.+   .|++.++.+ .+...++++++++.     .+.++.++||||++|++++.++|||++++||
T Consensus       116 ~~e~~~~~~~~~d~v~~---~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGs  187 (202)
T cd04726         116 PEKRAKLLKLGVDIVIL---HRGIDAQAAGGWWPEDDLKKVKKL-----LGVKVAVAGGITPDTLPEFKKAGADIVIVGR  187 (202)
T ss_pred             HHHHHHHHHCCCCEEEE---cCcccccccCCCCCHHHHHHHHhh-----cCCCEEEECCcCHHHHHHHHhcCCCEEEEee
Confidence            99887633347898876   455544444 35667788877765     2478999999999999999999999999999


Q ss_pred             cccCCCCHHHHHHH
Q 029661          165 AVFGAKDYAEAIKG  178 (190)
Q Consensus       165 aI~~~~dp~~~~~~  178 (190)
                      +||+++||.+++++
T Consensus       188 ai~~~~d~~~~~~~  201 (202)
T cd04726         188 AITGAADPAEAARE  201 (202)
T ss_pred             hhcCCCCHHHHHhc
Confidence            99999999988765

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=99.94  E-value=6.6e-26  Score=177.99  Aligned_cols=166  Identities=25%  Similarity=0.312  Sum_probs=137.1

Q ss_pred             CCCHHHHHHhccC-CCCcEEEEEeecChHHH-HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE-EcCCCC
Q 029661           10 TIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNPATS   86 (190)
Q Consensus        10 ~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~-i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~-i~p~t~   86 (190)
                      ++|.+.|+.||+. |+.+++||+|+.|.+.+ .++++++|||++|+.+-+ +.+++..+++.++++|+.+.+. ++..++
T Consensus        41 ~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A-~~~TI~~~i~~A~~~~~~v~iDl~~~~~~  119 (217)
T COG0269          41 AEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA-DDATIKKAIKVAKEYGKEVQIDLIGVWDP  119 (217)
T ss_pred             HhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC-CHHHHHHHHHHHHHcCCeEEEEeecCCCH
Confidence            6899999999985 99999999999999887 678999999999999887 5789999999999999999996 555566


Q ss_pred             HHHHHHhh-cccceEEEEeeecCCCCc----ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEE
Q 029661           87 LSAIECVL-DVVDLVLIMSVNPGFGGQ----SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV  161 (190)
Q Consensus        87 ~~~~~~~~-~~~d~i~~m~v~pG~~gq----~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~V  161 (190)
                      .++.+.+- -.+|++.+   |-|.+-|    .+....+++++++.++      .+.++|.|||++++++.+...|+++||
T Consensus       120 ~~~~~~l~~~gvd~~~~---H~g~D~q~~G~~~~~~~l~~ik~~~~~------g~~vAVaGGI~~~~i~~~~~~~~~ivI  190 (217)
T COG0269         120 EQRAKWLKELGVDQVIL---HRGRDAQAAGKSWGEDDLEKIKKLSDL------GAKVAVAGGITPEDIPLFKGIGADIVI  190 (217)
T ss_pred             HHHHHHHHHhCCCEEEE---EecccHhhcCCCccHHHHHHHHHhhcc------CceEEEecCCCHHHHHHHhcCCCCEEE
Confidence            66655544 34898875   5565544    3333444455444432      268999999999999999999999999


Q ss_pred             EcccccCCCCHHHHHHHHHHhhcc
Q 029661          162 AGSAVFGAKDYAEAIKGIKTSKRP  185 (190)
Q Consensus       162 vGsaI~~~~dp~~~~~~l~~~~~~  185 (190)
                      +||+|+++.||.++++++++.+++
T Consensus       191 vGraIt~a~dp~~~a~~~~~~i~~  214 (217)
T COG0269         191 VGRAITGAKDPAEAARKFKEEIDK  214 (217)
T ss_pred             ECchhcCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999998864

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=99.92  E-value=2.1e-24  Score=177.03  Aligned_cols=163  Identities=13%  Similarity=0.165  Sum_probs=133.0

Q ss_pred             CHHHHHHhccCCCCcEEEEEee-cCh------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC
Q 029661           12 GPLVVDALRPVTDLPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA   84 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv-~dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~   84 (190)
                      ..+.++++|+.+++|+.  ||+ .||      ++|++.++++|+|++++|.+  +.++..++++.++++|+..++.++|+
T Consensus        79 ~~~~~~~~r~~~~~p~v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL--P~ee~~~~~~~~~~~gi~~I~lv~Pt  154 (263)
T CHL00200         79 ILSILSEVNGEIKAPIV--IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDL--PYEESDYLISVCNLYNIELILLIAPT  154 (263)
T ss_pred             HHHHHHHHhcCCCCCEE--EEecccHHHHhCHHHHHHHHHHcCCeEEEecCC--CHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46788889877788876  699 487      56899999999999999999  47789999999999999999999999


Q ss_pred             CCHHHHHHhhcccc-eEEEEeeecCCCCcc--cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661           85 TSLSAIECVLDVVD-LVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        85 t~~~~~~~~~~~~d-~i~~m~v~pG~~gq~--~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      ||.++++++.+.++ +|++|+ .+|++|++  +.+...+.++++|+.     .+.+|+|+|||+ +++++++.++|||++
T Consensus       155 T~~eri~~i~~~a~gFIY~vS-~~GvTG~~~~~~~~~~~~i~~ir~~-----t~~Pi~vGFGI~~~e~~~~~~~~GADGv  228 (263)
T CHL00200        155 SSKSRIQKIARAAPGCIYLVS-TTGVTGLKTELDKKLKKLIETIKKM-----TNKPIILGFGISTSEQIKQIKGWNINGI  228 (263)
T ss_pred             CCHHHHHHHHHhCCCcEEEEc-CCCCCCCCccccHHHHHHHHHHHHh-----cCCCEEEECCcCCHHHHHHHHhcCCCEE
Confidence            99999999999887 999999 68999985  334445555555554     357899999999 899999999999999


Q ss_pred             EEcccc---cCCCCHHHHHHHHHHhhc
Q 029661          161 VAGSAV---FGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       161 VvGsaI---~~~~dp~~~~~~l~~~~~  184 (190)
                      |+||++   +...++.+.++.+++.++
T Consensus       229 VVGSalv~~i~~~~~~~~~~~~~~~~~  255 (263)
T CHL00200        229 VIGSACVQILLGSSPEKGLDQLSEFCK  255 (263)
T ss_pred             EECHHHHHHHHhcChhhHHHHHHHHHH
Confidence            999998   544444444445544433

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=99.88  E-value=6.8e-22  Score=172.90  Aligned_cols=168  Identities=22%  Similarity=0.311  Sum_probs=140.6

Q ss_pred             CcC-CCCHHHHHHhccC-CC--CcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEE-EE
Q 029661            7 PNI-TIGPLVVDALRPV-TD--LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VL   81 (190)
Q Consensus         7 pn~-~~G~~~v~~i~~~-~~--~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~-~i   81 (190)
                      |+. .+|.+.+++|++. .+  +..|+|+|.. |..+++.+.++|||++++|.+. +..++.++++.++++|+++++ ++
T Consensus        38 p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~-g~~~v~~a~~aGAdgV~v~g~~-~~~~~~~~i~~a~~~G~~~~~g~~  115 (430)
T PRK07028         38 PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDT-GAIEVEMAAKAGADIVCILGLA-DDSTIEDAVRAARKYGVRLMADLI  115 (430)
T ss_pred             HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccc-hHHHHHHHHHcCCCEEEEecCC-ChHHHHHHHHHHHHcCCEEEEEec
Confidence            444 7789999999875 32  4557788877 8889999999999999999875 233567899999999999998 58


Q ss_pred             cCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661           82 NPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        82 ~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~  160 (190)
                      ++.|+.+.++++.+. +|||.   +.||+++|.+.+..++.++++++..     +++|.++|||+.+|+.++.++|||++
T Consensus       116 s~~t~~e~~~~a~~~GaD~I~---~~pg~~~~~~~~~~~~~l~~l~~~~-----~iPI~a~GGI~~~n~~~~l~aGAdgv  187 (430)
T PRK07028        116 NVPDPVKRAVELEELGVDYIN---VHVGIDQQMLGKDPLELLKEVSEEV-----SIPIAVAGGLDAETAAKAVAAGADIV  187 (430)
T ss_pred             CCCCHHHHHHHHHhcCCCEEE---EEeccchhhcCCChHHHHHHHHhhC-----CCcEEEECCCCHHHHHHHHHcCCCEE
Confidence            888988887777764 89984   4689988888777777787777542     37899999999999999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHHhhc
Q 029661          161 VAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       161 VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      ++||+||+++||.+.++.+++.++
T Consensus       188 ~vGsaI~~~~d~~~~~~~l~~~i~  211 (430)
T PRK07028        188 IVGGNIIKSADVTEAARKIREAID  211 (430)
T ss_pred             EEChHHcCCCCHHHHHHHHHHHHh
Confidence            999999999999999999998765

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=99.87  E-value=3.6e-22  Score=161.30  Aligned_cols=173  Identities=20%  Similarity=0.256  Sum_probs=127.6

Q ss_pred             CCccccCcCCCCHHHHHHhccC-CCCcEEEEE--eecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh--CC
Q 029661            1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHL--MIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GA   75 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~-~~~~i~~hl--mv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~--g~   75 (190)
                      ||++|+   +||++.+++|++. +.+++|+||  |.++|..+++.+.++|+|++|+|++++ .++++++.+.++++  +.
T Consensus        34 g~~~f~---~~G~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~~ag-~~~i~~~~~~~~~~~~~~  109 (230)
T PRK00230         34 GMELFT---AGGPQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHASGG-PRMMKAAREALEPKSRPL  109 (230)
T ss_pred             cHHHHH---hcCHHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEcccCC-HHHHHHHHHHhhccCCCe
Confidence            688997   8999999999987 678999999  999999999999999999999999984 67788888887764  45


Q ss_pred             cEEEEEcCCCCHHHHHHh-hcc--cceEEEE---eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc--
Q 029661           76 KAGVVLNPATSLSAIECV-LDV--VDLVLIM---SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK--  147 (190)
Q Consensus        76 ~~g~~i~p~t~~~~~~~~-~~~--~d~i~~m---~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e--  147 (190)
                      .+++.+-.+.+.+.+++. ...  -+++..+   ..+.|.+|-...+.   .++.+|+..++   ++ +.|.|||+++  
T Consensus       110 ~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~---~~~~ir~~~~~---~~-~~v~pGI~~~g~  182 (230)
T PRK00230        110 LIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQ---EAAAIREATGP---DF-LLVTPGIRPAGS  182 (230)
T ss_pred             EEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChH---HHHHHHhhcCC---ce-EEEcCCcCCCCC
Confidence            666654433333444321 111  1222211   22345444333332   24555665543   23 5789999987  


Q ss_pred             ---------cHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          148 ---------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       148 ---------~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                               ++.+++++|||++|+||+||+++||.++++++++.+.
T Consensus       183 ~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~  228 (230)
T PRK00230        183 DAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA  228 (230)
T ss_pred             CcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence                     8999999999999999999999999999999998764

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=99.84  E-value=3.1e-20  Score=147.51  Aligned_cols=149  Identities=23%  Similarity=0.234  Sum_probs=119.4

Q ss_pred             cEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEEEee
Q 029661           26 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSV  105 (190)
Q Consensus        26 ~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v  105 (190)
                      ..++|+|+.+   +++.+.++|+|++++|.+.  .  ....++.+++.+..+|+.++  |+.+..+.+...+|+|.++.+
T Consensus        63 ~~~~~l~~~~---~~~~a~~~gad~vh~~~~~--~--~~~~~~~~~~~~~~~g~~~~--t~~e~~~a~~~gaD~v~~~~~  133 (212)
T PRK00043         63 RYGVPLIVND---RVDLALAVGADGVHLGQDD--L--PVADARALLGPDAIIGLSTH--TLEEAAAALAAGADYVGVGPI  133 (212)
T ss_pred             HhCCeEEEeC---hHHHHHHcCCCEEecCccc--C--CHHHHHHHcCCCCEEEEeCC--CHHHHHHHhHcCCCEEEECCc
Confidence            4678888876   7889999999999998763  2  23455666778888998875  555555555567999999888


Q ss_pred             ecCCCCcccchh-hHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          106 NPGFGGQSFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       106 ~pG~~gq~~~~~-~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      .|+...+...+. .+++++++++..+    +++|.++||||++|+.++.++|||++++||+||+++||.+.++++++.++
T Consensus       134 ~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~  209 (212)
T PRK00043        134 FPTPTKKDAKAPQGLEGLREIRAAVG----DIPIVAIGGITPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFR  209 (212)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHHHhcC----CCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHh
Confidence            888766554433 3888888888763    27899999999999999999999999999999999999999999998877


Q ss_pred             ccc
Q 029661          185 PQA  187 (190)
Q Consensus       185 ~~~  187 (190)
                      .++
T Consensus       210 ~~~  212 (212)
T PRK00043        210 AAR  212 (212)
T ss_pred             hcC
Confidence            653

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=99.81  E-value=1.3e-19  Score=141.45  Aligned_cols=161  Identities=22%  Similarity=0.189  Sum_probs=124.9

Q ss_pred             CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus         1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      +|++|.+++.    .++++++.+. ++++|+|+.+   +++.+.++|+|++++....    .....++.+++.+..+|+.
T Consensus        34 ~~~~~~~~~~----~~~~i~~~~~-~~~~~l~~~~---~~~~a~~~g~~~vh~~~~~----~~~~~~~~~~~~~~~~g~~  101 (196)
T cd00564          34 KDLSARELLE----LARALRELCR-KYGVPLIIND---RVDLALAVGADGVHLGQDD----LPVAEARALLGPDLIIGVS  101 (196)
T ss_pred             CCCCHHHHHH----HHHHHHHHHH-HhCCeEEEeC---hHHHHHHcCCCEEecCccc----CCHHHHHHHcCCCCEEEee
Confidence            4666666653    4666766543 6788999987   6778899999977655431    2334566677778899988


Q ss_pred             EcCCCCHHHHHHhhc-ccceEEEEeeecCCCCccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCC
Q 029661           81 LNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN  158 (190)
Q Consensus        81 i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad  158 (190)
                      ++  |+ +.+.+... .+|+|.++.+.|+..++.+ .+..+++++++++..     ++++.++|||+++|+.++.++|+|
T Consensus       102 ~~--t~-~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~pv~a~GGi~~~~i~~~~~~Ga~  173 (196)
T cd00564         102 TH--SL-EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV-----EIPVVAIGGITPENAAEVLAAGAD  173 (196)
T ss_pred             CC--CH-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC-----CCCEEEECCCCHHHHHHHHHcCCC
Confidence            74  44 44455444 5999999999999887776 677788888887762     478999999999999999999999


Q ss_pred             EEEEcccccCCCCHHHHHHHHHH
Q 029661          159 ALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       159 ~~VvGsaI~~~~dp~~~~~~l~~  181 (190)
                      ++++||+||+++||.++++++++
T Consensus       174 ~i~~g~~i~~~~~~~~~~~~l~~  196 (196)
T cd00564         174 GVAVISAITGADDPAAAARELLA  196 (196)
T ss_pred             EEEEehHhhcCCCHHHHHHHHhC
Confidence            99999999999999999988863

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PLN02591 tryptophan synthase

Probab=99.80  E-value=2e-18  Score=140.67  Aligned_cols=163  Identities=18%  Similarity=0.272  Sum_probs=129.3

Q ss_pred             CHHHHHHhccCCCCcEEEEEeec-Ch------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA   84 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~-dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~   84 (190)
                      ..+.++++|+.+++|+.  ||++ ||      ++|++.++++|+|+++++..  +.++..++.+.++++|+.....+.|+
T Consensus        66 ~~~~~~~~r~~~~~p~i--lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDL--P~ee~~~~~~~~~~~gl~~I~lv~Pt  141 (250)
T PLN02591         66 VISMLKEVAPQLSCPIV--LFTYYNPILKRGIDKFMATIKEAGVHGLVVPDL--PLEETEALRAEAAKNGIELVLLTTPT  141 (250)
T ss_pred             HHHHHHHHhcCCCCCEE--EEecccHHHHhHHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            36788888876778886  6984 77      56899999999999999976  46778899999999999999999999


Q ss_pred             CCHHHHHHhhccc-ceEEEEeeecCCCCc--ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661           85 TSLSAIECVLDVV-DLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        85 t~~~~~~~~~~~~-d~i~~m~v~pG~~gq--~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      |+.++++.+.... ++|.+.++. |.+|.  .+.+...+.++++|+..     +.++.+++||+ +++++++.+.|||++
T Consensus       142 t~~~ri~~ia~~~~gFIY~Vs~~-GvTG~~~~~~~~~~~~i~~vk~~~-----~~Pv~vGFGI~~~e~v~~~~~~GADGv  215 (250)
T PLN02591        142 TPTERMKAIAEASEGFVYLVSST-GVTGARASVSGRVESLLQELKEVT-----DKPVAVGFGISKPEHAKQIAGWGADGV  215 (250)
T ss_pred             CCHHHHHHHHHhCCCcEEEeeCC-CCcCCCcCCchhHHHHHHHHHhcC-----CCceEEeCCCCCHHHHHHHHhcCCCEE
Confidence            9999999988764 677776764 55554  33455555588888753     47899999999 899999999999999


Q ss_pred             EEcccccCC----CCHHHHHHHHHHhhc
Q 029661          161 VAGSAVFGA----KDYAEAIKGIKTSKR  184 (190)
Q Consensus       161 VvGsaI~~~----~dp~~~~~~l~~~~~  184 (190)
                      |+||++.+.    +++.+..+.+.+.++
T Consensus       216 IVGSalVk~i~~~~~~~~~~~~~~~~~~  243 (250)
T PLN02591        216 IVGSAMVKALGEAKSPEEGLKRLEKLAK  243 (250)
T ss_pred             EECHHHHHhhhhccChhHHHHHHHHHHH
Confidence            999999752    356555555555444

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=99.75  E-value=2.3e-17  Score=134.91  Aligned_cols=164  Identities=21%  Similarity=0.272  Sum_probs=127.5

Q ss_pred             HHHHHHhc-cCCCCcEEEEEeec-Ch------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC
Q 029661           13 PLVVDALR-PVTDLPLDVHLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA   84 (190)
Q Consensus        13 ~~~v~~i~-~~~~~~i~~hlmv~-dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~   84 (190)
                      .+.++++| +.+++|+.+  |++ ||      ++|++.+.++|+|+++++..  +.++..++.+.++++|+.....+.|+
T Consensus        75 ~~~~~~ir~~~~~~pivl--m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDL--P~ee~~~~~~~~~~~gl~~I~lv~p~  150 (259)
T PF00290_consen   75 FELVKEIRKKEPDIPIVL--MTYYNPIFQYGIERFFKEAKEAGVDGLIIPDL--PPEESEELREAAKKHGLDLIPLVAPT  150 (259)
T ss_dssp             HHHHHHHHHHCTSSEEEE--EE-HHHHHHH-HHHHHHHHHHHTEEEEEETTS--BGGGHHHHHHHHHHTT-EEEEEEETT
T ss_pred             HHHHHHHhccCCCCCEEE--EeeccHHhccchHHHHHHHHHcCCCEEEEcCC--ChHHHHHHHHHHHHcCCeEEEEECCC
Confidence            56789999 678899988  884 65      46888999999999999876  46778889999999999999999999


Q ss_pred             CCHHHHHHhhcc-cceEEEEeeecCCCCcc--cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661           85 TSLSAIECVLDV-VDLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        85 t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~--~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      ||.++++++.+. -.+|+++++. |.+|..  +.....+.++++|+..     +.++.+++||+ +++++.+. .|||++
T Consensus       151 t~~~Ri~~i~~~a~gFiY~vs~~-GvTG~~~~~~~~l~~~i~~ik~~~-----~~Pv~vGFGI~~~e~~~~~~-~~aDGv  223 (259)
T PF00290_consen  151 TPEERIKKIAKQASGFIYLVSRM-GVTGSRTELPDELKEFIKRIKKHT-----DLPVAVGFGISTPEQAKKLA-AGADGV  223 (259)
T ss_dssp             S-HHHHHHHHHH-SSEEEEESSS-SSSSTTSSCHHHHHHHHHHHHHTT-----SS-EEEESSS-SHHHHHHHH-TTSSEE
T ss_pred             CCHHHHHHHHHhCCcEEEeeccC-CCCCCcccchHHHHHHHHHHHhhc-----CcceEEecCCCCHHHHHHHH-ccCCEE
Confidence            999999998876 4677776765 554432  4455677788888775     46899999999 69999987 999999


Q ss_pred             EEcccccC-----CCCHHHHHHHHHHhhcccc
Q 029661          161 VAGSAVFG-----AKDYAEAIKGIKTSKRPQA  187 (190)
Q Consensus       161 VvGsaI~~-----~~dp~~~~~~l~~~~~~~~  187 (190)
                      |+||++.+     .++..+.++++++..+.++
T Consensus       224 IVGSa~v~~i~~~~~~~~~~~~~~~~~~~~lk  255 (259)
T PF00290_consen  224 IVGSAFVKIIEENGDDAEKFLKELKEFVRELK  255 (259)
T ss_dssp             EESHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             EECHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence            99999875     2566777777777655443

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=99.75  E-value=6.5e-17  Score=131.62  Aligned_cols=161  Identities=19%  Similarity=0.278  Sum_probs=126.8

Q ss_pred             HHHHHHhccC-CCCcEEEEEee-cCh------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC
Q 029661           13 PLVVDALRPV-TDLPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA   84 (190)
Q Consensus        13 ~~~v~~i~~~-~~~~i~~hlmv-~dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~   84 (190)
                      .+.++.+|+. +++|+.+  |+ .||      ++|++.+.++|+|++++.--  +.++..++.+.++++|+.....+.|+
T Consensus        82 lel~~~~r~~~~~~Pivl--m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL--P~ee~~~~~~~~~~~gi~~I~lvaPt  157 (265)
T COG0159          82 LELVEEIRAKGVKVPIVL--MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDL--PPEESDELLKAAEKHGIDPIFLVAPT  157 (265)
T ss_pred             HHHHHHHHhcCCCCCEEE--EEeccHHHHhhHHHHHHHHHHcCCCEEEeCCC--ChHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            5678888854 7889888  87 587      56889999999999999866  46677889999999999999999999


Q ss_pred             CCHHHHHHhhccc-ceEEEEeeecCCCCcccc--hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661           85 TSLSAIECVLDVV-DLVLIMSVNPGFGGQSFI--ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        85 t~~~~~~~~~~~~-d~i~~m~v~pG~~gq~~~--~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      |+.++++++.+.. .+|++.++. |.+|..-.  ....+.++++|++.     +.++.|.+||+ +++++++.++ ||++
T Consensus       158 t~~~rl~~i~~~a~GFiY~vs~~-GvTG~~~~~~~~~~~~v~~vr~~~-----~~Pv~vGFGIs~~e~~~~v~~~-ADGV  230 (265)
T COG0159         158 TPDERLKKIAEAASGFIYYVSRM-GVTGARNPVSADVKELVKRVRKYT-----DVPVLVGFGISSPEQAAQVAEA-ADGV  230 (265)
T ss_pred             CCHHHHHHHHHhCCCcEEEEecc-cccCCCcccchhHHHHHHHHHHhc-----CCCeEEecCcCCHHHHHHHHHh-CCeE
Confidence            9999999998875 677777776 44443322  23577788888875     36899999999 8999999999 9999


Q ss_pred             EEcccccCC--CCH-HHHHHHHHHhhc
Q 029661          161 VAGSAVFGA--KDY-AEAIKGIKTSKR  184 (190)
Q Consensus       161 VvGsaI~~~--~dp-~~~~~~l~~~~~  184 (190)
                      ||||+|.+.  ++. ++.++++++.++
T Consensus       231 IVGSAiV~~i~~~~~~~~~~~~~~l~~  257 (265)
T COG0159         231 IVGSAIVKIIEEGLDEEALEELRALVK  257 (265)
T ss_pred             EEcHHHHHHHHhccchhhHHHHHHHHH
Confidence            999999863  221 344455554443

>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=99.72  E-value=1.8e-17  Score=132.64  Aligned_cols=169  Identities=15%  Similarity=0.200  Sum_probs=116.9

Q ss_pred             CCCCHHHHHHhccC-CCCcEEEEEeecChHH-HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE---EEEEcC
Q 029661            9 ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQ-RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA---GVVLNP   83 (190)
Q Consensus         9 ~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~-~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~---g~~i~p   83 (190)
                      +++|++.|++|++. +++++.+|||+.|..+ ..+.+.++|+|.+++|.-+ ..+++.++.+.++++|.++   -+.+..
T Consensus        40 ~~~G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~~~~-g~~~i~~a~~~a~~~~~~~~~~llgV~t  118 (218)
T PRK13305         40 LNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICAA-PLATVEKGHAVAQRCGGEIQIELFGNWT  118 (218)
T ss_pred             HHhCHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEecCC-CHHHHHHHHHHHHhcCCcccceEEEecC
Confidence            35799999999985 7899999999999654 4567889999999999775 4677888888777656542   222321


Q ss_pred             CCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEc
Q 029661           84 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG  163 (190)
Q Consensus        84 ~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvG  163 (190)
                      ....+.++++ ...++++..+......|..+.+.-   +..+|+..+   .++++.|.|||++++.....+.++|++|+|
T Consensus       119 ~~~~~~l~~~-g~~~~v~h~a~~a~~~G~v~s~~e---~~~ir~~~~---~~~~i~VtpGIr~~~~~~~dq~rvd~iVVG  191 (218)
T PRK13305        119 LDDARDWHRI-GVRQAIYHRGRDAQASGQQWGEAD---LARMKALSD---IGLELSITGGITPADLPLFKDIRVKAFIAG  191 (218)
T ss_pred             cchHHHHHHc-CCHHHHHHHHHHHHHhCCCCCHHH---HHHHHHHhC---CCCcEEEeCCcCccccccccccCCCEEEEC
Confidence            1222233322 112333332322212233333333   344455443   246789999999999999999999999999


Q ss_pred             ccccCCCCHHHHHHHHHHhhcc
Q 029661          164 SAVFGAKDYAEAIKGIKTSKRP  185 (190)
Q Consensus       164 saI~~~~dp~~~~~~l~~~~~~  185 (190)
                      |+|++++||.++++++++.++.
T Consensus       192 R~It~A~dP~~aa~~i~~~i~~  213 (218)
T PRK13305        192 RALAGAANPAQVAADFHAQIDA  213 (218)
T ss_pred             CcccCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998754

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=99.71  E-value=5e-16  Score=127.32  Aligned_cols=147  Identities=19%  Similarity=0.232  Sum_probs=118.1

Q ss_pred             CHHHHHHhc-cCCCCcEEEEEee-cCh------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC
Q 029661           12 GPLVVDALR-PVTDLPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP   83 (190)
Q Consensus        12 G~~~v~~i~-~~~~~~i~~hlmv-~dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p   83 (190)
                      ..+.++++| +.+++|+.  +|+ .||      ++|++.++++|+|+++++..  +.++..++.+.++++|+.....+.|
T Consensus        76 ~~~~~~~~r~~~~~~p~v--lm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL--p~ee~~~~~~~~~~~gl~~I~lvap  151 (258)
T PRK13111         76 VFELVREIREKDPTIPIV--LMTYYNPIFQYGVERFAADAAEAGVDGLIIPDL--PPEEAEELRAAAKKHGLDLIFLVAP  151 (258)
T ss_pred             HHHHHHHHHhcCCCCCEE--EEecccHHhhcCHHHHHHHHHHcCCcEEEECCC--CHHHHHHHHHHHHHcCCcEEEEeCC
Confidence            467888898 45788987  588 476      46899999999999999865  4678889999999999999999999


Q ss_pred             CCCHHHHHHhhcc-cceEEEEeeecCCCCc--ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCE
Q 029661           84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANA  159 (190)
Q Consensus        84 ~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq--~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~  159 (190)
                      +|+.++++.+... .++|.+.++. |.+|.  .+.+...+.++++|+..     +.++.+.|||+ +++++++.+. ||+
T Consensus       152 ~t~~eri~~i~~~s~gfIY~vs~~-GvTG~~~~~~~~~~~~i~~vk~~~-----~~pv~vGfGI~~~e~v~~~~~~-ADG  224 (258)
T PRK13111        152 TTTDERLKKIASHASGFVYYVSRA-GVTGARSADAADLAELVARLKAHT-----DLPVAVGFGISTPEQAAAIAAV-ADG  224 (258)
T ss_pred             CCCHHHHHHHHHhCCCcEEEEeCC-CCCCcccCCCccHHHHHHHHHhcC-----CCcEEEEcccCCHHHHHHHHHh-CCE
Confidence            9999999988765 4677666664 43333  34455666788888754     36899999995 7999999875 999


Q ss_pred             EEEcccccCC
Q 029661          160 LVAGSAVFGA  169 (190)
Q Consensus       160 ~VvGsaI~~~  169 (190)
                      +|+||++.+.
T Consensus       225 viVGSaiv~~  234 (258)
T PRK13111        225 VIVGSALVKI  234 (258)
T ss_pred             EEEcHHHHHH
Confidence            9999998754

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=99.66  E-value=2.9e-16  Score=125.53  Aligned_cols=159  Identities=20%  Similarity=0.256  Sum_probs=106.3

Q ss_pred             CCCHHHHHHhccCCCCcEEEEEeecChH----HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCC
Q 029661           10 TIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT   85 (190)
Q Consensus        10 ~~G~~~v~~i~~~~~~~i~~hlmv~dp~----~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t   85 (190)
                      +||++.+++|++.. .++.+|+|..|..    .+++.++++|||++|+|++++ .+++.++++.++++|.++.+....+.
T Consensus        36 ~~G~~~v~~l~~~~-~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g-~~~l~~~~~~~~~~~~~v~~v~~lss  113 (213)
T TIGR01740        36 DGGDKIIDELAKLN-KLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAG-SESVEAAKEAASEGGRGLLAVTELTS  113 (213)
T ss_pred             hcCHHHHHHHHHcC-CCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCC-HHHHHHHHHHhhcCCCeEEEEEcCCC
Confidence            68999999999864 4677888887753    467778999999999999984 66789999999988865544332222


Q ss_pred             CHH-HHHHhhcccceEEEEee---ecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc-----------cHH
Q 029661           86 SLS-AIECVLDVVDLVLIMSV---NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAY  150 (190)
Q Consensus        86 ~~~-~~~~~~~~~d~i~~m~v---~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e-----------~~~  150 (190)
                      +-+ .+....  .+.++-++.   ..|..|-...|.   .++++|+..+    + .+.+.+||+++           |++
T Consensus       114 ~~~~~~~~~~--~~~v~~~a~~~~~~g~~g~v~~~~---~~~~ir~~~~----~-~~~vtPGI~~~g~~~~dq~~~~~~~  183 (213)
T TIGR01740       114 MGSLDYGEDT--MEKVLEYAKEAKAFGLDGPVCSAE---EAKEIRKFTG----D-FLILTPGIRLQSKGADDQQRVVTLE  183 (213)
T ss_pred             CChhhhCcCH--HHHHHHHHHHhhhcCCeEEEeCHH---HHHHHHHhcC----C-ceEEeCCcCCCCCCcCCccccCCHH
Confidence            211 111100  011111111   123333222233   3455555543    2 35699999976           348


Q ss_pred             HHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 029661          151 KVIEAGANALVAGSAVFGAKDYAEAIKGIK  180 (190)
Q Consensus       151 ~~~~aGad~~VvGsaI~~~~dp~~~~~~l~  180 (190)
                      .+.++|||++|+||+||+++||.+++++++
T Consensus       184 ~~~~~Gad~iVvGr~I~~~~d~~~~~~~~~  213 (213)
T TIGR01740       184 DAKEAGADVIIVGRGIYAAEDPVEAAKRIR  213 (213)
T ss_pred             HHHHcCCCEEEEChhhcCCCCHHHHHHHhC
Confidence            899999999999999999999999988764

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=99.61  E-value=7.1e-15  Score=116.87  Aligned_cols=145  Identities=22%  Similarity=0.240  Sum_probs=116.8

Q ss_pred             cEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcc-cceEEEEe
Q 029661           26 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMS  104 (190)
Q Consensus        26 ~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~-~d~i~~m~  104 (190)
                      ...+-|+++|   .++.+.+.|||+||+..+.    .+.....++...++.+|++++   +.+.+.+.... +|||.+-.
T Consensus        63 ~~~v~liINd---~~dlA~~~~AdGVHlGq~D----~~~~~ar~~~~~~~iIG~S~h---~~eea~~A~~~g~DYv~~Gp  132 (211)
T COG0352          63 KYGVPLIIND---RVDLALAVGADGVHLGQDD----MPLAEARELLGPGLIIGLSTH---DLEEALEAEELGADYVGLGP  132 (211)
T ss_pred             HhCCeEEecC---cHHHHHhCCCCEEEcCCcc----cchHHHHHhcCCCCEEEeecC---CHHHHHHHHhcCCCEEEECC
Confidence            3456678888   7788889999999999883    233455566667788898887   56556665544 99999999


Q ss_pred             eecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          105 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       105 v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      +.|..+-+.-.+..++.++++++..     +.++.+.||||++|+.++.++|||++.+-|+||.++||.++++++++.++
T Consensus       133 ifpT~tK~~~~~~G~~~l~~~~~~~-----~iP~vAIGGi~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~  207 (211)
T COG0352         133 IFPTSTKPDAPPLGLEGLREIRELV-----NIPVVAIGGINLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALE  207 (211)
T ss_pred             cCCCCCCCCCCccCHHHHHHHHHhC-----CCCEEEEcCCCHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHH
Confidence            9987664444677788888877764     26899999999999999999999999999999999999999999998775


Q ss_pred             c
Q 029661          185 P  185 (190)
Q Consensus       185 ~  185 (190)
                      .
T Consensus       208 ~  208 (211)
T COG0352         208 D  208 (211)
T ss_pred             h
Confidence            3

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=99.59  E-value=5e-14  Score=112.66  Aligned_cols=156  Identities=21%  Similarity=0.300  Sum_probs=116.8

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE   91 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~   91 (190)
                      +++.++.+|+..++|+.+.-.+.++ ..++.+.++|||+|++.....+.+++.++++.++..|+.+.+.++   ..+.++
T Consensus        60 ~~~~~~~i~~~v~iPi~~~~~i~~~-~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~---~~~e~~  135 (217)
T cd00331          60 SLEDLRAVREAVSLPVLRKDFIIDP-YQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVH---DEEELE  135 (217)
T ss_pred             CHHHHHHHHHhcCCCEEECCeecCH-HHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEEC---CHHHHH
Confidence            5678888888778999875555666 478899999999999876542234677888888889999877775   444455


Q ss_pred             Hhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661           92 CVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus        92 ~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      +..+ .+|++.+   + +.+++.+.+. ++.++++++.++   .+.++.+.|||+ ++++.++.++|||++++||+|++.
T Consensus       136 ~~~~~g~~~i~~---t-~~~~~~~~~~-~~~~~~l~~~~~---~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~  207 (217)
T cd00331         136 RALALGAKIIGI---N-NRDLKTFEVD-LNTTERLAPLIP---KDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRA  207 (217)
T ss_pred             HHHHcCCCEEEE---e-CCCccccCcC-HHHHHHHHHhCC---CCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence            5443 3788864   3 4455555444 366777766542   135788899997 699999999999999999999999


Q ss_pred             CCHHHHHHHH
Q 029661          170 KDYAEAIKGI  179 (190)
Q Consensus       170 ~dp~~~~~~l  179 (190)
                      +||.+++++|
T Consensus       208 ~~p~~~~~~~  217 (217)
T cd00331         208 PDPGAALREL  217 (217)
T ss_pred             CCHHHHHHhC
Confidence            9999888754

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=99.57  E-value=1.4e-13  Score=113.26  Aligned_cols=160  Identities=19%  Similarity=0.222  Sum_probs=118.3

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE   91 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~   91 (190)
                      +.+.++.+|+..++|+...=.+.+|. -++.+.++|||+|++.+...+.+++.++++.+++.|+.+.+.++.....++..
T Consensus        99 ~~~~l~~v~~~v~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~  177 (260)
T PRK00278         99 SLEYLRAARAAVSLPVLRKDFIIDPY-QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERAL  177 (260)
T ss_pred             CHHHHHHHHHhcCCCEEeeeecCCHH-HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence            57888999988889998766677777 58889999999999998753245799999999999999988887433333322


Q ss_pred             HhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCC
Q 029661           92 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD  171 (190)
Q Consensus        92 ~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~d  171 (190)
                      +  ..+|+|.+   + +.+-+.|.+. ++...++.+.+++  ..+.|+..|+.++++++.+.++|+|++++||+|++++|
T Consensus       178 ~--~gadiIgi---n-~rdl~~~~~d-~~~~~~l~~~~p~--~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~d  248 (260)
T PRK00278        178 K--LGAPLIGI---N-NRNLKTFEVD-LETTERLAPLIPS--DRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADD  248 (260)
T ss_pred             H--cCCCEEEE---C-CCCcccccCC-HHHHHHHHHhCCC--CCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCC
Confidence            2  25788754   4 2233344333 5566666665532  11345555555799999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 029661          172 YAEAIKGIKT  181 (190)
Q Consensus       172 p~~~~~~l~~  181 (190)
                      |.+++++|..
T Consensus       249 p~~~~~~l~~  258 (260)
T PRK00278        249 PGAALRELLG  258 (260)
T ss_pred             HHHHHHHHhc
Confidence            9999988754

>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]

Probab=99.50  E-value=2.4e-13  Score=110.13  Aligned_cols=167  Identities=17%  Similarity=0.216  Sum_probs=112.5

Q ss_pred             CCCCHHHHHHhccCCCCcEEEEEeecChH----HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCc-EEEEEcC
Q 029661            9 ITIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK-AGVVLNP   83 (190)
Q Consensus         9 ~~~G~~~v~~i~~~~~~~i~~hlmv~dp~----~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~-~g~~i~p   83 (190)
                      +.+|+.++++|++... ++.+|||..|..    .+++.+.+.|+|++|+|+..+ .+.+.++.+.++++|.+ .++..++
T Consensus        48 ~~~g~~~~~el~~~~~-~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~~~G-~~~~~~~~e~~~~~~~~vl~vT~lt  125 (240)
T COG0284          48 AFFGADILEELKARGK-KVFLDLKLADIPNTVALAAKAAADLGADAVTVHAFGG-FDMLRAAKEALEAGGPFVLAVTSLT  125 (240)
T ss_pred             HhccHHHHHHHHHhCC-ceEEeeecccchHHHHHHHHHhhhcCCcEEEEeCcCC-HHHHHHHHHHHhhcCceEEEEEeCC
Confidence            3579999999998643 889999999963    456778889999999999874 56788888888888852 2334443


Q ss_pred             CCCHHHHHH--hh-cccceEEEEe---eecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc------c----
Q 029661           84 ATSLSAIEC--VL-DVVDLVLIMS---VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP------K----  147 (190)
Q Consensus        84 ~t~~~~~~~--~~-~~~d~i~~m~---v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~------e----  147 (190)
                      ++.-..+..  +. +..++|+-++   -..|..|-.-.++-   .+++|+..+   .++.| +..||++      +    
T Consensus       126 s~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~~e---~~~ir~~~g---~~~~i-ltPGIg~~~~~gdQ~~~~  198 (240)
T COG0284         126 SMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAEE---VAAIREILG---PDFLI-LTPGIGAGSQGGDQGRVM  198 (240)
T ss_pred             CchhhhhhhccccchHHHHHHHHHHHhccCCceEEEcCHHH---HHHHHHhcC---CCcEE-ECCCcCcCcCCCCccccc
Confidence            333221111  00 1112232222   23354443333333   344444442   34544 8999998      3    


Q ss_pred             cHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          148 NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       148 ~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      |..+.+.+|+|.+|+||+|+.++||.++++++.+.+.
T Consensus       199 t~~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~  235 (240)
T COG0284         199 TPGEAVRAGADYIVVGRPITQAGDPVAAARAIAREIA  235 (240)
T ss_pred             CHHHHHhcCCCEEEEChhhhcCCChHHHHHHHHHHHH
Confidence            5788899999999999999999999999998877654

>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=99.49  E-value=1.4e-12  Score=101.54  Aligned_cols=145  Identities=21%  Similarity=0.264  Sum_probs=105.9

Q ss_pred             HHHHHhccC-CCCcEEEEEee-cCh------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCC
Q 029661           14 LVVDALRPV-TDLPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT   85 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv-~dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t   85 (190)
                      +.+++.|.- ..+|+.  ||. .||      ++|+..++++||++.++...  +.++...+-+++|++|+.....+.|+|
T Consensus        84 emvk~ar~~gvt~PIi--LmgYYNPIl~yG~e~~iq~ak~aGanGfiivDl--PpEEa~~~Rne~~k~gislvpLvaPsT  159 (268)
T KOG4175|consen   84 EMVKEARPQGVTCPII--LMGYYNPILRYGVENYIQVAKNAGANGFIIVDL--PPEEAETLRNEARKHGISLVPLVAPST  159 (268)
T ss_pred             HHHHHhcccCccccee--eeecccHHHhhhHHHHHHHHHhcCCCceEeccC--ChHHHHHHHHHHHhcCceEEEeeCCCC
Confidence            445555543 234554  488 588      56899999999999999766  466778889999999999999999999


Q ss_pred             CHHHHHHhhcccce-EEEEeeecCCCCc-ccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661           86 SLSAIECVLDVVDL-VLIMSVNPGFGGQ-SFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV  161 (190)
Q Consensus        86 ~~~~~~~~~~~~d~-i~~m~v~pG~~gq-~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V  161 (190)
                      +.++++-+.+.+|- |++.+.. |..|. .-. ...-+.+.++|+..+    +.+++|.+|++ +|+.+++-.. ||++|
T Consensus       160 tdeRmell~~~adsFiYvVSrm-G~TG~~~svn~~l~~L~qrvrk~t~----dtPlAVGFGvst~EHf~qVgsv-aDGVv  233 (268)
T KOG4175|consen  160 TDERMELLVEAADSFIYVVSRM-GVTGTRESVNEKLQSLLQRVRKATG----DTPLAVGFGVSTPEHFKQVGSV-ADGVV  233 (268)
T ss_pred             hHHHHHHHHHhhcceEEEEEec-cccccHHHHHHHHHHHHHHHHHhcC----CCceeEeeccCCHHHHHhhhhh-ccceE
Confidence            99998887776664 4444443 55442 211 222333455555543    46899999999 7999998777 99999


Q ss_pred             EcccccC
Q 029661          162 AGSAVFG  168 (190)
Q Consensus       162 vGsaI~~  168 (190)
                      +||.|..
T Consensus       234 vGSkiv~  240 (268)
T KOG4175|consen  234 VGSKIVK  240 (268)
T ss_pred             ecHHHHH
Confidence            9999873

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=99.49  E-value=1.5e-12  Score=100.62  Aligned_cols=156  Identities=24%  Similarity=0.255  Sum_probs=111.0

Q ss_pred             cccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHH----HHHHcCCCEEEEcccCCC-cchHHHHHHHHHHh--CCc
Q 029661            4 RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP----DFIKAGADIVSVHCEQSS-TIHLHRTLNQIKDL--GAK   76 (190)
Q Consensus         4 ~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~----~~~~~Gad~v~vh~e~~~-~~~~~~~i~~i~~~--g~~   76 (190)
                      ++..+...+++.++.+++..+.|+.++++..++..+..    .+.++|+|+|.+|.+... .+...+.++.+++.  ++.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~  116 (200)
T cd04722          37 DPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVK  116 (200)
T ss_pred             CcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCce
Confidence            44444445545577777777899999999999877664    789999999999988510 01256788888887  899


Q ss_pred             EEEEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-ccHHHHHHc
Q 029661           77 AGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEA  155 (190)
Q Consensus        77 ~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-e~~~~~~~a  155 (190)
                      +++.+++.++.+...-....+|++.+....++..++...+.....+++++.     ..+.++.++|||+. +++.++.++
T Consensus       117 v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~pi~~~GGi~~~~~~~~~~~~  191 (200)
T cd04722         117 VVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR-----GSKVPVIAGGGINDPEDAAEALAL  191 (200)
T ss_pred             EEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-----cCCCCEEEECCCCCHHHHHHHHHh
Confidence            999998877654431112248999887777665554433322233333332     23578999999997 999999999


Q ss_pred             CCCEEEEcc
Q 029661          156 GANALVAGS  164 (190)
Q Consensus       156 Gad~~VvGs  164 (190)
                      |||.+.+||
T Consensus       192 Gad~v~vgs  200 (200)
T cd04722         192 GADGVIVGS  200 (200)
T ss_pred             CCCEEEecC
Confidence            999999997

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway

Probab=99.48  E-value=3e-13  Score=108.33  Aligned_cols=160  Identities=20%  Similarity=0.254  Sum_probs=107.8

Q ss_pred             CCCHHHHHHhccCCCCcEEEEEeecChHH----HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCC
Q 029661           10 TIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT   85 (190)
Q Consensus        10 ~~G~~~v~~i~~~~~~~i~~hlmv~dp~~----~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t   85 (190)
                      ++|++.+++|++.. +++.+|+|..|...    +++.+++.|+|++|+|+.++ .++++.+++.+++++..+.+....+.
T Consensus        36 ~~g~~~i~~l~~~~-~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~~~G-~~~l~~~~~~~~~~~~~~~~v~~lss  113 (216)
T cd04725          36 AAGPEIVKELRELG-FLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPYGG-SDMLKAALEAAEEKGKGLFAVTVLSS  113 (216)
T ss_pred             hcCHHHHHHHHHCC-CcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECCcCC-HHHHHHHHHHHhccCCeEEEEEcCCC
Confidence            37999999999864 89999999999754    44557889999999999874 67889999998887766654433332


Q ss_pred             -CHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc----------cH
Q 029661           86 -SLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK----------NA  149 (190)
Q Consensus        86 -~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e----------~~  149 (190)
                       +-+.+++....     +..+.-+..+-|..|-...+.-.+.++   +..   +.++. .+.+||+++          ++
T Consensus       114 ~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~~~~i~---~~~---~~~~~-~ltPGI~~~~~~~dq~r~~~~  186 (216)
T cd04725         114 PGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATEPEALR---RAL---GPDFL-ILTPGIGAQGSGDDQKRGGTP  186 (216)
T ss_pred             CCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcchHHHH---Hhh---CCCCe-EEcCCcCCCCCccccccccCH
Confidence             23333321110     001111112223233222223333342   222   12454 589999998          99


Q ss_pred             HHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 029661          150 YKVIEAGANALVAGSAVFGAKDYAEAIKG  178 (190)
Q Consensus       150 ~~~~~aGad~~VvGsaI~~~~dp~~~~~~  178 (190)
                      .++.++|++++++||+|++++||.+++++
T Consensus       187 ~~a~~~g~~~ivvGR~I~~a~~p~~~~~~  215 (216)
T cd04725         187 EDAIRAGADYIVVGRPITQAADPVAAAEA  215 (216)
T ss_pred             HHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence            99999999999999999999999988875

In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.

>PRK07695 transcriptional regulator TenI; Provisional

Probab=99.46  E-value=2.6e-12  Score=101.67  Aligned_cols=142  Identities=18%  Similarity=0.185  Sum_probs=100.3

Q ss_pred             EEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeec
Q 029661           29 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNP  107 (190)
Q Consensus        29 ~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~p  107 (190)
                      ..+++++   ..+.+.+.|+|++++....   ..+....+..  .+..+|+.++   +.+.+.+..+ .+||+.+-.+.|
T Consensus        58 ~~liin~---~~~la~~~~~~gvHl~~~~---~~~~~~r~~~--~~~~ig~s~~---s~e~a~~a~~~Gadyi~~g~v~~  126 (201)
T PRK07695         58 SKLIIND---RVDIALLLNIHRVQLGYRS---FSVRSVREKF--PYLHVGYSVH---SLEEAIQAEKNGADYVVYGHVFP  126 (201)
T ss_pred             CeEEEEC---HHHHHHHcCCCEEEeCccc---CCHHHHHHhC--CCCEEEEeCC---CHHHHHHHHHcCCCEEEECCCCC
Confidence            4677887   5677888999999997652   1232222211  2567777643   4444555433 589997655555


Q ss_pred             CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhccc
Q 029661          108 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ  186 (190)
Q Consensus       108 G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~~~  186 (190)
                      ....+...+..++.++++++..     ++++.+.|||+++++.++.+.|+|++.+||+|++++||.++++++++.+++.
T Consensus       127 t~~k~~~~~~g~~~l~~~~~~~-----~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~~  200 (201)
T PRK07695        127 TDCKKGVPARGLEELSDIARAL-----SIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKKW  200 (201)
T ss_pred             CCCCCCCCCCCHHHHHHHHHhC-----CCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhhc
Confidence            4433333333456666666543     4789999999999999999999999999999999999999999999887653

>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=99.44  E-value=8e-13  Score=114.43  Aligned_cols=149  Identities=17%  Similarity=0.103  Sum_probs=113.4

Q ss_pred             EEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEEEeee
Q 029661           27 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVN  106 (190)
Q Consensus        27 i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~  106 (190)
                      ..+.|.++|   +++.+.+.|||+|++..+.  ..  ....+.+...+..+|++.+.  ..|..+.....+|||.+-.+.
T Consensus       260 ~gv~LiIND---~~dlAl~~gAdGVHLGQeD--L~--~~~aR~ilg~~~iIGvStHs--~eEl~~A~~~gaDYI~lGPIF  330 (437)
T PRK12290        260 YNAQVFIND---YWQLAIKHQAYGVHLGQED--LE--EANLAQLTDAGIRLGLSTHG--YYELLRIVQIQPSYIALGHIF  330 (437)
T ss_pred             hCCEEEEEC---HHHHHHHcCCCEEEcChHH--cc--hhhhhhhcCCCCEEEEecCC--HHHHHHHhhcCCCEEEECCcc
Confidence            356777888   7888999999999999874  21  22344444467788888752  333222223468999999999


Q ss_pred             cCCCCc-ccchhhHHHHHHHHHHHhh----cCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661          107 PGFGGQ-SFIESQVKKISDLRRMCLE----KGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       107 pG~~gq-~~~~~~~~ki~~~~~~~~~----~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~  181 (190)
                      |..+-+ ...|..++++++++++...    ...++++.+.|||+++|+.++.++||+++.+-|+|++++||.+++++|++
T Consensus       331 pT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~  410 (437)
T PRK12290        331 PTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQ  410 (437)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHH
Confidence            876654 4567778888888877642    11357899999999999999999999999999999999999999999998


Q ss_pred             hhc
Q 029661          182 SKR  184 (190)
Q Consensus       182 ~~~  184 (190)
                      .+.
T Consensus       411 ~~~  413 (437)
T PRK12290        411 VMA  413 (437)
T ss_pred             HHh
Confidence            664

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.42  E-value=3.1e-12  Score=102.78  Aligned_cols=143  Identities=14%  Similarity=0.018  Sum_probs=101.0

Q ss_pred             EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHh-hcccceEEEEeee
Q 029661           28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV-LDVVDLVLIMSVN  106 (190)
Q Consensus        28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~-~~~~d~i~~m~v~  106 (190)
                      .+.|.++|   .++.+.+.|+|+||+..+.   ..+.+.-+ ....+..+|++.  .++.+...+. -..+|||.+-.+.
T Consensus        71 gv~liINd---~~dlA~~~~adGVHLg~~d---~~~~~~r~-~~~~~~iiG~s~--~~s~~~a~~A~~~gaDYv~~Gpv~  141 (221)
T PRK06512         71 GAAALIAG---DSRIAGRVKADGLHIEGNL---AALAEAIE-KHAPKMIVGFGN--LRDRHGAMEIGELRPDYLFFGKLG  141 (221)
T ss_pred             CCEEEEeC---HHHHHHHhCCCEEEECccc---cCHHHHHH-hcCCCCEEEecC--CCCHHHHHHhhhcCCCEEEECCCC
Confidence            45667777   6888899999999998763   12322221 112234455542  2344433332 2458999998776


Q ss_pred             cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhcc
Q 029661          107 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP  185 (190)
Q Consensus       107 pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~~  185 (190)
                      +.. -....|..++.++++++..     ++++.+-||||++|+.++.++||+++.+-|+|++++||.++++++++.++.
T Consensus       142 t~t-K~~~~p~gl~~l~~~~~~~-----~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~  214 (221)
T PRK06512        142 ADN-KPEAHPRNLSLAEWWAEMI-----EIPCIVQAGSDLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDE  214 (221)
T ss_pred             CCC-CCCCCCCChHHHHHHHHhC-----CCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhh
Confidence            432 2224455677777766653     478999999999999999999999999999999999999999999987763

>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP

Probab=99.41  E-value=1.2e-13  Score=111.21  Aligned_cols=165  Identities=21%  Similarity=0.252  Sum_probs=102.6

Q ss_pred             CCC----HHHHHHhccCCCCcEEEEEeecChHHHHHH-------HHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-Cc-
Q 029661           10 TIG----PLVVDALRPVTDLPLDVHLMIVEPEQRVPD-------FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AK-   76 (190)
Q Consensus        10 ~~G----~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~-------~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~-   76 (190)
                      .+|    ++.++.+++.. +++.+|+|+.|...+...       +.+.|+|++|+|+.++ .+++..+++.++++| .. 
T Consensus        38 ~~G~~~l~~~i~~l~~~~-~~I~~D~K~~Dig~t~~~~~~~~~~~~~~gaD~vTv~~~~G-~~tl~~~~~~a~~~~~~~~  115 (226)
T PF00215_consen   38 AYGLEALPEIIEELKERG-KPIFLDLKLGDIGNTVARYAEAGFAAFELGADAVTVHPFAG-DDTLEAAVKAAKKHGRKGV  115 (226)
T ss_dssp             HHCHHHHHHHHHHHHHTT-SEEEEEEEE-SSHHHHHHHHHSCHHHHTTTESEEEEEGTTH-HHHHHHHHHHHHHTTESEE
T ss_pred             cCChhhHHHHHHHHHHhc-CCEeeeeeecccchHHHHHHHHhhhhhcCCCcEEEEeccCC-HHHHHHHHHHHhccCCcce
Confidence            468    99999999865 899999999997654333       3689999999999984 788999999999998 34 


Q ss_pred             EEEEEcCCCCHHHHHHhhc-----ccceEEEEeeecCCCCcccchhhHHHHHHH----HHHHhhcCCCC-eEEEeCCCCc
Q 029661           77 AGVVLNPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDL----RRMCLEKGVNP-WIEVDGGVGP  146 (190)
Q Consensus        77 ~g~~i~p~t~~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~----~~~~~~~~~~~-~i~vdGGI~~  146 (190)
                      +++.+-.+...+.+..+..     .+....-+...-|..|-...+.-. .+++.    ..+.+  +... ..+..||++.
T Consensus       116 ~~v~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~G~v~~~~~~-~~~~~~~~~~~l~P--Gi~~~~~~~~~~~~~  192 (226)
T PF00215_consen  116 FVVDLLSNPDSEDLQDLGLGVDQEIVHRAADLAAKAGVDGIVCSATEP-AIRKAGPNFKILTP--GIGAIQGAVAGGQKR  192 (226)
T ss_dssp             EEEESTTSTTHHHHHHHHCTHHHHHHHHHHHHHHHTTEEEEEETTTCH-HHHHHTTTSEEEEE--SBSSSTCEECSSHHC
T ss_pred             EEEEecCCCCHHHHHhhhcccHHHHHHHHHHhhccccccCcccccccc-cccccccchhhccC--CCCcccccCcccccc
Confidence            4444443333333333110     011000000011111211111111 23322    11111  2223 5677888887


Q ss_pred             ccHHHHHH-cCCCEEEEcccccCCCCHHHHHHHH
Q 029661          147 KNAYKVIE-AGANALVAGSAVFGAKDYAEAIKGI  179 (190)
Q Consensus       147 e~~~~~~~-aGad~~VvGsaI~~~~dp~~~~~~l  179 (190)
                      .+.+.+.. .|+|++|+||+|++++||.++++++
T Consensus       193 ~~~~~~~~~~g~d~iiVGR~I~~a~dp~~aa~~i  226 (226)
T PF00215_consen  193 ATTPAAAKQAGADIIIVGRAITKAEDPREAAEEI  226 (226)
T ss_dssp             HHHHHHHHHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred             cccHHHHHhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence            77776655 8999999999999999999999874

In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=99.37  E-value=1.9e-11  Score=100.25  Aligned_cols=160  Identities=17%  Similarity=0.240  Sum_probs=109.5

Q ss_pred             CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcch-HHHHHHHHHHhCCcEEEEEcCCCCH-H
Q 029661           11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH-LHRTLNQIKDLGAKAGVVLNPATSL-S   88 (190)
Q Consensus        11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~-~~~~i~~i~~~g~~~g~~i~p~t~~-~   88 (190)
                      -+|+.|++|++..++|+....+..+ ..-.+.+.++|+|+|   .++. ..+ ..+.+..+|.. .++- +++....+ |
T Consensus        54 ~~p~~I~~I~~~V~iPVig~~kigh-~~Ea~~L~~~GvDiI---DeTe-~lrPade~~~~~K~~-f~vp-fmad~~~l~E  126 (287)
T TIGR00343        54 SDPKMIKEIMDAVSIPVMAKVRIGH-FVEAQILEALGVDYI---DESE-VLTPADWTFHIDKKK-FKVP-FVCGARDLGE  126 (287)
T ss_pred             CCHHHHHHHHHhCCCCEEEEeeccH-HHHHHHHHHcCCCEE---EccC-CCCcHHHHHHHHHHH-cCCC-EEccCCCHHH
Confidence            3789999999988999999777655 223566899999999   3432 222 35666666553 2333 34444444 5


Q ss_pred             HHHHhhcccceEEEEeeecCCCCc-------------------------------ccchhhHHHHHHHHHHHhhcCCCCe
Q 029661           89 AIECVLDVVDLVLIMSVNPGFGGQ-------------------------------SFIESQVKKISDLRRMCLEKGVNPW  137 (190)
Q Consensus        89 ~~~~~~~~~d~i~~m~v~pG~~gq-------------------------------~~~~~~~~ki~~~~~~~~~~~~~~~  137 (190)
                      .++.+-..+|+|-- +.+.|+ |.                               +-....++.|+++++..     +++
T Consensus       127 Alrai~~GadmI~T-t~e~gT-g~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~-----~iP  199 (287)
T TIGR00343       127 ALRRINEGAAMIRT-KGEAGT-GNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG-----KLP  199 (287)
T ss_pred             HHHHHHCCCCEEec-cccCCC-ccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhC-----CCC
Confidence            55555566888741 223333 32                               00122345555555432     367


Q ss_pred             EE--EeCCC-CcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          138 IE--VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       138 i~--vdGGI-~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      +.  ..||| |++++..+.+.|||.+++||+||+++||.+.++++.+.+.
T Consensus       200 VV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~  249 (287)
T TIGR00343       200 VVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATT  249 (287)
T ss_pred             EEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence            87  89999 8999999999999999999999999999999999988654

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PRK04302 triosephosphate isomerase; Provisional

Probab=99.36  E-value=8.2e-11  Score=94.66  Aligned_cols=164  Identities=18%  Similarity=0.241  Sum_probs=107.8

Q ss_pred             CHHHHHHhccCCCCcEEEEEeec-Ch-----HHHHHHHHHcCCCEEEEcc-cC-CCcchHHHHHHHHHHhCCcEEEEEcC
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIV-EP-----EQRVPDFIKAGADIVSVHC-EQ-SSTIHLHRTLNQIKDLGAKAGVVLNP   83 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~-dp-----~~~i~~~~~~Gad~v~vh~-e~-~~~~~~~~~i~~i~~~g~~~g~~i~p   83 (190)
                      +...++.+++.+++++-+.=+-. .+     +.+++.+.++|+|++.+.. |- .+.+++.+.++.++++|+.+.+.+..
T Consensus        44 ~~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~  123 (223)
T PRK04302         44 QALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNN  123 (223)
T ss_pred             CHHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCC
Confidence            33456666665677776532222 11     2357889999999999854 21 02345778899999999998854432


Q ss_pred             CCCHHHHHHhhcc-cceEEEEeee-cCCC-C-cccchhhHH-HHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCC
Q 029661           84 ATSLSAIECVLDV-VDLVLIMSVN-PGFG-G-QSFIESQVK-KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGA  157 (190)
Q Consensus        84 ~t~~~~~~~~~~~-~d~i~~m~v~-pG~~-g-q~~~~~~~~-ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGa  157 (190)
                         .+.++.+.+. .|+|.++++. -|++ + +...|+.++ .++.+|+.    ..+.++.+.|||+ ++.+..+.+.|+
T Consensus       124 ---~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~----~~~~pvi~GggI~~~e~~~~~~~~ga  196 (223)
T PRK04302        124 ---PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV----NPDVKVLCGAGISTGEDVKAALELGA  196 (223)
T ss_pred             ---HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc----cCCCEEEEECCCCCHHHHHHHHcCCC
Confidence               4445554433 6888877653 2332 1 112233322 23333332    2247899999997 788989999999


Q ss_pred             CEEEEcccccCCCCHHHHHHHHHHh
Q 029661          158 NALVAGSAVFGAKDYAEAIKGIKTS  182 (190)
Q Consensus       158 d~~VvGsaI~~~~dp~~~~~~l~~~  182 (190)
                      |++++||++.+.+||.+.++.|.+.
T Consensus       197 dGvlVGsa~l~~~~~~~~~~~~~~~  221 (223)
T PRK04302        197 DGVLLASGVVKAKDPEAALRDLVSP  221 (223)
T ss_pred             CEEEEehHHhCCcCHHHHHHHHHhh
Confidence            9999999999999999998887653

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=99.36  E-value=3.8e-11  Score=96.82  Aligned_cols=143  Identities=15%  Similarity=0.240  Sum_probs=102.8

Q ss_pred             HHHHHhccCCCCcEEEEEeecC----hHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661           14 LVVDALRPVTDLPLDVHLMIVE----PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA   89 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~d----p~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~   89 (190)
                      +.++.+++..+.++.+-+...+    ..++++.+.++|+|.|++|...     ....++.+++.++.++..+.+   .+.
T Consensus        43 ~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~-----~~~~~~~~~~~~i~~i~~v~~---~~~  114 (236)
T cd04730          43 AEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFGP-----PAEVVERLKAAGIKVIPTVTS---VEE  114 (236)
T ss_pred             HHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCCC-----CHHHHHHHHHcCCEEEEeCCC---HHH
Confidence            4456666544457778888875    3467888999999999998652     356788888889888776543   344


Q ss_pred             HHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-ccHHHHHHcCCCEEEEccccc
Q 029661           90 IECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus        90 ~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-e~~~~~~~aGad~~VvGsaI~  167 (190)
                      ++.+.+ .+|++.+.+..+|..+..+....++.++++++..     +.++.+.|||+. +++.++.++|||.+++||+++
T Consensus       115 ~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-----~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~  189 (236)
T cd04730         115 ARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-----DIPVIAAGGIADGRGIAAALALGADGVQMGTRFL  189 (236)
T ss_pred             HHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-----CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhh
Confidence            444433 4899987665444333333234566677777654     368999999996 999999999999999999998


Q ss_pred             CC
Q 029661          168 GA  169 (190)
Q Consensus       168 ~~  169 (190)
                      +.
T Consensus       190 ~~  191 (236)
T cd04730         190 AT  191 (236)
T ss_pred             cC
Confidence            75

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.35  E-value=1.5e-11  Score=104.65  Aligned_cols=143  Identities=17%  Similarity=0.133  Sum_probs=102.1

Q ss_pred             EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHH-hhcccceEEEEeee
Q 029661           28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC-VLDVVDLVLIMSVN  106 (190)
Q Consensus        28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~-~~~~~d~i~~m~v~  106 (190)
                      .+.++++|   .++.+...|+|+||+....  . .+ ...+.....+..+|.+++  + .+.+.+ .-..+|||.+-.+.
T Consensus       201 ~~~lIIND---~vdlAl~~~aDGVHLgq~d--l-~~-~~aR~llg~~~iIG~S~H--s-~~e~~~A~~~GaDYI~lGPvf  270 (347)
T PRK02615        201 GALFIVND---RVDIALAVDADGVHLGQED--L-PL-AVARQLLGPEKIIGRSTT--N-PEEMAKAIAEGADYIGVGPVF  270 (347)
T ss_pred             CCeEEEeC---hHHHHHHcCCCEEEeChhh--c-CH-HHHHHhcCCCCEEEEecC--C-HHHHHHHHHcCCCEEEECCCc
Confidence            45677887   6788899999999997653  1 11 122222223445566664  4 333444 33469999987777


Q ss_pred             cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhcc
Q 029661          107 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP  185 (190)
Q Consensus       107 pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~~  185 (190)
                      |..+-....+..++.++.+++..     +.++.+-|||+++|+.++.++|++++.++|+|++++||.++++++.+.+.+
T Consensus       271 ~T~tKp~~~~~Gle~l~~~~~~~-----~iPv~AiGGI~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~  344 (347)
T PRK02615        271 PTPTKPGKAPAGLEYLKYAAKEA-----PIPWFAIGGIDKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSR  344 (347)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHhC-----CCCEEEECCCCHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhc
Confidence            65433222344567777776543     468899999999999999999999999999999999999999999887754

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=99.34  E-value=5.1e-11  Score=97.63  Aligned_cols=161  Identities=15%  Similarity=0.195  Sum_probs=111.3

Q ss_pred             CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661           11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI   90 (190)
Q Consensus        11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~   90 (190)
                      -+++.|++||+..++|+..-.+... ..-++.+.++|+|+|   .++.-.....+++..+|..- . .++++.-..++..
T Consensus        52 ~~~~~I~~Ik~~V~iPVIGi~K~~~-~~Ea~~L~eaGvDiI---DaT~r~rP~~~~~~~iK~~~-~-~l~MAD~stleEa  125 (283)
T cd04727          52 ADPKMIKEIMDAVSIPVMAKVRIGH-FVEAQILEALGVDMI---DESEVLTPADEEHHIDKHKF-K-VPFVCGARNLGEA  125 (283)
T ss_pred             CCHHHHHHHHHhCCCCeEEeeehhH-HHHHHHHHHcCCCEE---eccCCCCcHHHHHHHHHHHc-C-CcEEccCCCHHHH
Confidence            3789999999988999999555443 334677899999999   34311122467888887742 2 2344544566544


Q ss_pred             -HHhhcccceEEEEeeecCCCCc-------------------cc-----------chhhHHHHHHHHHHHhhcCCCCeEE
Q 029661           91 -ECVLDVVDLVLIMSVNPGFGGQ-------------------SF-----------IESQVKKISDLRRMCLEKGVNPWIE  139 (190)
Q Consensus        91 -~~~~~~~d~i~~m~v~pG~~gq-------------------~~-----------~~~~~~ki~~~~~~~~~~~~~~~i~  139 (190)
                       ..+-..+|+|-- +.+ |++|.                   .+           .+..++.|+++++..     ++++.
T Consensus       126 l~a~~~Gad~I~T-Tl~-gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-----~iPVV  198 (283)
T cd04727         126 LRRISEGAAMIRT-KGE-AGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG-----RLPVV  198 (283)
T ss_pred             HHHHHCCCCEEEe-cCC-CCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc-----CCCeE
Confidence             444445898842 122 33333                   11           122355566666543     36776


Q ss_pred             --EeCCC-CcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          140 --VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       140 --vdGGI-~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                        ..||| ++++++++.++|||.+++||+||+++||.+.+++|++.+.
T Consensus       199 ~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~  246 (283)
T cd04727         199 NFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT  246 (283)
T ss_pred             EEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence              89999 8999999999999999999999999999999999988765

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=99.32  E-value=9e-12  Score=97.92  Aligned_cols=138  Identities=20%  Similarity=0.195  Sum_probs=91.3

Q ss_pred             EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhh-cccceEEEEeee
Q 029661           28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVN  106 (190)
Q Consensus        28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~  106 (190)
                      .+.+++.+   +++.+.+.|+|+|++....  . .. ...+.....+..+|+.++  +. +.+.+.. ..+||+.+-.+.
T Consensus        57 ~~~l~i~~---~~~la~~~g~~GvHl~~~~--~-~~-~~~r~~~~~~~~ig~s~h--~~-~e~~~a~~~g~dyi~~~~v~  126 (196)
T TIGR00693        57 GVPFIVND---RVDLALALGADGVHLGQDD--L-PA-SEARALLGPDKIIGVSTH--NL-EELAEAEAEGADYIGFGPIF  126 (196)
T ss_pred             CCeEEEEC---HHHHHHHcCCCEEecCccc--C-CH-HHHHHhcCCCCEEEEeCC--CH-HHHHHHhHcCCCEEEECCcc
Confidence            34555655   5677888999999986542  1 12 233333334566666654  33 3333433 358999875555


Q ss_pred             cCCCC-cccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 029661          107 PGFGG-QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI  179 (190)
Q Consensus       107 pG~~g-q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l  179 (190)
                      |.... +...+..++.++++++...    +.++.+.|||++++++++.+.|+|++++||+|++++||.++++.|
T Consensus       127 ~t~~k~~~~~~~g~~~l~~~~~~~~----~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l  196 (196)
T TIGR00693       127 PTPTKKDPAPPAGVELLREIAATSI----DIPIVAIGGITLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL  196 (196)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHhcC----CCCEEEECCcCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
Confidence            43221 1112224566666665432    367999999999999999999999999999999999999988753

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.30  E-value=2.9e-11  Score=96.55  Aligned_cols=143  Identities=20%  Similarity=0.153  Sum_probs=100.1

Q ss_pred             EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhh-cccceEEEEeee
Q 029661           28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVN  106 (190)
Q Consensus        28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~  106 (190)
                      .+.++++|   .++.+.+.|+|+|++..+.  . .+ ...+.+...+..+|++++   ..+.+.+.. ..+||+.+-.+.
T Consensus        63 ~~~liInd---~~~lA~~~~adGVHlg~~d--~-~~-~~~r~~~~~~~~iG~S~H---~~~e~~~A~~~gaDYi~lgpvf  132 (211)
T PRK03512         63 QARLFIND---YWRLAIKHQAYGVHLGQED--L-ET-ADLNAIRAAGLRLGVSTH---DDMEIDVALAARPSYIALGHVF  132 (211)
T ss_pred             CCeEEEeC---HHHHHHHcCCCEEEcChHh--C-CH-HHHHHhcCCCCEEEEeCC---CHHHHHHHhhcCCCEEEECCcc
Confidence            46667777   6778888999999997653  1 12 223333334555666664   333344433 368999998887


Q ss_pred             cCCCCcc-cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          107 PGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       107 pG~~gq~-~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      |..+-+. -.+..++.++++.+..    .+.++.+-|||+++|+.++.++|++++.+-|+|++++||.++++++++.+.
T Consensus       133 ~T~tK~~~~~~~G~~~l~~~~~~~----~~~PV~AiGGI~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~~~~  207 (211)
T PRK03512        133 PTQTKQMPSAPQGLAQLARHVERL----ADYPTVAIGGISLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLELAE  207 (211)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHhc----CCCCEEEECCCCHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHHHHh
Confidence            7644321 1233455565554432    247899999999999999999999999999999999999999999988653

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=99.28  E-value=1.6e-10  Score=92.73  Aligned_cols=154  Identities=21%  Similarity=0.308  Sum_probs=102.6

Q ss_pred             CHHHHHHhccCCCCcEEEEEe--------ecCh-HHHHHHHHHcCCCEEEEcccCC--C-cchHHHHHHHHHH-hCCcEE
Q 029661           12 GPLVVDALRPVTDLPLDVHLM--------IVEP-EQRVPDFIKAGADIVSVHCEQS--S-TIHLHRTLNQIKD-LGAKAG   78 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlm--------v~dp-~~~i~~~~~~Gad~v~vh~e~~--~-~~~~~~~i~~i~~-~g~~~g   78 (190)
                      +++.++.+|+.+++|+..-+.        ..++ .++++.+.++|||.|++-.-..  + .++..++++.+++ .++.+.
T Consensus        44 ~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi  123 (221)
T PRK01130         44 GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLM  123 (221)
T ss_pred             CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEE
Confidence            478899998888889864221        1122 3468899999999777632210  0 1467889999999 666655


Q ss_pred             EEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCc--ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661           79 VVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE  154 (190)
Q Consensus        79 ~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq--~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~  154 (190)
                      .-   .++.++++...+ .+|++.+- . -|..+.  ...+..++.++++++..     +.++.+.|||+ ++++.++.+
T Consensus       124 ~~---v~t~ee~~~a~~~G~d~i~~~-~-~g~t~~~~~~~~~~~~~i~~i~~~~-----~iPvia~GGI~t~~~~~~~l~  193 (221)
T PRK01130        124 AD---CSTLEEGLAAQKLGFDFIGTT-L-SGYTEETKKPEEPDFALLKELLKAV-----GCPVIAEGRINTPEQAKKALE  193 (221)
T ss_pred             Ee---CCCHHHHHHHHHcCCCEEEcC-C-ceeecCCCCCCCcCHHHHHHHHHhC-----CCCEEEECCCCCHHHHHHHHH
Confidence            43   345566655544 37887531 1 122221  12233466677777654     36899999995 899999999


Q ss_pred             cCCCEEEEcccccCCCCHHHH
Q 029661          155 AGANALVAGSAVFGAKDYAEA  175 (190)
Q Consensus       155 aGad~~VvGsaI~~~~dp~~~  175 (190)
                      +|||++++||+|++.+++.+.
T Consensus       194 ~GadgV~iGsai~~~~~~~~~  214 (221)
T PRK01130        194 LGAHAVVVGGAITRPEEITKW  214 (221)
T ss_pred             CCCCEEEEchHhcCCHHHHHH
Confidence            999999999999986555443

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=99.26  E-value=1e-10  Score=96.20  Aligned_cols=163  Identities=14%  Similarity=0.203  Sum_probs=107.8

Q ss_pred             CCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH-H
Q 029661           10 TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-S   88 (190)
Q Consensus        10 ~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~-~   88 (190)
                      .-+|+.|+++++..++|+..-.+..+ ..-.+.+.++|+|+|   .++.-.....+.+..+|.. .++- +++....+ |
T Consensus        60 m~~p~~I~aIk~~V~iPVigk~Righ-~~Ea~~L~~~GvDiI---D~Te~lrpad~~~~~~K~~-f~~~-fmad~~~l~E  133 (293)
T PRK04180         60 MADPKMIEEIMDAVSIPVMAKARIGH-FVEAQILEALGVDYI---DESEVLTPADEEYHIDKWD-FTVP-FVCGARNLGE  133 (293)
T ss_pred             cCCHHHHHHHHHhCCCCeEEeehhhH-HHHHHHHHHcCCCEE---eccCCCCchHHHHHHHHHH-cCCC-EEccCCCHHH
Confidence            45899999999988999998555443 223556899999999   3432112234556655553 2333 34434444 4


Q ss_pred             HHHHhhcccceEEEEeeecCCCC-----------------------cc------cchhhHHHHHHHHHHHhhcCCCCeEE
Q 029661           89 AIECVLDVVDLVLIMSVNPGFGG-----------------------QS------FIESQVKKISDLRRMCLEKGVNPWIE  139 (190)
Q Consensus        89 ~~~~~~~~~d~i~~m~v~pG~~g-----------------------q~------~~~~~~~ki~~~~~~~~~~~~~~~i~  139 (190)
                      .++.+-..+|+|-- +-++|++.                       ..      .....++.|+++++..     ++++.
T Consensus       134 Alrai~~GadmI~T-tge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-----~iPVV  207 (293)
T PRK04180        134 ALRRIAEGAAMIRT-KGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG-----RLPVV  207 (293)
T ss_pred             HHHHHHCCCCeeec-cCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC-----CCCEE
Confidence            55555556888731 11233321                       00      0112344455555432     36776


Q ss_pred             --EeCCC-CcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          140 --VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       140 --vdGGI-~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                        +.||| +++++.++.++|||.+++||+||+++||.+.+++|.+.+.
T Consensus       208 ~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~  255 (293)
T PRK04180        208 NFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATT  255 (293)
T ss_pred             EEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence              89999 8999999999999999999999999999999999988664

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=99.24  E-value=2.5e-10  Score=90.82  Aligned_cols=151  Identities=21%  Similarity=0.233  Sum_probs=106.2

Q ss_pred             CHHHHHHhccC-CC-CcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661           12 GPLVVDALRPV-TD-LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA   89 (190)
Q Consensus        12 G~~~v~~i~~~-~~-~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~   89 (190)
                      +.+.++.|++. ++ ..+-+..-+ +++ -++.+.++||+.++.+...      .++++.+++.|..++.-+  .|+-|.
T Consensus        48 ~~~~i~~l~~~~~~~~~iGaGTV~-~~~-~~~~a~~aGA~fivsp~~~------~~v~~~~~~~~~~~~~G~--~t~~E~  117 (206)
T PRK09140         48 PFDSIAALVKALGDRALIGAGTVL-SPE-QVDRLADAGGRLIVTPNTD------PEVIRRAVALGMVVMPGV--ATPTEA  117 (206)
T ss_pred             HHHHHHHHHHHcCCCcEEeEEecC-CHH-HHHHHHHcCCCEEECCCCC------HHHHHHHHHCCCcEEccc--CCHHHH
Confidence            44567777753 32 455554422 333 5688999999999998762      246778888888877764  455443


Q ss_pred             HHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661           90 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus        90 ~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .+.+-..+|||-+   .|.   ..+.   ++.++++++.++   .++++...||||++|++++.++|+|.+.+||+||++
T Consensus       118 ~~A~~~Gad~vk~---Fpa---~~~G---~~~l~~l~~~~~---~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~~  185 (206)
T PRK09140        118 FAALRAGAQALKL---FPA---SQLG---PAGIKALRAVLP---PDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYRP  185 (206)
T ss_pred             HHHHHcCCCEEEE---CCC---CCCC---HHHHHHHHhhcC---CCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhccc
Confidence            4444446899975   453   1222   455666666553   147899999999999999999999999999999986


Q ss_pred             ----CCHHHHHHHHHHhhc
Q 029661          170 ----KDYAEAIKGIKTSKR  184 (190)
Q Consensus       170 ----~dp~~~~~~l~~~~~  184 (190)
                          +++.+.++++++.++
T Consensus       186 ~~~~~~i~~~a~~~~~~~~  204 (206)
T PRK09140        186 GQSAEEVAERARAFVAAYR  204 (206)
T ss_pred             ccChHHHHHHHHHHHHHHh
Confidence                788888888877654

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=99.22  E-value=3.5e-10  Score=90.61  Aligned_cols=153  Identities=21%  Similarity=0.289  Sum_probs=99.2

Q ss_pred             CHHHHHHhccCCCCcEEE----EEe----ecCh-HHHHHHHHHcCCCEEEEcccCC--C-cchHHHHHHHHHHhCCcEEE
Q 029661           12 GPLVVDALRPVTDLPLDV----HLM----IVEP-EQRVPDFIKAGADIVSVHCEQS--S-TIHLHRTLNQIKDLGAKAGV   79 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~----hlm----v~dp-~~~i~~~~~~Gad~v~vh~e~~--~-~~~~~~~i~~i~~~g~~~g~   79 (190)
                      +++.++.+|+.+++|+..    |+-    ..++ ...++.+.++|||.|.+-....  + .+++.++++.++++| ..-+
T Consensus        48 ~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~i  126 (219)
T cd04729          48 GVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLL  126 (219)
T ss_pred             CHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeE
Confidence            356788888777888864    220    0112 2367889999999888742110  0 136788999999998 3333


Q ss_pred             EEcCCCCHHHHHHhh-cccceEEEEeeecCCCCcc--cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHc
Q 029661           80 VLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA  155 (190)
Q Consensus        80 ~i~p~t~~~~~~~~~-~~~d~i~~m~v~pG~~gq~--~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~a  155 (190)
                      .....|+-+ ..... ..+|++.+-  .-|..++.  .....++.++++++..     +.++.+.|||+ ++++.++.++
T Consensus       127 iv~v~t~~e-a~~a~~~G~d~i~~~--~~g~t~~~~~~~~~~~~~l~~i~~~~-----~ipvia~GGI~~~~~~~~~l~~  198 (219)
T cd04729         127 MADISTLEE-ALNAAKLGFDIIGTT--LSGYTEETAKTEDPDFELLKELRKAL-----GIPVIAEGRINSPEQAAKALEL  198 (219)
T ss_pred             EEECCCHHH-HHHHHHcCCCEEEcc--CccccccccCCCCCCHHHHHHHHHhc-----CCCEEEeCCCCCHHHHHHHHHC
Confidence            444445443 33333 347887421  11332211  1122356667766654     36899999995 8999999999


Q ss_pred             CCCEEEEcccccCCCCHH
Q 029661          156 GANALVAGSAVFGAKDYA  173 (190)
Q Consensus       156 Gad~~VvGsaI~~~~dp~  173 (190)
                      |||++.+||+|++.+||.
T Consensus       199 GadgV~vGsal~~~~~~~  216 (219)
T cd04729         199 GADAVVVGSAITRPEHIT  216 (219)
T ss_pred             CCCEEEEchHHhChHhHh
Confidence            999999999999988775

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=99.17  E-value=2.9e-09  Score=82.77  Aligned_cols=159  Identities=21%  Similarity=0.263  Sum_probs=101.7

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecC--------h-HHHHHHHHHcCCCEEEEcccCC-CcchHHHHHHHHHHhCCcEEEEE
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVE--------P-EQRVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVL   81 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~d--------p-~~~i~~~~~~Gad~v~vh~e~~-~~~~~~~~i~~i~~~g~~~g~~i   81 (190)
                      |++-|+++|+.+++|+.==.|-..        | .+-++.+.++|+|+|-+-+-.- -.+++.++++.+|+.+..+.-.+
T Consensus        20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADi   99 (192)
T PF04131_consen   20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKYQLVMADI   99 (192)
T ss_dssp             SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-
T ss_pred             CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeec
Confidence            788999999988999877555421        2 3567889999999999854210 02568999999999983323334


Q ss_pred             cCCCCHHHHHHhhc-ccceEEEEeeecCCCCccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCC
Q 029661           82 NPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGAN  158 (190)
Q Consensus        82 ~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad  158 (190)
                      +   .++......+ .+|+|.  +.--|+..... ....++.++++++.      +.++-..|+|+ |+.+.++.++||+
T Consensus       100 s---t~ee~~~A~~~G~D~I~--TTLsGYT~~t~~~~pD~~lv~~l~~~------~~pvIaEGri~tpe~a~~al~~GA~  168 (192)
T PF04131_consen  100 S---TLEEAINAAELGFDIIG--TTLSGYTPYTKGDGPDFELVRELVQA------DVPVIAEGRIHTPEQAAKALELGAH  168 (192)
T ss_dssp             S---SHHHHHHHHHTT-SEEE---TTTTSSTTSTTSSHHHHHHHHHHHT------TSEEEEESS--SHHHHHHHHHTT-S
T ss_pred             C---CHHHHHHHHHcCCCEEE--cccccCCCCCCCCCCCHHHHHHHHhC------CCcEeecCCCCCHHHHHHHHhcCCe
Confidence            3   4554444333 489884  33346654332 23346667666652      36788999998 8999999999999


Q ss_pred             EEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          159 ALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       159 ~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      .+||||+|++   |..-.+++.+.++
T Consensus       169 aVVVGsAITr---P~~It~~F~~ai~  191 (192)
T PF04131_consen  169 AVVVGSAITR---PQEITKRFVDAIK  191 (192)
T ss_dssp             EEEE-HHHH----HHHHHHHHHHHCH
T ss_pred             EEEECcccCC---HHHHHHHHHHHHh
Confidence            9999999998   7788888877664

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=99.15  E-value=5.7e-10  Score=99.69  Aligned_cols=144  Identities=21%  Similarity=0.191  Sum_probs=101.4

Q ss_pred             EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEEEeeec
Q 029661           28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP  107 (190)
Q Consensus        28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~p  107 (190)
                      .+.|+++|   +++.+.+.|+|+||+..+.  . ... ..+.....+..+|+.++  +..+..+..-..+|||.+-.+.|
T Consensus       351 ~~~liind---~~~lA~~~~adGvHl~~~d--~-~~~-~~r~~~~~~~~iG~S~h--~~~e~~~a~~~gadyi~~gpif~  421 (502)
T PLN02898        351 GVPLLIND---RVDVALACDADGVHLGQSD--M-PVR-LARSLLGPGKIIGVSCK--TPEQAEQAWKDGADYIGCGGVFP  421 (502)
T ss_pred             CCEEEEcC---hHHHHHhcCCCEEEeChHh--c-CHH-HHHHhcCCCCEEEEeCC--CHHHHHHHhhcCCCEEEECCeec
Confidence            45567777   6788888999999997653  1 121 22222223456666654  34332233334699999877777


Q ss_pred             CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCC---EEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          108 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN---ALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       108 G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad---~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      ..+-....+..++.++++.+..     +.++.+.|||+++|+.++.++|++   ++.++|+|++++||.++++++++.+.
T Consensus       422 t~tk~~~~~~g~~~~~~~~~~~-----~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~  496 (502)
T PLN02898        422 TNTKANNKTIGLDGLREVCEAS-----KLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILT  496 (502)
T ss_pred             CCCCCCCCCCCHHHHHHHHHcC-----CCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHH
Confidence            6443223344567777776543     478999999999999999999999   99999999999999999999988765


Q ss_pred             c
Q 029661          185 P  185 (190)
Q Consensus       185 ~  185 (190)
                      +
T Consensus       497 ~  497 (502)
T PLN02898        497 E  497 (502)
T ss_pred             H
Confidence            3

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=99.06  E-value=7.7e-09  Score=84.15  Aligned_cols=163  Identities=12%  Similarity=0.099  Sum_probs=116.6

Q ss_pred             CccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE
Q 029661            2 DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL   81 (190)
Q Consensus         2 Dg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i   81 (190)
                      |++|   |.-..+.++.+|+.+++|+..+=-+-||....+ +..+|||.|.++....+.+.+.++++.+++.|+.+-+-+
T Consensus        83 e~~~---F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~e-a~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEV  158 (247)
T PRK13957         83 DQSY---FGGSLEDLKSVSSELKIPVLRKDFILDEIQIRE-ARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEV  158 (247)
T ss_pred             CCCc---CCCCHHHHHHHHHhcCCCEEeccccCCHHHHHH-HHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEE
Confidence            4555   667888999999888899988766778876655 455999999999775334468999999999999999988


Q ss_pred             cCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661           82 NPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        82 ~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      +....+++...  ..++.|.+=..+.    ..| .-.++.-.++..++++   +..+..-+||+ ++++..+.++ +|.+
T Consensus       159 h~~~El~~a~~--~ga~iiGINnRdL----~t~-~vd~~~~~~L~~~ip~---~~~~IsESGI~t~~d~~~l~~~-~dav  227 (247)
T PRK13957        159 HTEDEAKLALD--CGAEIIGINTRDL----DTF-QIHQNLVEEVAAFLPP---NIVKVGESGIESRSDLDKFRKL-VDAA  227 (247)
T ss_pred             CCHHHHHHHHh--CCCCEEEEeCCCC----ccc-eECHHHHHHHHhhCCC---CcEEEEcCCCCCHHHHHHHHHh-CCEE
Confidence            75444433322  2466654322221    112 1124444566677663   23444679998 7999998886 9999


Q ss_pred             EEcccccCCCCHHHHHHHH
Q 029661          161 VAGSAVFGAKDYAEAIKGI  179 (190)
Q Consensus       161 VvGsaI~~~~dp~~~~~~l  179 (190)
                      .+|+++.+++||.+++++|
T Consensus       228 LvG~~lm~~~d~~~~~~~l  246 (247)
T PRK13957        228 LIGTYFMEKKDIRKAWLSL  246 (247)
T ss_pred             EECHHHhCCCCHHHHHHHh
Confidence            9999999999999988765

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=99.05  E-value=4e-09  Score=84.36  Aligned_cols=150  Identities=17%  Similarity=0.106  Sum_probs=104.1

Q ss_pred             CHHHHHHhccC-C---CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661           12 GPLVVDALRPV-T---DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL   87 (190)
Q Consensus        12 G~~~v~~i~~~-~---~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~   87 (190)
                      ..+.++.|++. .   +..+-+-. |.+++ -++.+.++||+.+.-+.-      -.++++.++++|+....-..  ||-
T Consensus        51 a~~~i~~l~~~~~~~p~~~vGaGT-V~~~~-~~~~a~~aGA~FivsP~~------~~~v~~~~~~~~i~~iPG~~--T~~  120 (213)
T PRK06552         51 ASEVIKELVELYKDDPEVLIGAGT-VLDAV-TARLAILAGAQFIVSPSF------NRETAKICNLYQIPYLPGCM--TVT  120 (213)
T ss_pred             HHHHHHHHHHHcCCCCCeEEeeee-CCCHH-HHHHHHHcCCCEEECCCC------CHHHHHHHHHcCCCEECCcC--CHH
Confidence            45678888753 2   34565654 34455 457899999999986654      23588999998887554332  444


Q ss_pred             HHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccccc
Q 029661           88 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus        88 ~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~  167 (190)
                      |...-+...+|+|-+   .|..   .+.   ++.++.++...+    +.++...||||++|+.++.++|++.+.+||+++
T Consensus       121 E~~~A~~~Gad~vkl---FPa~---~~G---~~~ik~l~~~~p----~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~  187 (213)
T PRK06552        121 EIVTALEAGSEIVKL---FPGS---TLG---PSFIKAIKGPLP----QVNVMVTGGVNLDNVKDWFAAGADAVGIGGELN  187 (213)
T ss_pred             HHHHHHHcCCCEEEE---CCcc---cCC---HHHHHHHhhhCC----CCEEEEECCCCHHHHHHHHHCCCcEEEEchHHh
Confidence            444444456899875   5531   122   444666666554    378999999999999999999999999999999


Q ss_pred             CC------CCHHHHHHHHHHhhc
Q 029661          168 GA------KDYAEAIKGIKTSKR  184 (190)
Q Consensus       168 ~~------~dp~~~~~~l~~~~~  184 (190)
                      +.      +++.+.++++.+.++
T Consensus       188 ~~~~~~~~~~i~~~a~~~~~~~~  210 (213)
T PRK06552        188 KLASQGDFDLITEKAKKYMSSLR  210 (213)
T ss_pred             CccccCCHHHHHHHHHHHHHHHH
Confidence            86      456677777766544

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=99.05  E-value=1.5e-08  Score=80.24  Aligned_cols=148  Identities=20%  Similarity=0.219  Sum_probs=97.0

Q ss_pred             CHHHHHHhccCC-CCcEEEEEeecC-hHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHH-hCCcEE--EEEcCCCC
Q 029661           12 GPLVVDALRPVT-DLPLDVHLMIVE-PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-LGAKAG--VVLNPATS   86 (190)
Q Consensus        12 G~~~v~~i~~~~-~~~i~~hlmv~d-p~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~-~g~~~g--~~i~p~t~   86 (190)
                      .++..++|++.. ...-.+-+.+++ +....+.+.+.|+|+|++|...    ++ ..++.+|+ .|.++.  +.++..+.
T Consensus        36 ~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e----~~-~~~~~l~~~~~~~~i~~i~~~~~~~  110 (203)
T cd00405          36 SPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE----SP-EYCAQLRARLGLPVIKAIRVKDEED  110 (203)
T ss_pred             CHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC----CH-HHHHHHHhhcCCcEEEEEecCChhh
Confidence            467778888753 323345556654 4566677889999999999762    22 34556665 366665  33443334


Q ss_pred             HHHHHHhhcccceEEEEeeecC---CCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC-CCEEEE
Q 029661           87 LSAIECVLDVVDLVLIMSVNPG---FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANALVA  162 (190)
Q Consensus        87 ~~~~~~~~~~~d~i~~m~v~pG---~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG-ad~~Vv  162 (190)
                      .+..+.+...+||+++=+..++   ..|+.+.-+.   +++++       .+.++.+.||||++|+.++++.| ++++.+
T Consensus       111 ~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~---l~~~~-------~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv  180 (203)
T cd00405         111 LEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSL---LRGLA-------SRKPVILAGGLTPDNVAEAIRLVRPYGVDV  180 (203)
T ss_pred             HHHhhhccccCCEEEEcCCCCCCCCCCcceEChHH---hhccc-------cCCCEEEECCCChHHHHHHHHhcCCCEEEc
Confidence            4333444456899987554332   2355654443   33333       13678899999999999999999 999999


Q ss_pred             cccccCC---CCHHH
Q 029661          163 GSAVFGA---KDYAE  174 (190)
Q Consensus       163 GsaI~~~---~dp~~  174 (190)
                      +|++..+   .|+..
T Consensus       181 ~S~ie~~pg~kd~~k  195 (203)
T cd00405         181 SSGVETSPGIKDPEK  195 (203)
T ss_pred             CCcccCCCCCcCHHH
Confidence            9999977   45543

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=99.04  E-value=2.2e-09  Score=83.62  Aligned_cols=124  Identities=22%  Similarity=0.188  Sum_probs=85.2

Q ss_pred             EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhh-cccceEEEEeee
Q 029661           28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVN  106 (190)
Q Consensus        28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~  106 (190)
                      .+.++++|   ..+.+.+.|+|+|++....  . ... ..+.....+..+|.+++   +.+.+++.. ..+||+.+-.+.
T Consensus        56 ~~~liin~---~~~la~~~~~dGvHl~~~~--~-~~~-~~r~~~~~~~~ig~S~h---~~~e~~~a~~~g~dYv~~gpvf  125 (180)
T PF02581_consen   56 GVPLIIND---RVDLALELGADGVHLGQSD--L-PPA-EARKLLGPDKIIGASCH---SLEEAREAEELGADYVFLGPVF  125 (180)
T ss_dssp             TGCEEEES----HHHHHHCT-SEEEEBTTS--S-SHH-HHHHHHTTTSEEEEEES---SHHHHHHHHHCTTSEEEEETSS
T ss_pred             eEEEEecC---CHHHHHhcCCCEEEecccc--c-chH-HhhhhcccceEEEeecC---cHHHHHHhhhcCCCEEEECCcc
Confidence            44567777   6778888999999998763  2 232 23333445778888876   333344433 458999998888


Q ss_pred             cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccc
Q 029661          107 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV  166 (190)
Q Consensus       107 pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI  166 (190)
                      |..+-....+..++.++++++..+     .++.+-|||+++|+.++.++|++++.+.|+|
T Consensus       126 ~T~sk~~~~~~g~~~l~~~~~~~~-----~pv~AlGGI~~~~i~~l~~~Ga~gvAvi~aI  180 (180)
T PF02581_consen  126 PTSSKPGAPPLGLDGLREIARASP-----IPVYALGGITPENIPELREAGADGVAVISAI  180 (180)
T ss_dssp             --SSSSS-TTCHHHHHHHHHHHTS-----SCEEEESS--TTTHHHHHHTT-SEEEESHHH
T ss_pred             CCCCCccccccCHHHHHHHHHhCC-----CCEEEEcCCCHHHHHHHHHcCCCEEEEEeeC
Confidence            776644445666888888877653     6899999999999999999999999999886

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=99.04  E-value=2.1e-09  Score=100.28  Aligned_cols=147  Identities=19%  Similarity=0.223  Sum_probs=100.7

Q ss_pred             EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-----ccceEEE
Q 029661           28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-----VVDLVLI  102 (190)
Q Consensus        28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-----~~d~i~~  102 (190)
                      .+.|.++|   .++.+.++|+| |++..+.  . .+ ...+.....+..+|++++....++.+.....     .+||+.+
T Consensus        63 ~~~liind---~~~la~~~~~d-VHlg~~d--l-~~-~~~r~~~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~  134 (755)
T PRK09517         63 GVALVVND---RLDVAVELGLH-VHIGQGD--T-PY-TQARRLLPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGI  134 (755)
T ss_pred             CCeEEEeC---hHHHHHHcCCC-eecCCCc--C-CH-HHHHHhcCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEE
Confidence            46677777   67788899999 5555442  1 12 2333332335567776652222222222112     2899999


Q ss_pred             EeeecCCCCccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661          103 MSVNPGFGGQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       103 m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~  181 (190)
                      -.+.|..+-..- .+-.++.++++++...+  .++++.+-|||+++|+.++.++||+++.+.|+|++++||.++++++++
T Consensus       135 Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~--~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~  212 (755)
T PRK09517        135 GPVASTATKPDAPPALGVDGIAEIAAVAQD--HGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRT  212 (755)
T ss_pred             CCccccCCCCCCCCCCCHHHHHHHHHhcCc--CCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHH
Confidence            888776543222 23456778887777642  237899999999999999999999999999999999999999999987


Q ss_pred             hhc
Q 029661          182 SKR  184 (190)
Q Consensus       182 ~~~  184 (190)
                      .++
T Consensus       213 ~~~  215 (755)
T PRK09517        213 AFQ  215 (755)
T ss_pred             HHH
Confidence            665

>cd04732 HisA HisA

Probab=99.02  E-value=1.8e-08  Score=81.19  Aligned_cols=150  Identities=13%  Similarity=0.185  Sum_probs=105.2

Q ss_pred             CCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEc------
Q 029661           10 TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLN------   82 (190)
Q Consensus        10 ~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~------   82 (190)
                      ....+.++++++..++|+.+.=-+.+++. ++.+.+.|||.|.+..+.  ..++..+-+.+++.|. ++.+++.      
T Consensus        59 ~~~~~~i~~i~~~~~~pv~~~GgI~~~e~-~~~~~~~Gad~vvigs~~--l~dp~~~~~i~~~~g~~~i~~sid~~~~~~  135 (234)
T cd04732          59 PVNLELIEEIVKAVGIPVQVGGGIRSLED-IERLLDLGVSRVIIGTAA--VKNPELVKELLKEYGGERIVVGLDAKDGKV  135 (234)
T ss_pred             CCCHHHHHHHHHhcCCCEEEeCCcCCHHH-HHHHHHcCCCEEEECchH--HhChHHHHHHHHHcCCceEEEEEEeeCCEE
Confidence            44577899998877778777555666654 466778999999987664  4556666666677776 5555543      


Q ss_pred             ---------CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHH
Q 029661           83 ---------PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYK  151 (190)
Q Consensus        83 ---------p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~  151 (190)
                               +.++.+.++.+.+. ++.++++.+......   ....++.++++++..     +.++.+.|||+ .+++..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~---~g~~~~~i~~i~~~~-----~ipvi~~GGi~~~~di~~  207 (234)
T cd04732         136 ATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTL---SGPNFELYKELAAAT-----GIPVIASGGVSSLDDIKA  207 (234)
T ss_pred             EECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCcc---CCCCHHHHHHHHHhc-----CCCEEEecCCCCHHHHHH
Confidence                     23445556666554 899999887642221   112355666666543     46899999999 688999


Q ss_pred             HHHcCCCEEEEcccccCCC
Q 029661          152 VIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       152 ~~~aGad~~VvGsaI~~~~  170 (190)
                      +.+.|+|.+++||+++..+
T Consensus       208 ~~~~Ga~gv~vg~~~~~~~  226 (234)
T cd04732         208 LKELGVAGVIVGKALYEGK  226 (234)
T ss_pred             HHHCCCCEEEEeHHHHcCC
Confidence            9999999999999998765

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=99.01  E-value=8.4e-09  Score=80.93  Aligned_cols=134  Identities=16%  Similarity=0.119  Sum_probs=89.9

Q ss_pred             HHHHHHhccC-CCCcEEE-EEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661           13 PLVVDALRPV-TDLPLDV-HLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI   90 (190)
Q Consensus        13 ~~~v~~i~~~-~~~~i~~-hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~   90 (190)
                      .+.++.+++. +....-. .+++.   +.++.+.++|||+++.+...      .+.++..+.++....  +-..|+-+..
T Consensus        51 ~e~~~~~~~~~~~~~~g~gtvl~~---d~~~~A~~~gAdgv~~p~~~------~~~~~~~~~~~~~~i--~G~~t~~e~~  119 (187)
T PRK07455         51 AELISQLREKLPECIIGTGTILTL---EDLEEAIAAGAQFCFTPHVD------PELIEAAVAQDIPII--PGALTPTEIV  119 (187)
T ss_pred             HHHHHHHHHhCCCcEEeEEEEEcH---HHHHHHHHcCCCEEECCCCC------HHHHHHHHHcCCCEE--cCcCCHHHHH
Confidence            4556666654 3222322 33333   47889999999999987652      234666667776532  2245565544


Q ss_pred             HHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661           91 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus        91 ~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      +.....+|||-+   .|...     ...++.++.++...+    +.++.+.|||+++|++++.++||+.+.+||+|++.
T Consensus       120 ~A~~~Gadyv~~---Fpt~~-----~~G~~~l~~~~~~~~----~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~~  186 (187)
T PRK07455        120 TAWQAGASCVKV---FPVQA-----VGGADYIKSLQGPLG----HIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFPK  186 (187)
T ss_pred             HHHHCCCCEEEE---CcCCc-----ccCHHHHHHHHhhCC----CCcEEEeCCCCHHHHHHHHHCCCeEEEEehhcccC
Confidence            444456899976   66421     112455666666543    37899999999999999999999999999999975

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=99.01  E-value=5.3e-09  Score=82.13  Aligned_cols=134  Identities=19%  Similarity=0.156  Sum_probs=90.7

Q ss_pred             CHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661           12 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI   90 (190)
Q Consensus        12 G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~   90 (190)
                      ..+.++.+++. ++..+-+...+. +. .++.+.++|+|.++....      ..++++.++++|..+.+-+.  |+-+..
T Consensus        42 ~~~~i~~l~~~~~~~~iGag~v~~-~~-~~~~a~~~Ga~~i~~p~~------~~~~~~~~~~~~~~~i~gv~--t~~e~~  111 (190)
T cd00452          42 ALEAIRALRKEFPEALIGAGTVLT-PE-QADAAIAAGAQFIVSPGL------DPEVVKAANRAGIPLLPGVA--TPTEIM  111 (190)
T ss_pred             HHHHHHHHHHHCCCCEEEEEeCCC-HH-HHHHHHHcCCCEEEcCCC------CHHHHHHHHHcCCcEECCcC--CHHHHH
Confidence            34567778775 456666655442 22 578889999999986544      23578888888877544333  444433


Q ss_pred             HHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccC
Q 029661           91 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus        91 ~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      +..-..+|+|.+   .|.      .+...+-++.+++..+    ++++.+.||||++|+.++.++|+|.+++||+||+
T Consensus       112 ~A~~~Gad~i~~---~p~------~~~g~~~~~~l~~~~~----~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~~  176 (190)
T cd00452         112 QALELGADIVKL---FPA------EAVGPAYIKALKGPFP----QVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLPK  176 (190)
T ss_pred             HHHHCCCCEEEE---cCC------cccCHHHHHHHHhhCC----CCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcch
Confidence            333345899975   442      1113344555554432    3689999999999999999999999999999994

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=99.00  E-value=1e-08  Score=82.93  Aligned_cols=128  Identities=22%  Similarity=0.311  Sum_probs=86.5

Q ss_pred             HHHHHHcCCCEEEEcccCCCc------chHHHHHHHHHHhCCcEEEEEcC--------CCC--HHH-HHHhhc-ccceEE
Q 029661           40 VPDFIKAGADIVSVHCEQSST------IHLHRTLNQIKDLGAKAGVVLNP--------ATS--LSA-IECVLD-VVDLVL  101 (190)
Q Consensus        40 i~~~~~~Gad~v~vh~e~~~~------~~~~~~i~~i~~~g~~~g~~i~p--------~t~--~~~-~~~~~~-~~d~i~  101 (190)
                      ++.+.+.||+.+.+..-....      +.+.++.+.++++|+++.+-...        .++  ++. .+...+ .+|||-
T Consensus        82 v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik  161 (235)
T cd00958          82 VEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVK  161 (235)
T ss_pred             HHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEE
Confidence            778899999998665432111      24667777778899998775443        112  222 111222 479886


Q ss_pred             EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-------ccHHHHHHcCCCEEEEcccccCCCCHHH
Q 029661          102 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-------KNAYKVIEAGANALVAGSAVFGAKDYAE  174 (190)
Q Consensus       102 ~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-------e~~~~~~~aGad~~VvGsaI~~~~dp~~  174 (190)
                      +   .+  .+      .++.++++.+..     ..++.+.||++.       ++++++.++||+++.+||+||+++||.+
T Consensus       162 ~---~~--~~------~~~~~~~i~~~~-----~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~  225 (235)
T cd00958         162 T---KY--TG------DAESFKEVVEGC-----PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVA  225 (235)
T ss_pred             e---cC--CC------CHHHHHHHHhcC-----CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHH
Confidence            5   11  11      244455554432     356778899865       5699999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 029661          175 AIKGIKTSK  183 (190)
Q Consensus       175 ~~~~l~~~~  183 (190)
                      .++++++.+
T Consensus       226 ~~~~~~~~~  234 (235)
T cd00958         226 MLRAISAVV  234 (235)
T ss_pred             HHHHHHHHh
Confidence            999998753

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=98.99  E-value=7.5e-09  Score=84.70  Aligned_cols=156  Identities=24%  Similarity=0.335  Sum_probs=107.4

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE   91 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~   91 (190)
                      +.+.++.+|+.+++|+...=.+-||... ..+..+|||.|.+.....+.+.+.++++.+++.|+.+-+-++...   .++
T Consensus        97 s~~dL~~v~~~~~~PvL~KDFIid~~QI-~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~---El~  172 (254)
T PF00218_consen   97 SLEDLRAVRKAVDLPVLRKDFIIDPYQI-YEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEE---ELE  172 (254)
T ss_dssp             HHHHHHHHHHHSSS-EEEES---SHHHH-HHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHH---HHH
T ss_pred             CHHHHHHHHHHhCCCcccccCCCCHHHH-HHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHH---HHH
Confidence            4567778887788898885445666644 467889999999987664445678999999999999999887433   344


Q ss_pred             Hhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661           92 CVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus        92 ~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      ..+. .++.|.+=..+..    .|. ..+++-.++...+++   +..+..-+||+ ++++..+.++|+|.+.+|+++.++
T Consensus       173 ~al~~~a~iiGINnRdL~----tf~-vd~~~~~~l~~~ip~---~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~  244 (254)
T PF00218_consen  173 RALEAGADIIGINNRDLK----TFE-VDLNRTEELAPLIPK---DVIVISESGIKTPEDARRLARAGADAVLVGEALMRS  244 (254)
T ss_dssp             HHHHTT-SEEEEESBCTT----TCC-BHTHHHHHHHCHSHT---TSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred             HHHHcCCCEEEEeCcccc----Ccc-cChHHHHHHHhhCcc---ceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence            4333 4676654333322    221 224455566666664   35677899999 799999999999999999999999


Q ss_pred             CCHHHHHHHH
Q 029661          170 KDYAEAIKGI  179 (190)
Q Consensus       170 ~dp~~~~~~l  179 (190)
                      +||.+++++|
T Consensus       245 ~d~~~~~~~L  254 (254)
T PF00218_consen  245 PDPGEALREL  254 (254)
T ss_dssp             SSHHHHHHHH
T ss_pred             CCHHHHHhcC
Confidence            9999998875

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=98.96  E-value=2.8e-08  Score=83.63  Aligned_cols=138  Identities=17%  Similarity=0.287  Sum_probs=101.4

Q ss_pred             HHHHhccCCCCcEEEEEeecCh--HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHH
Q 029661           15 VVDALRPVTDLPLDVHLMIVEP--EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC   92 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp--~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~   92 (190)
                      .|+++|+.++.|+-+.++...|  .+.++.+.+.|++.|.++.-.     +.+.++.+|+.|+++...+   ++.+..+.
T Consensus        53 ~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~-----p~~~i~~lk~~g~~v~~~v---~s~~~a~~  124 (307)
T TIGR03151        53 EIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGN-----PGKYIPRLKENGVKVIPVV---ASVALAKR  124 (307)
T ss_pred             HHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCC-----cHHHHHHHHHcCCEEEEEc---CCHHHHHH
Confidence            3566777788999999988655  356777899999999997542     4568999999998765433   34555555


Q ss_pred             hhc-ccceEEEEeeecCCC-CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661           93 VLD-VVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus        93 ~~~-~~d~i~~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      ..+ .+|.|.+.+.+.|.. |+   ...+..+.++++..     +++|.+.|||+ .+.+..+...|||.+.+||.+..
T Consensus       125 a~~~GaD~Ivv~g~eagGh~g~---~~~~~ll~~v~~~~-----~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~  195 (307)
T TIGR03151       125 MEKAGADAVIAEGMESGGHIGE---LTTMALVPQVVDAV-----SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC  195 (307)
T ss_pred             HHHcCCCEEEEECcccCCCCCC---CcHHHHHHHHHHHh-----CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence            444 499999887776532 32   23466667666543     47899999998 57799999999999999997653

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=98.95  E-value=3.8e-08  Score=79.21  Aligned_cols=146  Identities=16%  Similarity=0.215  Sum_probs=102.8

Q ss_pred             HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEc---------
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLN---------   82 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~---------   82 (190)
                      .+.++++++.++.|+.+.==+.+++ -++.+.++|||.+++..+.  ..++..+.+.+++.| -++.+++.         
T Consensus        61 ~~~i~~i~~~~~~pi~~ggGI~~~e-d~~~~~~~Ga~~vvlgs~~--l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~  137 (230)
T TIGR00007        61 LPVIKKIVRETGVPVQVGGGIRSLE-DVEKLLDLGVDRVIIGTAA--VENPDLVKELLKEYGPERIVVSLDARGGEVAVK  137 (230)
T ss_pred             HHHHHHHHHhcCCCEEEeCCcCCHH-HHHHHHHcCCCEEEEChHH--hhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEc
Confidence            5788999887777777755555544 3567888999999987664  456777788888887 34554433         


Q ss_pred             ------CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661           83 ------PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE  154 (190)
Q Consensus        83 ------p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~  154 (190)
                            +.++.+.++.+.+. ++.++++.+...  |.... ..++.++++++..     +.++.+.|||+ .+++..+.+
T Consensus       138 g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~--g~~~g-~~~~~i~~i~~~~-----~ipvia~GGi~~~~di~~~~~  209 (230)
T TIGR00007       138 GWLEKSEVSLEELAKRLEELGLEGIIYTDISRD--GTLSG-PNFELTKELVKAV-----NVPVIASGGVSSIDDLIALKK  209 (230)
T ss_pred             CCcccCCCCHHHHHHHHHhCCCCEEEEEeecCC--CCcCC-CCHHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHH
Confidence                  22345555656554 788888777642  22222 2366666666542     46899999999 699999999


Q ss_pred             cCCCEEEEcccccCC
Q 029661          155 AGANALVAGSAVFGA  169 (190)
Q Consensus       155 aGad~~VvGsaI~~~  169 (190)
                      .|||.+++||+++..
T Consensus       210 ~Gadgv~ig~a~~~~  224 (230)
T TIGR00007       210 LGVYGVIVGKALYEG  224 (230)
T ss_pred             CCCCEEEEeHHHHcC
Confidence            999999999998865

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=98.95  E-value=8.8e-09  Score=83.12  Aligned_cols=135  Identities=20%  Similarity=0.197  Sum_probs=94.6

Q ss_pred             HHHHHHc-CCCEEEEcccCCC---cchHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCC
Q 029661           40 VPDFIKA-GADIVSVHCEQSS---TIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGG  111 (190)
Q Consensus        40 i~~~~~~-Gad~v~vh~e~~~---~~~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~g  111 (190)
                      .+.+.++ |-|||=+-....+   ..++.++++++++.   |+.+...+++  ++...+.+.+ .++.|.-++...| +|
T Consensus        82 a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~d--d~~~ar~l~~~G~~~vmPlg~pIG-sg  158 (248)
T cd04728          82 ARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTD--DPVLAKRLEDAGCAAVMPLGSPIG-SG  158 (248)
T ss_pred             HHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHcCCCEeCCCCcCCC-CC
Confidence            4445555 5688876432100   34688999999998   8887766654  3333445443 4787744445556 34


Q ss_pred             cccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       112 q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      +..  ...+.|+.+++.     .+.++-++|||+ ++++.++.+.|||.+++||+|++++||...++.++..++
T Consensus       159 ~Gi--~~~~~I~~I~e~-----~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~  225 (248)
T cd04728         159 QGL--LNPYNLRIIIER-----ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVE  225 (248)
T ss_pred             CCC--CCHHHHHHHHHh-----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence            432  124455555543     246899999999 899999999999999999999999999999999988664

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.95  E-value=3e-08  Score=79.19  Aligned_cols=138  Identities=12%  Similarity=0.041  Sum_probs=97.2

Q ss_pred             CCCCHHHHHHhcc-CCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661            9 ITIGPLVVDALRP-VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL   87 (190)
Q Consensus         9 ~~~G~~~v~~i~~-~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~   87 (190)
                      ...+.+.|+.+|+ +++..+-+...+++  +-.+.+.++||+.++.+..+     . ++++.++++|+....-  ..||-
T Consensus        50 ~~~~~~~I~~l~~~~p~~~IGAGTVl~~--~~a~~a~~aGA~FivsP~~~-----~-~vi~~a~~~~i~~iPG--~~Tpt  119 (212)
T PRK05718         50 TPAALEAIRLIAKEVPEALIGAGTVLNP--EQLAQAIEAGAQFIVSPGLT-----P-PLLKAAQEGPIPLIPG--VSTPS  119 (212)
T ss_pred             CccHHHHHHHHHHHCCCCEEEEeeccCH--HHHHHHHHcCCCEEECCCCC-----H-HHHHHHHHcCCCEeCC--CCCHH
Confidence            3457888999986 57888999987765  34788999999999998763     2 6888899877664322  23555


Q ss_pred             HHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccc
Q 029661           88 SAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV  166 (190)
Q Consensus        88 ~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI  166 (190)
                      | +.... -.+|.|-+   .|+.   .+.  -.+-++.++..++    +.++.+.|||+++|++++.++|+-.++.||.+
T Consensus       120 E-i~~a~~~Ga~~vKl---FPa~---~~g--g~~~lk~l~~p~p----~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~L  186 (212)
T PRK05718        120 E-LMLGMELGLRTFKF---FPAE---ASG--GVKMLKALAGPFP----DVRFCPTGGISPANYRDYLALPNVLCIGGSWM  186 (212)
T ss_pred             H-HHHHHHCCCCEEEE---ccch---hcc--CHHHHHHHhccCC----CCeEEEeCCCCHHHHHHHHhCCCEEEEEChHh
Confidence            5 33333 34777754   5532   111  2334566666654    47899999999999999999996666777888


Q ss_pred             cCC
Q 029661          167 FGA  169 (190)
Q Consensus       167 ~~~  169 (190)
                      |+.
T Consensus       187 ~~~  189 (212)
T PRK05718        187 VPK  189 (212)
T ss_pred             CCc
Confidence            864

>PRK00208 thiG thiazole synthase; Reviewed

Probab=98.94  E-value=9.6e-09  Score=82.99  Aligned_cols=135  Identities=17%  Similarity=0.168  Sum_probs=94.1

Q ss_pred             HHHHHHc-CCCEEEEcccC---CCcchHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCC
Q 029661           40 VPDFIKA-GADIVSVHCEQ---SSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGG  111 (190)
Q Consensus        40 i~~~~~~-Gad~v~vh~e~---~~~~~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~g  111 (190)
                      .+.+.++ |-+||=+-.-.   ....++.++++++++.   |+.+...+++  ++...+.+.+ .++.|.-++...| +|
T Consensus        82 a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~--d~~~ak~l~~~G~~~vmPlg~pIG-sg  158 (250)
T PRK00208         82 ARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTD--DPVLAKRLEEAGCAAVMPLGAPIG-SG  158 (250)
T ss_pred             HHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHcCCCEeCCCCcCCC-CC
Confidence            3444554 56887763221   1135688999999998   8887756654  3334455444 4788744445557 34


Q ss_pred             cccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       112 q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      +...  ..+.++.+++.     .+.++.++|||+ ++++.++.+.|||.+++||+|++++||...+++++..++
T Consensus       159 ~gi~--~~~~i~~i~e~-----~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~  225 (250)
T PRK00208        159 LGLL--NPYNLRIIIEQ-----ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVE  225 (250)
T ss_pred             CCCC--CHHHHHHHHHh-----cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence            4331  13445555554     246899999999 899999999999999999999999999999999988664

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.90  E-value=8.6e-08  Score=77.70  Aligned_cols=148  Identities=18%  Similarity=0.195  Sum_probs=96.9

Q ss_pred             HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcC--------
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNP--------   83 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p--------   83 (190)
                      .+.+++|.+.++.|+.++==+.+++ -++.+.++|||.|++-.+.  ..+++.+.+..+..|. ++.+.+..        
T Consensus        65 ~~~i~~i~~~~~~~l~v~GGi~~~~-~~~~~~~~Ga~~v~iGs~~--~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~  141 (241)
T PRK13585         65 AEAIEKIIEAVGVPVQLGGGIRSAE-DAASLLDLGVDRVILGTAA--VENPEIVRELSEEFGSERVMVSLDAKDGEVVIK  141 (241)
T ss_pred             HHHHHHHHHHcCCcEEEcCCcCCHH-HHHHHHHcCCCEEEEChHH--hhChHHHHHHHHHhCCCcEEEEEEeeCCEEEEC
Confidence            4567777666666666643344443 3566778999999998764  4455555555566553 33333331        


Q ss_pred             ------C-CCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661           84 ------A-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE  154 (190)
Q Consensus        84 ------~-t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~  154 (190)
                            . ++.+..+.+.+ .++.+++..+.+....   .+..++.++++++..     +.++.+.|||+ ++++..+.+
T Consensus       142 g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~---~g~~~~~i~~i~~~~-----~iPvia~GGI~~~~di~~~~~  213 (241)
T PRK13585        142 GWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLL---EGVNTEPVKELVDSV-----DIPVIASGGVTTLDDLRALKE  213 (241)
T ss_pred             CCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCc---CCCCHHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHH
Confidence                  1 34555555543 3788988777643111   122355566666543     47899999999 899999999


Q ss_pred             cCCCEEEEcccccCCCC
Q 029661          155 AGANALVAGSAVFGAKD  171 (190)
Q Consensus       155 aGad~~VvGsaI~~~~d  171 (190)
                      .||+.+++||++++.+.
T Consensus       214 ~Ga~gv~vgsa~~~~~~  230 (241)
T PRK13585        214 AGAAGVVVGSALYKGKF  230 (241)
T ss_pred             cCCCEEEEEHHHhcCCc
Confidence            99999999999998653

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=98.88  E-value=1.4e-08  Score=82.66  Aligned_cols=158  Identities=21%  Similarity=0.298  Sum_probs=114.6

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE   91 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~   91 (190)
                      .++.++.+|...++|+.++=-+-||.. +..+...|||.|.+.....+.+.+.++.+.+++.|+.+-+-++....+++..
T Consensus        95 s~e~L~~v~~~v~~PvL~KDFiiD~yQ-I~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl  173 (254)
T COG0134          95 SFEDLRAVRAAVDLPVLRKDFIIDPYQ-IYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERAL  173 (254)
T ss_pred             CHHHHHHHHHhcCCCeeeccCCCCHHH-HHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHH
Confidence            567888998888999988766677764 5567889999999987654345689999999999999999888544444333


Q ss_pred             HhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCC
Q 029661           92 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus        92 ~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      +  -.++.|-   ++-- +=..| ...++.-.++..++++   +..+..-.||+ ++++..+.+.|||.|-+|+++.+++
T Consensus       174 ~--~ga~iIG---INnR-dL~tf-~vdl~~t~~la~~~p~---~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~  243 (254)
T COG0134         174 K--LGAKIIG---INNR-DLTTL-EVDLETTEKLAPLIPK---DVILISESGISTPEDVRRLAKAGADAFLVGEALMRAD  243 (254)
T ss_pred             h--CCCCEEE---EeCC-Ccchh-eecHHHHHHHHhhCCC---CcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCC
Confidence            3  2355553   3311 11111 1123334445555543   35677889999 8999999999999999999999999


Q ss_pred             CHHHHHHHHH
Q 029661          171 DYAEAIKGIK  180 (190)
Q Consensus       171 dp~~~~~~l~  180 (190)
                      |+.++++.+.
T Consensus       244 ~~~~a~~~l~  253 (254)
T COG0134         244 DPEEALRELL  253 (254)
T ss_pred             CHHHHHHHhh
Confidence            9999988763

>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2

Probab=98.88  E-value=5.2e-09  Score=86.08  Aligned_cols=161  Identities=16%  Similarity=0.097  Sum_probs=100.3

Q ss_pred             CCCHHHHHH-------hccCCCCcEEEEEeecChH----HHHHHHH-HcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE
Q 029661           10 TIGPLVVDA-------LRPVTDLPLDVHLMIVEPE----QRVPDFI-KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA   77 (190)
Q Consensus        10 ~~G~~~v~~-------i~~~~~~~i~~hlmv~dp~----~~i~~~~-~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~   77 (190)
                      .+|++.++.       +++. +.++.+|+|..|..    .|.+.++ ..|+|.+|+|+-.+ .+.+..+++.++++|..+
T Consensus        66 ~~G~~gi~~l~~~~~~~~~~-g~~VilD~K~~DIpnTv~~~a~a~~~~~g~D~vTvh~~~G-~d~l~~~~~~~~~~~~~v  143 (261)
T TIGR02127        66 RFGSEGFKALEEVIAHARSL-GLPVLADVKRGDIGSTASAYAKAWLGHLHADALTVSPYLG-LDSLRPFLEYARANGAGI  143 (261)
T ss_pred             hcCHHHHHHHHHHHHHHHHC-CCeEEEEeeccChHHHHHHHHHHHHhhcCCCEEEECCcCC-HHHHHHHHHHHhhcCCEE
Confidence            468888844       4442 67899999999964    4677767 78999999999774 677888998888888877


Q ss_pred             EEEEcCCCC-HHHHHHhh-----cccceEEEEee----ec---CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC
Q 029661           78 GVVLNPATS-LSAIECVL-----DVVDLVLIMSV----NP---GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV  144 (190)
Q Consensus        78 g~~i~p~t~-~~~~~~~~-----~~~d~i~~m~v----~p---G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI  144 (190)
                      ++.+.++.| -..++...     +..+.|.-+..    .+   |..|-.......+.++++|+.+++    +. -+..||
T Consensus       144 ~VlvlTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~gAT~p~e~~~iR~~~~~----~~-il~PGi  218 (261)
T TIGR02127       144 FVLVKTSNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVVGATSPGDLLRLRIEMPT----AP-FLVPGF  218 (261)
T ss_pred             EEEEeCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEECCCCHHHHHHHHHhCCC----Ce-EEeCCc
Confidence            776655553 22333211     01122211111    11   222322211123456777776532    33 377777


Q ss_pred             Ccc-----cHHH-HHHcCCC-EEEEcccccCCCCHHHHHH
Q 029661          145 GPK-----NAYK-VIEAGAN-ALVAGSAVFGAKDYAEAIK  177 (190)
Q Consensus       145 ~~e-----~~~~-~~~aGad-~~VvGsaI~~~~dp~~~~~  177 (190)
                      +++     ..+. +-+.|+| .+++||+|+.+.||.++++
T Consensus       219 gaqG~~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a~~  258 (261)
T TIGR02127       219 GAQGAEAADLRGLFGADGSGLLINSSRGVLFAGPRSSALV  258 (261)
T ss_pred             CCCCCCHHHHHHHhcccCCCEEEEcCHHHhcCCChHHHHH
Confidence            743     3333 2236888 8999999999999987754

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=98.87  E-value=2.8e-07  Score=72.36  Aligned_cols=161  Identities=24%  Similarity=0.273  Sum_probs=108.7

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecCh---------HHHHHHHHHcCCCEEEEcccCC--CcchHHHHHHHHHHhCCcEEEE
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEP---------EQRVPDFIKAGADIVSVHCEQS--STIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp---------~~~i~~~~~~Gad~v~vh~e~~--~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      |.+-|+++|+..++|+.==.|=.-|         .+-++.++++|++.|.+-+-.-  +..+++++++.+|..|....-.
T Consensus        54 gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD  133 (229)
T COG3010          54 GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMAD  133 (229)
T ss_pred             chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEec
Confidence            6677888888888888664443212         3457889999999999864320  1226778888877777655555


Q ss_pred             EcCCCCHHHHHHhhcccceEEEEeeecCCCCc--ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCC
Q 029661           81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGA  157 (190)
Q Consensus        81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq--~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGa  157 (190)
                      ++  |.-|-+...-..+|+|-  +.--|+.+.  .-...-++.++++.+      .++.+-+-|.++ |+.++++.+.||
T Consensus       134 ~S--t~ee~l~a~~~G~D~IG--TTLsGYT~~~~~~~~pDf~lvk~l~~------~~~~vIAEGr~~tP~~Ak~a~~~Ga  203 (229)
T COG3010         134 CS--TFEEGLNAHKLGFDIIG--TTLSGYTGYTEKPTEPDFQLVKQLSD------AGCRVIAEGRYNTPEQAKKAIEIGA  203 (229)
T ss_pred             cC--CHHHHHHHHHcCCcEEe--cccccccCCCCCCCCCcHHHHHHHHh------CCCeEEeeCCCCCHHHHHHHHHhCC
Confidence            54  22232322223588884  333455442  112233566666655      246788999999 899999999999


Q ss_pred             CEEEEcccccCCCCHHHHHHHHHHhhcc
Q 029661          158 NALVAGSAVFGAKDYAEAIKGIKTSKRP  185 (190)
Q Consensus       158 d~~VvGsaI~~~~dp~~~~~~l~~~~~~  185 (190)
                      +.+||||||++   |++-.+|+.+.++.
T Consensus       204 ~aVvVGsAITR---p~~It~~F~~~ik~  228 (229)
T COG3010         204 DAVVVGSAITR---PEEITQWFVDAIKS  228 (229)
T ss_pred             eEEEECcccCC---HHHHHHHHHHHHhc
Confidence            99999999998   77888888877664

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=98.85  E-value=1.4e-08  Score=83.89  Aligned_cols=95  Identities=14%  Similarity=0.265  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHHhCC-cEEEEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE
Q 029661           62 HLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV  140 (190)
Q Consensus        62 ~~~~~i~~i~~~g~-~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v  140 (190)
                      .+...++.+|+... ...+.++++|+.+..+.+...+|+|++..+.|            +.++++.+++++. .++++++
T Consensus       166 ~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~~------------e~l~~~v~~i~~~-~~i~i~a  232 (269)
T cd01568         166 GITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMSP------------EELKEAVKLLKGL-PRVLLEA  232 (269)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhccC-CCeEEEE
Confidence            45667888888643 44566666677665555556799998854433            3344444444332 4578999


Q ss_pred             eCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661          141 DGGVGPKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       141 dGGI~~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .||||++|+.++.++|+|++++|+..+++
T Consensus       233 sGGIt~~ni~~~a~~Gad~Isvgal~~s~  261 (269)
T cd01568         233 SGGITLENIRAYAETGVDVISTGALTHSA  261 (269)
T ss_pred             ECCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence            99999999999999999999997666654

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=98.83  E-value=1.3e-07  Score=76.66  Aligned_cols=147  Identities=17%  Similarity=0.154  Sum_probs=99.8

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcCC------
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPA------   84 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p~------   84 (190)
                      ..+.+++|.+.++.|+.+.==+.+.+ -++.+.++||+.+++.-++  ..+ +-.-+.++++|. ++.+++...      
T Consensus        66 n~~~i~~i~~~~~~~v~vgGGir~~e-dv~~~l~~Ga~~viigt~~--~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~  141 (233)
T cd04723          66 NDEAIRELAAAWPLGLWVDGGIRSLE-NAQEWLKRGASRVIVGTET--LPS-DDDEDRLAALGEQRLVLSLDFRGGQLLK  141 (233)
T ss_pred             cHHHHHHHHHhCCCCEEEecCcCCHH-HHHHHHHcCCCeEEEccee--ccc-hHHHHHHHhcCCCCeEEEEeccCCeecc
Confidence            35677888776666666554444433 4667888999999998875  344 445666777776 666665532      


Q ss_pred             -----CCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCC
Q 029661           85 -----TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGAN  158 (190)
Q Consensus        85 -----t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad  158 (190)
                           ++.+.++.+.+.++.+++..+..-.+++...   ++.++++.+..     +.++.+.|||+ .+++..+.+.|++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~---~~~~~~i~~~~-----~ipvi~~GGi~s~edi~~l~~~G~~  213 (233)
T cd04723         142 PTDFIGPEELLRRLAKWPEELIVLDIDRVGSGQGPD---LELLERLAARA-----DIPVIAAGGVRSVEDLELLKKLGAS  213 (233)
T ss_pred             ccCcCCHHHHHHHHHHhCCeEEEEEcCccccCCCcC---HHHHHHHHHhc-----CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence                 2455566665557888888776432333222   33444444432     46899999999 7999999999999


Q ss_pred             EEEEcccccCCC
Q 029661          159 ALVAGSAVFGAK  170 (190)
Q Consensus       159 ~~VvGsaI~~~~  170 (190)
                      .+++||+++...
T Consensus       214 ~vivGsal~~g~  225 (233)
T cd04723         214 GALVASALHDGG  225 (233)
T ss_pred             EEEEehHHHcCC
Confidence            999999998763

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=98.82  E-value=1.5e-07  Score=77.91  Aligned_cols=137  Identities=15%  Similarity=0.211  Sum_probs=98.0

Q ss_pred             HHHHHhccC-CCCcEEEEEeecChHHHH-HHHHHcCCCEEEEcccCCC-------------cchHHHHHHHHHHh--CCc
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVEPEQRV-PDFIKAGADIVSVHCEQSS-------------TIHLHRTLNQIKDL--GAK   76 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i-~~~~~~Gad~v~vh~e~~~-------------~~~~~~~i~~i~~~--g~~   76 (190)
                      ++|+.+|+. ++..+.+.-|+....+.+ +.+..+|....|-..-+..             .+++.+.++.+|+.  +.+
T Consensus       111 ~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~k  190 (277)
T TIGR01334       111 KMVTLAKKISPMAVVACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPERK  190 (277)
T ss_pred             HHHHHHHhcCCCCEEEecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCCCC
Confidence            567888864 788999988888666654 5578889888887643310             12688899999987  555


Q ss_pred             EEEEEcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHc
Q 029661           77 AGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA  155 (190)
Q Consensus        77 ~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~a  155 (190)
                      +.+-+.   +.+.+++.++. +|.|++   +      .|.|+.+   +++.+++++.+.++.+++.||||++|+.++.+.
T Consensus       191 IeVEv~---tleea~ea~~~GaDiI~l---D------n~~~e~l---~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~  255 (277)
T TIGR01334       191 ITVEAD---TIEQALTVLQASPDILQL---D------KFTPQQL---HHLHERLKFFDHIPTLAAAGGINPENIADYIEA  255 (277)
T ss_pred             EEEECC---CHHHHHHHHHcCcCEEEE---C------CCCHHHH---HHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence            555443   66777777664 899876   2      2444433   333444433345678999999999999999999


Q ss_pred             CCCEEEEccc
Q 029661          156 GANALVAGSA  165 (190)
Q Consensus       156 Gad~~VvGsa  165 (190)
                      |+|++++|+-
T Consensus       256 GvD~is~gal  265 (277)
T TIGR01334       256 GIDLFITSAP  265 (277)
T ss_pred             CCCEEEeCcc
Confidence            9999999985

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=98.77  E-value=3.8e-07  Score=75.83  Aligned_cols=147  Identities=18%  Similarity=0.174  Sum_probs=100.0

Q ss_pred             CCCcEEEEEeecChHHH---HHHHHHcCCCEEEEcccCCC----------cchHHHHHHHHHHh-CCcEEEEEcCCCCHH
Q 029661           23 TDLPLDVHLMIVEPEQR---VPDFIKAGADIVSVHCEQSS----------TIHLHRTLNQIKDL-GAKAGVVLNPATSLS   88 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~---i~~~~~~Gad~v~vh~e~~~----------~~~~~~~i~~i~~~-g~~~g~~i~p~t~~~   88 (190)
                      ++.|+.+.+.-.+++.+   ++.+.++|+|.+-++..+..          .+.+.++++++|+. ++.+.+=+++..+.+
T Consensus        97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~  176 (289)
T cd02810          97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLE  176 (289)
T ss_pred             CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHH
Confidence            57899999988888766   45577889999999865310          12356778888875 666777677776643


Q ss_pred             HHHHhh----c-ccceEEEEeeec------------------CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC
Q 029661           89 AIECVL----D-VVDLVLIMSVNP------------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG  145 (190)
Q Consensus        89 ~~~~~~----~-~~d~i~~m~v~p------------------G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~  145 (190)
                      ...+++    + .+|.|.+-....                  |.+|....+..++.++++++..+   .+++|...|||+
T Consensus       177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~---~~ipiia~GGI~  253 (289)
T cd02810         177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ---LDIPIIGVGGID  253 (289)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC---CCCCEEEECCCC
Confidence            333332    2 278887643211                  11222223445666777776553   147899999998


Q ss_pred             -cccHHHHHHcCCCEEEEcccccCC-CCH
Q 029661          146 -PKNAYKVIEAGANALVAGSAVFGA-KDY  172 (190)
Q Consensus       146 -~e~~~~~~~aGad~~VvGsaI~~~-~dp  172 (190)
                       ++++.+++.+|||.+-+||+++.. ++.
T Consensus       254 ~~~da~~~l~~GAd~V~vg~a~~~~GP~~  282 (289)
T cd02810         254 SGEDVLEMLMAGASAVQVATALMWDGPDV  282 (289)
T ss_pred             CHHHHHHHHHcCccHheEcHHHHhcCccH
Confidence             799999999999999999999875 443

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.76  E-value=2.3e-07  Score=75.27  Aligned_cols=145  Identities=12%  Similarity=0.120  Sum_probs=99.1

Q ss_pred             HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC--------
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA--------   84 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~--------   84 (190)
                      .+.|++|.+.++.|+.+.==+.+.+ -++.+.++||+.+++.-++  .++++-+-+.++++|-++.+++...        
T Consensus        65 ~~~I~~i~~~~~~pi~vGGGIrs~e-~v~~~l~~Ga~kvvigt~a--~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~g  141 (234)
T PRK13587         65 FDYIKSLRRLTTKDIEVGGGIRTKS-QIMDYFAAGINYCIVGTKG--IQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNG  141 (234)
T ss_pred             HHHHHHHHhhcCCeEEEcCCcCCHH-HHHHHHHCCCCEEEECchH--hcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecC
Confidence            5688888876666666543344433 4677888999999998775  5567666666777776766655421        


Q ss_pred             ----C---CHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHc
Q 029661           85 ----T---SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA  155 (190)
Q Consensus        85 ----t---~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~a  155 (190)
                          +   +.+.++++.+. +..++++.+......+...   ++.++++++..     +.++.+.||++ ++.+..+.+.
T Consensus       142 w~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~---~~li~~l~~~~-----~ipvi~~GGi~s~edi~~l~~~  213 (234)
T PRK13587        142 WEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPN---FELTGQLVKAT-----TIPVIASGGIRHQQDIQRLASL  213 (234)
T ss_pred             CcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccC---HHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHHc
Confidence                1   14455555443 5788888887533333333   33344444432     36899999999 6999999999


Q ss_pred             CCCEEEEcccccC
Q 029661          156 GANALVAGSAVFG  168 (190)
Q Consensus       156 Gad~~VvGsaI~~  168 (190)
                      |++.+++||++++
T Consensus       214 G~~~vivG~a~~~  226 (234)
T PRK13587        214 NVHAAIIGKAAHQ  226 (234)
T ss_pred             CCCEEEEhHHHHh
Confidence            9999999999987

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=98.74  E-value=1.4e-06  Score=72.81  Aligned_cols=152  Identities=19%  Similarity=0.267  Sum_probs=102.0

Q ss_pred             HHHHHhcc---CCCCcEEEEEeecChHHHH---HHHHHcCCCEEEEcccCC-----------CcchHHHHHHHHHHh-CC
Q 029661           14 LVVDALRP---VTDLPLDVHLMIVEPEQRV---PDFIKAGADIVSVHCEQS-----------STIHLHRTLNQIKDL-GA   75 (190)
Q Consensus        14 ~~v~~i~~---~~~~~i~~hlmv~dp~~~i---~~~~~~Gad~v~vh~e~~-----------~~~~~~~~i~~i~~~-g~   75 (190)
                      ..++.+++   ..+.|+.+-+.-.+++.|.   +.+.++|+|+|-+|.-+.           +.+.+.++++++|+. ++
T Consensus        76 ~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~  155 (296)
T cd04740          76 AFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV  155 (296)
T ss_pred             HHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC
Confidence            34555543   2578999999988887764   446788999999975431           112356788888887 77


Q ss_pred             cEEEEEcCCCC-HHHHHHhhc--ccceEEEEeee-----------c-------CCCCcccchhhHHHHHHHHHHHhhcCC
Q 029661           76 KAGVVLNPATS-LSAIECVLD--VVDLVLIMSVN-----------P-------GFGGQSFIESQVKKISDLRRMCLEKGV  134 (190)
Q Consensus        76 ~~g~~i~p~t~-~~~~~~~~~--~~d~i~~m~v~-----------p-------G~~gq~~~~~~~~ki~~~~~~~~~~~~  134 (190)
                      .+.+=++|+.+ ...+.+.+.  .+|.|.+....           |       |.+|....+..++.++++++..     
T Consensus       156 Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~-----  230 (296)
T cd04740         156 PVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV-----  230 (296)
T ss_pred             CEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-----
Confidence            77776777643 222233232  36776542111           1       2334333455566777776643     


Q ss_pred             CCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCC
Q 029661          135 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       135 ~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      +++|...|||+ ++++.+++++|||.+-+||+++..+
T Consensus       231 ~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p  267 (296)
T cd04740         231 EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDP  267 (296)
T ss_pred             CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcCh
Confidence            47899999996 8999999999999999999988743

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK08999 hypothetical protein; Provisional

Probab=98.72  E-value=5.3e-08  Score=81.84  Aligned_cols=124  Identities=15%  Similarity=0.107  Sum_probs=83.3

Q ss_pred             EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhh-cccceEEEEeee
Q 029661           28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVN  106 (190)
Q Consensus        28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~  106 (190)
                      .+.|.++|   +.+.+.+.|+|+|++....  . ..... +. ...+..+|++.+   ..+.+.+.. ..+||+.+-.+.
T Consensus       188 ~~~liind---~~~la~~~~~~GvHl~~~d--~-~~~~~-r~-~~~~~~ig~S~h---~~~~~~~a~~~~~dyi~~gpvf  256 (312)
T PRK08999        188 GAQLLLNG---DPELAEDLGADGVHLTSAQ--L-AALAA-RP-LPAGRWVAASCH---DAEELARAQRLGVDFAVLSPVQ  256 (312)
T ss_pred             CCEEEEEC---cHHHHHhcCCCEEEcChhh--c-ChHhh-cc-CCCCCEEEEecC---CHHHHHHHHhcCCCEEEECCCc
Confidence            34556666   6778888999999998763  2 11111 11 123455666664   333333332 258999988887


Q ss_pred             cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccccc
Q 029661          107 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus       107 pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~  167 (190)
                      |..+-....+..++.++++++..     +.++.+-||||++|+.++.++|+|++.+-|+|+
T Consensus       257 ~t~tk~~~~~~g~~~~~~~~~~~-----~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~~~~  312 (312)
T PRK08999        257 PTASHPGAAPLGWEGFAALIAGV-----PLPVYALGGLGPGDLEEAREHGAQGIAGIRGLW  312 (312)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHhC-----CCCEEEECCCCHHHHHHHHHhCCCEEEEEEEeC
Confidence            65442222344567777776653     478999999999999999999999999999875

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=98.72  E-value=5.5e-07  Score=74.93  Aligned_cols=156  Identities=14%  Similarity=0.197  Sum_probs=109.9

Q ss_pred             HHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc----chHHHHHHHHHHhCCcEEEE---Ec-------
Q 029661           17 DALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST----IHLHRTLNQIKDLGAKAGVV---LN-------   82 (190)
Q Consensus        17 ~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~----~~~~~~i~~i~~~g~~~g~~---i~-------   82 (190)
                      +...+..++|+.+||==..-.+.++.+.+.|+++|-+=.-..+.    +.-.++.+.++++|..+...   +.       
T Consensus        67 ~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~  146 (281)
T PRK06806         67 VAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSE  146 (281)
T ss_pred             HHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcc
Confidence            33334467899999855434567888999999999884332111    12356667777788766432   21       


Q ss_pred             ----CCCCHHHHHHhh--cccceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC--CCCcccHHHH
Q 029661           83 ----PATSLSAIECVL--DVVDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG--GVGPKNAYKV  152 (190)
Q Consensus        83 ----p~t~~~~~~~~~--~~~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG--GI~~e~~~~~  152 (190)
                          ..|..+..+++.  ..+||+.+  -++++.+.  .-.+-.++.++++++..     ++++..-|  ||+.++++++
T Consensus       147 ~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~--~~~~l~~~~L~~i~~~~-----~iPlV~hG~SGI~~e~~~~~  219 (281)
T PRK06806        147 DIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYN--GDPNLRFDRLQEINDVV-----HIPLVLHGGSGISPEDFKKC  219 (281)
T ss_pred             cccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCC--CCCccCHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHH
Confidence                025556666665  35899988  77776442  12344577888887764     47899999  9999999999


Q ss_pred             HHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661          153 IEAGANALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       153 ~~aGad~~VvGsaI~~~~dp~~~~~~l~~  181 (190)
                      +++|++.+-++|+|+.  ++.++++++.+
T Consensus       220 i~~G~~kinv~T~i~~--a~~~a~~~~~~  246 (281)
T PRK06806        220 IQHGIRKINVATATFN--SVITAVNNLVL  246 (281)
T ss_pred             HHcCCcEEEEhHHHHH--HHHHHHHHHHH
Confidence            9999999999999998  57888877654

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=98.72  E-value=1.1e-06  Score=71.47  Aligned_cols=158  Identities=21%  Similarity=0.209  Sum_probs=100.7

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEc--------
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLN--------   82 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~--------   82 (190)
                      ..+.++++++..++|+.+-==+.+++. ++.+.+.|++.+.+--..  ..++..+.+.+++.+. ++.+.+.        
T Consensus        59 ~~~~i~~i~~~~~~pv~~~GGI~s~~d-~~~~l~~G~~~v~ig~~~--~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~  135 (243)
T cd04731          59 MLDVVERVAEEVFIPLTVGGGIRSLED-ARRLLRAGADKVSINSAA--VENPELIREIAKRFGSQCVVVSIDAKRRGDGG  135 (243)
T ss_pred             cHHHHHHHHHhCCCCEEEeCCCCCHHH-HHHHHHcCCceEEECchh--hhChHHHHHHHHHcCCCCEEEEEEeeecCCCc
Confidence            356788888877778776545555554 455667899999886553  3455555555666653 3544443        


Q ss_pred             ------------CCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-ccc
Q 029661           83 ------------PATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKN  148 (190)
Q Consensus        83 ------------p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~  148 (190)
                                  .....+..+.+.+ .+|.+++.++......+.+   .++.++++++..     +.++.+.|||+ ++.
T Consensus       136 ~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~~~-----~~pvia~GGi~~~~d  207 (243)
T cd04731         136 YEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY---DLELIRAVSSAV-----NIPVIASGGAGKPEH  207 (243)
T ss_pred             eEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC---CHHHHHHHHhhC-----CCCEEEeCCCCCHHH
Confidence                        1122333344433 3899998777653223333   344455555442     47899999997 799


Q ss_pred             HHHHHHc-CCCEEEEcccccCCC-CHHHHHHHHH
Q 029661          149 AYKVIEA-GANALVAGSAVFGAK-DYAEAIKGIK  180 (190)
Q Consensus       149 ~~~~~~a-Gad~~VvGsaI~~~~-dp~~~~~~l~  180 (190)
                      +..+.+. |+|.+++||+++... +..+..+.++
T Consensus       208 i~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~~~  241 (243)
T cd04731         208 FVEAFEEGGADAALAASIFHFGEYTIAELKEYLA  241 (243)
T ss_pred             HHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHHHh
Confidence            9998887 999999999998754 4444444443

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=98.72  E-value=6.3e-07  Score=72.46  Aligned_cols=58  Identities=22%  Similarity=0.416  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhhcCCCC-eEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhh
Q 029661          119 VKKISDLRRMCLEKGVNP-WIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK  183 (190)
Q Consensus       119 ~~ki~~~~~~~~~~~~~~-~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~  183 (190)
                      .+.++++++..     +. ++.+.|||+ +++++++.++|||.+|+||++.+  ||.+.++.+++.+
T Consensus       172 ~e~I~~v~~~~-----~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~~  231 (232)
T PRK04169        172 PEMVKAVKKAL-----DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKAI  231 (232)
T ss_pred             HHHHHHHHHhc-----CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhhc
Confidence            44566666653     24 789999999 68999999999999999999986  5667777776654

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=98.71  E-value=3.9e-07  Score=83.99  Aligned_cols=159  Identities=20%  Similarity=0.199  Sum_probs=116.6

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE   91 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~   91 (190)
                      .++.++.+|+.+++|+...=.+-||... ..+..+|||.|.+.....+.+.+.++++.+++.|+.+-+-++....+   +
T Consensus        99 s~~~l~~vr~~v~~PvLrKDFIid~~QI-~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el---~  174 (695)
T PRK13802         99 SLDDFDKVRAAVHIPVLRKDFIVTDYQI-WEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEI---E  174 (695)
T ss_pred             CHHHHHHHHHhCCCCEEeccccCCHHHH-HHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHH---H
Confidence            5677888888888998875556676644 46788999999998775334579999999999999999988744444   3


Q ss_pred             Hhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661           92 CVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus        92 ~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      ..++ .++.|.+=..+.    ..| ...++.-.++..++++   +..+..-+||+ ++++..+.++|+|.+.+|+++.++
T Consensus       175 ~a~~~ga~iiGINnRdL----~tf-~vd~~~t~~L~~~ip~---~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~  246 (695)
T PRK13802        175 RAIAAGAKVIGINARNL----KDL-KVDVNKYNELAADLPD---DVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA  246 (695)
T ss_pred             HHHhCCCCEEEEeCCCC----ccc-eeCHHHHHHHHhhCCC---CcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence            4333 466664422221    112 1224555666777764   34455669998 799999999999999999999999


Q ss_pred             CCHHHHHHHHHHh
Q 029661          170 KDYAEAIKGIKTS  182 (190)
Q Consensus       170 ~dp~~~~~~l~~~  182 (190)
                      +||.+.+++|...
T Consensus       247 ~dp~~~~~~l~~~  259 (695)
T PRK13802        247 DDHELAVERLVKA  259 (695)
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999998653

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=98.70  E-value=3.8e-07  Score=74.91  Aligned_cols=130  Identities=22%  Similarity=0.274  Sum_probs=86.3

Q ss_pred             HHHHHHHcCCCEEEEcccCCC------cchHHHHHHHHHHhCCcEEEEEc------CCCCHHHHHH----hh-cccceEE
Q 029661           39 RVPDFIKAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLN------PATSLSAIEC----VL-DVVDLVL  101 (190)
Q Consensus        39 ~i~~~~~~Gad~v~vh~e~~~------~~~~~~~i~~i~~~g~~~g~~i~------p~t~~~~~~~----~~-~~~d~i~  101 (190)
                      .++.+.+.|++.|-+..-.++      .+.+.++.+.++++|+.+.+.+.      +..+.+.+.+    .. ..+|||-
T Consensus        95 ~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyik  174 (258)
T TIGR01949        95 TVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVK  174 (258)
T ss_pred             eHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEe
Confidence            378899999998888542111      12345555566678887665332      2222222222    11 2379986


Q ss_pred             EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-------cccHHHHHHcCCCEEEEcccccCCCCHHH
Q 029661          102 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-------PKNAYKVIEAGANALVAGSAVFGAKDYAE  174 (190)
Q Consensus       102 ~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-------~e~~~~~~~aGad~~VvGsaI~~~~dp~~  174 (190)
                      .     ++.+      .++.++++.+..     ..++.+.|||+       .++++++.++||+++.+||+||+++||.+
T Consensus       175 t-----~~~~------~~~~l~~~~~~~-----~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~  238 (258)
T TIGR01949       175 T-----PYTG------DIDSFRDVVKGC-----PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVG  238 (258)
T ss_pred             c-----cCCC------CHHHHHHHHHhC-----CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHH
Confidence            4     1221      244445444422     36788889999       66888999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 029661          175 AIKGIKTSKR  184 (190)
Q Consensus       175 ~~~~l~~~~~  184 (190)
                      +++.|++.+.
T Consensus       239 ~~~~l~~~i~  248 (258)
T TIGR01949       239 ITKAVCKIVH  248 (258)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=98.66  E-value=1.9e-06  Score=70.46  Aligned_cols=160  Identities=18%  Similarity=0.167  Sum_probs=100.1

Q ss_pred             CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEc--C----
Q 029661           11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLN--P----   83 (190)
Q Consensus        11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~--p----   83 (190)
                      ...+.++++++..++|+.+.==+.+++ -++.+.+.|++.+.+..+.  ..++..+-+..+.+| -++.+++.  .    
T Consensus        61 ~~~~~i~~i~~~~~ipv~~~GGi~s~~-~~~~~l~~Ga~~Viigt~~--l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~  137 (253)
T PRK02083         61 TMLDVVERVAEQVFIPLTVGGGIRSVE-DARRLLRAGADKVSINSAA--VANPELISEAADRFGSQCIVVAIDAKRDPEP  137 (253)
T ss_pred             chHHHHHHHHHhCCCCEEeeCCCCCHH-HHHHHHHcCCCEEEEChhH--hhCcHHHHHHHHHcCCCCEEEEEEeccCCCC
Confidence            446688888876666766633334444 3455666999999998654  345555555555554 23334432  1    


Q ss_pred             --------------C-CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-c
Q 029661           84 --------------A-TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P  146 (190)
Q Consensus        84 --------------~-t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~  146 (190)
                                    . ++.+..+++.+. ++.+++.++......|.+   -++.++++++..     +.++.+.||++ .
T Consensus       138 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~---d~~~i~~~~~~~-----~ipvia~GGv~s~  209 (253)
T PRK02083        138 GRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGY---DLELTRAVSDAV-----NVPVIASGGAGNL  209 (253)
T ss_pred             CCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCc---CHHHHHHHHhhC-----CCCEEEECCCCCH
Confidence                          1 223444444333 788888666542233333   255566666543     46899999999 6


Q ss_pred             ccHHHHHHc-CCCEEEEcccccCC-CCHHHHHHHHHH
Q 029661          147 KNAYKVIEA-GANALVAGSAVFGA-KDYAEAIKGIKT  181 (190)
Q Consensus       147 e~~~~~~~a-Gad~~VvGsaI~~~-~dp~~~~~~l~~  181 (190)
                      +.+.++.+. |+|.+++||++... -++.+..+.+++
T Consensus       210 ~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~  246 (253)
T PRK02083        210 EHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAE  246 (253)
T ss_pred             HHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHH
Confidence            899888874 99999999999864 466666565553

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=98.65  E-value=9.4e-07  Score=71.15  Aligned_cols=147  Identities=17%  Similarity=0.175  Sum_probs=96.5

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC--------
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP--------   83 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p--------   83 (190)
                      ..+.++++++.++.|+.+.=-+.+.+ -++.+.+.||+.|.+-...  .+++..+.+.+++.+-++.+.+..        
T Consensus        62 ~~~~i~~i~~~~~~pv~~~GGI~~~e-d~~~~~~~Ga~~vilg~~~--l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~  138 (233)
T PRK00748         62 NLELIEAIVKAVDIPVQVGGGIRSLE-TVEALLDAGVSRVIIGTAA--VKNPELVKEACKKFPGKIVVGLDARDGKVATD  138 (233)
T ss_pred             cHHHHHHHHHHCCCCEEEcCCcCCHH-HHHHHHHcCCCEEEECchH--HhCHHHHHHHHHHhCCCceeeeeccCCEEEEc
Confidence            35778888887777777644455544 3567788999999887653  334444444455544444444331        


Q ss_pred             -------CCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661           84 -------ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE  154 (190)
Q Consensus        84 -------~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~  154 (190)
                             .++.+..+.+.+ .++.++++++......+  . ..++.++++++..     +.++.+.|||+ ++++.++.+
T Consensus       139 g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~--G-~d~~~i~~l~~~~-----~ipvia~GGi~~~~di~~~~~  210 (233)
T PRK00748        139 GWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLS--G-PNVEATRELAAAV-----PIPVIASGGVSSLDDIKALKG  210 (233)
T ss_pred             cCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcC--C-CCHHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHH
Confidence                   122444555444 37888888777532222  2 2356666666653     36788999999 699999999


Q ss_pred             cC-CCEEEEcccccCC
Q 029661          155 AG-ANALVAGSAVFGA  169 (190)
Q Consensus       155 aG-ad~~VvGsaI~~~  169 (190)
                      .| +|.+++||+++..
T Consensus       211 ~g~~~gv~vg~a~~~~  226 (233)
T PRK00748        211 LGAVEGVIVGRALYEG  226 (233)
T ss_pred             cCCccEEEEEHHHHcC
Confidence            98 9999999998764

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=98.65  E-value=1.4e-06  Score=69.19  Aligned_cols=137  Identities=18%  Similarity=0.098  Sum_probs=95.1

Q ss_pred             CHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661           12 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI   90 (190)
Q Consensus        12 G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~   90 (190)
                      ..+.++++++. ++..+-+-. |.+++. .+.+.++||+.+.-+..      -.++++.++++|+....-+  .||-|..
T Consensus        46 a~~~i~~l~~~~~~~~vGAGT-Vl~~~~-a~~a~~aGA~FivsP~~------~~~v~~~~~~~~i~~iPG~--~TptEi~  115 (204)
T TIGR01182        46 ALDAIRLLRKEVPDALIGAGT-VLNPEQ-LRQAVDAGAQFIVSPGL------TPELAKHAQDHGIPIIPGV--ATPSEIM  115 (204)
T ss_pred             HHHHHHHHHHHCCCCEEEEEe-CCCHHH-HHHHHHcCCCEEECCCC------CHHHHHHHHHcCCcEECCC--CCHHHHH
Confidence            45667788763 556666654 345553 67889999999966544      2368999999988654422  3565555


Q ss_pred             HHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661           91 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus        91 ~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      .-+-..+|.|=+   .|+..   +.  -.+-++.++.-++    +.++...|||+++|++++.++|+..+.+||.+|+.+
T Consensus       116 ~A~~~Ga~~vKl---FPA~~---~G--G~~yikal~~plp----~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~L~~~~  183 (204)
T TIGR01182       116 LALELGITALKL---FPAEV---SG--GVKMLKALAGPFP----QVRFCPTGGINLANVRDYLAAPNVACGGGSWLVPKD  183 (204)
T ss_pred             HHHHCCCCEEEE---CCchh---cC--CHHHHHHHhccCC----CCcEEecCCCCHHHHHHHHhCCCEEEEEChhhcCch
Confidence            555456787754   56421   11  0223566666664    478899999999999999999999999999999753

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=98.64  E-value=1.2e-06  Score=72.42  Aligned_cols=129  Identities=22%  Similarity=0.281  Sum_probs=84.3

Q ss_pred             HHHHHHcCCCEEEEcccCCC------cchHHHHHHHHHHhCCcEEEEE-------cCCCCHHHHHH---hh--cccceEE
Q 029661           40 VPDFIKAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVL-------NPATSLSAIEC---VL--DVVDLVL  101 (190)
Q Consensus        40 i~~~~~~Gad~v~vh~e~~~------~~~~~~~i~~i~~~g~~~g~~i-------~p~t~~~~~~~---~~--~~~d~i~  101 (190)
                      ++.+.+.|||.+-+..-.++      .+.+.++.+.++++|+.+.+..       ......+.+..   ..  ..+|||-
T Consensus        99 ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vK  178 (267)
T PRK07226         99 VEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVK  178 (267)
T ss_pred             HHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEe
Confidence            77899999998877633211      1245566677777888776642       11112122111   11  1378883


Q ss_pred             EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCccc-------HHHHHHcCCCEEEEcccccCCCCHHH
Q 029661          102 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-------AYKVIEAGANALVAGSAVFGAKDYAE  174 (190)
Q Consensus       102 ~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~-------~~~~~~aGad~~VvGsaI~~~~dp~~  174 (190)
                           +++.+      ..+.++++.+.     ...++.+.|||+.+|       +.+++++||+++.+||+||+++||.+
T Consensus       179 -----t~~~~------~~~~l~~~~~~-----~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~  242 (267)
T PRK07226        179 -----TNYTG------DPESFREVVEG-----CPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEA  242 (267)
T ss_pred             -----eCCCC------CHHHHHHHHHh-----CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHH
Confidence                 22222      12333433332     236899999999876       77778999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 029661          175 AIKGIKTSKR  184 (190)
Q Consensus       175 ~~~~l~~~~~  184 (190)
                      .++.+++.+.
T Consensus       243 ~~~~l~~~v~  252 (267)
T PRK07226        243 ITRAISAVVH  252 (267)
T ss_pred             HHHHHHHHHh
Confidence            9999998664

>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated

Probab=98.63  E-value=1.9e-07  Score=82.71  Aligned_cols=151  Identities=15%  Similarity=0.179  Sum_probs=97.0

Q ss_pred             CCCcEEEEEeecChH---HHHHHHH-HcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHH-HHHH-----
Q 029661           23 TDLPLDVHLMIVEPE---QRVPDFI-KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-AIEC-----   92 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~---~~i~~~~-~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~-~~~~-----   92 (190)
                      +++++.+|.|-.|..   .|.+.++ ..|+|.||+|+-.+ .+++..+++.   .|+.+.+.+.++.|-. .++.     
T Consensus        87 ~~~~vI~DaKrgDI~T~~~yA~a~f~~~~aDAiTv~pymG-~Dsl~pfl~~---~~kgvfvL~~tSNpga~~~Q~~~~~g  162 (477)
T PRK05500         87 PDIPIILDAKHGDLNTSTIFAKTIFEQWQVDAVTLSPYAG-QDHVAPFLVY---PDKGVFILCHTSNPGAIALQEYPTPE  162 (477)
T ss_pred             cCCeEEEEecccChHHHHHHHHHHHhhcCCCEEEECCccC-ccchHHHHhc---CCCcEEEEEeCCCcCHHHHhhcccCC
Confidence            578999999999863   4666666 58999999999875 6778888865   6777777665555532 3331     


Q ss_pred             --hh-cccceEEEEeeecCCCCcccchhh-HHHHHHHHHHHhhcCCCCeEEEeCCCCcc--cHHHHHHcCCC------EE
Q 029661           93 --VL-DVVDLVLIMSVNPGFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVGPK--NAYKVIEAGAN------AL  160 (190)
Q Consensus        93 --~~-~~~d~i~~m~v~pG~~gq~~~~~~-~~ki~~~~~~~~~~~~~~~i~vdGGI~~e--~~~~~~~aGad------~~  160 (190)
                        +. ..++.+.-.+ .++.-|-. .+.+ .+.++++|+..++    ..| ...|+..+  ++.+++++|+|      .+
T Consensus       163 ~~ly~~v~~~~~~~~-~~~~~g~V-vGAT~p~~~~~iR~~~p~----~~i-L~PGiGAQGg~~~~~~~~g~~~~~~g~li  235 (477)
T PRK05500        163 NPFYLQVVKEAKTWG-TPEQLGLE-VGTTNPEVLAKIRQIAPE----RLI-LLRSIWAEKGNLNQILTAGLNSNGDGLLI  235 (477)
T ss_pred             CcHHHHHHHHHHHhC-CCCceEEE-ECCCChHHHHHHHHhCCC----CEE-EccccccCCCCHHHHHHhhcccCcCceEE
Confidence              11 1111110000 01100000 1112 3456667776553    222 45555543  48899999998      89


Q ss_pred             EEcccccCCCCHHHHHHHHHHhhc
Q 029661          161 VAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       161 VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      .+|++|..++||.++++++++.+.
T Consensus       236 ~v~R~il~a~~~~~~a~~l~~~i~  259 (477)
T PRK05500        236 PVPQDLLGAANLKEQVKSLREEIN  259 (477)
T ss_pred             EeCHHHhcCCCHHHHHHHHHHHHH
Confidence            999999999999999999998765

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=98.63  E-value=9e-07  Score=74.94  Aligned_cols=158  Identities=21%  Similarity=0.243  Sum_probs=110.7

Q ss_pred             CHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661           12 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI   90 (190)
Q Consensus        12 G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~   90 (190)
                      +++.++++|+. .++|+.+.=.+-||.... .+..+|||.|.+-....+.+++.++++.+++.|+.+-+-++....+   
T Consensus       168 s~e~L~~vr~~~v~lPvLrKDFIID~yQI~-eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~El---  243 (338)
T PLN02460        168 SFENLEAIRNAGVKCPLLCKEFIVDAWQIY-YARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREM---  243 (338)
T ss_pred             CHHHHHHHHHcCCCCCEeeccccCCHHHHH-HHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHH---
Confidence            56788999987 889998866677777554 5777899999987665334579999999999999999988754444   


Q ss_pred             HHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHH-----HHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661           91 ECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRR-----MCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA  162 (190)
Q Consensus        91 ~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~-----~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv  162 (190)
                      +..+.  .++.|.+=..+.    ..|. ..++.-.++..     +++.  .+..+..-.||+ ++++..+.++|+|.|-+
T Consensus       244 erAl~~~ga~iIGINNRdL----~Tf~-vDl~~t~~L~~~~~~~~i~~--~~~~~VsESGI~t~~Dv~~l~~~GadAvLV  316 (338)
T PLN02460        244 DRVLGIEGVELIGINNRSL----ETFE-VDISNTKKLLEGERGEQIRE--KGIIVVGESGLFTPDDVAYVQNAGVKAVLV  316 (338)
T ss_pred             HHHHhcCCCCEEEEeCCCC----Ccce-ECHHHHHHHhhhccccccCC--CCeEEEECCCCCCHHHHHHHHHCCCCEEEE
Confidence            44343  356664322221    1121 11222233333     2211  123455669998 79999999999999999


Q ss_pred             cccccCCCCHHHHHHHHH
Q 029661          163 GSAVFGAKDYAEAIKGIK  180 (190)
Q Consensus       163 GsaI~~~~dp~~~~~~l~  180 (190)
                      |+++.+++||.+++++|.
T Consensus       317 GEsLMr~~dp~~~l~~L~  334 (338)
T PLN02460        317 GESLVKQDDPGKGIAGLF  334 (338)
T ss_pred             CHHHhCCCCHHHHHHHHh
Confidence            999999999999998874

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=98.63  E-value=4.5e-07  Score=73.04  Aligned_cols=47  Identities=36%  Similarity=0.557  Sum_probs=37.4

Q ss_pred             CCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661          135 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       135 ~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~  181 (190)
                      +.++-+.|||+ .|++.++.++|||.+|+|.++.+..+.+++++.+++
T Consensus       182 ~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~i~a  229 (230)
T PF01884_consen  182 DIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALETIKA  229 (230)
T ss_dssp             SSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTHHHH
T ss_pred             CccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHHHhh
Confidence            57899999999 799999999999999999999987666666666543

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=98.62  E-value=5.6e-06  Score=66.88  Aligned_cols=159  Identities=17%  Similarity=0.221  Sum_probs=108.5

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC-------
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-------   84 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~-------   84 (190)
                      ..+.+++|.+.++.|+.+===+ +-.+.++.+.++|++.|++.--+  .++++.+.+.++++|-++.+++...       
T Consensus        63 n~~~i~~i~~~~~~~vQvGGGI-Rs~~~v~~ll~~G~~rViiGt~a--v~~p~~v~~~~~~~g~rivv~lD~r~g~vav~  139 (241)
T COG0106          63 NLEAIKEILEATDVPVQVGGGI-RSLEDVEALLDAGVARVIIGTAA--VKNPDLVKELCEEYGDRIVVALDARDGKVAVS  139 (241)
T ss_pred             cHHHHHHHHHhCCCCEEeeCCc-CCHHHHHHHHHCCCCEEEEecce--ecCHHHHHHHHHHcCCcEEEEEEccCCccccc
Confidence            4567888877666665552112 23457888999999999998775  6789999999999998887776522       


Q ss_pred             --------CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661           85 --------TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE  154 (190)
Q Consensus        85 --------t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~  154 (190)
                              ++.+..+++.+. +..+++-.  ...+|-.-.++ ++..+++.+..     +.++.+.|||+ .+.++.+.+
T Consensus       140 GW~e~s~~~~~~l~~~~~~~g~~~ii~Td--I~~DGtl~G~n-~~l~~~l~~~~-----~ipviaSGGv~s~~Di~~l~~  211 (241)
T COG0106         140 GWQEDSGVELEELAKRLEEVGLAHILYTD--ISRDGTLSGPN-VDLVKELAEAV-----DIPVIASGGVSSLDDIKALKE  211 (241)
T ss_pred             cccccccCCHHHHHHHHHhcCCCeEEEEe--cccccccCCCC-HHHHHHHHHHh-----CcCEEEecCcCCHHHHHHHHh
Confidence                    223444555443 44555432  33333222222 33445555544     46889999999 699999999


Q ss_pred             c-CCCEEEEcccccCCC-CHHHHHHHHHH
Q 029661          155 A-GANALVAGSAVFGAK-DYAEAIKGIKT  181 (190)
Q Consensus       155 a-Gad~~VvGsaI~~~~-dp~~~~~~l~~  181 (190)
                      . |+..+|+|||++... ++.++++.+++
T Consensus       212 ~~G~~GvIvG~ALy~g~~~l~ea~~~~~~  240 (241)
T COG0106         212 LSGVEGVIVGRALYEGKFTLEEALACVRN  240 (241)
T ss_pred             cCCCcEEEEehHHhcCCCCHHHHHHHHhc
Confidence            9 899999999999764 67888776653

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=98.62  E-value=2.1e-06  Score=70.43  Aligned_cols=157  Identities=19%  Similarity=0.208  Sum_probs=100.7

Q ss_pred             HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEc----C----
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLN----P----   83 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~----p----   83 (190)
                      .+.+++|++.++.|+.+.==+.+++. ++.+.++||+.+.+.-+.  .+++..+-+..+.+| -++.+++.    +    
T Consensus        63 ~~~i~~i~~~~~~pv~~~GGi~s~~d-~~~~~~~Ga~~vivgt~~--~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~  139 (254)
T TIGR00735        63 IDVVERTAETVFIPLTVGGGIKSIED-VDKLLRAGADKVSINTAA--VKNPELIYELADRFGSQCIVVAIDAKRVYVNSY  139 (254)
T ss_pred             HHHHHHHHHhcCCCEEEECCCCCHHH-HHHHHHcCCCEEEEChhH--hhChHHHHHHHHHcCCCCEEEEEEeccCCCCCC
Confidence            46788887777777777444445443 455677899999997664  455665566666676 45555554    1    


Q ss_pred             ---------------CCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-c
Q 029661           84 ---------------ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P  146 (190)
Q Consensus        84 ---------------~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~  146 (190)
                                     ..+.+..+.+.+ .+|.|++.+++.....+.+   -++-++++++..     +.++.+.|||+ +
T Consensus       140 ~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~---~~~~~~~i~~~~-----~ipvia~GGi~s~  211 (254)
T TIGR00735       140 CWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGY---DLELTKAVSEAV-----KIPVIASGGAGKP  211 (254)
T ss_pred             ccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCC---CHHHHHHHHHhC-----CCCEEEeCCCCCH
Confidence                           112333344433 3788888766553222222   244455555543     46899999999 7


Q ss_pred             ccHHHHHHcC-CCEEEEcccccCCC-CHHHHHHHHH
Q 029661          147 KNAYKVIEAG-ANALVAGSAVFGAK-DYAEAIKGIK  180 (190)
Q Consensus       147 e~~~~~~~aG-ad~~VvGsaI~~~~-dp~~~~~~l~  180 (190)
                      +.+.++.+.| +|.+++|++++... +..+..+.++
T Consensus       212 ~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~  247 (254)
T TIGR00735       212 EHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA  247 (254)
T ss_pred             HHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence            9999999988 99999999998653 5554444444

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=98.61  E-value=2.5e-06  Score=68.82  Aligned_cols=145  Identities=18%  Similarity=0.170  Sum_probs=92.5

Q ss_pred             CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCc-EEEEEc--C----
Q 029661           11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK-AGVVLN--P----   83 (190)
Q Consensus        11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~-~g~~i~--p----   83 (190)
                      ...+.++++++.++.|+.+.=-+.+.++ ++.+.+.|++.+.+-...  .+++..+.+..++++.+ +.+.+.  .    
T Consensus        61 ~n~~~~~~i~~~~~~pv~~~ggi~~~~d-~~~~~~~G~~~vilg~~~--l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~  137 (232)
T TIGR03572        61 PLFELISNLAEECFMPLTVGGGIRSLED-AKKLLSLGADKVSINTAA--LENPDLIEEAARRFGSQCVVVSIDVKKELDG  137 (232)
T ss_pred             CCHHHHHHHHHhCCCCEEEECCCCCHHH-HHHHHHcCCCEEEEChhH--hcCHHHHHHHHHHcCCceEEEEEEeccCCCC
Confidence            3456788888777777766333444343 445778899999987653  45565555556666544 333322  2    


Q ss_pred             ---------------CCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-c
Q 029661           84 ---------------ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P  146 (190)
Q Consensus        84 ---------------~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~  146 (190)
                                     ..+.+..+.+.+ .+|.+.+.++.+....+..   -++.++++++..     +.++.+.|||+ +
T Consensus       138 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~---~~~~~~~i~~~~-----~ipvia~GGi~s~  209 (232)
T TIGR03572       138 SDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGY---DLELIKTVSDAV-----SIPVIALGGAGSL  209 (232)
T ss_pred             CcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCC---CHHHHHHHHhhC-----CCCEEEECCCCCH
Confidence                           112344444433 3799998887653222222   255566665543     46899999999 6


Q ss_pred             ccHHH-HHHcCCCEEEEcccc
Q 029661          147 KNAYK-VIEAGANALVAGSAV  166 (190)
Q Consensus       147 e~~~~-~~~aGad~~VvGsaI  166 (190)
                      +.+.. +.+.|||.+++||++
T Consensus       210 ~di~~~l~~~gadgV~vg~a~  230 (232)
T TIGR03572       210 DDLVEVALEAGASAVAAASLF  230 (232)
T ss_pred             HHHHHHHHHcCCCEEEEehhh
Confidence            88888 888999999999986

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=98.60  E-value=1.9e-06  Score=70.10  Aligned_cols=155  Identities=13%  Similarity=0.163  Sum_probs=101.2

Q ss_pred             HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC---------
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP---------   83 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p---------   83 (190)
                      .+.+++|.+..+.|+.+.==+.+.+ -++.+.++||+.+.+..+.  ..+++-+.+.+++.+-++.+.+..         
T Consensus        64 ~~~i~~i~~~~~~pv~vgGGirs~e-dv~~~l~~Ga~kvviGs~~--l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~G  140 (241)
T PRK14024         64 RELLAEVVGKLDVKVELSGGIRDDE-SLEAALATGCARVNIGTAA--LENPEWCARVIAEHGDRVAVGLDVRGHTLAARG  140 (241)
T ss_pred             HHHHHHHHHHcCCCEEEcCCCCCHH-HHHHHHHCCCCEEEECchH--hCCHHHHHHHHHHhhhhEEEEEEEeccEeccCC
Confidence            4688888876666666543344433 4677888999999987764  456666666666666555443221         


Q ss_pred             -----CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH--
Q 029661           84 -----ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE--  154 (190)
Q Consensus        84 -----~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~--  154 (190)
                           .++.+.++.+.+. ++.++++++..-...+.  + .++.++++++..     +.++.+.|||+ .+.+.++.+  
T Consensus       141 w~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G--~-d~~~i~~i~~~~-----~ipviasGGi~s~~D~~~l~~~~  212 (241)
T PRK14024        141 WTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTG--P-NLELLREVCART-----DAPVVASGGVSSLDDLRALAELV  212 (241)
T ss_pred             eeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccC--C-CHHHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHhhhc
Confidence                 1123444444333 78999988875322222  2 466666666543     46899999999 688888753  


Q ss_pred             -cCCCEEEEcccccCCC-CHHHHHHH
Q 029661          155 -AGANALVAGSAVFGAK-DYAEAIKG  178 (190)
Q Consensus       155 -aGad~~VvGsaI~~~~-dp~~~~~~  178 (190)
                       .|+|.+++||+++... +++++.+.
T Consensus       213 ~~GvdgV~igra~~~g~~~~~~~~~~  238 (241)
T PRK14024        213 PLGVEGAIVGKALYAGAFTLPEALAV  238 (241)
T ss_pred             cCCccEEEEeHHHHcCCCCHHHHHHH
Confidence             5999999999987654 55555443

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=98.55  E-value=2.1e-06  Score=69.01  Aligned_cols=47  Identities=21%  Similarity=0.411  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          119 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       119 ~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .+.++++|+..+    +.++.++|||+ +++++.+.++|||.+|+||.+++.
T Consensus       167 ~e~i~~v~~~~~----~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d  214 (223)
T TIGR01768       167 PELVAEVKKVLD----KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED  214 (223)
T ss_pred             HHHHHHHHHHcC----CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence            444666666542    36899999999 799999999999999999999984

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=98.54  E-value=6.8e-06  Score=68.85  Aligned_cols=151  Identities=18%  Similarity=0.243  Sum_probs=100.1

Q ss_pred             HHHHhcc---CCCCcEEEEEeecChHHHHH---HHHHcC-CCEEEEcc-----cC-C-----CcchHHHHHHHHHHh-CC
Q 029661           15 VVDALRP---VTDLPLDVHLMIVEPEQRVP---DFIKAG-ADIVSVHC-----EQ-S-----STIHLHRTLNQIKDL-GA   75 (190)
Q Consensus        15 ~v~~i~~---~~~~~i~~hlmv~dp~~~i~---~~~~~G-ad~v~vh~-----e~-~-----~~~~~~~~i~~i~~~-g~   75 (190)
                      +++.+++   ..+.|+.+.+.-.+++.|.+   .+.++| +|+|-++.     .. +     ..+.+.++++++|+. .+
T Consensus        79 ~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~  158 (301)
T PRK07259         79 FIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKV  158 (301)
T ss_pred             HHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCC
Confidence            4555543   24689999998889987754   467788 99998832     11 0     123467888888886 66


Q ss_pred             cEEEEEcCCCC-HHHHHHhhc--ccceEEEEeeecC------------------CCCcccchhhHHHHHHHHHHHhhcCC
Q 029661           76 KAGVVLNPATS-LSAIECVLD--VVDLVLIMSVNPG------------------FGGQSFIESQVKKISDLRRMCLEKGV  134 (190)
Q Consensus        76 ~~g~~i~p~t~-~~~~~~~~~--~~d~i~~m~v~pG------------------~~gq~~~~~~~~ki~~~~~~~~~~~~  134 (190)
                      .+.+=++|+.+ ...+.+.+.  .+|.|.+..+.+|                  .+|....|..++.++++++..     
T Consensus       159 pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~-----  233 (301)
T PRK07259        159 PVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV-----  233 (301)
T ss_pred             CEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC-----
Confidence            66766776532 223333332  3687765332222                  223233344567777776643     


Q ss_pred             CCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCC
Q 029661          135 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       135 ~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      +++|...|||+ ++.+.+++.+|||.+-+||+++..+
T Consensus       234 ~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P  270 (301)
T PRK07259        234 DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDP  270 (301)
T ss_pred             CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCc
Confidence            47899999996 8999999999999999999988743

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=98.52  E-value=4.7e-06  Score=68.53  Aligned_cols=145  Identities=17%  Similarity=0.171  Sum_probs=93.4

Q ss_pred             HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcC--------
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNP--------   83 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p--------   83 (190)
                      .+.+++|.+.++.|+.+.==+.++++ ++.+.++|++.+.+-.+.  .+++..+-+.+++++. ++.+++..        
T Consensus        63 ~~~i~~i~~~~~~pv~~gGGi~s~~d-~~~l~~~G~~~vvigs~~--~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~  139 (258)
T PRK01033         63 YELIENLASECFMPLCYGGGIKTLEQ-AKKIFSLGVEKVSINTAA--LEDPDLITEAAERFGSQSVVVSIDVKKNLGGKF  139 (258)
T ss_pred             HHHHHHHHHhCCCCEEECCCCCCHHH-HHHHHHCCCCEEEEChHH--hcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcE
Confidence            57788888777777655433444443 455668899999997654  4455555555555552 34333331        


Q ss_pred             ------------CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccH
Q 029661           84 ------------ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNA  149 (190)
Q Consensus        84 ------------~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~  149 (190)
                                  ..+.+.++.+.+. ++.++++++.-....+.+   .++.++++++..     +.++.+.|||+ .+++
T Consensus       140 ~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~---d~~~i~~~~~~~-----~ipvIasGGv~s~eD~  211 (258)
T PRK01033        140 DVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGY---DLELLKSFRNAL-----KIPLIALGGAGSLDDI  211 (258)
T ss_pred             EEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCC---CHHHHHHHHhhC-----CCCEEEeCCCCCHHHH
Confidence                        1233444444333 788988877642222222   455566666542     47899999999 6999


Q ss_pred             HHHH-HcCCCEEEEcccccC
Q 029661          150 YKVI-EAGANALVAGSAVFG  168 (190)
Q Consensus       150 ~~~~-~aGad~~VvGsaI~~  168 (190)
                      .++. +.|+|.+++||++.-
T Consensus       212 ~~l~~~~GvdgVivg~a~~~  231 (258)
T PRK01033        212 VEAILNLGADAAAAGSLFVF  231 (258)
T ss_pred             HHHHHHCCCCEEEEcceeee
Confidence            9988 799999999999743

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.52  E-value=3.8e-06  Score=73.03  Aligned_cols=128  Identities=23%  Similarity=0.373  Sum_probs=84.6

Q ss_pred             HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE-cCCCCHHHHHHhhc-ccceEEEEeeecCC--CCcc
Q 029661           38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQS  113 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i-~p~t~~~~~~~~~~-~~d~i~~m~v~pG~--~gq~  113 (190)
                      +.++.+.++|+|.|.+-.-.+......+.++.+|+.--..-+.. +..| .+..+.+++ .+|.|.+ +..||.  +++.
T Consensus       156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T-~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~  233 (404)
T PRK06843        156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVT-KEAALDLISVGADCLKV-GIGPGSICTTRI  233 (404)
T ss_pred             HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCC-HHHHHHHHHcCCCEEEE-CCCCCcCCccee
Confidence            56888999999999974332223457778888887532222323 3333 444555554 4899875 776763  1221


Q ss_pred             ---cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          114 ---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       114 ---~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                         +....+.-+..+++...+  .+.+|.+||||+ ++.+.++..+|||.+.+||++...
T Consensus       234 ~~g~g~p~ltai~~v~~~~~~--~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt  291 (404)
T PRK06843        234 VAGVGVPQITAICDVYEVCKN--TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT  291 (404)
T ss_pred             ecCCCCChHHHHHHHHHHHhh--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeee
Confidence               111234455555555543  347899999998 799999999999999999999874

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=98.52  E-value=2.3e-06  Score=71.20  Aligned_cols=140  Identities=11%  Similarity=0.186  Sum_probs=93.6

Q ss_pred             HHHHHhccC-CCCcEEEEEeecChHHH-HHHHHHcCCCEEEEcccC-------------CCcchHHHHHHHHHHh--CCc
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQ-------------SSTIHLHRTLNQIKDL--GAK   76 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~-i~~~~~~Gad~v~vh~e~-------------~~~~~~~~~i~~i~~~--g~~   76 (190)
                      .+|+.+++. ++..+.+.=|+....+. .+.+..+|....|-..-+             ++.+.+.+.++.+|+.  ..+
T Consensus       112 ~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~k  191 (284)
T PRK06096        112 QMLALLRERYPDGNIACTRKAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAPEKK  191 (284)
T ss_pred             HHHHHHHhhCCCcEEEecCcCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCC
Confidence            567777753 77788887777744454 456788887766642211             0112567888888886  344


Q ss_pred             EEEEEcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHc
Q 029661           77 AGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA  155 (190)
Q Consensus        77 ~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~a  155 (190)
                        +.+... +++.+++.++. +|.|++       +  .|.|+.+   +++.+++++.+.++.+++.||||++|++++.+.
T Consensus       192 --IeVEv~-tleqa~ea~~agaDiI~L-------D--n~~~e~l---~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~t  256 (284)
T PRK06096        192 --IVVEAD-TPKEAIAALRAQPDVLQL-------D--KFSPQQA---TEIAQIAPSLAPHCTLSLAGGINLNTLKNYADC  256 (284)
T ss_pred             --EEEECC-CHHHHHHHHHcCCCEEEE-------C--CCCHHHH---HHHHHHhhccCCCeEEEEECCCCHHHHHHHHhc
Confidence              444433 56666776654 899886       2  3555554   444444443345678999999999999999999


Q ss_pred             CCCEEEEcccccCC
Q 029661          156 GANALVAGSAVFGA  169 (190)
Q Consensus       156 Gad~~VvGsaI~~~  169 (190)
                      |+|++++|+- +.+
T Consensus       257 GvD~Is~gal-~~a  269 (284)
T PRK06096        257 GIRLFITSAP-YYA  269 (284)
T ss_pred             CCCEEEECcc-ccC
Confidence            9999987765 554

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.51  E-value=5e-06  Score=65.88  Aligned_cols=134  Identities=17%  Similarity=0.136  Sum_probs=94.2

Q ss_pred             CHHHHHHhcc-CCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661           12 GPLVVDALRP-VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI   90 (190)
Q Consensus        12 G~~~v~~i~~-~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~   90 (190)
                      ..+.|+++++ +++..+-+-. |.|++ -.+.+.++||+.+.-+..      -.++++.++++|+-...-+.  ||-|..
T Consensus        42 a~~~I~~l~~~~~~~~vGAGT-Vl~~e-~a~~ai~aGA~FivSP~~------~~~vi~~a~~~~i~~iPG~~--TptEi~  111 (201)
T PRK06015         42 ALDAIRAVAAEVEEAIVGAGT-ILNAK-QFEDAAKAGSRFIVSPGT------TQELLAAANDSDVPLLPGAA--TPSEVM  111 (201)
T ss_pred             HHHHHHHHHHHCCCCEEeeEe-CcCHH-HHHHHHHcCCCEEECCCC------CHHHHHHHHHcCCCEeCCCC--CHHHHH
Confidence            4566777775 4566666655 34555 457889999999987764      23578999998887544332  555555


Q ss_pred             HHhhcccceEEEEeeecCC--CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccC
Q 029661           91 ECVLDVVDLVLIMSVNPGF--GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus        91 ~~~~~~~d~i~~m~v~pG~--~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      .-+-...|.|=+   .|+.  +|       .+-|+.++..++    +.++...|||+++|+.++.++|+...+.||.+++
T Consensus       112 ~A~~~Ga~~vK~---FPa~~~GG-------~~yikal~~plp----~~~l~ptGGV~~~n~~~~l~ag~~~~~ggs~l~~  177 (201)
T PRK06015        112 ALREEGYTVLKF---FPAEQAGG-------AAFLKALSSPLA----GTFFCPTGGISLKNARDYLSLPNVVCVGGSWVAP  177 (201)
T ss_pred             HHHHCCCCEEEE---CCchhhCC-------HHHHHHHHhhCC----CCcEEecCCCCHHHHHHHHhCCCeEEEEchhhCC
Confidence            555445777754   5642  13       233566677665    4788999999999999999999999999999986


Q ss_pred             C
Q 029661          169 A  169 (190)
Q Consensus       169 ~  169 (190)
                      .
T Consensus       178 ~  178 (201)
T PRK06015        178 K  178 (201)
T ss_pred             c
Confidence            4

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=98.51  E-value=2.6e-06  Score=67.30  Aligned_cols=137  Identities=22%  Similarity=0.210  Sum_probs=91.5

Q ss_pred             CHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661           12 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI   90 (190)
Q Consensus        12 G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~   90 (190)
                      ..+.|+.+++. ++..+-+-. |.+++ -++.+.++||+.+.-+..      -.++++.++++|+.+.--+.  ||-|..
T Consensus        46 a~~~I~~l~~~~p~~~vGAGT-V~~~e-~a~~a~~aGA~FivSP~~------~~~v~~~~~~~~i~~iPG~~--TptEi~  115 (196)
T PF01081_consen   46 ALEAIEALRKEFPDLLVGAGT-VLTAE-QAEAAIAAGAQFIVSPGF------DPEVIEYAREYGIPYIPGVM--TPTEIM  115 (196)
T ss_dssp             HHHHHHHHHHHHTTSEEEEES---SHH-HHHHHHHHT-SEEEESS--------HHHHHHHHHHTSEEEEEES--SHHHHH
T ss_pred             HHHHHHHHHHHCCCCeeEEEe-ccCHH-HHHHHHHcCCCEEECCCC------CHHHHHHHHHcCCcccCCcC--CHHHHH
Confidence            46778877764 777777755 34444 467889999999998865      23689999999988766554  454444


Q ss_pred             HHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661           91 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus        91 ~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      .-+-...|.|=+   .|...   +.  -.+-++.++..++    ++++...|||+++|++++.++|+..+.+||.+|+.+
T Consensus       116 ~A~~~G~~~vK~---FPA~~---~G--G~~~ik~l~~p~p----~~~~~ptGGV~~~N~~~~l~ag~~~vg~Gs~L~~~~  183 (196)
T PF01081_consen  116 QALEAGADIVKL---FPAGA---LG--GPSYIKALRGPFP----DLPFMPTGGVNPDNLAEYLKAGAVAVGGGSWLFPKD  183 (196)
T ss_dssp             HHHHTT-SEEEE---TTTTT---TT--HHHHHHHHHTTTT----T-EEEEBSS--TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred             HHHHCCCCEEEE---ecchh---cC--cHHHHHHHhccCC----CCeEEEcCCCCHHHHHHHHhCCCEEEEECchhcCHH
Confidence            444335777754   56421   11  1233566666554    478899999999999999999999999999999854

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=98.51  E-value=3.5e-06  Score=67.56  Aligned_cols=143  Identities=14%  Similarity=0.152  Sum_probs=92.4

Q ss_pred             CCCcEEEEEeecChHHHHH---HHHHcCCCEEEEcccCC---------------CcchHHHHHHHHHHh-CCcEEEEEcC
Q 029661           23 TDLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNP   83 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~i~---~~~~~Gad~v~vh~e~~---------------~~~~~~~~i~~i~~~-g~~~g~~i~p   83 (190)
                      .+.|+.+.+...+|+.|.+   .+.++|+|.|-+|.-+.               ..+-+.++++++++. +..+.+-++.
T Consensus        53 ~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~  132 (231)
T cd02801          53 EERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL  132 (231)
T ss_pred             cCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee
Confidence            5689999999999987644   46778999999985320               122355777788764 3344444443


Q ss_pred             C--CC--H-HHHHHhhc-ccceEEEEeeecCCCCc-ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHc
Q 029661           84 A--TS--L-SAIECVLD-VVDLVLIMSVNPGFGGQ-SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA  155 (190)
Q Consensus        84 ~--t~--~-~~~~~~~~-~~d~i~~m~v~pG~~gq-~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~a  155 (190)
                      .  .+  . +.++.+.+ .+|+|.+.+.   ...| ...+..++.++++++.     .+++|.++|||+ ++++.++.+.
T Consensus       133 ~~~~~~~~~~~~~~l~~~Gvd~i~v~~~---~~~~~~~~~~~~~~~~~i~~~-----~~ipvi~~Ggi~~~~d~~~~l~~  204 (231)
T cd02801         133 GWDDEEETLELAKALEDAGASALTVHGR---TREQRYSGPADWDYIAEIKEA-----VSIPVIANGDIFSLEDALRCLEQ  204 (231)
T ss_pred             ccCCchHHHHHHHHHHHhCCCEEEECCC---CHHHcCCCCCCHHHHHHHHhC-----CCCeEEEeCCCCCHHHHHHHHHh
Confidence            2  22  2 22222222 2678765333   2222 1223346666666653     357899999996 8999999998


Q ss_pred             -CCCEEEEcccccCCCCHH
Q 029661          156 -GANALVAGSAVFGAKDYA  173 (190)
Q Consensus       156 -Gad~~VvGsaI~~~~dp~  173 (190)
                       |||.+.+|++++..++.-
T Consensus       205 ~gad~V~igr~~l~~P~~~  223 (231)
T cd02801         205 TGVDGVMIGRGALGNPWLF  223 (231)
T ss_pred             cCCCEEEEcHHhHhCCHHH
Confidence             899999999999866443

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed

Probab=98.50  E-value=9.6e-07  Score=73.30  Aligned_cols=155  Identities=15%  Similarity=0.086  Sum_probs=97.9

Q ss_pred             CCCHH-------HHHHhccCCCCcEEEEEeecCh----HHHHHHHH--HcCCCEEEEcccCCCcchHHHHHHHHHHhCCc
Q 029661           10 TIGPL-------VVDALRPVTDLPLDVHLMIVEP----EQRVPDFI--KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK   76 (190)
Q Consensus        10 ~~G~~-------~v~~i~~~~~~~i~~hlmv~dp----~~~i~~~~--~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~   76 (190)
                      .+|++       +++++|+. ++++.+|+|..|.    ..|.+.++  +.|+|.+|+|+-.+ .+.+..+++.++++|+.
T Consensus        66 ~~G~~G~~~l~~~i~~l~~~-g~~VilD~K~~DI~nTv~~ya~a~~~~~~g~DavTVhp~~G-~d~l~~~~~~~~~~~k~  143 (278)
T PRK00125         66 AHGAEGLAQLERTIAYLREA-GVLVIADAKRGDIGSTAEAYAKAAFESPLEADAVTVSPYMG-FDSLEPYLEYAEEHGKG  143 (278)
T ss_pred             hcCchhhhHHHHHHHHHHHC-CCcEEEEeecCChHHHHHHHHHHHhcCccCCcEEEECCcCC-HHHHHHHHHHHHhcCCE
Confidence            45777       78888874 7889999999996    35777778  69999999998764 67788899988888887


Q ss_pred             EEEEEcCCCCH-HHHHHhhc-----ccceEEE---Eee-----ecCCCCcccchhh-HHHHHHHHHHHhhcCCCCeEEEe
Q 029661           77 AGVVLNPATSL-SAIECVLD-----VVDLVLI---MSV-----NPGFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVD  141 (190)
Q Consensus        77 ~g~~i~p~t~~-~~~~~~~~-----~~d~i~~---m~v-----~pG~~gq~~~~~~-~~ki~~~~~~~~~~~~~~~i~vd  141 (190)
                      +++.+-++.|- ..++.+..     ..+.|.-   +..     .+|..|-. ...+ .+.++++|+..++    ++ -+.
T Consensus       144 vfVlvlTSnp~s~~lq~~~~~~~~~l~~~V~~~a~~~~~~~~~~~g~~G~V-VgaT~p~e~~~iR~~~~~----~~-iL~  217 (278)
T PRK00125        144 VFVLCRTSNPGGSDLQFLRTADGRPLYQHVADLAAALNNLGNCGYGSIGLV-VGATFPPELAAVRKILGG----MP-LLI  217 (278)
T ss_pred             EEEEEeCCCCCHHHHHhhhccCCCcHHHHHHHHHHHHhccccCCCCCCEEE-ECCCCHHHHHHHHHhCCC----Ce-EEe
Confidence            77666555554 34433210     1111110   011     14444411 1222 4556777776542    33 488


Q ss_pred             CCCCcc--cHHHHHHcCCC----EEE-EcccccCCCCH
Q 029661          142 GGVGPK--NAYKVIEAGAN----ALV-AGSAVFGAKDY  172 (190)
Q Consensus       142 GGI~~e--~~~~~~~aGad----~~V-vGsaI~~~~dp  172 (190)
                      .||.++  ++.+++++|++    ++| ++++|..+.+.
T Consensus       218 PGigaQGg~~~~~~~~~~~~~~~~l~~~SR~il~a~~~  255 (278)
T PRK00125        218 PGIGAQGGDAEATVRAGGAAGNGGIPNSSRAILYAGPG  255 (278)
T ss_pred             CCcCCCCcCHHHHHHHhhhcCCCEEeecCHHHHcCCCc
Confidence            999964  57777777665    333 34577766444

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=98.49  E-value=4.9e-06  Score=66.63  Aligned_cols=130  Identities=22%  Similarity=0.302  Sum_probs=81.3

Q ss_pred             EEEEeecChH------HHHHHHHHcCCCEEEEcccCCC-cchHHHHHHHHH-HhCCcEEEEEcCCCCHHHHHHhhcccce
Q 029661           28 DVHLMIVEPE------QRVPDFIKAGADIVSVHCEQSS-TIHLHRTLNQIK-DLGAKAGVVLNPATSLSAIECVLDVVDL   99 (190)
Q Consensus        28 ~~hlmv~dp~------~~i~~~~~~Gad~v~vh~e~~~-~~~~~~~i~~i~-~~g~~~g~~i~p~t~~~~~~~~~~~~d~   99 (190)
                      -.|+-.-||.      +..+.++++|.|.|.+....+- .+...++++++| +.+..+.+.-+..+.++      +.+|.
T Consensus        16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is------~~aDa   89 (240)
T COG1646          16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGIS------PYADA   89 (240)
T ss_pred             ceEEEEeCcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccC------ccCCe
Confidence            3566556664      4677899999999999876532 245788999999 56666655543222221      13344


Q ss_pred             EEEEee-----------------------------------ecCCC-C----ccc-------------------------
Q 029661          100 VLIMSV-----------------------------------NPGFG-G----QSF-------------------------  114 (190)
Q Consensus       100 i~~m~v-----------------------------------~pG~~-g----q~~-------------------------  114 (190)
                      +++|++                                   +||.. +    -+.                         
T Consensus        90 vff~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~Y  169 (240)
T COG1646          90 VFFPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVY  169 (240)
T ss_pred             EEEEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEE
Confidence            443333                                   33321 0    010                         


Q ss_pred             --------chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCC
Q 029661          115 --------IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       115 --------~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                              .|...+.+++..+.       .++-+.|||+ +|+++++.++|||.+|+|+.+.++.
T Consensus       170 lEagsga~~Pv~~e~v~~v~~~-------~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~  227 (240)
T COG1646         170 LEAGSGAGDPVPVEMVSRVLSD-------TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP  227 (240)
T ss_pred             EEecCCCCCCcCHHHHHHhhcc-------ceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence                    12222333322221       2677999999 7999999999999999999998854

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.48  E-value=1.1e-06  Score=73.16  Aligned_cols=94  Identities=12%  Similarity=0.234  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCe
Q 029661           62 HLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW  137 (190)
Q Consensus        62 ~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~  137 (190)
                      .+.+.++.+|+.   +.++++-+.   ..+.+.+.++ .+|+|++   .      .|.++.+++   +..++++.+.+.+
T Consensus       181 ~i~~av~~~r~~~~~~~~I~VEv~---tleea~eA~~~GaD~I~L---D------n~~~e~l~~---av~~~~~~~~~i~  245 (288)
T PRK07428        181 GIGEAITRIRQRIPYPLTIEVETE---TLEQVQEALEYGADIIML---D------NMPVDLMQQ---AVQLIRQQNPRVK  245 (288)
T ss_pred             CHHHHHHHHHHhCCCCCEEEEECC---CHHHHHHHHHcCCCEEEE---C------CCCHHHHHH---HHHHHHhcCCCeE
Confidence            477888888885   355555543   3444445444 5899976   1      344444444   3333333345678


Q ss_pred             EEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661          138 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       138 i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      +++.||||++|++++.+.|+|++++||.+++++
T Consensus       246 leAsGGIt~~ni~~ya~tGvD~Isvgsl~~sa~  278 (288)
T PRK07428        246 IEASGNITLETIRAVAETGVDYISSSAPITRSP  278 (288)
T ss_pred             EEEECCCCHHHHHHHHHcCCCEEEEchhhhCCC
Confidence            999999999999999999999999999998765

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=98.47  E-value=2.8e-06  Score=75.01  Aligned_cols=158  Identities=13%  Similarity=0.118  Sum_probs=111.5

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE   91 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~   91 (190)
                      +.+.++.+|+.+++|+...=.+-||... .++..+|||.|.+-....+.+.+.++++.+++.|+.+-+-++....+++..
T Consensus        98 s~~~l~~vr~~v~~PvLrKDFiid~~QI-~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al  176 (454)
T PRK09427         98 SFDFLPIVRAIVTQPILCKDFIIDPYQI-YLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAI  176 (454)
T ss_pred             CHHHHHHHHHhCCCCEEeccccCCHHHH-HHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHH
Confidence            5677888888888898875556676644 467889999999986653334699999999999999999887544444332


Q ss_pred             HhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCC
Q 029661           92 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus        92 ~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      ..  .++.|.+=..+.    ..|. -.++.-.++..++++   +..+..-+||+ ++++..+.. |+|.+.+|+++.+++
T Consensus       177 ~~--~a~iiGiNnRdL----~t~~-vd~~~~~~l~~~ip~---~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~~  245 (454)
T PRK09427        177 AL--GAKVIGINNRNL----RDLS-IDLNRTRELAPLIPA---DVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAED  245 (454)
T ss_pred             hC--CCCEEEEeCCCC----ccce-ECHHHHHHHHhhCCC---CcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCCC
Confidence            22  456654322221    1121 124444555666653   34455679998 789988765 799999999999999


Q ss_pred             CHHHHHHHHHH
Q 029661          171 DYAEAIKGIKT  181 (190)
Q Consensus       171 dp~~~~~~l~~  181 (190)
                      ||.+.+++|..
T Consensus       246 d~~~~~~~L~~  256 (454)
T PRK09427        246 DLELAVRKLIL  256 (454)
T ss_pred             CHHHHHHHHhc
Confidence            99999999854

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=98.44  E-value=1.6e-05  Score=67.73  Aligned_cols=147  Identities=18%  Similarity=0.192  Sum_probs=96.0

Q ss_pred             HhccCCCCcEEEEEeecChHHH---HHHHHHcCCCEEEEcccCCCc----------chHHHHHHHHHHh-CCcEEEEEcC
Q 029661           18 ALRPVTDLPLDVHLMIVEPEQR---VPDFIKAGADIVSVHCEQSST----------IHLHRTLNQIKDL-GAKAGVVLNP   83 (190)
Q Consensus        18 ~i~~~~~~~i~~hlmv~dp~~~---i~~~~~~Gad~v~vh~e~~~~----------~~~~~~i~~i~~~-g~~~g~~i~p   83 (190)
                      .+++..+.|+.+.+.-.+++.+   .+.+.++|+|++.+|..+.+.          +...++++.+++. .+.+.+=+.|
T Consensus        95 ~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p  174 (334)
T PRK07565         95 RAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSP  174 (334)
T ss_pred             HHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCC
Confidence            3444457899999988888654   455678899999997532000          1245677778775 5555666777


Q ss_pred             CC-CHHHHHHhhc--ccceEEEEeeec---------------CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC
Q 029661           84 AT-SLSAIECVLD--VVDLVLIMSVNP---------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG  145 (190)
Q Consensus        84 ~t-~~~~~~~~~~--~~d~i~~m~v~p---------------G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~  145 (190)
                      .. ....+.+.+.  .+|.|.+....+               |.+|....|..++-++++++..     +++|...|||+
T Consensus       175 ~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~-----~ipIig~GGI~  249 (334)
T PRK07565        175 YFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV-----GADLAATTGVH  249 (334)
T ss_pred             CchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc-----CCCEEEECCCC
Confidence            63 3444444333  378876543322               1223333345555555555432     47888999999


Q ss_pred             -cccHHHHHHcCCCEEEEcccccCC
Q 029661          146 -PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       146 -~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                       .+.+.+++.+|||.+=+||+++..
T Consensus       250 s~~Da~e~l~aGA~~V~v~t~~~~~  274 (334)
T PRK07565        250 DAEDVIKMLLAGADVVMIASALLRH  274 (334)
T ss_pred             CHHHHHHHHHcCCCceeeehHHhhh
Confidence             799999999999999999998873

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=98.43  E-value=8.5e-06  Score=68.22  Aligned_cols=160  Identities=10%  Similarity=0.172  Sum_probs=104.1

Q ss_pred             HHHHhccCC--CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcc----hHHHHHHHHHHhCCcEEEE---E----
Q 029661           15 VVDALRPVT--DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI----HLHRTLNQIKDLGAKAGVV---L----   81 (190)
Q Consensus        15 ~v~~i~~~~--~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~----~~~~~i~~i~~~g~~~g~~---i----   81 (190)
                      .++.+.+..  ++|+.+||==. ..+.++.+.+.|+++|-+=....+.+    .-.++.+.++++|..+-.-   +    
T Consensus        66 ~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~e  144 (293)
T PRK07315         66 LIENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEE  144 (293)
T ss_pred             HHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcC
Confidence            344454434  67999998555 34478889999999998854322211    1244555566666544111   1    


Q ss_pred             ------cCCCCHHHHHHhhc-ccceEEEE--eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC--CCcccHH
Q 029661           82 ------NPATSLSAIECVLD-VVDLVLIM--SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAY  150 (190)
Q Consensus        82 ------~p~t~~~~~~~~~~-~~d~i~~m--~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG--I~~e~~~  150 (190)
                            +.-|..+...++.. .+|++.+-  ++|--+.+. ..+-.+++|+++++...    ++++..-||  |+.++++
T Consensus       145 d~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~-~k~l~~e~L~~i~~~~~----~iPlVlhGGSGi~~e~~~  219 (293)
T PRK07315        145 DGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPEN-WEGLDLDHLEKLTEAVP----GFPIVLHGGSGIPDDQIQ  219 (293)
T ss_pred             ccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCCCC-CCcCCHHHHHHHHHhcc----CCCEEEECCCCCCHHHHH
Confidence                  11156666666553 48998765  564112121 11345777888777652    368899999  9999999


Q ss_pred             HHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661          151 KVIEAGANALVAGSAVFGAKDYAEAIKGIKTS  182 (190)
Q Consensus       151 ~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~  182 (190)
                      ++++.|++.+-++|.|..  ++.++++++.+.
T Consensus       220 ~~i~~Gi~KiNv~T~i~~--~~~~~~~~~~~~  249 (293)
T PRK07315        220 EAIKLGVAKVNVNTECQI--AFANATRKFARD  249 (293)
T ss_pred             HHHHcCCCEEEEccHHHH--HHHHHHHHHHHh
Confidence            999999999999999986  677777776543

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.43  E-value=1.5e-05  Score=68.69  Aligned_cols=130  Identities=22%  Similarity=0.310  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHcCCCEEEEcccC-----CCcc-hHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecC
Q 029661           36 PEQRVPDFIKAGADIVSVHCEQ-----SSTI-HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG  108 (190)
Q Consensus        36 p~~~i~~~~~~Gad~v~vh~e~-----~~~~-~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG  108 (190)
                      ..++++.+.++|+|.+++|.-.     .... ++..+.+.+++.++.+..  ..-.+.+..+++++ .+|.|.+ +..||
T Consensus       143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa--G~V~t~e~A~~l~~aGAD~V~V-G~G~G  219 (368)
T PRK08649        143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV--GGCVTYTTALHLMRTGAAGVLV-GIGPG  219 (368)
T ss_pred             HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE--eCCCCHHHHHHHHHcCCCEEEE-CCCCC
Confidence            4567888999999999999621     0011 467788888887766533  22334455555554 4899865 66666


Q ss_pred             C--CCc-cc---chhhHHHHHHHHH----HHhhc-CCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          109 F--GGQ-SF---IESQVKKISDLRR----MCLEK-GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       109 ~--~gq-~~---~~~~~~ki~~~~~----~~~~~-~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .  ..+ ..   .| .+..+.+..+    +..+. +.+++|.+||||+ ...+.+.+.+|||.+.+||.+...
T Consensus       220 s~~~t~~~~g~g~p-~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t  291 (368)
T PRK08649        220 AACTSRGVLGIGVP-MATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARA  291 (368)
T ss_pred             cCCCCcccCCCCcC-HHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhccc
Confidence            2  111 11   12 2333333322    22221 2357899999998 689999999999999999998764

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=98.41  E-value=1.4e-05  Score=65.17  Aligned_cols=154  Identities=8%  Similarity=0.022  Sum_probs=97.0

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC-------
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-------   84 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~-------   84 (190)
                      ..+.+++|.+.+..|+.+.==+.+.+ -++.+.+.||+.|++--++  .++++-+-+.++++|-++.+++...       
T Consensus        62 n~~~i~~i~~~~~~~v~vgGGIrs~e-~~~~~l~~Ga~~vvigT~a--~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~  138 (243)
T TIGR01919        62 NEMMLEEVVKLLVVVEELSGGRRDDS-SLRAALTGGRARVNGGTAA--LENPWWAAAVIRYGGDIVAVGLDVLEDGEWHT  138 (243)
T ss_pred             hHHHHHHHHHHCCCCEEEcCCCCCHH-HHHHHHHcCCCEEEECchh--hCCHHHHHHHHHHccccEEEEEEEecCCceEE
Confidence            35678888776555555433333333 4667888999999997664  4566666666677766654443321       


Q ss_pred             --------CC---HHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHH
Q 029661           85 --------TS---LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYK  151 (190)
Q Consensus        85 --------t~---~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~  151 (190)
                              |.   .+.++++.+. +..++++.+.--...+-+.   ++.++++++..     +.++.+.||++ .+++..
T Consensus       139 v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d---~~l~~~l~~~~-----~~pviasGGv~s~eDl~~  210 (243)
T TIGR01919       139 LGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPN---ELLLEVVAART-----DAIVAASGGSSLLDDLRA  210 (243)
T ss_pred             EECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcC---HHHHHHHHhhC-----CCCEEEECCcCCHHHHHH
Confidence                    22   2344444333 5778888776422222232   44455555543     36899999999 588887


Q ss_pred             HH---HcCCCEEEEcccccCCC-CHHHHH
Q 029661          152 VI---EAGANALVAGSAVFGAK-DYAEAI  176 (190)
Q Consensus       152 ~~---~aGad~~VvGsaI~~~~-dp~~~~  176 (190)
                      +.   +.|++.+++|++++... +.++++
T Consensus       211 l~~l~~~Gv~gvivg~Al~~g~i~~~~~~  239 (243)
T TIGR01919       211 IKYLDEGGVSVAIGGKLLYARFFTLEAAL  239 (243)
T ss_pred             HHhhccCCeeEEEEhHHHHcCCCCHHHHH
Confidence            65   45999999999999754 555543

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=98.41  E-value=1.6e-05  Score=68.57  Aligned_cols=132  Identities=19%  Similarity=0.240  Sum_probs=82.6

Q ss_pred             ChHHHHHHHHHcCCCEEEEcccC------CCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeec
Q 029661           35 EPEQRVPDFIKAGADIVSVHCEQ------SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNP  107 (190)
Q Consensus        35 dp~~~i~~~~~~Gad~v~vh~e~------~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~p  107 (190)
                      +..++.+.+.++|+|.+++|.-.      ....++..+.+.+++.++.+..  ..-.+.+...++++ .+|.|+. +..-
T Consensus       143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~--G~V~t~e~A~~~~~aGaDgV~~-G~gg  219 (369)
T TIGR01304       143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA--GGVNDYTTALHLMRTGAAGVIV-GPGG  219 (369)
T ss_pred             CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE--eCCCCHHHHHHHHHcCCCEEEE-CCCC
Confidence            45678889999999999999421      0122466777777878776643  22344555565554 5888872 2111


Q ss_pred             CCCCc-cc---ch--hhHHHHHHH-HHHHhhcC-CCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          108 GFGGQ-SF---IE--SQVKKISDL-RRMCLEKG-VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       108 G~~gq-~~---~~--~~~~ki~~~-~~~~~~~~-~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      +.... ..   .|  ..+..+... +++.++.+ ..++|-+||||+ .+.+.+++.+|||.+.+||++..+
T Consensus       220 ~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a  290 (369)
T TIGR01304       220 ANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARA  290 (369)
T ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhh
Confidence            11111 11   12  122233333 23343333 247899999999 689999999999999999998864

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.39  E-value=1.6e-05  Score=64.73  Aligned_cols=140  Identities=19%  Similarity=0.285  Sum_probs=90.6

Q ss_pred             HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCC--------HHHHH----Hhhcccce--
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS--------LSAIE----CVLDVVDL--   99 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~--------~~~~~----~~~~~~d~--   99 (190)
                      .+++.++|++++.+ |.|-     .+++.+..-+++++++|+.+.+.+. +|.        .+.+.    ..+...+-  
T Consensus        81 ~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvG-Etl~~reag~t~~v~~~Ql~~~l~~l~~~~  159 (251)
T COG0149          81 AEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVG-ETLEEREAGKTLEVLKRQLAAALAALSPEA  159 (251)
T ss_pred             HHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcC-CCHHHHhccChHHHHHHHHHHHHhhcCccc
Confidence            67899999999999 3321     1244567888999999999888776 233        12222    22222221  


Q ss_pred             EEEEeeec----CCCCcccchhhHH-HHHHHHHHHhhcC---CCCeEEEeCCCCcccHHHH-HHcCCCEEEEcccccCCC
Q 029661          100 VLIMSVNP----GFGGQSFIESQVK-KISDLRRMCLEKG---VNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFGAK  170 (190)
Q Consensus       100 i~~m~v~p----G~~gq~~~~~~~~-ki~~~~~~~~~~~---~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~~~~  170 (190)
                      =.+...+|    |++ .+-.++..+ ..+-+|....+..   .+++|..+|||+++|+.++ .+.++|++-+||+..+++
T Consensus       160 ~~vIAYEPvWAIGTG-~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~  238 (251)
T COG0149         160 NIVIAYEPVWAIGTG-KSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKAD  238 (251)
T ss_pred             CeEEEECCHHHhcCC-CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecch
Confidence            12234566    643 332222222 2334444443321   4689999999999888855 678999999999999999


Q ss_pred             CHHHHHHHHHH
Q 029661          171 DYAEAIKGIKT  181 (190)
Q Consensus       171 dp~~~~~~l~~  181 (190)
                      |+.+.++.+.+
T Consensus       239 ~f~~ii~~~~~  249 (251)
T COG0149         239 DFLAILEALAK  249 (251)
T ss_pred             hHHHHHHHHhh
Confidence            99988887754

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.38  E-value=3.7e-06  Score=69.66  Aligned_cols=95  Identities=17%  Similarity=0.232  Sum_probs=65.5

Q ss_pred             chHHHHHHHHHHhC---CcEEEEEcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCC
Q 029661           61 IHLHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP  136 (190)
Q Consensus        61 ~~~~~~i~~i~~~g---~~~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~  136 (190)
                      +++.+.++.+|+.-   .++.+-+.   ..+.+.+.++. +|.|++       +.  |.++.   ++++.++++....+.
T Consensus       166 g~i~~~v~~~k~~~p~~~~I~VEv~---tleea~~A~~~GaDiI~L-------Dn--~~~e~---l~~~v~~~~~~~~~~  230 (273)
T PRK05848        166 KDLKEFIQHARKNIPFTAKIEIECE---SLEEAKNAMNAGADIVMC-------DN--MSVEE---IKEVVAYRNANYPHV  230 (273)
T ss_pred             CcHHHHHHHHHHhCCCCceEEEEeC---CHHHHHHHHHcCCCEEEE-------CC--CCHHH---HHHHHHHhhccCCCe
Confidence            35778888888852   44444443   55556665554 898763       22  33444   444444444333457


Q ss_pred             eEEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661          137 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       137 ~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      .+.+.||||++|++++.+.|+|++++|+.+.+++
T Consensus       231 ~ieAsGgIt~~ni~~ya~~GvD~IsvG~l~~sa~  264 (273)
T PRK05848        231 LLEASGNITLENINAYAKSGVDAISSGSLIHQAT  264 (273)
T ss_pred             EEEEECCCCHHHHHHHHHcCCCEEEeChhhcCCC
Confidence            8999999999999999999999999999998764

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=98.38  E-value=3e-06  Score=68.49  Aligned_cols=145  Identities=17%  Similarity=0.195  Sum_probs=93.6

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEc--CC------
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLN--PA------   84 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~--p~------   84 (190)
                      +.+++|.+.+..|+.+.==+.+.+ -++.+.++||+.|++.-++  .++++-+-+.++++|. ++.+++.  ..      
T Consensus        63 ~~i~~i~~~~~~~i~vgGGIrs~e-d~~~ll~~Ga~~Vvigt~~--~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~  139 (229)
T PF00977_consen   63 ELIKEIAKETGIPIQVGGGIRSIE-DAERLLDAGADRVVIGTEA--LEDPELLEELAERYGSQRIVVSLDARDGYKVATN  139 (229)
T ss_dssp             HHHHHHHHHSSSEEEEESSE-SHH-HHHHHHHTT-SEEEESHHH--HHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEET
T ss_pred             HHHHHHHhcCCccEEEeCccCcHH-HHHHHHHhCCCEEEeChHH--hhchhHHHHHHHHcCcccEEEEEEeeeceEEEec
Confidence            567777776667776655555544 4567889999999999775  4455556666677776 5544432  22      


Q ss_pred             --------CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661           85 --------TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE  154 (190)
Q Consensus        85 --------t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~  154 (190)
                              ++.+.++++.+. +..++++.+.--..++-+.   ++.++++++..     +.++.+.|||+ .+++..+.+
T Consensus       140 gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d---~~~~~~l~~~~-----~~~viasGGv~~~~Dl~~l~~  211 (229)
T PF00977_consen  140 GWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPD---LELLKQLAEAV-----NIPVIASGGVRSLEDLRELKK  211 (229)
T ss_dssp             TTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS-----HHHHHHHHHHH-----SSEEEEESS--SHHHHHHHHH
T ss_pred             CccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCC---HHHHHHHHHHc-----CCCEEEecCCCCHHHHHHHHH
Confidence                    123444444433 6778888876422333332   35566666654     36899999996 799999999


Q ss_pred             cCCCEEEEcccccCC
Q 029661          155 AGANALVAGSAVFGA  169 (190)
Q Consensus       155 aGad~~VvGsaI~~~  169 (190)
                      .|++.+++|++++..
T Consensus       212 ~G~~gvivg~al~~g  226 (229)
T PF00977_consen  212 AGIDGVIVGSALHEG  226 (229)
T ss_dssp             TTECEEEESHHHHTT
T ss_pred             CCCcEEEEehHhhCC
Confidence            999999999999753

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.38  E-value=4.5e-06  Score=69.29  Aligned_cols=91  Identities=12%  Similarity=0.200  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCe
Q 029661           62 HLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW  137 (190)
Q Consensus        62 ~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~  137 (190)
                      .+.+.++.+|+.   ++++|+.++   ..+.+++.. ..+|||.+   .      .+.+   +.++++++..+   ...+
T Consensus       173 ~~~~~v~~aR~~~~~~~~Igvsv~---tleea~~A~~~gaDyI~l---D------~~~~---e~l~~~~~~~~---~~i~  234 (277)
T PRK08072        173 SITKAVTSVREKLGHMVKIEVETE---TEEQVREAVAAGADIIMF---D------NRTP---DEIREFVKLVP---SAIV  234 (277)
T ss_pred             CHHHHHHHHHHhCCCCCEEEEEeC---CHHHHHHHHHcCCCEEEE---C------CCCH---HHHHHHHHhcC---CCce
Confidence            477788888886   456777775   344444444 45899976   1      2333   44555555543   2467


Q ss_pred             EEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661          138 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       138 i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      +++.||||++|++++.++|+|++.+|+-..+++
T Consensus       235 i~AiGGIt~~ni~~~a~~Gvd~IAvg~l~~sa~  267 (277)
T PRK08072        235 TEASGGITLENLPAYGGTGVDYISLGFLTHSVK  267 (277)
T ss_pred             EEEECCCCHHHHHHHHHcCCCEEEEChhhcCCc
Confidence            889999999999999999999999998766553

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=98.38  E-value=3.1e-05  Score=65.79  Aligned_cols=143  Identities=20%  Similarity=0.221  Sum_probs=94.7

Q ss_pred             CCCCcEEEEEeecChHHH---HHHHHHcCCCEEEEcccCCC-c---------chHHHHHHHHHHh-CCcEEEEEcCC-CC
Q 029661           22 VTDLPLDVHLMIVEPEQR---VPDFIKAGADIVSVHCEQSS-T---------IHLHRTLNQIKDL-GAKAGVVLNPA-TS   86 (190)
Q Consensus        22 ~~~~~i~~hlmv~dp~~~---i~~~~~~Gad~v~vh~e~~~-~---------~~~~~~i~~i~~~-g~~~g~~i~p~-t~   86 (190)
                      ..+.|+.+.++-.+++.|   .+.+.++|+|++-+|..+.+ .         +.+.++++.+++. .+.+.+=+.|. +.
T Consensus        97 ~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~  176 (325)
T cd04739          97 AVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSA  176 (325)
T ss_pred             ccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccC
Confidence            357899999877778654   55567889999999865310 0         1235677888775 55556667776 33


Q ss_pred             HHHHHHhhc--ccceEEEEeee---------------cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-ccc
Q 029661           87 LSAIECVLD--VVDLVLIMSVN---------------PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKN  148 (190)
Q Consensus        87 ~~~~~~~~~--~~d~i~~m~v~---------------pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~  148 (190)
                      +..+.+.+.  .+|.|.+....               .|.+|....+..++-++++++..     +++|...|||+ .+.
T Consensus       177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~-----~ipIig~GGI~s~~D  251 (325)
T cd04739         177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV-----KASLAASGGVHDAED  251 (325)
T ss_pred             HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc-----CCCEEEECCCCCHHH
Confidence            433333332  37777654322               12234344455566566655432     47899999999 789


Q ss_pred             HHHHHHcCCCEEEEcccccCC
Q 029661          149 AYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       149 ~~~~~~aGad~~VvGsaI~~~  169 (190)
                      +.+++.+|||.+=+||+++..
T Consensus       252 a~e~l~aGA~~Vqv~ta~~~~  272 (325)
T cd04739         252 VVKYLLAGADVVMTTSALLRH  272 (325)
T ss_pred             HHHHHHcCCCeeEEehhhhhc
Confidence            999999999999999998863

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=98.37  E-value=1.9e-05  Score=65.81  Aligned_cols=147  Identities=16%  Similarity=0.195  Sum_probs=98.9

Q ss_pred             HHHHhccCCC-CcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcc-h---HHHHHHHHHHhCCcEEEEEcC------
Q 029661           15 VVDALRPVTD-LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI-H---LHRTLNQIKDLGAKAGVVLNP------   83 (190)
Q Consensus        15 ~v~~i~~~~~-~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~-~---~~~~i~~i~~~g~~~g~~i~p------   83 (190)
                      .++.+.+..+ +|+.+||==....+.++.+.+.|+++|.+=....+.+ +   ..++.+.++++|..+-.-+..      
T Consensus        64 ~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed  143 (282)
T TIGR01859        64 MVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIED  143 (282)
T ss_pred             HHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccc
Confidence            3444444456 8999998323345678889999999988743321111 1   345566667777765432221      


Q ss_pred             --------CCCHHHHHHhhc--ccceEE--EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC--CCCcccH
Q 029661           84 --------ATSLSAIECVLD--VVDLVL--IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG--GVGPKNA  149 (190)
Q Consensus        84 --------~t~~~~~~~~~~--~~d~i~--~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG--GI~~e~~  149 (190)
                              -|+.+...++..  .+|++.  +-++++-+.+.  .+-.+++|+++++..     ++++..-|  ||+.+++
T Consensus       144 ~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~--~~l~~e~L~~i~~~~-----~iPlv~hGgSGi~~e~i  216 (282)
T TIGR01859       144 GVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGE--PGLDFERLKEIKELT-----NIPLVLHGASGIPEEQI  216 (282)
T ss_pred             cccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCC--CccCHHHHHHHHHHh-----CCCEEEECCCCCCHHHH
Confidence                    356666777665  589987  34455433331  233477777777765     37899999  9999999


Q ss_pred             HHHHHcCCCEEEEcccccC
Q 029661          150 YKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       150 ~~~~~aGad~~VvGsaI~~  168 (190)
                      ++++++|++.+-++|.+..
T Consensus       217 ~~~i~~Gi~kiNv~T~l~~  235 (282)
T TIGR01859       217 KKAIKLGIAKINIDTDCRI  235 (282)
T ss_pred             HHHHHcCCCEEEECcHHHH
Confidence            9999999999999998864

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.37  E-value=2.2e-05  Score=64.03  Aligned_cols=153  Identities=10%  Similarity=0.070  Sum_probs=96.0

Q ss_pred             HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC---------
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP---------   83 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p---------   83 (190)
                      .+.+++|.+.+ .|+.+.==+.+. +-++.+.++||+.|++--++  .++++ .++.+.++|-++.+++..         
T Consensus        63 ~~~i~~i~~~~-~~v~vGGGIrs~-e~~~~~l~~Ga~rvvigT~a--~~~p~-~l~~~~~~~~~ivvslD~k~g~v~~~g  137 (241)
T PRK14114         63 LPVLEKLSEFA-EHIQIGGGIRSL-DYAEKLRKLGYRRQIVSSKV--LEDPS-FLKFLKEIDVEPVFSLDTRGGKVAFKG  137 (241)
T ss_pred             HHHHHHHHhhc-CcEEEecCCCCH-HHHHHHHHCCCCEEEECchh--hCCHH-HHHHHHHhCCCEEEEEEccCCEEeeCC
Confidence            56778887654 344332222222 34667888999999998765  44554 455556677666554432         


Q ss_pred             ---C---CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHc
Q 029661           84 ---A---TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA  155 (190)
Q Consensus        84 ---~---t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~a  155 (190)
                         .   ++.+.++++.+. +..++++++.--...+-+.   ++.++++++..     +.++.+.||++ .+++..+.+.
T Consensus       138 w~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d---~el~~~l~~~~-----~~pviasGGv~s~~Dl~~l~~~  209 (241)
T PRK14114        138 WLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHD---FSLTRKIAIEA-----EVKVFAAGGISSENSLKTAQRV  209 (241)
T ss_pred             CeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcC---HHHHHHHHHHC-----CCCEEEECCCCCHHHHHHHHhc
Confidence               1   224445555443 6788888776422223233   44455555543     36899999999 6999999886


Q ss_pred             -----C-CCEEEEcccccCCC-CHHHHHHH
Q 029661          156 -----G-ANALVAGSAVFGAK-DYAEAIKG  178 (190)
Q Consensus       156 -----G-ad~~VvGsaI~~~~-dp~~~~~~  178 (190)
                           | ++.+++|||++... +++++.+.
T Consensus       210 ~~~~~g~v~gvivg~Al~~g~i~~~e~~~~  239 (241)
T PRK14114        210 HRETNGLLKGVIVGRAFLEGILTVEVMKRY  239 (241)
T ss_pred             ccccCCcEEEEEEehHHHCCCCCHHHHHHh
Confidence                 6 99999999999764 55555443

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=98.35  E-value=2.3e-05  Score=66.64  Aligned_cols=139  Identities=17%  Similarity=0.237  Sum_probs=88.8

Q ss_pred             HHHHhccCCCCcEEEEEeecCh--HHH------------HHHHHHcCCC--------------EEEEcccCCCcchHHHH
Q 029661           15 VVDALRPVTDLPLDVHLMIVEP--EQR------------VPDFIKAGAD--------------IVSVHCEQSSTIHLHRT   66 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp--~~~------------i~~~~~~Gad--------------~v~vh~e~~~~~~~~~~   66 (190)
                      .++++|+.++.|+-+.+++..+  ...            .+...+.|..              .|+++.-.    ...+.
T Consensus        53 ~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~----p~~~~  128 (330)
T PF03060_consen   53 EIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGL----PPPEV  128 (330)
T ss_dssp             HHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSS----C-HHH
T ss_pred             HHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeeccc----chHHH
Confidence            4556677788899999998643  222            3344555554              99998753    13678


Q ss_pred             HHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCccc-c-hhhHHHHHHHHHHHhhcCCCCeEEEeCC
Q 029661           67 LNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-I-ESQVKKISDLRRMCLEKGVNPWIEVDGG  143 (190)
Q Consensus        67 i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~-~-~~~~~ki~~~~~~~~~~~~~~~i~vdGG  143 (190)
                      ++.+++.|+++...+   ++++..+..++ .+|.|.+.+.+.|.  ..- . ..++..+.++++..+     +++.+.||
T Consensus       129 i~~l~~~gi~v~~~v---~s~~~A~~a~~~G~D~iv~qG~eAGG--H~g~~~~~~~~L~~~v~~~~~-----iPViaAGG  198 (330)
T PF03060_consen  129 IERLHAAGIKVIPQV---TSVREARKAAKAGADAIVAQGPEAGG--HRGFEVGSTFSLLPQVRDAVD-----IPVIAAGG  198 (330)
T ss_dssp             HHHHHHTT-EEEEEE---SSHHHHHHHHHTT-SEEEEE-TTSSE--E---SSG-HHHHHHHHHHH-S-----S-EEEESS
T ss_pred             HHHHHHcCCcccccc---CCHHHHHHhhhcCCCEEEEeccccCC--CCCccccceeeHHHHHhhhcC-----CcEEEecC
Confidence            999999999877655   36666666554 49999988777653  222 1 246666777777653     78999999


Q ss_pred             CC-cccHHHHHHcCCCEEEEccccc
Q 029661          144 VG-PKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus       144 I~-~e~~~~~~~aGad~~VvGsaI~  167 (190)
                      |. .+.+..+...|||.+.+||...
T Consensus       199 I~dg~~iaaal~lGA~gV~~GTrFl  223 (330)
T PF03060_consen  199 IADGRGIAAALALGADGVQMGTRFL  223 (330)
T ss_dssp             --SHHHHHHHHHCT-SEEEESHHHH
T ss_pred             cCCHHHHHHHHHcCCCEeecCCeEE
Confidence            97 5788999999999999998754

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=98.35  E-value=2.6e-06  Score=65.83  Aligned_cols=96  Identities=16%  Similarity=0.246  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHhC-CcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEE
Q 029661           62 HLHRTLNQIKDLG-AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE  139 (190)
Q Consensus        62 ~~~~~i~~i~~~g-~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~  139 (190)
                      .+.+.++.+|+.- ...-+.+...+ .+.+++.++ .+|.|++=.         |.|+   .++++.+.+...+.++.|+
T Consensus        65 ~i~~av~~~~~~~~~~~~I~VEv~~-~ee~~ea~~~g~d~I~lD~---------~~~~---~~~~~v~~l~~~~~~v~ie  131 (169)
T PF01729_consen   65 GIEEAVKAARQAAPEKKKIEVEVEN-LEEAEEALEAGADIIMLDN---------MSPE---DLKEAVEELRELNPRVKIE  131 (169)
T ss_dssp             SHHHHHHHHHHHSTTTSEEEEEESS-HHHHHHHHHTT-SEEEEES----------CHH---HHHHHHHHHHHHTTTSEEE
T ss_pred             CHHHHHHHHHHhCCCCceEEEEcCC-HHHHHHHHHhCCCEEEecC---------cCHH---HHHHHHHHHhhcCCcEEEE
Confidence            4778888888852 22114444444 455556554 478887611         2333   3444444444445568999


Q ss_pred             EeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661          140 VDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       140 vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      +.||||++|+.++.+.|+|++.+||.+.+++
T Consensus       132 ~SGGI~~~ni~~ya~~gvD~isvg~~~~~a~  162 (169)
T PF01729_consen  132 ASGGITLENIAEYAKTGVDVISVGSLTHSAP  162 (169)
T ss_dssp             EESSSSTTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred             EECCCCHHHHHHHHhcCCCEEEcChhhcCCc
Confidence            9999999999999999999999999888764

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=98.34  E-value=2.5e-05  Score=63.98  Aligned_cols=146  Identities=21%  Similarity=0.291  Sum_probs=96.1

Q ss_pred             CCHHHHH-------HhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC----C----cchHHHHHHHHHHhCC
Q 029661           11 IGPLVVD-------ALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS----S----TIHLHRTLNQIKDLGA   75 (190)
Q Consensus        11 ~G~~~v~-------~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~----~----~~~~~~~i~~i~~~g~   75 (190)
                      .+|+++.       ++++..++|+-+.++-+|+..-+..+..+|+|.|=+-...+    +    .....+++++=++.|.
T Consensus        60 ~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a  139 (254)
T PF03437_consen   60 VGPETVAAMARIAREVRREVSVPVGVNVLRNDPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGA  139 (254)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCC
Confidence            3666655       45665688999999998998878888889999887532111    0    1234566666666666


Q ss_pred             cEEE--EEcCC-------CCHHH-HHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC
Q 029661           76 KAGV--VLNPA-------TSLSA-IECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG  143 (190)
Q Consensus        76 ~~g~--~i~p~-------t~~~~-~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG  143 (190)
                      ++-+  .+++.       .+++. .+..+.  .+|-+.+-+..   +|++   ..+++++++|+..+     .++-+.+|
T Consensus       140 ~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~---TG~~---~~~~~l~~vr~~~~-----~PVlvGSG  208 (254)
T PF03437_consen  140 DVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKA---TGEP---PDPEKLKRVREAVP-----VPVLVGSG  208 (254)
T ss_pred             CeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcc---cCCC---CCHHHHHHHHhcCC-----CCEEEecC
Confidence            6433  34432       22332 222212  37888764333   2433   35677777777653     68889999


Q ss_pred             CCcccHHHHHHcCCCEEEEcccccC
Q 029661          144 VGPKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       144 I~~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      +|++|+.++.+. ||++||||++=+
T Consensus       209 vt~~Ni~~~l~~-ADG~IVGS~~K~  232 (254)
T PF03437_consen  209 VTPENIAEYLSY-ADGAIVGSYFKK  232 (254)
T ss_pred             CCHHHHHHHHHh-CCEEEEeeeeee
Confidence            999999998875 999999999653

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.34  E-value=2.3e-05  Score=63.04  Aligned_cols=135  Identities=17%  Similarity=0.081  Sum_probs=92.4

Q ss_pred             CHHHHHHhcc-----CCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC
Q 029661           12 GPLVVDALRP-----VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS   86 (190)
Q Consensus        12 G~~~v~~i~~-----~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~   86 (190)
                      ..+.++.|++     .+++.+-+-. |.|++. ++.+.++||+.+.-+...      .++++.++++|+...--+.  ||
T Consensus        53 a~~~i~~l~~~~~~~~p~~~vGaGT-Vl~~e~-a~~a~~aGA~FiVsP~~~------~~v~~~~~~~~i~~iPG~~--Tp  122 (222)
T PRK07114         53 AHEVFAELVKYAAKELPGMILGVGS-IVDAAT-AALYIQLGANFIVTPLFN------PDIAKVCNRRKVPYSPGCG--SL  122 (222)
T ss_pred             HHHHHHHHHHHHHhhCCCeEEeeEe-CcCHHH-HHHHHHcCCCEEECCCCC------HHHHHHHHHcCCCEeCCCC--CH
Confidence            5567777752     3445566654 345553 577899999998877652      3578999998877544332  45


Q ss_pred             HHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc--ccHHHHHHcCCCEEEEcc
Q 029661           87 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP--KNAYKVIEAGANALVAGS  164 (190)
Q Consensus        87 ~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~--e~~~~~~~aGad~~VvGs  164 (190)
                      -|...-+-..+|.|=+   .|+..+   .   ..-++.++.-++    +.++...|||++  +|++++.++|+..+.+||
T Consensus       123 sEi~~A~~~Ga~~vKl---FPA~~~---G---~~~ikal~~p~p----~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs  189 (222)
T PRK07114        123 SEIGYAEELGCEIVKL---FPGSVY---G---PGFVKAIKGPMP----WTKIMPTGGVEPTEENLKKWFGAGVTCVGMGS  189 (222)
T ss_pred             HHHHHHHHCCCCEEEE---Cccccc---C---HHHHHHHhccCC----CCeEEeCCCCCcchhcHHHHHhCCCEEEEECh
Confidence            5545554446777754   563211   1   333566666554    478999999998  899999999999999999


Q ss_pred             cccCC
Q 029661          165 AVFGA  169 (190)
Q Consensus       165 aI~~~  169 (190)
                      .+|..
T Consensus       190 ~L~~~  194 (222)
T PRK07114        190 KLIPK  194 (222)
T ss_pred             hhcCc
Confidence            99964

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=98.33  E-value=3.6e-05  Score=64.40  Aligned_cols=144  Identities=19%  Similarity=0.187  Sum_probs=92.9

Q ss_pred             CCCcEEEEEeecChHHHHHH---HHHc--CCCEEEEcccCC-----------CcchHHHHHHHHHHh-CCcEEEEEcCCC
Q 029661           23 TDLPLDVHLMIVEPEQRVPD---FIKA--GADIVSVHCEQS-----------STIHLHRTLNQIKDL-GAKAGVVLNPAT   85 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~i~~---~~~~--Gad~v~vh~e~~-----------~~~~~~~~i~~i~~~-g~~~g~~i~p~t   85 (190)
                      .+.|+.+.++-.+|+.+.+.   +.++  ++|.+-+-.-+.           ..+.+.++++++|+. ++.+.+=++++.
T Consensus        89 ~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~  168 (300)
T TIGR01037        89 FPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNV  168 (300)
T ss_pred             CCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence            35689999999999877543   4444  389998843220           123467788888875 677777677653


Q ss_pred             C-HHHHHHhhc--ccceEEEEeeecC------------------CCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC
Q 029661           86 S-LSAIECVLD--VVDLVLIMSVNPG------------------FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV  144 (190)
Q Consensus        86 ~-~~~~~~~~~--~~d~i~~m~v~pG------------------~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI  144 (190)
                      + ...+.+.+.  .+|.|.+.....|                  .+|....|..++.+.++++..     +++|...|||
T Consensus       169 ~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-----~ipvi~~GGI  243 (300)
T TIGR01037       169 TDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV-----DIPIIGVGGI  243 (300)
T ss_pred             hhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC-----CCCEEEECCC
Confidence            2 233333332  3788876422111                  122222233345566655532     4788899999


Q ss_pred             C-cccHHHHHHcCCCEEEEcccccCCCC
Q 029661          145 G-PKNAYKVIEAGANALVAGSAVFGAKD  171 (190)
Q Consensus       145 ~-~e~~~~~~~aGad~~VvGsaI~~~~d  171 (190)
                      + ++++.+++.+|||.+-+||+++..++
T Consensus       244 ~s~~da~~~l~~GAd~V~igr~~l~~p~  271 (300)
T TIGR01037       244 TSFEDALEFLMAGASAVQVGTAVYYRGF  271 (300)
T ss_pred             CCHHHHHHHHHcCCCceeecHHHhcCch
Confidence            6 89999999999999999999887553

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=98.32  E-value=3e-05  Score=65.85  Aligned_cols=151  Identities=23%  Similarity=0.235  Sum_probs=100.7

Q ss_pred             HHHHhccC--CCCcEEEEEeecC-------hHHHHHHHHHcC--CCEEEEcccCC---------CcchHHHHHHHHHHh-
Q 029661           15 VVDALRPV--TDLPLDVHLMIVE-------PEQRVPDFIKAG--ADIVSVHCEQS---------STIHLHRTLNQIKDL-   73 (190)
Q Consensus        15 ~v~~i~~~--~~~~i~~hlmv~d-------p~~~i~~~~~~G--ad~v~vh~e~~---------~~~~~~~~i~~i~~~-   73 (190)
                      +++++++.  .+.|+.+.+.-.+       +.+|.+.+.+++  ||++-+-..+.         ..+.+.++++++|+. 
T Consensus       117 ~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~  196 (327)
T cd04738         117 VAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEER  196 (327)
T ss_pred             HHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHH
Confidence            45666653  4689999886655       466776655544  89988843221         013466777887774 


Q ss_pred             C-----CcEEEEEcCCCCHHHHHHhh---c--ccceEEEEeeec---------------CCCCcccchhhHHHHHHHHHH
Q 029661           74 G-----AKAGVVLNPATSLSAIECVL---D--VVDLVLIMSVNP---------------GFGGQSFIESQVKKISDLRRM  128 (190)
Q Consensus        74 g-----~~~g~~i~p~t~~~~~~~~~---~--~~d~i~~m~v~p---------------G~~gq~~~~~~~~ki~~~~~~  128 (190)
                      +     +.+.+=++|..+.+.+.++.   .  .+|.|.+....+               |++|....+..++.++++++.
T Consensus       197 ~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~  276 (327)
T cd04738         197 NKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKL  276 (327)
T ss_pred             hhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHH
Confidence            2     66777677776543333332   2  378887654321               344544445667888888876


Q ss_pred             HhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661          129 CLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       129 ~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      .+   .+++|...|||+ .+.+.+++.+|||.+-+||+++.
T Consensus       277 ~~---~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~  314 (327)
T cd04738         277 TG---GKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY  314 (327)
T ss_pred             hC---CCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence            53   247899999996 89999999999999999999865

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate

Probab=98.32  E-value=1.5e-05  Score=64.91  Aligned_cols=132  Identities=17%  Similarity=0.269  Sum_probs=88.6

Q ss_pred             HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCCH-------HHHHHhh----cccce--E
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSL-------SAIECVL----DVVDL--V  100 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~-------~~~~~~~----~~~d~--i  100 (190)
                      .+++.++|++++.+ |.|-     .+.+.+.+-++.+.++|+.+.+.+.-....       +.+...+    +.++.  =
T Consensus        77 ~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~~  156 (242)
T cd00311          77 AEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAP  156 (242)
T ss_pred             HHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhcC
Confidence            67899999999999 4332     024667888889999999998888732211       1122222    11110  0


Q ss_pred             EEEeeec----CCCCcccchh-hHHHHHHHHHHHhhcC----CCCeEEEeCCCCcccHHHHHHcC-CCEEEEcccccCCC
Q 029661          101 LIMSVNP----GFGGQSFIES-QVKKISDLRRMCLEKG----VNPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVFGAK  170 (190)
Q Consensus       101 ~~m~v~p----G~~gq~~~~~-~~~ki~~~~~~~~~~~----~~~~i~vdGGI~~e~~~~~~~aG-ad~~VvGsaI~~~~  170 (190)
                      +++.-+|    |+ |....++ .-+-++.+|+.+.+..    .+++|..+|+++++|+.++.+.+ +|++-+||+-.+++
T Consensus       157 ~iIAYEPvWAIGt-G~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~  235 (242)
T cd00311         157 VVIAYEPVWAIGT-GKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAE  235 (242)
T ss_pred             eEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhhCHH
Confidence            2345566    53 4444444 5555677777765432    35789999999999999999999 99999999988654


Q ss_pred             CH
Q 029661          171 DY  172 (190)
Q Consensus       171 dp  172 (190)
                      ++
T Consensus       236 ~f  237 (242)
T cd00311         236 SF  237 (242)
T ss_pred             HH
Confidence            44

The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=98.32  E-value=2.9e-05  Score=65.12  Aligned_cols=145  Identities=12%  Similarity=0.131  Sum_probs=96.1

Q ss_pred             HHHHhccCCCCcEEEEEeec-ChHH---HHHHHHHcCCCEEEEcccCCCcc---hHHHHHHHHHHh-CCcEEEEEcCCCC
Q 029661           15 VVDALRPVTDLPLDVHLMIV-EPEQ---RVPDFIKAGADIVSVHCEQSSTI---HLHRTLNQIKDL-GAKAGVVLNPATS   86 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~-dp~~---~i~~~~~~Gad~v~vh~e~~~~~---~~~~~i~~i~~~-g~~~g~~i~p~t~   86 (190)
                      ..+++++..+.|+-+.|... +|..   .++.+.+.|++.+.+|..+ +..   ...+.++++++. +..+.+-..  .+
T Consensus       106 ~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~-p~~~~~~~~~~i~~l~~~~~~pvivK~v--~s  182 (299)
T cd02809         106 SLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDT-PVLGRRLTWDDLAWLRSQWKGPLILKGI--LT  182 (299)
T ss_pred             CHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCC-CCCCCCCCHHHHHHHHHhcCCCEEEeec--CC
Confidence            34455554447888998875 7753   4566688899999999875 210   012567777775 555544321  34


Q ss_pred             HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcc
Q 029661           87 LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGS  164 (190)
Q Consensus        87 ~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGs  164 (190)
                      .+..+...+ .+|.|.+-. +.| ......+.+++.+.++++..++   +++|.++|||+ ...+.++...|||.+-+||
T Consensus       183 ~~~a~~a~~~G~d~I~v~~-~gG-~~~~~g~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~d~~kal~lGAd~V~ig~  257 (299)
T cd02809         183 PEDALRAVDAGADGIVVSN-HGG-RQLDGAPATIDALPEIVAAVGG---RIEVLLDGGIRRGTDVLKALALGADAVLIGR  257 (299)
T ss_pred             HHHHHHHHHCCCCEEEEcC-CCC-CCCCCCcCHHHHHHHHHHHhcC---CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcH
Confidence            455555544 488887632 222 1112345677788888776532   47899999998 6888888899999999999


Q ss_pred             ccc
Q 029661          165 AVF  167 (190)
Q Consensus       165 aI~  167 (190)
                      +++
T Consensus       258 ~~l  260 (299)
T cd02809         258 PFL  260 (299)
T ss_pred             HHH
Confidence            865

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.32  E-value=3.6e-05  Score=62.39  Aligned_cols=145  Identities=10%  Similarity=0.106  Sum_probs=90.0

Q ss_pred             HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEcC--------
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNP--------   83 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~p--------   83 (190)
                      .+.++++.+.+..|+.+.==+.+.+ -++.+.+.||+.|++.-++  ..+++.+-+.++++| -++.+++..        
T Consensus        62 ~~~i~~i~~~~~~~v~vGGGIrs~e-~~~~~l~~Ga~kvvigt~a--~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~  138 (232)
T PRK13586         62 EMYIKEISKIGFDWIQVGGGIRDIE-KAKRLLSLDVNALVFSTIV--FTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLI  138 (232)
T ss_pred             HHHHHHHHhhCCCCEEEeCCcCCHH-HHHHHHHCCCCEEEECchh--hCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEc
Confidence            4788888773222554433334433 4577888999999998775  566766666677775 344433332        


Q ss_pred             ----C---CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661           84 ----A---TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE  154 (190)
Q Consensus        84 ----~---t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~  154 (190)
                          .   ++.+.++++.+. +..++++++.--...+-+.   ++.++++++. .    +. +.+.||++ .+++..+.+
T Consensus       139 ~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d---~el~~~~~~~-~----~~-viasGGv~s~~Dl~~l~~  209 (232)
T PRK13586        139 RGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGID---YNVKDYARLI-R----GL-KEYAGGVSSDADLEYLKN  209 (232)
T ss_pred             cCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcC---HHHHHHHHhC-C----CC-EEEECCCCCHHHHHHHHH
Confidence                1   222344444332 5678887776422233333   3334444443 1    23 56799999 699999999


Q ss_pred             cCCCEEEEcccccCC
Q 029661          155 AGANALVAGSAVFGA  169 (190)
Q Consensus       155 aGad~~VvGsaI~~~  169 (190)
                      .|+|.+++|+|++..
T Consensus       210 ~G~~gvivg~Aly~g  224 (232)
T PRK13586        210 VGFDYIIVGMAFYLG  224 (232)
T ss_pred             CCCCEEEEehhhhcC
Confidence            999999999999853

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.32  E-value=3.2e-05  Score=62.52  Aligned_cols=141  Identities=18%  Similarity=0.184  Sum_probs=90.4

Q ss_pred             HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC---------
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP---------   83 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p---------   83 (190)
                      .+.++++.+.++.|+.+.==+.+.+ -++.+.+.|++.+++.-++  . ++.-+-+.++++|- +.+++..         
T Consensus        62 ~~~i~~i~~~~~~pv~~gGGIrs~e-dv~~l~~~G~~~vivGtaa--~-~~~~l~~~~~~~g~-ivvslD~~~g~v~~~g  136 (228)
T PRK04128         62 LDVVKNIIRETGLKVQVGGGLRTYE-SIKDAYEIGVENVIIGTKA--F-DLEFLEKVTSEFEG-ITVSLDVKGGRIAVKG  136 (228)
T ss_pred             HHHHHHHHhhCCCCEEEcCCCCCHH-HHHHHHHCCCCEEEECchh--c-CHHHHHHHHHHcCC-EEEEEEccCCeEecCC
Confidence            5678888877777777643344443 4566788899999998664  3 45544444555553 5444331         


Q ss_pred             ------CCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC
Q 029661           84 ------ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG  156 (190)
Q Consensus        84 ------~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG  156 (190)
                            -++.+.++.+.+.+..++++++.-  .|..-.+.   .+.+   .+.    +.++.+.||++ .+++.++.+.|
T Consensus       137 w~~~~~~~~~~~~~~~~~~~~~ii~t~i~~--dGt~~G~d---~l~~---~~~----~~pviasGGv~~~~Dl~~l~~~g  204 (228)
T PRK04128        137 WLEESSIKVEDAYEMLKNYVNRFIYTSIER--DGTLTGIE---EIER---FWG----DEEFIYAGGVSSAEDVKKLAEIG  204 (228)
T ss_pred             CeEcCCCCHHHHHHHHHHHhCEEEEEeccc--hhcccCHH---HHHH---hcC----CCCEEEECCCCCHHHHHHHHHCC
Confidence                  122343444433467788888864  33322222   2222   211    36889999999 69999999999


Q ss_pred             CCEEEEcccccCCC
Q 029661          157 ANALVAGSAVFGAK  170 (190)
Q Consensus       157 ad~~VvGsaI~~~~  170 (190)
                      ++.+++||+++...
T Consensus       205 ~~gvivg~al~~g~  218 (228)
T PRK04128        205 FSGVIIGKALYEGR  218 (228)
T ss_pred             CCEEEEEhhhhcCC
Confidence            99999999998764

>cd02812 PcrB_like PcrB_like proteins

Probab=98.31  E-value=8.9e-06  Score=65.25  Aligned_cols=140  Identities=19%  Similarity=0.206  Sum_probs=78.6

Q ss_pred             HHHHhccCCC-CcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHH----H---HHHHHHH--hCCcE----EEE
Q 029661           15 VVDALRPVTD-LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLH----R---TLNQIKD--LGAKA----GVV   80 (190)
Q Consensus        15 ~v~~i~~~~~-~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~----~---~i~~i~~--~g~~~----g~~   80 (190)
                      .++.+++.++ +|+..  -..|+...     .-+||.+.|+..-.+ .++.    .   .+..+++  .+.++    .+.
T Consensus        44 ~~~~ik~~~~~~Pvil--fp~~~~~i-----~~~aDa~l~~svlns-~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv  115 (219)
T cd02812          44 VVRLIKRIRRPVPVIL--FPSNPEAV-----SPGADAYLFPSVLNS-GDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLV  115 (219)
T ss_pred             HHHHHHHhcCCCCEEE--eCCCcccc-----CcCCCEEEEEeeecC-CCchHHHHHHHHHHHHhccccccccccceEEEE
Confidence            4556666554 55554  55665544     357999999854311 1222    2   2233333  23332    345


Q ss_pred             EcCCCC------------HHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cc
Q 029661           81 LNPATS------------LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PK  147 (190)
Q Consensus        81 i~p~t~------------~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e  147 (190)
                      ++|...            .+.+..|....+++.+--++--++|..-.   .+.++++++...    +.++.++|||+ +|
T Consensus       116 ~~~~~~v~~v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~~~---~e~I~~v~~~~~----~~pl~vGGGIrs~e  188 (219)
T cd02812         116 LNPDSTVARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGP---PEVVRAVKKVLG----DTPLIVGGGIRSGE  188 (219)
T ss_pred             ECCCCceeeeeccCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCcCC---HHHHHHHHHhcC----CCCEEEeCCCCCHH
Confidence            555433            23333333333333211122124454423   444555565441    36899999998 89


Q ss_pred             cHHHHHHcCCCEEEEcccccCC
Q 029661          148 NAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       148 ~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      +++++.++|||.+|+||++++.
T Consensus       189 ~a~~l~~aGAD~VVVGsai~~~  210 (219)
T cd02812         189 QAKEMAEAGADTIVVGNIVEED  210 (219)
T ss_pred             HHHHHHHcCCCEEEECchhhCC
Confidence            9999999999999999999984

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=98.27  E-value=2.4e-05  Score=66.96  Aligned_cols=162  Identities=19%  Similarity=0.218  Sum_probs=104.5

Q ss_pred             cccCcCCC---CHH-HHHHhccC-CCCcEEEEEeec-------ChHHHHHHHHHcC--CCEEEEcccCC---------Cc
Q 029661            4 RFVPNITI---GPL-VVDALRPV-TDLPLDVHLMIV-------EPEQRVPDFIKAG--ADIVSVHCEQS---------ST   60 (190)
Q Consensus         4 ~fvpn~~~---G~~-~v~~i~~~-~~~~i~~hlmv~-------dp~~~i~~~~~~G--ad~v~vh~e~~---------~~   60 (190)
                      -|.+.++|   |.+ +++++++. .++|+.+-+.-.       .+.+|.+.+.+++  ||.+.+-..+.         ..
T Consensus       112 ~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~  191 (344)
T PRK05286        112 ALINRMGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYG  191 (344)
T ss_pred             ccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCH
Confidence            45666666   233 45566554 567899988643       3467777665555  99988753321         02


Q ss_pred             chHHHHHHHHHHh-C-----CcEEEEEcCCCCHHHHHHhh---c--ccceEEEEeeec---------------CCCCccc
Q 029661           61 IHLHRTLNQIKDL-G-----AKAGVVLNPATSLSAIECVL---D--VVDLVLIMSVNP---------------GFGGQSF  114 (190)
Q Consensus        61 ~~~~~~i~~i~~~-g-----~~~g~~i~p~t~~~~~~~~~---~--~~d~i~~m~v~p---------------G~~gq~~  114 (190)
                      +.+.++++++|+. +     +.+.+=++|+.+.+.+.+++   .  .+|.|.+....+               |.+|...
T Consensus       192 ~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~  271 (344)
T PRK05286        192 EALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPL  271 (344)
T ss_pred             HHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHH
Confidence            3466788888874 4     66777788886643333332   2  378887654321               2223222


Q ss_pred             chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661          115 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       115 ~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      .+..++-++++++...   .+++|..-|||+ .+++.+++.+|||.+-+||+++.
T Consensus       272 ~~~~l~~v~~l~~~~~---~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~  323 (344)
T PRK05286        272 FERSTEVIRRLYKELG---GRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY  323 (344)
T ss_pred             HHHHHHHHHHHHHHhC---CCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence            3445666777666542   247899999999 79999999999999999999864

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=98.25  E-value=8.9e-06  Score=67.30  Aligned_cols=90  Identities=14%  Similarity=0.261  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661           63 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI  138 (190)
Q Consensus        63 ~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i  138 (190)
                      +...++.+|+.   +.++|+.++   .++.+++.+ ..+|||++=   |      |.   ++.++++.+..++   +.++
T Consensus       168 i~~~v~~~r~~~~~~~~Igvev~---s~eea~~A~~~gaDyI~ld---~------~~---~e~l~~~~~~~~~---~ipi  229 (268)
T cd01572         168 ITEAVRRARAAAPFTLKIEVEVE---TLEQLKEALEAGADIIMLD---N------MS---PEELREAVALLKG---RVLL  229 (268)
T ss_pred             HHHHHHHHHHhCCCCCeEEEEEC---CHHHHHHHHHcCCCEEEEC---C------cC---HHHHHHHHHHcCC---CCcE
Confidence            45567777775   467777776   345555544 358999762   1      22   3455666655432   4789


Q ss_pred             EEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661          139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       139 ~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      .+.||||++|+.++.++|+|++.+||...+++
T Consensus       230 ~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~~a~  261 (268)
T cd01572         230 EASGGITLENIRAYAETGVDYISVGALTHSAP  261 (268)
T ss_pred             EEECCCCHHHHHHHHHcCCCEEEEEeeecCCC
Confidence            99999999999999999999999999777653

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=98.25  E-value=4.9e-05  Score=64.56  Aligned_cols=130  Identities=20%  Similarity=0.322  Sum_probs=85.2

Q ss_pred             HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCC--Ccc
Q 029661           37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS  113 (190)
Q Consensus        37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~--gq~  113 (190)
                      ...++.+.++|++.|.+....+..+...+.++.+|+.+-.+-+....-.+.+..+.+++ .+|.|.+ +.-||..  ++.
T Consensus        96 ~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~v-g~g~G~~~~t~~  174 (325)
T cd00381          96 KERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKV-GIGPGSICTTRI  174 (325)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEE-CCCCCcCcccce
Confidence            35678889999999887543222345677899999876323333333355566666655 4899876 3344431  111


Q ss_pred             ---cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          114 ---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       114 ---~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                         .....+.-+.++++...+  .++++..+|||+ ...+.++..+|||.+.+||.+...
T Consensus       175 ~~g~g~p~~~~i~~v~~~~~~--~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t  232 (325)
T cd00381         175 VTGVGVPQATAVADVAAAARD--YGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGT  232 (325)
T ss_pred             eCCCCCCHHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccc
Confidence               112234555666665543  247888999998 689999999999999999988754

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=98.24  E-value=6.4e-05  Score=61.81  Aligned_cols=153  Identities=20%  Similarity=0.222  Sum_probs=95.2

Q ss_pred             HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcch----HHHHHHHHHHhCC-cE--EEEEc--C
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH----LHRTLNQIKDLGA-KA--GVVLN--P   83 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~----~~~~i~~i~~~g~-~~--g~~i~--p   83 (190)
                      .+.+++|++ ++.++.+===+ +. +-++.+.++||+.|++---+  ..+    ++-+-+.++++|- ++  ++...  .
T Consensus        73 ~~~i~~i~~-~~~~vqvGGGI-R~-e~i~~~l~~Ga~rViigT~A--v~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~  147 (262)
T PLN02446         73 AAALEALRA-YPGGLQVGGGV-NS-ENAMSYLDAGASHVIVTSYV--FRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKD  147 (262)
T ss_pred             HHHHHHHHh-CCCCEEEeCCc-cH-HHHHHHHHcCCCEEEEchHH--HhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecC
Confidence            567888877 55555442112 23 56788999999999997543  334    6666677777752 22  33332  1


Q ss_pred             C---------------CCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-c
Q 029661           84 A---------------TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P  146 (190)
Q Consensus        84 ~---------------t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~  146 (190)
                      .               ++.+.+.++.+ .++.+++-.+.  .+|....+. ++.++++++..     +.++.+.||++ .
T Consensus       148 g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~--rDGtl~G~d-~el~~~l~~~~-----~ipVIASGGv~sl  219 (262)
T PLN02446        148 GRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVD--VEGKRLGID-EELVALLGEHS-----PIPVTYAGGVRSL  219 (262)
T ss_pred             CCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEc--CCCcccCCC-HHHHHHHHhhC-----CCCEEEECCCCCH
Confidence            1               22344455443 36777775554  334332222 44455555543     46899999999 7


Q ss_pred             ccHHHHHHc--CCCEEEEcccc--cCCC-CHHHHHHH
Q 029661          147 KNAYKVIEA--GANALVAGSAV--FGAK-DYAEAIKG  178 (190)
Q Consensus       147 e~~~~~~~a--Gad~~VvGsaI--~~~~-dp~~~~~~  178 (190)
                      +++..+.+.  |...+|+|+|+  |... +.++++.+
T Consensus       220 eDi~~L~~~g~g~~gvIvGkAl~~y~g~~~l~ea~~~  256 (262)
T PLN02446        220 DDLERVKVAGGGRVDVTVGSALDIFGGNLPYDDVVAW  256 (262)
T ss_pred             HHHHHHHHcCCCCEEEEEEeeHHHhCCCccHHHHHHH
Confidence            999999887  57889999999  8654 55555544

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=98.23  E-value=9.6e-05  Score=60.66  Aligned_cols=140  Identities=12%  Similarity=0.190  Sum_probs=90.1

Q ss_pred             HHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC----C----cchHHHHHHHHHHhCCcEEEE--EcCC--
Q 029661           17 DALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS----S----TIHLHRTLNQIKDLGAKAGVV--LNPA--   84 (190)
Q Consensus        17 ~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~----~----~~~~~~~i~~i~~~g~~~g~~--i~p~--   84 (190)
                      .++|+...+|+-+.++-+|+..-+..+..+|+|.|=+-..++    +    .....+++++-++.|.++-+.  +++.  
T Consensus        72 ~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~  151 (257)
T TIGR00259        72 GQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHA  151 (257)
T ss_pred             HHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeeccc
Confidence            345555677999999888998888888999999887621110    0    124566777766656555443  3322  


Q ss_pred             -----CCHHH-HHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC
Q 029661           85 -----TSLSA-IECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG  156 (190)
Q Consensus        85 -----t~~~~-~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG  156 (190)
                           .+++. ++....  .+|-|.+-+.   .+|+.+..+.+   +++|+...    +.++-+.||+|++|+.++.+. 
T Consensus       152 ~~l~~~~~~e~a~~~~~~~~aDavivtG~---~TG~~~d~~~l---~~vr~~~~----~~PvllggGvt~eNv~e~l~~-  220 (257)
T TIGR00259       152 VHLGNRDLESIALDTVERGLADAVILSGK---TTGTEVDLELL---KLAKETVK----DTPVLAGSGVNLENVEELLSI-  220 (257)
T ss_pred             CcCCCCCHHHHHHHHHHhcCCCEEEECcC---CCCCCCCHHHH---HHHHhccC----CCeEEEECCCCHHHHHHHHhh-
Confidence                 23322 332222  2788875222   14666655544   44444222    357899999999999999987 


Q ss_pred             CCEEEEccccc
Q 029661          157 ANALVAGSAVF  167 (190)
Q Consensus       157 ad~~VvGsaI~  167 (190)
                      +|++++||.+=
T Consensus       221 adGviVgS~~K  231 (257)
T TIGR00259       221 ADGVIVATTIK  231 (257)
T ss_pred             CCEEEECCCcc
Confidence            99999999963

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=98.22  E-value=0.00011  Score=58.46  Aligned_cols=149  Identities=21%  Similarity=0.241  Sum_probs=100.5

Q ss_pred             CHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh-CCcEEEEEcCCCC--H
Q 029661           12 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKAGVVLNPATS--L   87 (190)
Q Consensus        12 G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~-g~~~g~~i~p~t~--~   87 (190)
                      .++..++|.+. +..+.+.=++-.++..+.+.+.+.+.|.|=+|.+-     ..+.++.+|+. ++.+.-+++....  .
T Consensus        39 s~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~~~~~l~~~~~~~v~kai~v~~~~~~  113 (208)
T COG0135          39 SPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPEYIDQLKEELGVPVIKAISVSEEGDL  113 (208)
T ss_pred             CHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHHHHHHHHhhcCCceEEEEEeCCccch
Confidence            56677777764 33444443333455667777899999999999862     23466677765 4777767665543  4


Q ss_pred             HHHHHhhcccceEEEEeee---cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCC-CEEEEc
Q 029661           88 SAIECVLDVVDLVLIMSVN---PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGA-NALVAG  163 (190)
Q Consensus        88 ~~~~~~~~~~d~i~~m~v~---pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGa-d~~VvG  163 (190)
                      +....+...+|.+++=+-.   +|.+||.|.-..+...   +       ...++...||+|++|+.++++.+. .++=+-
T Consensus       114 ~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~---~-------~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvS  183 (208)
T COG0135         114 ELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL---R-------LSKPVMLAGGLNPDNVAEAIALGPPYGVDVS  183 (208)
T ss_pred             hhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc---c-------ccCCEEEECCCCHHHHHHHHHhcCCceEEec
Confidence            5555555668988875542   5778999875554433   1       124588999999999999999988 777777


Q ss_pred             ccccCC---CCHHHH
Q 029661          164 SAVFGA---KDYAEA  175 (190)
Q Consensus       164 saI~~~---~dp~~~  175 (190)
                      |.+=.+   .|+...
T Consensus       184 SGVE~~pG~KD~~kv  198 (208)
T COG0135         184 SGVESSPGIKDPAKV  198 (208)
T ss_pred             cccccCCCCCCHHHH
Confidence            776543   577533

>PRK14567 triosephosphate isomerase; Provisional

Probab=98.22  E-value=5.3e-05  Score=62.07  Aligned_cols=139  Identities=19%  Similarity=0.273  Sum_probs=89.0

Q ss_pred             HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCCHH--------H----HHHhhcccce--
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSLS--------A----IECVLDVVDL--   99 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~--------~----~~~~~~~~d~--   99 (190)
                      .+++.++|++++.+ |.|-     .+++.+.+-++.+.++|+.+.+.+.- |.-+        .    ++..++.++.  
T Consensus        78 ~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGE-t~eere~g~~~~vv~~Ql~~~l~~i~~~~  156 (253)
T PRK14567         78 ARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGE-SLDDRQSGKLKQVLATQLSLILENLSVEQ  156 (253)
T ss_pred             HHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHHcCCHHHHHHHHHHHHHccCCHHH
Confidence            67899999999999 3331     02455677788889999999888873 2211        1    1222222111  


Q ss_pred             --EEEEeeec----CCCCcccchhhH-HHHHHHHHHHhhc----CCCCeEEEeCCCCcccHHHHHHcC-CCEEEEccccc
Q 029661          100 --VLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLEK----GVNPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVF  167 (190)
Q Consensus       100 --i~~m~v~p----G~~gq~~~~~~~-~ki~~~~~~~~~~----~~~~~i~vdGGI~~e~~~~~~~aG-ad~~VvGsaI~  167 (190)
                        =++.+-+|    |+ |+.-.|+.. +-.+.+|+.+.+.    ..+++|..+|+++++|+.++.+.+ +|++-+|++..
T Consensus       157 ~~~ivIAYEPvWAIGT-G~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgasL  235 (253)
T PRK14567        157 LAKVVIAYEPVWAIGT-GVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASL  235 (253)
T ss_pred             hCCEEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhhh
Confidence              02345566    43 444333333 2334555544321    235789999999999999998888 99999999988


Q ss_pred             CCCCHHHHHHHHH
Q 029661          168 GAKDYAEAIKGIK  180 (190)
Q Consensus       168 ~~~dp~~~~~~l~  180 (190)
                      +++++.+-++...
T Consensus       236 ~~~~F~~Ii~~~~  248 (253)
T PRK14567        236 KAAEFNEIINQAN  248 (253)
T ss_pred             cHHHHHHHHHHHH
Confidence            8777766665543

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=98.20  E-value=2.9e-05  Score=63.07  Aligned_cols=126  Identities=20%  Similarity=0.202  Sum_probs=81.4

Q ss_pred             CCEEEEc--ccCC-CcchHHHHHHHHHH---hCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCccc-chhhH
Q 029661           48 ADIVSVH--CEQS-STIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQV  119 (190)
Q Consensus        48 ad~v~vh--~e~~-~~~~~~~~i~~i~~---~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~-~~~~~  119 (190)
                      -+||=+-  .+.. -..++.+++++++.   .|..|-.-+++  +.-..+++.+ .+..|+-++...|. ||-. .+..+
T Consensus       105 ~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~--D~v~a~rLed~Gc~aVMPlgsPIGS-g~Gl~n~~~l  181 (267)
T CHL00162        105 NNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINA--DPMLAKHLEDIGCATVMPLGSPIGS-GQGLQNLLNL  181 (267)
T ss_pred             CCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCC--CHHHHHHHHHcCCeEEeeccCcccC-CCCCCCHHHH
Confidence            6787663  2210 02346677777766   45555544543  2222333332 24455555555564 4433 34444


Q ss_pred             HHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          120 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       120 ~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      +.|   ++.     .++++.+|+||+ ++++....+.|+|.+-+.|+|++++||.+.++.++..++
T Consensus       182 ~~i---~e~-----~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~  239 (267)
T CHL00162        182 QII---IEN-----AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQ  239 (267)
T ss_pred             HHH---HHc-----CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHH
Confidence            333   332     357899999999 799999999999999999999999999999999887553

>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=98.20  E-value=0.00013  Score=58.22  Aligned_cols=146  Identities=18%  Similarity=0.140  Sum_probs=93.7

Q ss_pred             CHHHHHHhccC-C-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHH-hCCcEEEEEcCCC--C
Q 029661           12 GPLVVDALRPV-T-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-LGAKAGVVLNPAT--S   86 (190)
Q Consensus        12 G~~~v~~i~~~-~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~-~g~~~g~~i~p~t--~   86 (190)
                      .++..++|.+. + .+..+.=+.-.++....+.+.+.+.|.|-+|...    ++ ..++.+|+ .++++.-++....  .
T Consensus        40 ~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~e----~~-~~~~~l~~~~~~~iik~i~v~~~~~  114 (210)
T PRK01222         40 SPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGDE----TP-EFCRQLKRRYGLPVIKALRVRSAGD  114 (210)
T ss_pred             CHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC----CH-HHHHHHHhhcCCcEEEEEecCCHHH
Confidence            56667777764 2 2444443334567778888899999999999753    22 34666666 4677766666544  3


Q ss_pred             HHHHHHhhcccceEEEEeeec--CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHc-CCCEEEEc
Q 029661           87 LSAIECVLDVVDLVLIMSVNP--GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAG  163 (190)
Q Consensus        87 ~~~~~~~~~~~d~i~~m~v~p--G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~a-Gad~~VvG  163 (190)
                      +....++.+.+|++++=+..|  |.+|..|.-..+   .  +.+      ..++.++|||+++|+.++++. +..++=+-
T Consensus       115 l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l---~--~~~------~~p~~LAGGi~peNv~~ai~~~~p~gvDvs  183 (210)
T PRK01222        115 LEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLL---P--AGL------AKPWILAGGLNPDNVAEAIRQVRPYGVDVS  183 (210)
T ss_pred             HHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHh---h--hcc------CCCEEEECCCCHHHHHHHHHhcCCCEEEec
Confidence            444455556689988755433  555766654333   1  111      236789999999999998875 77777777


Q ss_pred             ccccCC---CCHH
Q 029661          164 SAVFGA---KDYA  173 (190)
Q Consensus       164 saI~~~---~dp~  173 (190)
                      |.+=.+   .|+.
T Consensus       184 SgvE~~~G~KD~~  196 (210)
T PRK01222        184 SGVESAPGIKDPE  196 (210)
T ss_pred             CceECCCCCcCHH
Confidence            776432   4554

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=98.19  E-value=1.2e-05  Score=66.37  Aligned_cols=88  Identities=16%  Similarity=0.288  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661           63 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI  138 (190)
Q Consensus        63 ~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i  138 (190)
                      ....++.+|+.   +.++|+.++   .++.+.+.+ ..+|||.+   .|      +.+   +.++++.+.++.   ..++
T Consensus       164 ~~~av~~~r~~~~~~~~Igvev~---t~eea~~A~~~gaDyI~l---d~------~~~---e~lk~~v~~~~~---~ipi  225 (265)
T TIGR00078       164 IEKAVKRARAAAPFALKIEVEVE---SLEEAEEAAEAGADIIML---DN------MKP---EEIKEAVQLLKG---RVLL  225 (265)
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeC---CHHHHHHHHHcCCCEEEE---CC------CCH---HHHHHHHHHhcC---CCcE
Confidence            56677888874   466777775   334444444 35899976   11      233   334544444432   2689


Q ss_pred             EEeCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661          139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       139 ~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .+.||||++|++++.++|+|++.+ |+++.+
T Consensus       226 ~AsGGI~~~ni~~~a~~Gvd~Isv-gait~s  255 (265)
T TIGR00078       226 EASGGITLDNLEEYAETGVDVISS-GALTHS  255 (265)
T ss_pred             EEECCCCHHHHHHHHHcCCCEEEe-CHHHcC
Confidence            999999999999999999999999 556653

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=98.18  E-value=4.7e-05  Score=64.15  Aligned_cols=133  Identities=21%  Similarity=0.216  Sum_probs=92.0

Q ss_pred             HHHHHHc-CCCEEEE--cccCC-CcchHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhhcccceEEEEe-eec-CCC
Q 029661           40 VPDFIKA-GADIVSV--HCEQS-STIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVDLVLIMS-VNP-GFG  110 (190)
Q Consensus        40 i~~~~~~-Gad~v~v--h~e~~-~~~~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~-v~p-G~~  110 (190)
                      .+.+.++ |-|||=+  +.|.- ...++.++++++++.   |+.+-..+++  +....+.+.+. --+.+|. -.| | +
T Consensus       156 a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~--d~~~a~~l~~~-g~~avmPl~~pIG-s  231 (326)
T PRK11840        156 LRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSD--DPIAAKRLEDA-GAVAVMPLGAPIG-S  231 (326)
T ss_pred             HHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHhc-CCEEEeecccccc-C
Confidence            4445665 5688876  34321 134688999999998   9988777764  33334444332 2355555 333 5 4


Q ss_pred             Cccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          111 GQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       111 gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      |+.. .|+.+   +.+++.     .++++.+|+||+ ++++....+.|+|.+-+-|+|.+++||...++.++...+
T Consensus       232 g~gv~~p~~i---~~~~e~-----~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~  299 (326)
T PRK11840        232 GLGIQNPYTI---RLIVEG-----ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE  299 (326)
T ss_pred             CCCCCCHHHH---HHHHHc-----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence            5443 34444   444433     347899999999 799999999999999999999999999999999987543

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.17  E-value=5.5e-05  Score=67.00  Aligned_cols=129  Identities=19%  Similarity=0.345  Sum_probs=84.6

Q ss_pred             HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCC--Ccc-
Q 029661           38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS-  113 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~--gq~-  113 (190)
                      +.++.+.++|+|.|.+-.-.+......+.++.+|+.--++-+....-...+..+.+++ .+|.|-+ ++.||..  .+. 
T Consensus       227 ~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~v-g~g~G~~~~t~~~  305 (450)
T TIGR01302       227 ERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRV-GIGPGSICTTRIV  305 (450)
T ss_pred             HHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEE-CCCCCcCCcccee
Confidence            4567889999999998543222345777888888862223222322234444555554 4898866 6677721  111 


Q ss_pred             --cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          114 --FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       114 --~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                        +....+.-+.++++...+  .+.+|.+||||+ +..+.++.++|||.+.+||.+...
T Consensus       306 ~~~g~p~~~~i~~~~~~~~~--~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~  362 (450)
T TIGR01302       306 AGVGVPQITAVYDVAEYAAQ--SGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGT  362 (450)
T ss_pred             cCCCccHHHHHHHHHHHHhh--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence              122234555666655543  357899999999 789999999999999999999864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=98.17  E-value=4.9e-05  Score=64.48  Aligned_cols=120  Identities=20%  Similarity=0.244  Sum_probs=78.7

Q ss_pred             HHHHHHHHcCC--CEEEE-----cccCCCcchHHHHHHHHHHhCCcEEEEE-cCCCCHHHHHHhhc-ccceEEEEeeecC
Q 029661           38 QRVPDFIKAGA--DIVSV-----HCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPG  108 (190)
Q Consensus        38 ~~i~~~~~~Ga--d~v~v-----h~e~~~~~~~~~~i~~i~~~g~~~g~~i-~p~t~~~~~~~~~~-~~d~i~~m~v~pG  108 (190)
                      +.++.+.++|+  |.+.+     |.+     ...++++.+|+.--.+-+.. +.. +.+..+.+.+ .+|.+.+ +..||
T Consensus       100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~-----~~~e~I~~ir~~~p~~~vi~g~V~-t~e~a~~l~~aGad~i~v-g~~~G  172 (326)
T PRK05458        100 DFVDQLAAEGLTPEYITIDIAHGHSD-----SVINMIQHIKKHLPETFVIAGNVG-TPEAVRELENAGADATKV-GIGPG  172 (326)
T ss_pred             HHHHHHHhcCCCCCEEEEECCCCchH-----HHHHHHHHHHhhCCCCeEEEEecC-CHHHHHHHHHcCcCEEEE-CCCCC
Confidence            34677899955  99999     544     47778999988543233333 333 4455566554 4888654 55555


Q ss_pred             CC-------CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          109 FG-------GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       109 ~~-------gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      ..       |.......+.-++++++..     +.+|-.+|||+ +.++.++..+|||.+.+|+++.+.
T Consensus       173 ~~~~t~~~~g~~~~~w~l~ai~~~~~~~-----~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~  236 (326)
T PRK05458        173 KVCITKIKTGFGTGGWQLAALRWCAKAA-----RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGH  236 (326)
T ss_pred             cccccccccCCCCCccHHHHHHHHHHHc-----CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCC
Confidence            21       1111111333455555432     36789999999 789999999999999999999854

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=98.15  E-value=2e-05  Score=62.65  Aligned_cols=131  Identities=19%  Similarity=0.241  Sum_probs=79.4

Q ss_pred             HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHH----HHHHHH---HHhCCcE----EEEEcC
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLH----RTLNQI---KDLGAKA----GVVLNP   83 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~----~~i~~i---~~~g~~~----g~~i~p   83 (190)
                      .++.+|+.+++|+.+  -..|+....     -+||.+.|+..-. ..++.    .-.+.+   |++|.++    .+.++|
T Consensus        44 ~v~~ik~~~~lPvil--fp~~~~~i~-----~~aD~~~~~slln-s~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~  115 (205)
T TIGR01769        44 TVKKIKKITNLPVIL--FPGNVNGLS-----RYADAVFFMSLLN-SADTYFIVGAQILGAITILKLNLEVIPMAYLIVGP  115 (205)
T ss_pred             HHHHHHhhcCCCEEE--ECCCccccC-----cCCCEEEEEEeec-CCCcchhhhHHHHHHHHHHHcCCcccceEEEEECC
Confidence            468888878889887  455544333     4799999985331 12222    223334   7777654    234443


Q ss_pred             C--------------CCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC
Q 029661           84 A--------------TSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV  144 (190)
Q Consensus        84 ~--------------t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI  144 (190)
                      .              .+.+....|...     .+++.+-.. -|+ +   .+...+.++++|+..     +.++.+.|||
T Consensus       116 ~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~-sGa-~---~~v~~e~i~~Vk~~~-----~~Pv~vGGGI  185 (205)
T TIGR01769       116 GGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAG-SGA-S---YPVNPETISLVKKAS-----GIPLIVGGGI  185 (205)
T ss_pred             CCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcC-CCC-C---CCCCHHHHHHHHHhh-----CCCEEEeCCC
Confidence            2              344555554432     355544111 132 1   122355566666664     3689999999


Q ss_pred             C-cccHHHHHHcCCCEEEEc
Q 029661          145 G-PKNAYKVIEAGANALVAG  163 (190)
Q Consensus       145 ~-~e~~~~~~~aGad~~VvG  163 (190)
                      + +++++++.++|||.+|+|
T Consensus       186 rs~e~a~~l~~~GAD~VVVG  205 (205)
T TIGR01769       186 RSPEIAYEIVLAGADAIVTG  205 (205)
T ss_pred             CCHHHHHHHHHcCCCEEEeC
Confidence            8 799999999999999998

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>PRK08227 autoinducer 2 aldolase; Validated

Probab=98.14  E-value=2.4e-05  Score=64.47  Aligned_cols=150  Identities=13%  Similarity=0.166  Sum_probs=95.8

Q ss_pred             HHHHhcc-CCCCcEEEEEeecC-----h--H---HHHHHHHHcCCCEEEEcccCCC------cchHHHHHHHHHHhCCcE
Q 029661           15 VVDALRP-VTDLPLDVHLMIVE-----P--E---QRVPDFIKAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKA   77 (190)
Q Consensus        15 ~v~~i~~-~~~~~i~~hlmv~d-----p--~---~~i~~~~~~Gad~v~vh~e~~~------~~~~~~~i~~i~~~g~~~   77 (190)
                      .++.... ..++++.+||=-..     |  .   .-++.+.+.|||.|.+|..-++      .+++.++.+.++++|+-+
T Consensus        64 ~~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Pl  143 (264)
T PRK08227         64 ILRSVVPPATNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPV  143 (264)
T ss_pred             HHHhcccccCCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcE
Confidence            4444333 35678888875421     2  1   1378899999999999965432      234667778899999987


Q ss_pred             EEEEcCCCC-H----HHHHHhh----c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-
Q 029661           78 GVVLNPATS-L----SAIECVL----D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-  146 (190)
Q Consensus        78 g~~i~p~t~-~----~~~~~~~----~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-  146 (190)
                      .. +.|..+ +    +.+....    + .+|.|=+  -+|   +        +..+++-+-     ...++.+.||=+. 
T Consensus       144 la-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~--~y~---~--------~~f~~vv~a-----~~vPVviaGG~k~~  204 (264)
T PRK08227        144 MA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKT--YYV---E--------EGFERITAG-----CPVPIVIAGGKKLP  204 (264)
T ss_pred             EE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEec--CCC---H--------HHHHHHHHc-----CCCcEEEeCCCCCC
Confidence            66 445433 1    1111111    1 1465531  112   1        223333332     2368889999883 


Q ss_pred             -----ccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhh
Q 029661          147 -----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK  183 (190)
Q Consensus       147 -----e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~  183 (190)
                           +.+...+++||-++++||.||+++||.+.++.+++.+
T Consensus       205 ~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IV  246 (264)
T PRK08227        205 ERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVV  246 (264)
T ss_pred             HHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHH
Confidence                 2456778999999999999999999999999998754

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.14  E-value=6.8e-05  Score=67.27  Aligned_cols=126  Identities=22%  Similarity=0.303  Sum_probs=79.6

Q ss_pred             HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE-cCCCCHHHHHHhhc-ccceEEEEeeecCCC--Cc
Q 029661           37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQ  112 (190)
Q Consensus        37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i-~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~--gq  112 (190)
                      .+-++.+.++|+|.|.+-.-.+......+.++++|+.--..-+.. +..|. +..+..++ .+|.|.+ +.+||..  .+
T Consensus       250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~-e~a~~a~~aGaD~i~v-g~g~G~~~~t~  327 (505)
T PLN02274        250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTM-YQAQNLIQAGVDGLRV-GMGSGSICTTQ  327 (505)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCH-HHHHHHHHcCcCEEEE-CCCCCccccCc
Confidence            356788999999999985432212223378999998532233322 34444 44445444 4898765 5555521  11


Q ss_pred             c-----c-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          113 S-----F-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       113 ~-----~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .     . ....+..+.++.+   +  .+.+|.+||||+ .+.+.++..+|||.+.+||++...
T Consensus       328 ~~~~~g~~~~~~i~~~~~~~~---~--~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t  386 (505)
T PLN02274        328 EVCAVGRGQATAVYKVASIAA---Q--HGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGT  386 (505)
T ss_pred             cccccCCCcccHHHHHHHHHH---h--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhccc
Confidence            1     0 1123444444443   2  347899999999 789999999999999999999864

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=98.13  E-value=7e-05  Score=63.29  Aligned_cols=127  Identities=17%  Similarity=0.213  Sum_probs=82.5

Q ss_pred             HHHHHcCCCEEEEcccCC--------C----------------cchHHHHHHHHHHh---CCcEEEEEcCCC------CH
Q 029661           41 PDFIKAGADIVSVHCEQS--------S----------------TIHLHRTLNQIKDL---GAKAGVVLNPAT------SL   87 (190)
Q Consensus        41 ~~~~~~Gad~v~vh~e~~--------~----------------~~~~~~~i~~i~~~---g~~~g~~i~p~t------~~   87 (190)
                      +.+.++|+|.|-+|.-.+        +                ..-+.++++++|+.   ++.+++-+++..      +.
T Consensus       148 ~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~  227 (327)
T cd02803         148 RRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTL  227 (327)
T ss_pred             HHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCH
Confidence            446788999999996421        0                01135788888884   567888888753      22


Q ss_pred             HHHH----Hhhc-ccceEEEEeeecCCCCccc---------chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHH
Q 029661           88 SAIE----CVLD-VVDLVLIMSVNPGFGGQSF---------IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKV  152 (190)
Q Consensus        88 ~~~~----~~~~-~~d~i~~m~v~pG~~gq~~---------~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~  152 (190)
                      +...    .+.+ .+|+|.+   ..|...+..         .+..++.++++|+..     +.+|.+.|||+ ++++.++
T Consensus       228 ~e~~~la~~l~~~G~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-----~iPVi~~Ggi~t~~~a~~~  299 (327)
T cd02803         228 EEAIEIAKALEEAGVDALHV---SGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-----KIPVIAVGGIRDPEVAEEI  299 (327)
T ss_pred             HHHHHHHHHHHHcCCCEEEe---CCCCCcccccccCCCCCCcchhHHHHHHHHHHC-----CCCEEEeCCCCCHHHHHHH
Confidence            3222    2222 2788764   333322211         123345566666654     47899999998 8999999


Q ss_pred             HHc-CCCEEEEcccccCCCCHHHH
Q 029661          153 IEA-GANALVAGSAVFGAKDYAEA  175 (190)
Q Consensus       153 ~~a-Gad~~VvGsaI~~~~dp~~~  175 (190)
                      ++. |+|.+-+||+++..+|....
T Consensus       300 l~~g~aD~V~igR~~ladP~l~~k  323 (327)
T cd02803         300 LAEGKADLVALGRALLADPDLPNK  323 (327)
T ss_pred             HHCCCCCeeeecHHHHhCccHHHH
Confidence            998 79999999999987766543

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=98.12  E-value=0.00026  Score=59.29  Aligned_cols=142  Identities=17%  Similarity=0.201  Sum_probs=93.8

Q ss_pred             CCCcEEEEEeecChHHHHHH---HHHc---CCCEEEEcccCC----------CcchHHHHHHHHHHh-CCcEEEEEcCCC
Q 029661           23 TDLPLDVHLMIVEPEQRVPD---FIKA---GADIVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPAT   85 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~i~~---~~~~---Gad~v~vh~e~~----------~~~~~~~~i~~i~~~-g~~~g~~i~p~t   85 (190)
                      .+.|+.+.++-. ++.|++.   +.+.   |+|++-+-..+.          ..+.+.++++.+++. .+.+.+=+.|.+
T Consensus        90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~  168 (294)
T cd04741          90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT  168 (294)
T ss_pred             cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence            468999999877 8877654   3443   699988843320          123466778888775 566666688888


Q ss_pred             CHHHHHHhhc-------ccceEEE-------Eeeec--------------CCCCcccchhhHHHHHHHHHHHhhcCCCCe
Q 029661           86 SLSAIECVLD-------VVDLVLI-------MSVNP--------------GFGGQSFIESQVKKISDLRRMCLEKGVNPW  137 (190)
Q Consensus        86 ~~~~~~~~~~-------~~d~i~~-------m~v~p--------------G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~  137 (190)
                      +.+.+.++++       .+|.|..       |.+++              |.+|....+..++.++++++..+   .+++
T Consensus       169 ~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~---~~ip  245 (294)
T cd04741         169 DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLP---SEIQ  245 (294)
T ss_pred             CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcC---CCCC
Confidence            7554444433       2444442       11221              22233334556666777766553   2478


Q ss_pred             EEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661          138 IEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       138 i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      |..-|||. .+++.+++.+|||.+=+||+++.
T Consensus       246 Iig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~  277 (294)
T cd04741         246 IIGVGGVLDGRGAFRMRLAGASAVQVGTALGK  277 (294)
T ss_pred             EEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence            99999999 79999999999999999999885

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=98.12  E-value=1.7e-05  Score=65.73  Aligned_cols=91  Identities=19%  Similarity=0.215  Sum_probs=56.8

Q ss_pred             HHHHHHHHHhC--CcEEEEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEe
Q 029661           64 HRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD  141 (190)
Q Consensus        64 ~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vd  141 (190)
                      .+.++.+|+.-  .++++.+.  |.-+..+.....+|||.+=.+.         |..+   +++.+.+.+...++++.+.
T Consensus       171 ~~av~~~R~~~~~~~IgVev~--t~eea~~A~~~gaD~I~ld~~~---------p~~l---~~~~~~~~~~~~~i~i~As  236 (272)
T cd01573         171 LKALARLRATAPEKKIVVEVD--SLEEALAAAEAGADILQLDKFS---------PEEL---AELVPKLRSLAPPVLLAAA  236 (272)
T ss_pred             HHHHHHHHHhCCCCeEEEEcC--CHHHHHHHHHcCCCEEEECCCC---------HHHH---HHHHHHHhccCCCceEEEE
Confidence            56778888753  44555554  4433333333458999763222         2222   3333333222235789999


Q ss_pred             CCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661          142 GGVGPKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       142 GGI~~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      ||||++|+.++.++|+|++ +.|+|+.+
T Consensus       237 GGI~~~ni~~~~~~Gvd~I-~vsai~~a  263 (272)
T cd01573         237 GGINIENAAAYAAAGADIL-VTSAPYYA  263 (272)
T ss_pred             CCCCHHHHHHHHHcCCcEE-EEChhhcC
Confidence            9999999999999999999 55555654

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>PRK14565 triosephosphate isomerase; Provisional

Probab=98.12  E-value=8.2e-05  Score=60.41  Aligned_cols=135  Identities=14%  Similarity=0.204  Sum_probs=84.5

Q ss_pred             HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCCH-------HHHH----HhhcccceEEE
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSL-------SAIE----CVLDVVDLVLI  102 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~-------~~~~----~~~~~~d~i~~  102 (190)
                      .+.+.++|++++.+ |.|-     ...+.+.+-++.+.++|+.+.+.+.-....       +.+.    ..++..+- ++
T Consensus        78 ~~mLkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~~~~-iv  156 (237)
T PRK14565         78 AKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPKHGE-FI  156 (237)
T ss_pred             HHHHHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcCCCC-EE
Confidence            57899999999999 4332     013344455588889999998888732211       1111    11111111 33


Q ss_pred             Eeeec----CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHc-CCCEEEEcccccCCCCHHHHHH
Q 029661          103 MSVNP----GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVFGAKDYAEAIK  177 (190)
Q Consensus       103 m~v~p----G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~a-Gad~~VvGsaI~~~~dp~~~~~  177 (190)
                      .+-+|    | +|+...|+-   +.+..+.+.+...+.+|..+|+++++|+.++.+. ++|++-+||+..+++++..-++
T Consensus       157 IAYEPvWAIG-tG~~a~~e~---i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ii~  232 (237)
T PRK14565        157 IAYEPVWAIG-GSTIPSNDA---IAEAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCKIIQ  232 (237)
T ss_pred             EEECCHHHhC-CCCCCCHHH---HHHHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhcHHHHHHHHH
Confidence            45566    4 355444433   3333333332223578999999999999988664 8999999999988777766655


Q ss_pred             HH
Q 029661          178 GI  179 (190)
Q Consensus       178 ~l  179 (190)
                      .+
T Consensus       233 ~~  234 (237)
T PRK14565        233 QV  234 (237)
T ss_pred             HH
Confidence            43

>PRK00042 tpiA triosephosphate isomerase; Provisional

Probab=98.11  E-value=8.9e-05  Score=60.75  Aligned_cols=138  Identities=18%  Similarity=0.283  Sum_probs=84.8

Q ss_pred             HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCCH-------HH----HHHhhcccce---
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSL-------SA----IECVLDVVDL---   99 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~-------~~----~~~~~~~~d~---   99 (190)
                      .+++.++|++++.+ |.|-     .+.+.+.+-++.+.++|+.+.+.+.-....       +.    +...++.++.   
T Consensus        79 ~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~  158 (250)
T PRK00042         79 AEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQF  158 (250)
T ss_pred             HHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHHh
Confidence            67899999999999 4332     013345555556999999999888632111       11    1222222211   


Q ss_pred             -EEEEeeec----CCCCcccchhhHHH-HHHHHHHHhh----cCCCCeEEEeCCCCcccHHHH-HHcCCCEEEEcccccC
Q 029661          100 -VLIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLE----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFG  168 (190)
Q Consensus       100 -i~~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~----~~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~~  168 (190)
                       =++..-+|    |+ |..-.++-.+. .+.+|+.+.+    ...+++|..+|+++++|+.++ ...++|++-+||+..+
T Consensus       159 ~~~vIAYEPvWAIGt-G~~as~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~  237 (250)
T PRK00042        159 ANLVIAYEPVWAIGT-GKTATPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLK  237 (250)
T ss_pred             CCEEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeec
Confidence             02335566    53 44433333322 2344444332    123578999999999999865 6778999999999998


Q ss_pred             CCCHHHHHHH
Q 029661          169 AKDYAEAIKG  178 (190)
Q Consensus       169 ~~dp~~~~~~  178 (190)
                      ++++.+-++.
T Consensus       238 ~~~f~~ii~~  247 (250)
T PRK00042        238 AEDFLAIVKA  247 (250)
T ss_pred             hHHHHHHHHH
Confidence            8877766654

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.11  E-value=0.00012  Score=65.52  Aligned_cols=129  Identities=20%  Similarity=0.288  Sum_probs=82.5

Q ss_pred             HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCC--Ccc-
Q 029661           38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS-  113 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~--gq~-  113 (190)
                      +.++.+.++|+|.|.+-.-.+......+.++.+|+.--.+-+....-...+..+.+++ .+|.|.+ ++.||..  .+. 
T Consensus       244 ~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~v-g~g~Gs~~~t~~~  322 (495)
T PTZ00314        244 ERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRI-GMGSGSICITQEV  322 (495)
T ss_pred             HHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEE-CCcCCcccccchh
Confidence            4567789999999997543221223456888888863233333322334455555554 4898765 6666631  110 


Q ss_pred             --cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          114 --FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       114 --~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                        +.-..+.-+.++++...+  .++++..||||. +..+.++..+|||.+.+||.+...
T Consensus       323 ~~~g~p~~~ai~~~~~~~~~--~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~  379 (495)
T PTZ00314        323 CAVGRPQASAVYHVARYARE--RGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGT  379 (495)
T ss_pred             ccCCCChHHHHHHHHHHHhh--cCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccc
Confidence              111124455566665544  347899999999 789999999999999999998763

>PRK06801 hypothetical protein; Provisional

Probab=98.11  E-value=7e-05  Score=62.50  Aligned_cols=149  Identities=12%  Similarity=0.119  Sum_probs=98.6

Q ss_pred             HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC-cch---HHHHHHHHHHhCCcEEEE---E------
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS-TIH---LHRTLNQIKDLGAKAGVV---L------   81 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~-~~~---~~~~i~~i~~~g~~~g~~---i------   81 (190)
                      .++.+.+..++|+.+||==....+.++.+.+.|+++|-+=....+ .++   -.++.+.++++|+.+-..   +      
T Consensus        65 ~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~  144 (286)
T PRK06801         65 AVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGG  144 (286)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCC
Confidence            344445557889999985554456788999999999998432211 122   345666788888765111   1      


Q ss_pred             --------cCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCC--CCccc
Q 029661           82 --------NPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKN  148 (190)
Q Consensus        82 --------~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGG--I~~e~  148 (190)
                              +..|..+..+++.+  .+|++.+ ++-+--+-.+.. +..+++++++++..     ++++..-||  |+.++
T Consensus       145 v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~-----~~PLVlHGGSgi~~e~  218 (286)
T PRK06801        145 ALYGEADSAKFTDPQLARDFVDRTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQT-----GLPLVLHGGSGISDAD  218 (286)
T ss_pred             cccCCcccccCCCHHHHHHHHHHHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhc-----CCCEEEECCCCCCHHH
Confidence                    11345566666663  4898876 432211111112 24577777777654     368899999  99999


Q ss_pred             HHHHHHcCCCEEEEcccccCC
Q 029661          149 AYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       149 ~~~~~~aGad~~VvGsaI~~~  169 (190)
                      +++++++|++.+-++|.++.+
T Consensus       219 ~~~~i~~Gi~KINv~T~~~~a  239 (286)
T PRK06801        219 FRRAIELGIHKINFYTGMSQA  239 (286)
T ss_pred             HHHHHHcCCcEEEehhHHHHH
Confidence            999999999999999999863

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=98.11  E-value=0.00023  Score=59.73  Aligned_cols=150  Identities=19%  Similarity=0.195  Sum_probs=100.0

Q ss_pred             HHHhccC-CCCcEEEEEeec-ChHHHHH---HHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHh-CC
Q 029661           16 VDALRPV-TDLPLDVHLMIV-EPEQRVP---DFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDL-GA   75 (190)
Q Consensus        16 v~~i~~~-~~~~i~~hlmv~-dp~~~i~---~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~-g~   75 (190)
                      ++++++. .+.|+.+.+.-. +++.|.+   .+.+.|+|.+-+-..+.              ..+.+.++++.+++. ++
T Consensus        90 ~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~  169 (299)
T cd02940          90 IRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKI  169 (299)
T ss_pred             HHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCC
Confidence            4444443 357899988777 8877654   45567999998843321              012356777777764 45


Q ss_pred             cEEEEEcCCCC-HHHHHH-hhc-ccceEEE-------Ee-----------eec-----CCCCcccchhhHHHHHHHHHHH
Q 029661           76 KAGVVLNPATS-LSAIEC-VLD-VVDLVLI-------MS-----------VNP-----GFGGQSFIESQVKKISDLRRMC  129 (190)
Q Consensus        76 ~~g~~i~p~t~-~~~~~~-~~~-~~d~i~~-------m~-----------v~p-----G~~gq~~~~~~~~ki~~~~~~~  129 (190)
                      .+.+=+.|+.+ ...+.+ ..+ .+|.|.+       |.           +++     |++|....|..++.+.++++..
T Consensus       170 Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~  249 (299)
T cd02940         170 PVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAP  249 (299)
T ss_pred             CeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhc
Confidence            56666776542 323333 222 3787763       21           121     4556555677788888888876


Q ss_pred             hhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661          130 LEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       130 ~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      +   .+++|...|||+ .+++.+++.+|||.+-+||+++.
T Consensus       250 ~---~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~  286 (299)
T cd02940         250 E---PGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN  286 (299)
T ss_pred             C---CCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence            3   247899999999 78999999999999999999876

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.10  E-value=2.5e-05  Score=65.11  Aligned_cols=94  Identities=18%  Similarity=0.239  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHHhC--CcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661           62 HLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI  138 (190)
Q Consensus        62 ~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i  138 (190)
                      .+.+.++.+|++-  .+  +.+..+| ++.+.+.++ .+|.|++       +  .|.|+.   ++++.+++++.+.+..+
T Consensus       185 ~i~~ai~~~r~~~~~~k--IeVEv~t-l~ea~eal~~gaDiI~L-------D--nm~~e~---vk~av~~~~~~~~~v~i  249 (289)
T PRK07896        185 SVVAALRAVRAAAPDLP--CEVEVDS-LEQLDEVLAEGAELVLL-------D--NFPVWQ---TQEAVQRRDARAPTVLL  249 (289)
T ss_pred             cHHHHHHHHHHhCCCCC--EEEEcCC-HHHHHHHHHcCCCEEEe-------C--CCCHHH---HHHHHHHHhccCCCEEE
Confidence            4677888888752  33  4444333 444555554 4898876       2  244444   34444444334456789


Q ss_pred             EEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661          139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       139 ~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      ++.||||++|+.++.+.|+|++++|+...+++
T Consensus       250 eaSGGI~~~ni~~yA~tGvD~Is~galt~sa~  281 (289)
T PRK07896        250 ESSGGLTLDTAAAYAETGVDYLAVGALTHSVP  281 (289)
T ss_pred             EEECCCCHHHHHHHHhcCCCEEEeChhhcCCC
Confidence            99999999999999999999999999877654

>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional

Probab=98.10  E-value=8e-05  Score=63.93  Aligned_cols=143  Identities=16%  Similarity=0.194  Sum_probs=90.1

Q ss_pred             HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCC-------HHHH----HHhhcccc---e
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LSAI----ECVLDVVD---L   99 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-------~~~~----~~~~~~~d---~   99 (190)
                      .+++.++|++++.+ |.|-     ..++.+..-++.+.++|+.+.+.+.-...       .+.+    +..++.++   +
T Consensus        88 ~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~~v~~~~~  167 (355)
T PRK14905         88 PLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQL  167 (355)
T ss_pred             HHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHccCCHhhc
Confidence            67899999999999 4331     02345667788889999999988873211       1111    12222111   0


Q ss_pred             -EEEEeeec----CCCCcccch----hhHHHHHHH-HHHHhhcCCCCeEEEeCCCCcccHHHH-HHcCCCEEEEcccccC
Q 029661          100 -VLIMSVNP----GFGGQSFIE----SQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFG  168 (190)
Q Consensus       100 -i~~m~v~p----G~~gq~~~~----~~~~ki~~~-~~~~~~~~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~~  168 (190)
                       =++.+.+|    |++|+...+    .+.+.|++. .++..+...+++|..+|+++++|+.++ ...++|++-+||+..+
T Consensus       168 ~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~  247 (355)
T PRK14905        168 PHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELIMKPHIDGLFIGRSAWD  247 (355)
T ss_pred             CceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCCHHHHHHHhcCCCCCEEEechhhcc
Confidence             02345566    665665444    333344432 222221123578999999999999876 5677999999999998


Q ss_pred             CCCHHHHHHHHHHh
Q 029661          169 AKDYAEAIKGIKTS  182 (190)
Q Consensus       169 ~~dp~~~~~~l~~~  182 (190)
                      ++++.+.++.+.+.
T Consensus       248 ~~~f~~Ii~~~~~~  261 (355)
T PRK14905        248 AQCFHALIADALKA  261 (355)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88887666665543

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.08  E-value=3.5e-05  Score=63.97  Aligned_cols=96  Identities=17%  Similarity=0.277  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcC--CCCeE
Q 029661           62 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG--VNPWI  138 (190)
Q Consensus        62 ~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~--~~~~i  138 (190)
                      .+.+.++.+|++....-+.+..+ +++.+.+.++ .+|.|++       +.  |.|+.   ++++.+.+.+.+  .++.+
T Consensus       168 ~i~~av~~~r~~~~~~kIeVEv~-~leea~~a~~agaDiI~L-------Dn--~~~e~---l~~~v~~l~~~~~~~~~~l  234 (278)
T PRK08385        168 PLEEAIRRAKEFSVYKVVEVEVE-SLEDALKAAKAGADIIML-------DN--MTPEE---IREVIEALKREGLRERVKI  234 (278)
T ss_pred             HHHHHHHHHHHhCCCCcEEEEeC-CHHHHHHHHHcCcCEEEE-------CC--CCHHH---HHHHHHHHHhcCcCCCEEE
Confidence            36778888888753222444433 4455556555 4898765       22  33444   444444443332  45789


Q ss_pred             EEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661          139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       139 ~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      ++.||||++|+.++.+.|+|++++|+...+++
T Consensus       235 eaSGGI~~~ni~~yA~tGvD~Is~galt~sa~  266 (278)
T PRK08385        235 EVSGGITPENIEEYAKLDVDVISLGALTHSVR  266 (278)
T ss_pred             EEECCCCHHHHHHHHHcCCCEEEeChhhcCCC
Confidence            99999999999999999999999999777653

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=98.07  E-value=0.00034  Score=59.19  Aligned_cols=143  Identities=16%  Similarity=0.235  Sum_probs=93.2

Q ss_pred             CCCcEEEEEeecChHHHHH---HHHHcCCCEEEEcccCC----------C-----cchHHHHHHHHHHh-CCcEEEEEcC
Q 029661           23 TDLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS----------S-----TIHLHRTLNQIKDL-GAKAGVVLNP   83 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~i~---~~~~~Gad~v~vh~e~~----------~-----~~~~~~~i~~i~~~-g~~~g~~i~p   83 (190)
                      .+.|+.+.|.-++|+.+.+   .+.++|+|.|-+|.-+.          +     .+-+.++++.+++. ++.+.+=+..
T Consensus        61 ~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~  140 (319)
T TIGR00737        61 DETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI  140 (319)
T ss_pred             ccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence            3679999999999987754   45678999999985431          0     11234667777663 5666665542


Q ss_pred             C---C---CHHHHHHhhc-ccceEEEEeeecCCCCccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHH-
Q 029661           84 A---T---SLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI-  153 (190)
Q Consensus        84 ~---t---~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~-  153 (190)
                      .   +   ..+.++.+.+ .+|.|.+.+..+   .|.+ .+..++.++++++..     ++++.+.|||+ ++++.++. 
T Consensus       141 g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~---~~~~~~~~~~~~i~~i~~~~-----~ipvi~nGgI~~~~da~~~l~  212 (319)
T TIGR00737       141 GWDDAHINAVEAARIAEDAGAQAVTLHGRTR---AQGYSGEANWDIIARVKQAV-----RIPVIGNGDIFSPEDAKAMLE  212 (319)
T ss_pred             ccCCCcchHHHHHHHHHHhCCCEEEEEcccc---cccCCCchhHHHHHHHHHcC-----CCcEEEeCCCCCHHHHHHHHH
Confidence            1   1   1233333333 378887654332   1111 133466677776654     37899999998 78999888 


Q ss_pred             HcCCCEEEEcccccCCCCHH
Q 029661          154 EAGANALVAGSAVFGAKDYA  173 (190)
Q Consensus       154 ~aGad~~VvGsaI~~~~dp~  173 (190)
                      ..|||.+.+||+++..+..-
T Consensus       213 ~~gad~VmigR~~l~~P~l~  232 (319)
T TIGR00737       213 TTGCDGVMIGRGALGNPWLF  232 (319)
T ss_pred             hhCCCEEEEChhhhhCChHH
Confidence            68999999999998766543

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.07  E-value=2.2e-05  Score=65.21  Aligned_cols=91  Identities=14%  Similarity=0.279  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHHhC--CcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661           62 HLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI  138 (190)
Q Consensus        62 ~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i  138 (190)
                      .+...++.+|+..  .++++.+.  | .+.+.+.++ .+|+|++   .      .|.++   .++++.++.+   .+.++
T Consensus       175 ~v~~av~~~r~~~~~~~I~VEv~--t-leea~eA~~~gaD~I~L---D------~~~~e---~l~~~v~~~~---~~i~l  236 (277)
T PRK05742        175 GIAQAVAAAHRIAPGKPVEVEVE--S-LDELRQALAAGADIVML---D------ELSLD---DMREAVRLTA---GRAKL  236 (277)
T ss_pred             CHHHHHHHHHHhCCCCeEEEEeC--C-HHHHHHHHHcCCCEEEE---C------CCCHH---HHHHHHHHhC---CCCcE
Confidence            3566778888764  55666554  3 555555444 4899965   1      23334   3454444442   24789


Q ss_pred             EEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661          139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       139 ~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      .+.||||++|++++.+.|+|++.+|+...+++
T Consensus       237 eAsGGIt~~ni~~~a~tGvD~Isvg~lt~s~~  268 (277)
T PRK05742        237 EASGGINESTLRVIAETGVDYISIGAMTKDVK  268 (277)
T ss_pred             EEECCCCHHHHHHHHHcCCCEEEEChhhcCCc
Confidence            99999999999999999999999999877764

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=98.05  E-value=0.00025  Score=59.96  Aligned_cols=145  Identities=13%  Similarity=0.145  Sum_probs=95.9

Q ss_pred             HHHHhccC-CCCcEEEEEeec--Ch--HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661           15 VVDALRPV-TDLPLDVHLMIV--EP--EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA   89 (190)
Q Consensus        15 ~v~~i~~~-~~~~i~~hlmv~--dp--~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~   89 (190)
                      .++++|+. +++|+-+-|+..  +|  .+.++.+.+.++..|+++.-.     +.. ++.+++.|+++...+   ++++.
T Consensus        45 ~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~-----P~~-~~~lk~~Gi~v~~~v---~s~~~  115 (320)
T cd04743          45 LLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGR-----PDQ-ARALEAIGISTYLHV---PSPGL  115 (320)
T ss_pred             HHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCC-----hHH-HHHHHHCCCEEEEEe---CCHHH
Confidence            34455664 789999999764  33  356788899999999998642     333 588999999987555   35555


Q ss_pred             HHHhhc-ccceEEEEeeecCCC-CcccchhhHHHHHHHHHHHh-----hcCCCCeEEEeCCCC-cccHHHHHHcCC----
Q 029661           90 IECVLD-VVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCL-----EKGVNPWIEVDGGVG-PKNAYKVIEAGA----  157 (190)
Q Consensus        90 ~~~~~~-~~d~i~~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~-----~~~~~~~i~vdGGI~-~e~~~~~~~aGa----  157 (190)
                      .+...+ .+|.|++-+.+.|.- |.   -.++..+.++.+.+.     ....++++.+.|||. -..+..+...||    
T Consensus       116 A~~a~~~GaD~vVaqG~EAGGH~G~---~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~  192 (320)
T cd04743         116 LKQFLENGARKFIFEGRECGGHVGP---RSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAE  192 (320)
T ss_pred             HHHHHHcCCCEEEEecCcCcCCCCC---CCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccc
Confidence            555554 499999999887643 31   111222233222221     112358899999998 466677777887    


Q ss_pred             ----CEEEEcccc-cCCCC
Q 029661          158 ----NALVAGSAV-FGAKD  171 (190)
Q Consensus       158 ----d~~VvGsaI-~~~~d  171 (190)
                          +.+.+||.. +..+.
T Consensus       193 ~Ga~~GV~mGTrFl~t~Es  211 (320)
T cd04743         193 RGAKVGVLMGTAYLFTEEA  211 (320)
T ss_pred             cccccEEEEccHHhcchhh
Confidence                899999874 44343

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=98.03  E-value=4.7e-05  Score=61.23  Aligned_cols=134  Identities=18%  Similarity=0.162  Sum_probs=81.3

Q ss_pred             HHHHHHc-CCCEEEEcccCCC---cchHHHHHHHHHH---hCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCC
Q 029661           40 VPDFIKA-GADIVSVHCEQSS---TIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGG  111 (190)
Q Consensus        40 i~~~~~~-Gad~v~vh~e~~~---~~~~~~~i~~i~~---~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~g  111 (190)
                      .+.+.++ |-|||=+-.-..+   ..++.+++++++.   .|..+-.-++++  .-..+++.+ .+..|+-++...|. |
T Consensus        82 A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D--~v~akrL~d~GcaavMPlgsPIGS-g  158 (247)
T PF05690_consen   82 ARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDD--PVLAKRLEDAGCAAVMPLGSPIGS-G  158 (247)
T ss_dssp             HHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEBEEBSSSTTT--
T ss_pred             HHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCC--HHHHHHHHHCCCCEEEeccccccc-C
Confidence            4445666 6788877432101   1345667776665   688777777652  223344333 25666666666674 4


Q ss_pred             cccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          112 QSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       112 q~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      |-.. +.   .|+.+++..     ++++.||+||. +.++.+..+.|+|.+-+-|+|.++.||...++.++..++
T Consensus       159 ~Gi~n~~---~l~~i~~~~-----~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~  225 (247)
T PF05690_consen  159 RGIQNPY---NLRIIIERA-----DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE  225 (247)
T ss_dssp             --SSTHH---HHHHHHHHG-----SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred             cCCCCHH---HHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence            4332 33   345555443     47899999999 799999999999999999999999999999999987553

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=98.03  E-value=0.00049  Score=58.38  Aligned_cols=141  Identities=16%  Similarity=0.222  Sum_probs=91.2

Q ss_pred             CcEEEEEeecChHHHHH---HHHHcCCCEEEEcccCCC---------------cchHHHHHHHHHHh-CCcEEEEEc---
Q 029661           25 LPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQSS---------------TIHLHRTLNQIKDL-GAKAGVVLN---   82 (190)
Q Consensus        25 ~~i~~hlmv~dp~~~i~---~~~~~Gad~v~vh~e~~~---------------~~~~~~~i~~i~~~-g~~~g~~i~---   82 (190)
                      .++.+.+.-+||+.+.+   .+.+.|+|.|-+..-+..               .+-+.++++.+++. ++.+++=+.   
T Consensus        65 ~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~  144 (321)
T PRK10415         65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGW  144 (321)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccc
Confidence            57789999999988744   346789999999755410               12355667777653 556666553   


Q ss_pred             -CCC-CHHHHHHhhc--ccceEEEEeeecCCCCcccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH-c
Q 029661           83 -PAT-SLSAIECVLD--VVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE-A  155 (190)
Q Consensus        83 -p~t-~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~-a  155 (190)
                       ++. ....+.+.++  .+|.|.+.+   ....|.+. +..++.++++++..     +++|..-|||+ ++++.++.+ .
T Consensus       145 ~~~~~~~~~~a~~le~~G~d~i~vh~---rt~~~~~~G~a~~~~i~~ik~~~-----~iPVI~nGgI~s~~da~~~l~~~  216 (321)
T PRK10415        145 APEHRNCVEIAQLAEDCGIQALTIHG---RTRACLFNGEAEYDSIRAVKQKV-----SIPVIANGDITDPLKARAVLDYT  216 (321)
T ss_pred             cCCcchHHHHHHHHHHhCCCEEEEec---CccccccCCCcChHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHhcc
Confidence             221 2222323332  278886543   33223222 23466677776643     47899999996 899999986 6


Q ss_pred             CCCEEEEcccccCCCCHH
Q 029661          156 GANALVAGSAVFGAKDYA  173 (190)
Q Consensus       156 Gad~~VvGsaI~~~~dp~  173 (190)
                      |+|++.+||+++..+..-
T Consensus       217 gadgVmiGR~~l~nP~if  234 (321)
T PRK10415        217 GADALMIGRAAQGRPWIF  234 (321)
T ss_pred             CCCEEEEChHhhcCChHH
Confidence            999999999998765433

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=98.02  E-value=9.8e-05  Score=58.54  Aligned_cols=135  Identities=20%  Similarity=0.283  Sum_probs=74.3

Q ss_pred             HHHHHHhccCCCCcEEEEEeecC-h-------H------HHHHHHHHcCCCEEEEcccCCC--c--chHHHHHHHHHHhC
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVE-P-------E------QRVPDFIKAGADIVSVHCEQSS--T--IHLHRTLNQIKDLG   74 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~d-p-------~------~~i~~~~~~Gad~v~vh~e~~~--~--~~~~~~i~~i~~~g   74 (190)
                      +..++.+++..++|+.+  |+.. .       .      +-++.+.++|+|++.|..-..+  .  +...++++.++  |
T Consensus        39 ~g~i~~~~~~~~ipv~v--MIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~  114 (201)
T PF03932_consen   39 LGLIRQAREAVDIPVHV--MIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG--G  114 (201)
T ss_dssp             HHHHHHHHHHTTSEEEE--E--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT--T
T ss_pred             HHHHHHHHhhcCCceEE--EECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC--C
Confidence            46788888767777666  7752 1       1      2356789999999999864311  1  12334444443  5


Q ss_pred             CcEEE--EEcCC-CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHH
Q 029661           75 AKAGV--VLNPA-TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY  150 (190)
Q Consensus        75 ~~~g~--~i~p~-t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~  150 (190)
                      +.+-+  ++... .+.+.++.+++. ++.|+-    -|  |..-..+.++.|+++.+..   +..+.|.+.||||++|++
T Consensus       115 ~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLT----SG--g~~~a~~g~~~L~~lv~~a---~~~i~Im~GgGv~~~nv~  185 (201)
T PF03932_consen  115 MPVTFHRAFDEVPDPEEALEQLIELGFDRVLT----SG--GAPTALEGIENLKELVEQA---KGRIEIMPGGGVRAENVP  185 (201)
T ss_dssp             SEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEE----ST--TSSSTTTCHHHHHHHHHHH---TTSSEEEEESS--TTTHH
T ss_pred             CeEEEeCcHHHhCCHHHHHHHHHhcCCCEEEC----CC--CCCCHHHHHHHHHHHHHHc---CCCcEEEecCCCCHHHHH
Confidence            55544  22222 234455555443 777762    12  2222334456666555443   345789999999999999


Q ss_pred             HHHH-cCCCEE
Q 029661          151 KVIE-AGANAL  160 (190)
Q Consensus       151 ~~~~-aGad~~  160 (190)
                      .+.+ .|+.-+
T Consensus       186 ~l~~~tg~~~~  196 (201)
T PF03932_consen  186 ELVEETGVREI  196 (201)
T ss_dssp             HHHHHHT-SEE
T ss_pred             HHHHhhCCeEE
Confidence            9987 888765

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=98.02  E-value=1.9e-05  Score=64.51  Aligned_cols=153  Identities=21%  Similarity=0.266  Sum_probs=100.5

Q ss_pred             HHHHhcc-C-CCCcEEEEEeecC---h-------HHHHHHHHHcCCCEEEEcccCCC------cchHHHHHHHHHHhCCc
Q 029661           15 VVDALRP-V-TDLPLDVHLMIVE---P-------EQRVPDFIKAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAK   76 (190)
Q Consensus        15 ~v~~i~~-~-~~~~i~~hlmv~d---p-------~~~i~~~~~~Gad~v~vh~e~~~------~~~~~~~i~~i~~~g~~   76 (190)
                      +++.... + .++|+.+||=-++   |       -..++.+..+|||.|.+|.--++      .+.+.++.+.++++|+-
T Consensus        66 ~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp  145 (265)
T COG1830          66 IARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMP  145 (265)
T ss_pred             HHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCc
Confidence            4444443 3 3789999886652   1       12478889999999999843222      23466778888999999


Q ss_pred             EEEEEcCCCCHH-----HHHHhhc---------ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC
Q 029661           77 AGVVLNPATSLS-----AIECVLD---------VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG  142 (190)
Q Consensus        77 ~g~~i~p~t~~~-----~~~~~~~---------~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG  142 (190)
                      +.+..-|-.+.-     .-..+..         .+|.|=.  -+||         ..+..+++-+.++     +++.+.|
T Consensus       146 ~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~--~ytg---------~~e~F~~vv~~~~-----vpVviaG  209 (265)
T COG1830         146 LVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT--KYTG---------DPESFRRVVAACG-----VPVVIAG  209 (265)
T ss_pred             eEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEee--cCCC---------ChHHHHHHHHhCC-----CCEEEeC
Confidence            988776654421     0011111         1455521  1222         1134455555443     6888999


Q ss_pred             CCCcc-------cHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhh
Q 029661          143 GVGPK-------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK  183 (190)
Q Consensus       143 GI~~e-------~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~  183 (190)
                      |=+.+       -...++++||-++++||.||++++|+..++.+....
T Consensus       210 G~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Iv  257 (265)
T COG1830         210 GPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIV  257 (265)
T ss_pred             CCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHh
Confidence            98873       455778899999999999999999999888887653

>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate

Probab=97.99  E-value=0.00013  Score=57.67  Aligned_cols=148  Identities=20%  Similarity=0.252  Sum_probs=88.1

Q ss_pred             CCHHHHHHhccCCCCcEEEEEeec-ChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHH-
Q 029661           11 IGPLVVDALRPVTDLPLDVHLMIV-EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-   88 (190)
Q Consensus        11 ~G~~~v~~i~~~~~~~i~~hlmv~-dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~-   88 (190)
                      ..++..++|.+......+. ..+. ++.+..+.+.+++.|+|-+|...     ..++++.++ .+.++.-++.+....+ 
T Consensus        35 v~~~~a~~l~~~~~~~~Vg-Vf~~~~~~~I~~~~~~~~ld~vQLHG~e-----~~e~~~~l~-~~~~vi~~~~v~~~~~~  107 (197)
T PF00697_consen   35 VSPDQARELVSAVPPKIVG-VFVNQSPEEILEIVEELGLDVVQLHGDE-----SPEYIKLLR-AGLPVIKAIHVDKDIDL  107 (197)
T ss_dssp             --HHHHHHHHCCSSSSEEE-EESSS-HHHHHHHHHHCTESEEEE-SGG------HHHHHHHH-TTSEEEEEEEESSCHSC
T ss_pred             cCHHHHHHHHHhcCCCEEE-EEcCCCHHHHHHHHHHcCCCEEEECCCC-----CHHHHHHhh-cCceEEEEEEeCCccch
Confidence            4677888887653322333 3444 55667788899999999999863     334555555 5777777777665443 


Q ss_pred             --HHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHH-cCCCEEEEccc
Q 029661           89 --AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSA  165 (190)
Q Consensus        89 --~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~-aGad~~VvGsa  165 (190)
                        .+..+ ..+|++++= ...|.+|+.|....+.++.+...       ..++.+.||+|++|+.++++ .++.++=+-|.
T Consensus       108 ~~~~~~~-~~~d~~LlD-~~~GgtG~~~dw~~~~~~~~~~~-------~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsSG  178 (197)
T PF00697_consen  108 LDYLERY-ESVDYFLLD-SGSGGTGKTFDWSLLKKIVESYS-------PKPVILAGGLNPENVREAIRQVRPYGVDVSSG  178 (197)
T ss_dssp             CHHCHCS-TT-SEEEEE-SSSTSSSS---GGGGCCCHHT-G-------TSTEEEESS--TTTHHHHHHHC--SEEEESGG
T ss_pred             HHHHHhc-ccccEEeEc-cCCCcCCcccCHHHhhhhhhhcc-------cCcEEEEcCCChHHHHHHHHhcCceEEEeCCc
Confidence              33332 234888764 33466788888777665544221       25688999999999999988 88888888887


Q ss_pred             ccCC---CCHHH
Q 029661          166 VFGA---KDYAE  174 (190)
Q Consensus       166 I~~~---~dp~~  174 (190)
                      +=.+   .|++.
T Consensus       179 vE~~pG~KD~~k  190 (197)
T PF00697_consen  179 VETSPGVKDPEK  190 (197)
T ss_dssp             GEEETTEE-HHH
T ss_pred             cccCCCCCCHHH
Confidence            7443   35543

In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.

>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]

Probab=97.99  E-value=8.9e-05  Score=58.75  Aligned_cols=159  Identities=18%  Similarity=0.276  Sum_probs=99.7

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHH--HHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPD--FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA   89 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~--~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~   89 (190)
                      -|..|++|++...+|+.+..-   .+.|++.  +-..|.|+|-   |+. .-++......|.+++.++=+.+.-..--|.
T Consensus        66 DP~mIKei~~aVsiPVMAk~R---iGHFVEAQIlE~l~vDYiD---ESE-vlt~AD~~hhI~KhnFkvPFvCG~rdlGEA  138 (296)
T KOG1606|consen   66 DPRMIKEIKNAVSIPVMAKVR---IGHFVEAQILEALGVDYID---ESE-VLTPADWDHHIEKHNFKVPFVCGCRDLGEA  138 (296)
T ss_pred             CHHHHHHHHHhccchhhhhhh---hhhhhHHHHHHHhccCccc---hhh-hcccccccchhhhhcCcCceeeccccHHHH
Confidence            578999999877778777443   3447653  5667888873   321 234555667788888888777766555677


Q ss_pred             HHHhhcccceEEEEeeecCCCCcccchhhHHHHHH-------HHHHH---------------------hhcCCCCeEE--
Q 029661           90 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD-------LRRMC---------------------LEKGVNPWIE--  139 (190)
Q Consensus        90 ~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~-------~~~~~---------------------~~~~~~~~i~--  139 (190)
                      ++++.+.+-.|-.- -+.|++.   ..++.+.++.       ++++-                     .+.+ .+++.  
T Consensus       139 LRRI~EGAAMIRtk-GeagTG~---v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~G-rlPVV~F  213 (296)
T KOG1606|consen  139 LRRIREGAAMIRTK-GEAGTGD---VSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQLG-RLPVVNF  213 (296)
T ss_pred             HHHHhhchhhheec-cccCCCc---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHcC-CCceEEe
Confidence            77776665444211 1223322   2222222221       11110                     0111 12222  


Q ss_pred             EeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661          140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS  182 (190)
Q Consensus       140 vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~  182 (190)
                      ..||+. |.....+.+.|.|++-+||.||++.||...++.+-+.
T Consensus       214 AaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqA  257 (296)
T KOG1606|consen  214 AAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQA  257 (296)
T ss_pred             cccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHHHHH
Confidence            678877 8899999999999999999999999999888877654

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)

Probab=97.96  E-value=0.00011  Score=61.67  Aligned_cols=100  Identities=14%  Similarity=0.185  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHh----CCcEEEEEcCCCCHHHHHHhhc-------ccceEEEEee--ecCCCCcccchhhHHHHHHHHHH
Q 029661           62 HLHRTLNQIKDL----GAKAGVVLNPATSLSAIECVLD-------VVDLVLIMSV--NPGFGGQSFIESQVKKISDLRRM  128 (190)
Q Consensus        62 ~~~~~i~~i~~~----g~~~g~~i~p~t~~~~~~~~~~-------~~d~i~~m~v--~pG~~gq~~~~~~~~ki~~~~~~  128 (190)
                      .+.+.++.+|++    +...-+.+..+| ++.+.+.++       .+|.|++=-.  .|.-     .....+.+++..++
T Consensus       185 ~i~~av~~~r~~~~~~~~~~kIeVEv~t-leea~ea~~~~~~~~agaDiImLDnm~~~~~~-----~~~~~e~l~~av~~  258 (308)
T PLN02716        185 GITNAVQSADKYLEEKGLSMKIEVETRT-LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLEN-----GDVDVSMLKEAVEL  258 (308)
T ss_pred             CHHHHHHHHHHhhhhcCCCeeEEEEECC-HHHHHHHHHhcccccCCCCEEEeCCCcccccc-----cCCCHHHHHHHHHh
Confidence            467788888872    121224444444 555666555       3888876111  1211     11245556666665


Q ss_pred             HhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661          129 CLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       129 ~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      +++   ..++++.||||++|+.++.+.|+|++++|+--.+++
T Consensus       259 ~~~---~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galthsa~  297 (308)
T PLN02716        259 ING---RFETEASGNVTLDTVHKIGQTGVTYISSGALTHSVK  297 (308)
T ss_pred             hCC---CceEEEECCCCHHHHHHHHHcCCCEEEeCccccCCC
Confidence            543   357999999999999999999999999998666543

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=97.95  E-value=0.00027  Score=60.33  Aligned_cols=162  Identities=21%  Similarity=0.242  Sum_probs=102.3

Q ss_pred             cccCcCCC---CHH-HHHHhccC-CCCcEEEEEeec-------ChHHHHHHHHHcC--CCEEEEcccCC---------Cc
Q 029661            4 RFVPNITI---GPL-VVDALRPV-TDLPLDVHLMIV-------EPEQRVPDFIKAG--ADIVSVHCEQS---------ST   60 (190)
Q Consensus         4 ~fvpn~~~---G~~-~v~~i~~~-~~~~i~~hlmv~-------dp~~~i~~~~~~G--ad~v~vh~e~~---------~~   60 (190)
                      -+.+.+.|   |.+ +++++++. .+.++-+-+..+       .+++|.+.+..++  ||++.+-..+.         ..
T Consensus       109 ~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~  188 (335)
T TIGR01036       109 ALINRMGFNNHGADVLVERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYK  188 (335)
T ss_pred             ccccCCCCCChhHHHHHHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCH
Confidence            35566666   443 35556553 456777765433       3578888777777  99998843220         01


Q ss_pred             chHHHHHHHHHHh-C-------CcEEEEEcCCCCHHHHHHhhc-----ccceEEEEee---------------ecCCCCc
Q 029661           61 IHLHRTLNQIKDL-G-------AKAGVVLNPATSLSAIECVLD-----VVDLVLIMSV---------------NPGFGGQ  112 (190)
Q Consensus        61 ~~~~~~i~~i~~~-g-------~~~g~~i~p~t~~~~~~~~~~-----~~d~i~~m~v---------------~pG~~gq  112 (190)
                      +...++++.+++. .       +.+.+=++|+.+.+.+..+++     .+|-|.+.-.               .-|.+|.
T Consensus       189 ~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~  268 (335)
T TIGR01036       189 AELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGK  268 (335)
T ss_pred             HHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCH
Confidence            2345666666553 1       556666888876333333332     2566553211               1234466


Q ss_pred             ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661          113 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       113 ~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      ...|..++.++++++..+   .+++|..-|||. .+++.+++.+|||.+-+||+++.
T Consensus       269 ~i~p~al~~v~~~~~~~~---~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~  322 (335)
T TIGR01036       269 PLQDKSTEIIRRLYAELQ---GRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY  322 (335)
T ss_pred             HHHHHHHHHHHHHHHHhC---CCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence            666777777777776543   247898999999 78999999999999999999876

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=97.95  E-value=0.0003  Score=57.35  Aligned_cols=144  Identities=19%  Similarity=0.247  Sum_probs=96.1

Q ss_pred             CcCCCCHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHH
Q 029661            7 PNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIK   71 (190)
Q Consensus         7 pn~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~   71 (190)
                      |.+.-..+.++++++. ++.++-+  ++.+-.+.++.+.++|++.|.+.....              ..+...+.++.++
T Consensus        48 p~~~~~~~~i~~l~~~~~~~~~~~--l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~  125 (265)
T cd03174          48 PQMEDDWEVLRAIRKLVPNVKLQA--LVRNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK  125 (265)
T ss_pred             ccCCCHHHHHHHHHhccCCcEEEE--EccCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            4445566788888875 3555555  444446689999999999999976541              1245678888899


Q ss_pred             HhCCcEEEEEcCC----CCHHHHHHhhc----c-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC
Q 029661           72 DLGAKAGVVLNPA----TSLSAIECVLD----V-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG  142 (190)
Q Consensus        72 ~~g~~~g~~i~p~----t~~~~~~~~~~----~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG  142 (190)
                      ++|+++.+.+...    ++.+.+.+++.    . +|.|.+    +.+.|...+.+..+.++.+++..++    .++.+=+
T Consensus       126 ~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~v~~li~~l~~~~~~----~~~~~H~  197 (265)
T cd03174         126 EAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISL----KDTVGLATPEEVAELVKALREALPD----VPLGLHT  197 (265)
T ss_pred             HCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEe----chhcCCcCHHHHHHHHHHHHHhCCC----CeEEEEe
Confidence            9999998877433    33444444332    2 677654    2334554455566667777776542    5666655


Q ss_pred             ----CCCcccHHHHHHcCCCEE
Q 029661          143 ----GVGPKNAYKVIEAGANAL  160 (190)
Q Consensus       143 ----GI~~e~~~~~~~aGad~~  160 (190)
                          |....|.-..+++||+.+
T Consensus       198 Hn~~gla~an~laA~~aG~~~i  219 (265)
T cd03174         198 HNTLGLAVANSLAALEAGADRV  219 (265)
T ss_pred             CCCCChHHHHHHHHHHcCCCEE
Confidence                666678888899999976

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.92  E-value=0.00032  Score=62.68  Aligned_cols=137  Identities=20%  Similarity=0.307  Sum_probs=85.1

Q ss_pred             EEeecCh--HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeee
Q 029661           30 HLMIVEP--EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVN  106 (190)
Q Consensus        30 hlmv~dp--~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~  106 (190)
                      ..|..+|  .+.++.+.++|+|.+.+-...+........++.+++..-.+-+.+..-...+..+.+.+ .+|.|-+ +.-
T Consensus       221 aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~v-g~g  299 (486)
T PRK05567        221 AAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKV-GIG  299 (486)
T ss_pred             eecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEE-CCC
Confidence            3444444  44577899999998876221111335667788888764222222232334444555554 4888864 333


Q ss_pred             cCC--CCcc---cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          107 PGF--GGQS---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       107 pG~--~gq~---~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      ||.  .++.   +....++-+.++++...+  .++++.+||||+ +..+.++..+|||.+.+||+|.+.
T Consensus       300 ~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~--~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~  366 (486)
T PRK05567        300 PGSICTTRIVAGVGVPQITAIADAAEAAKK--YGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGT  366 (486)
T ss_pred             CCccccceeecCCCcCHHHHHHHHHHHhcc--CCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcccccc
Confidence            441  1221   222345566666665432  347899999999 789999999999999999999875

>PLN02429 triosephosphate isomerase

Probab=97.91  E-value=0.00038  Score=58.69  Aligned_cols=138  Identities=15%  Similarity=0.248  Sum_probs=86.2

Q ss_pred             HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCC-------HH----HHHHhhcccce--E
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LS----AIECVLDVVDL--V  100 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-------~~----~~~~~~~~~d~--i  100 (190)
                      .+.+.++|++++++ |.|-     ..++.+.+-++.+.++|+.+.+.+.-...       .+    .++..++.++.  =
T Consensus       140 a~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~~~  219 (315)
T PLN02429        140 VEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDN  219 (315)
T ss_pred             HHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCcccc
Confidence            67899999999999 4331     01344555555699999999888873221       11    23333433321  1


Q ss_pred             EEEeeec----CCCCcccchhhHHHH-HHHHHHHhh-----cCCCCeEEEeCCCCcccHHHH-HHcCCCEEEEcccccCC
Q 029661          101 LIMSVNP----GFGGQSFIESQVKKI-SDLRRMCLE-----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFGA  169 (190)
Q Consensus       101 ~~m~v~p----G~~gq~~~~~~~~ki-~~~~~~~~~-----~~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~~~  169 (190)
                      ++..-+|    | +|+.-.|+-.+.+ ..+|+.+.+     ...+++|..+|+|+++|+.++ .+.++|++-+|++..++
T Consensus       220 ivIAYEPvWAIG-TGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~diDG~LVGgASL~~  298 (315)
T PLN02429        220 IVVAYEPVWAIG-TGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKG  298 (315)
T ss_pred             eEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCCCCEEEeecceecH
Confidence            2345566    5 3544444443332 233433322     124578999999999999866 47889999999999887


Q ss_pred             CCHHHHHHH
Q 029661          170 KDYAEAIKG  178 (190)
Q Consensus       170 ~dp~~~~~~  178 (190)
                      +++.+-++.
T Consensus       299 ~~F~~Ii~~  307 (315)
T PLN02429        299 PEFATIVNS  307 (315)
T ss_pred             HHHHHHHHH
Confidence            777665554

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=97.89  E-value=5.4e-05  Score=62.21  Aligned_cols=92  Identities=20%  Similarity=0.225  Sum_probs=60.5

Q ss_pred             CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEE
Q 029661           83 PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV  161 (190)
Q Consensus        83 p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~V  161 (190)
                      ...|++.++.|.+. +..+-+.-...   |..-   -.+-|+++++ .     +.+|++.|||+.++++.+.++|||-+|
T Consensus        42 ~~dP~~~A~~~~~~Ga~~lHvVDLdg---g~~~---n~~~i~~i~~-~-----~~~vqvGGGIR~e~i~~~l~~Ga~rVi  109 (262)
T PLN02446         42 DKSAAEFAEMYKRDGLTGGHVIMLGA---DDAS---LAAALEALRA-Y-----PGGLQVGGGVNSENAMSYLDAGASHVI  109 (262)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCC---CCcc---cHHHHHHHHh-C-----CCCEEEeCCccHHHHHHHHHcCCCEEE
Confidence            35678877777654 66665533332   2222   2444555555 3     268999999999999999999999999


Q ss_pred             EcccccCCC--CHHHHHHHHHHhhcccc
Q 029661          162 AGSAVFGAK--DYAEAIKGIKTSKRPQA  187 (190)
Q Consensus       162 vGsaI~~~~--dp~~~~~~l~~~~~~~~  187 (190)
                      +||+.++.+  ||. .++++-+...+++
T Consensus       110 igT~Av~~~~~~p~-~v~~~~~~~G~~~  136 (262)
T PLN02446        110 VTSYVFRDGQIDLE-RLKDLVRLVGKQR  136 (262)
T ss_pred             EchHHHhCCCCCHH-HHHHHHHHhCCCC
Confidence            999988841  353 4444444444433

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=97.87  E-value=0.00047  Score=59.06  Aligned_cols=138  Identities=20%  Similarity=0.310  Sum_probs=83.3

Q ss_pred             cEEEEEeecC-hHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEE-EEEcCCCCHHHHHHhhc-ccceEEE
Q 029661           26 PLDVHLMIVE-PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAG-VVLNPATSLSAIECVLD-VVDLVLI  102 (190)
Q Consensus        26 ~i~~hlmv~d-p~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g-~~i~p~t~~~~~~~~~~-~~d~i~~  102 (190)
                      .+-+-+-+.+ -.+.++.+.++|+|.+.+..-.+..+...+.++.+|+.--++- ++=|..|. +-.+.+++ .+|.|-+
T Consensus        98 ~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~-e~a~~L~~aGad~vkV  176 (352)
T PF00478_consen   98 LVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTY-EGAKDLIDAGADAVKV  176 (352)
T ss_dssp             CEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SH-HHHHHHHHTT-SEEEE
T ss_pred             eEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCH-HHHHHHHHcCCCEEEE
Confidence            3344333332 3456788999999999995443334566778888888644443 34444444 44555554 4888765


Q ss_pred             EeeecCCC-------CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          103 MSVNPGFG-------GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       103 m~v~pG~~-------gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                       ++=||.-       |-- .| .+.-+.+..+...+  +..+|..||||+ ..++.+.+.+|||.+-+||.+-..
T Consensus       177 -GiGpGsiCtTr~v~GvG-~P-Q~tAv~~~a~~a~~--~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt  246 (352)
T PF00478_consen  177 -GIGPGSICTTREVTGVG-VP-QLTAVYECAEAARD--YGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGT  246 (352)
T ss_dssp             -SSSSSTTBHHHHHHSBS-CT-HHHHHHHHHHHHHC--TTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTB
T ss_pred             -eccCCcccccccccccC-Cc-HHHHHHHHHHHhhh--ccCceeecCCcCcccceeeeeeecccceeechhhccC
Confidence             4444421       100 12 23334555554433  458999999999 689999999999999999988764

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.87  E-value=0.00046  Score=61.91  Aligned_cols=130  Identities=22%  Similarity=0.301  Sum_probs=79.3

Q ss_pred             HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh-CCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCC--C-C-
Q 029661           38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF--G-G-  111 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~-g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~--~-g-  111 (190)
                      ..++.+.++|+|.+.+-.-.+......+.++++|+. +..+-+....-...+..+.+++ .+|.|.+ ++.||.  . . 
T Consensus       245 ~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~v-g~g~Gs~c~tr~  323 (502)
T PRK07107        245 ERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKV-GIGGGSICITRE  323 (502)
T ss_pred             HHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEE-CCCCCcCccccc
Confidence            456778999999998742111112345678888874 3223332221223344555554 5898876 888881  1 1 


Q ss_pred             cc-cchhhHHHHHHHHH----HHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661          112 QS-FIESQVKKISDLRR----MCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       112 q~-~~~~~~~ki~~~~~----~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      |. .....+.-+.++.+    +..+.+.+.+|..||||+ ..++.+++.+|||.+-+||.+-.
T Consensus       324 ~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag  386 (502)
T PRK07107        324 QKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFAR  386 (502)
T ss_pred             ccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhc
Confidence            11 11122333333333    334445457899999999 57888899999999999998865

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=97.87  E-value=0.00096  Score=56.87  Aligned_cols=145  Identities=14%  Similarity=0.189  Sum_probs=91.0

Q ss_pred             CCCcEEEEEeecChHHHHHH---HHHcCCCEEEEcccCC---------------CcchHHHHHHHHHHh-CCcEEEEEcC
Q 029661           23 TDLPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNP   83 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~i~~---~~~~Gad~v~vh~e~~---------------~~~~~~~~i~~i~~~-g~~~g~~i~p   83 (190)
                      .+.|+.+.|.-.||+.+.+.   +.++|+|+|=+|.-+.               ..+-+.++++.+++. ++.+.+=+..
T Consensus        63 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~  142 (333)
T PRK11815         63 EEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRI  142 (333)
T ss_pred             CCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEe
Confidence            45799999999999887543   5678999999985431               012245777777774 5554442221


Q ss_pred             C----CCHHHH---HHhhc--ccceEEEEeeec---CCCCc---ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cc
Q 029661           84 A----TSLSAI---ECVLD--VVDLVLIMSVNP---GFGGQ---SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PK  147 (190)
Q Consensus        84 ~----t~~~~~---~~~~~--~~d~i~~m~v~p---G~~gq---~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e  147 (190)
                      .    .+.+..   .+.+.  .+|.+.+.+...   |+.|.   ...|..++.++++++..    .++++..-|||+ ++
T Consensus       143 g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~----~~iPVI~nGgI~s~e  218 (333)
T PRK11815        143 GIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF----PHLTIEINGGIKTLE  218 (333)
T ss_pred             eeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC----CCCeEEEECCcCCHH
Confidence            1    112222   22222  278886644321   22221   12234466677776543    247899999997 79


Q ss_pred             cHHHHHHcCCCEEEEcccccCCCCH
Q 029661          148 NAYKVIEAGANALVAGSAVFGAKDY  172 (190)
Q Consensus       148 ~~~~~~~aGad~~VvGsaI~~~~dp  172 (190)
                      ++.++.+ |+|.+.+|++++..+..
T Consensus       219 da~~~l~-~aDgVmIGRa~l~nP~~  242 (333)
T PRK11815        219 EAKEHLQ-HVDGVMIGRAAYHNPYL  242 (333)
T ss_pred             HHHHHHh-cCCEEEEcHHHHhCCHH
Confidence            9999886 79999999999876533

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.86  E-value=0.00016  Score=60.42  Aligned_cols=136  Identities=20%  Similarity=0.234  Sum_probs=83.0

Q ss_pred             HHHHhccCCCCcEEEEEeecChH-HH-HHHHHHcCC---------CEEEE---cccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPE-QR-VPDFIKAGA---------DIVSV---HCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp~-~~-i~~~~~~Ga---------d~v~v---h~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      +++.+. .++..+-.-=|+. |+ +. .+.+..+|-         |.|.+   |...  ...+.+.++.+|++....-+.
T Consensus       134 ~V~~~~-~~~~~I~dTRKT~-PGlR~lekyAV~~GGG~nHR~gLsD~vLIkdNHi~~--~G~i~~av~~~r~~~~~~kIe  209 (294)
T PRK06978        134 YVDRIA-GTRARILDTRKTL-PGLRLAQKYAVRVGGGENQRLALYDGILIKENHIAA--AGGVGAALDAAFALNAGVPVQ  209 (294)
T ss_pred             HHHHhh-CCCcEEEecCCCC-CchhHHHHHHHHhcCCcCcCCCCCceEEEeHHHHHH--hCCHHHHHHHHHHhCCCCcEE
Confidence            444442 2444444433444 64 33 444566653         34554   4332  234778888888864322244


Q ss_pred             EcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCE
Q 029661           81 LNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANA  159 (190)
Q Consensus        81 i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~  159 (190)
                      +..+| ++.+++.++ .+|.|++       +.  |.|+.+   +++.+++++   +..+++.||||++|+.++.+.|+|+
T Consensus       210 VEvet-leea~eA~~aGaDiImL-------Dn--mspe~l---~~av~~~~~---~~~lEaSGGIt~~ni~~yA~tGVD~  273 (294)
T PRK06978        210 IEVET-LAQLETALAHGAQSVLL-------DN--FTLDMM---REAVRVTAG---RAVLEVSGGVNFDTVRAFAETGVDR  273 (294)
T ss_pred             EEcCC-HHHHHHHHHcCCCEEEE-------CC--CCHHHH---HHHHHhhcC---CeEEEEECCCCHHHHHHHHhcCCCE
Confidence            55444 555566555 4898876       22  444444   444444432   4689999999999999999999999


Q ss_pred             EEEcccccCCC
Q 029661          160 LVAGSAVFGAK  170 (190)
Q Consensus       160 ~VvGsaI~~~~  170 (190)
                      +.+|+...+++
T Consensus       274 IS~galthsa~  284 (294)
T PRK06978        274 ISIGALTKDVR  284 (294)
T ss_pred             EEeCccccCCc
Confidence            99998777664

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=97.86  E-value=0.0017  Score=56.41  Aligned_cols=154  Identities=16%  Similarity=0.175  Sum_probs=99.7

Q ss_pred             HHHhcc-CCCCcEEEEEee-cChHHHH---HHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHh-CC
Q 029661           16 VDALRP-VTDLPLDVHLMI-VEPEQRV---PDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDL-GA   75 (190)
Q Consensus        16 v~~i~~-~~~~~i~~hlmv-~dp~~~i---~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~-g~   75 (190)
                      ++.+++ +++.|+.+-+|- .++++|.   +.+.++|||++.+-..+.              ..+.+.++++.+|+. .+
T Consensus       104 i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~i  183 (385)
T PLN02495        104 FKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATV  183 (385)
T ss_pred             HHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcC
Confidence            344443 357899999988 6787664   456788999999843210              112355667777775 45


Q ss_pred             cEEEEEcCCC-CHHHHHHhh-c-ccceEEE-------Eee-----e--c---------CCCCcccchhhHHHHHHHHHHH
Q 029661           76 KAGVVLNPAT-SLSAIECVL-D-VVDLVLI-------MSV-----N--P---------GFGGQSFIESQVKKISDLRRMC  129 (190)
Q Consensus        76 ~~g~~i~p~t-~~~~~~~~~-~-~~d~i~~-------m~v-----~--p---------G~~gq~~~~~~~~ki~~~~~~~  129 (190)
                      .+.+=+.|+. .+..+.+.+ + .+|-|.+       |.+     .  |         |.+|....|..+..+.++++..
T Consensus       184 Pv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~  263 (385)
T PLN02495        184 PVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMM  263 (385)
T ss_pred             ceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence            5556688874 444333322 1 2454432       222     1  1         1234445577777787888776


Q ss_pred             hhc-CCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          130 LEK-GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       130 ~~~-~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      ... ..+++|..-|||. .+.+.+++.+||+.+=++|+++..
T Consensus       264 ~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~  305 (385)
T PLN02495        264 KSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMH  305 (385)
T ss_pred             hhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeec
Confidence            422 2247899999999 799999999999999999998864

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=97.85  E-value=0.00062  Score=58.50  Aligned_cols=150  Identities=17%  Similarity=0.127  Sum_probs=94.1

Q ss_pred             HHHHhccC-CCCcEEEEEeecC-----hHHHHHHHHHcCCCEEEEcccC----C---CcchHH---HHHHHHHHh-CCcE
Q 029661           15 VVDALRPV-TDLPLDVHLMIVE-----PEQRVPDFIKAGADIVSVHCEQ----S---STIHLH---RTLNQIKDL-GAKA   77 (190)
Q Consensus        15 ~v~~i~~~-~~~~i~~hlmv~d-----p~~~i~~~~~~Gad~v~vh~e~----~---~~~~~~---~~i~~i~~~-g~~~   77 (190)
                      ..+.+|+. ++.|+.+-|-+..     ++...+.....+||.+-+|...    .   ...+..   +.++.+++. ++.+
T Consensus       110 ~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPV  189 (352)
T PRK05437        110 SFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPV  189 (352)
T ss_pred             HHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCE
Confidence            34455665 5788888665532     4555566667789999998632    0   112333   667777775 6666


Q ss_pred             EEEEc-CCCCHHHHHHhhc-ccceEEEEeeecCCCC------c-----------ccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661           78 GVVLN-PATSLSAIECVLD-VVDLVLIMSVNPGFGG------Q-----------SFIESQVKKISDLRRMCLEKGVNPWI  138 (190)
Q Consensus        78 g~~i~-p~t~~~~~~~~~~-~~d~i~~m~v~pG~~g------q-----------~~~~~~~~ki~~~~~~~~~~~~~~~i  138 (190)
                      ++=.. ..++.+..+.+.+ .+|.|.+-+ ..|++.      .           .+...+.+.|.++++..    .+++|
T Consensus       190 ivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg-~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~----~~ipv  264 (352)
T PRK05437        190 IVKEVGFGISKETAKRLADAGVKAIDVAG-AGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL----PDLPI  264 (352)
T ss_pred             EEEeCCCCCcHHHHHHHHHcCCCEEEECC-CCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc----CCCeE
Confidence            65333 2345566665544 489988743 223110      0           11222445555555542    24789


Q ss_pred             EEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          139 EVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       139 ~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .++|||+ ...+.+++..|||.+-+|++++.+
T Consensus       265 ia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~  296 (352)
T PRK05437        265 IASGGIRNGLDIAKALALGADAVGMAGPFLKA  296 (352)
T ss_pred             EEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence            9999999 689999999999999999997754

>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase

Probab=97.85  E-value=0.00082  Score=54.26  Aligned_cols=162  Identities=15%  Similarity=0.173  Sum_probs=109.8

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------------CcchHHHHHHHHHHhCCcEEEE
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------------~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      +-++.|++....++..-  .+--.++++.+.+...+.+|+-+|.-             ..+.+..+++.+++.|+++.++
T Consensus        52 ~Dv~~l~~~~~~~lNlE--~a~~~emi~ia~~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLF  129 (237)
T TIGR00559        52 RDVYDLKEALTTPFNIE--MAPTEEMIRIAEEIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLF  129 (237)
T ss_pred             HHHHHHHHHcCCCEEec--cCCCHHHHHHHHHcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEE
Confidence            34566776544455543  22234688999999999999976641             0124788999999999999999


Q ss_pred             EcCCCC-HHHHHHhhcccceEEEEeeecCCCCcccc----hhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHc
Q 029661           81 LNPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSFI----ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA  155 (190)
Q Consensus        81 i~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~~----~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~a  155 (190)
                      +.|+.. ++...++  .+|.|-+.   .|.....|.    ..-++++...-++..+.  .+.+.++-|+|.+|++.+.+.
T Consensus       130 iDP~~~qi~~A~~~--GAd~VELh---TG~YA~a~~~~~~~~el~~i~~aa~~A~~l--GL~VnAGHgLny~Nv~~i~~~  202 (237)
T TIGR00559       130 IDADKDQISAAAEV--GADRIEIH---TGPYANAYNKKEMAEELQRIVKASVHAHSL--GLKVNAGHGLNYHNVKYFAEI  202 (237)
T ss_pred             eCCCHHHHHHHHHh--CcCEEEEe---chhhhcCCCchhHHHHHHHHHHHHHHHHHc--CCEEecCCCCCHHhHHHHHhC
Confidence            998633 2333332  58999763   343322222    22366666666665544  467889999999999988665


Q ss_pred             -C-CCEEEEcccccCC---CCHHHHHHHHHHhhc
Q 029661          156 -G-ANALVAGSAVFGA---KDYAEAIKGIKTSKR  184 (190)
Q Consensus       156 -G-ad~~VvGsaI~~~---~dp~~~~~~l~~~~~  184 (190)
                       + .+-+-+|-+|+..   --..++++++++.++
T Consensus       203 ~~~i~EvnIGHsiia~Al~~Gl~~AV~~m~~~~~  236 (237)
T TIGR00559       203 LPYLDELNIGHAIIADAVYLGLEEAIREMRDLIK  236 (237)
T ss_pred             CCCceEEecCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence             3 5888899887753   356788888887765

PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=97.83  E-value=0.001  Score=56.26  Aligned_cols=142  Identities=11%  Similarity=0.132  Sum_probs=94.0

Q ss_pred             CCCcEEEEEeecChHHHHH---HHHHcCCCEEEEcccCC---------------CcchHHHHHHHHHHh---CCcEEEEE
Q 029661           23 TDLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL---GAKAGVVL   81 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~i~---~~~~~Gad~v~vh~e~~---------------~~~~~~~~i~~i~~~---g~~~g~~i   81 (190)
                      .+.|+.+.|.-+||+.+.+   .+.+.|+|.|=+|.-+.               ..+-+.++++++++.   ++.+.+=+
T Consensus        61 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKi  140 (312)
T PRK10550         61 SGTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKV  140 (312)
T ss_pred             CCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEE
Confidence            3479999999999988764   46778999999985431               012345667777764   36666655


Q ss_pred             cCCCC----HHHHHHhhcc--cceEEEEeeecCCCCcccchh--hHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHH
Q 029661           82 NPATS----LSAIECVLDV--VDLVLIMSVNPGFGGQSFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKV  152 (190)
Q Consensus        82 ~p~t~----~~~~~~~~~~--~d~i~~m~v~pG~~gq~~~~~--~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~  152 (190)
                      .....    ...+.+.++.  +|.+.   +|+++..|.+...  -++.++++++..     ++++..-|||+ ++.+.++
T Consensus       141 R~g~~~~~~~~~~a~~l~~~Gvd~i~---Vh~Rt~~~~y~g~~~~~~~i~~ik~~~-----~iPVi~nGdI~t~~da~~~  212 (312)
T PRK10550        141 RLGWDSGERKFEIADAVQQAGATELV---VHGRTKEDGYRAEHINWQAIGEIRQRL-----TIPVIANGEIWDWQSAQQC  212 (312)
T ss_pred             ECCCCCchHHHHHHHHHHhcCCCEEE---ECCCCCccCCCCCcccHHHHHHHHhhc-----CCcEEEeCCcCCHHHHHHH
Confidence            55422    1122233332  67775   4665555544321  356677776543     47899999996 7899887


Q ss_pred             H-HcCCCEEEEcccccCCCCH
Q 029661          153 I-EAGANALVAGSAVFGAKDY  172 (190)
Q Consensus       153 ~-~aGad~~VvGsaI~~~~dp  172 (190)
                      . ..|+|.+-+||+.+..+..
T Consensus       213 l~~~g~DgVmiGRg~l~nP~l  233 (312)
T PRK10550        213 MAITGCDAVMIGRGALNIPNL  233 (312)
T ss_pred             HhccCCCEEEEcHHhHhCcHH
Confidence            6 5899999999998875533

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=97.83  E-value=0.00085  Score=54.76  Aligned_cols=136  Identities=18%  Similarity=0.213  Sum_probs=81.5

Q ss_pred             CHHHHHHhccCCCCcEEEEEeec-Ch-------H------HHHHHHHHcCCCEEEEcccCCC----cchHHHHHHHHHHh
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIV-EP-------E------QRVPDFIKAGADIVSVHCEQSS----TIHLHRTLNQIKDL   73 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~-dp-------~------~~i~~~~~~Gad~v~vh~e~~~----~~~~~~~i~~i~~~   73 (190)
                      +...++.+++..++|+.+  |+. ++       .      +-++.+.++|+|++.|..-...    .+...++++.++  
T Consensus        39 S~g~i~~~~~~~~ipv~v--MIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~--  114 (248)
T PRK11572         39 SLGVLKSVRERVTIPVHP--IIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG--  114 (248)
T ss_pred             CHHHHHHHHHhcCCCeEE--EEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc--
Confidence            355788888766777665  774 21       1      2356689999999999765411    122445555553  


Q ss_pred             CCcEEE--EEcC-CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccH
Q 029661           74 GAKAGV--VLNP-ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA  149 (190)
Q Consensus        74 g~~~g~--~i~p-~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~  149 (190)
                      ++++-+  ++.. ..+.+.++.+++. +|.|+-    -  +|+.-..+.++.|+++.+...    ...|.+.||||++|+
T Consensus       115 ~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILT----S--Gg~~~a~~g~~~L~~lv~~a~----~~~Im~GgGV~~~Nv  184 (248)
T PRK11572        115 PLAVTFHRAFDMCANPLNALKQLADLGVARILT----S--GQQQDAEQGLSLIMELIAASD----GPIIMAGAGVRLSNL  184 (248)
T ss_pred             CCceEEechhhccCCHHHHHHHHHHcCCCEEEC----C--CCCCCHHHHHHHHHHHHHhcC----CCEEEeCCCCCHHHH
Confidence            444433  2222 2344555555554 677751    1  232223344555555544432    234999999999999


Q ss_pred             HHHHHcCCCEEE
Q 029661          150 YKVIEAGANALV  161 (190)
Q Consensus       150 ~~~~~aGad~~V  161 (190)
                      .++.+.|+.-+=
T Consensus       185 ~~l~~tG~~~~H  196 (248)
T PRK11572        185 HKFLDAGVREVH  196 (248)
T ss_pred             HHHHHcCCCEEe
Confidence            999999998764

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.82  E-value=0.00024  Score=59.31  Aligned_cols=93  Identities=16%  Similarity=0.224  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHhCC-cEEEEEcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEE
Q 029661           62 HLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE  139 (190)
Q Consensus        62 ~~~~~i~~i~~~g~-~~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~  139 (190)
                      .+.+.++.+|++.. ..-+.+..+ +++.+++.++. +|.|++       +.  |.|+.+   +++-+++++   +..++
T Consensus       182 ~i~~av~~~r~~~~~~~kIeVEv~-tleea~~a~~agaDiImL-------Dn--mspe~l---~~av~~~~~---~~~le  245 (290)
T PRK06559        182 SVQKAIAQARAYAPFVKMVEVEVE-SLAAAEEAAAAGADIIML-------DN--MSLEQI---EQAITLIAG---RSRIE  245 (290)
T ss_pred             cHHHHHHHHHHhCCCCCeEEEECC-CHHHHHHHHHcCCCEEEE-------CC--CCHHHH---HHHHHHhcC---ceEEE
Confidence            57788888888632 122444443 44666666654 898875       22  444444   444444432   46899


Q ss_pred             EeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661          140 VDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       140 vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      +.||||++|++++.+.|+|++++|+-..+++
T Consensus       246 aSGGI~~~ni~~yA~tGVD~Is~galthsa~  276 (290)
T PRK06559        246 CSGNIDMTTISRFRGLAIDYVSSGSLTHSAK  276 (290)
T ss_pred             EECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence            9999999999999999999999998666554

>PRK15492 triosephosphate isomerase; Provisional

Probab=97.81  E-value=0.00037  Score=57.39  Aligned_cols=131  Identities=15%  Similarity=0.171  Sum_probs=81.2

Q ss_pred             HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCCH-------HH----HHHhhccc--ce-
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSL-------SA----IECVLDVV--DL-   99 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~-------~~----~~~~~~~~--d~-   99 (190)
                      .+.+.++|++++.+ |.|-     ..++.+.+-++.+.++|+.+.+.+.-....       +.    ++..+..+  +. 
T Consensus        87 a~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~~~~~~~  166 (260)
T PRK15492         87 PLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGINPDQL  166 (260)
T ss_pred             HHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhcCCHhhc
Confidence            57899999999999 4331     024456677888999999998888732111       11    11222221  21 


Q ss_pred             -EEEEeeec----CCCCcccch----hhHHHHHHH-HHHHhhcCCCCeEEEeCCCCcccHHHHH-HcCCCEEEEcccccC
Q 029661          100 -VLIMSVNP----GFGGQSFIE----SQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVFG  168 (190)
Q Consensus       100 -i~~m~v~p----G~~gq~~~~----~~~~ki~~~-~~~~~~~~~~~~i~vdGGI~~e~~~~~~-~aGad~~VvGsaI~~  168 (190)
                       =++.+.+|    |++|....+    ++.+.||+. .++..+...+++|..+|+++++|+.++. ....|++-+|++=.+
T Consensus       167 ~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~~~N~~~l~~~~diDG~LvG~aSl~  246 (260)
T PRK15492        167 AKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVNAENANELFGQPHIDGLFIGRSAWD  246 (260)
T ss_pred             CceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccCHHHHHHHhcCCCCCEEEeehhhcC
Confidence             12345566    655665444    344445442 3333322345789999999999999884 445999999987555


Q ss_pred             CC
Q 029661          169 AK  170 (190)
Q Consensus       169 ~~  170 (190)
                      .+
T Consensus       247 ~~  248 (260)
T PRK15492        247 AD  248 (260)
T ss_pred             HH
Confidence            43

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=97.81  E-value=0.0024  Score=50.90  Aligned_cols=167  Identities=22%  Similarity=0.263  Sum_probs=107.3

Q ss_pred             CCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEccc-----CCCcchHHHHHHH---HHHh--CCcEE
Q 029661            9 ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE-----QSSTIHLHRTLNQ---IKDL--GAKAG   78 (190)
Q Consensus         9 ~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e-----~~~~~~~~~~i~~---i~~~--g~~~g   78 (190)
                      +.-.|+.|+..|+.+++|+=+  ---+|+.|.+ +.++|||+|-+.-.     .+-.-+.+++++.   .|+.  ..-..
T Consensus        46 IAadp~LV~~~~~~s~lPICV--SaVep~~f~~-aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~Ls  122 (242)
T PF04481_consen   46 IAADPELVKLAKSLSNLPICV--SAVEPELFVA-AVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLS  122 (242)
T ss_pred             ecCCHHHHHHHHHhCCCCeEe--ecCCHHHHHH-HHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceE
Confidence            667899999999999999877  3458988764 78899999998621     1111123444444   4443  22223


Q ss_pred             EEEcCCCCHHHHHHhh----c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHh-----hcCCCCeEEEeCCCCccc
Q 029661           79 VVLNPATSLSAIECVL----D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCL-----EKGVNPWIEVDGGVGPKN  148 (190)
Q Consensus        79 ~~i~p~t~~~~~~~~~----~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~-----~~~~~~~i~vdGGI~~e~  148 (190)
                      +.+..--|++.-.++.    + .+|+|.   .+-|+..+++.+.++..|++.-.-+.     .+..+.++--.-|++.=|
T Consensus       123 VTVPHiL~ld~Qv~LA~~L~~~GaDiIQ---TEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT  199 (242)
T PF04481_consen  123 VTVPHILPLDQQVQLAEDLVKAGADIIQ---TEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVT  199 (242)
T ss_pred             EecCccccHHHHHHHHHHHHHhCCcEEE---cCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhh
Confidence            3332223343322222    1 378885   35555555555666555544322111     234678899999999999


Q ss_pred             HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661          149 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       149 ~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~  181 (190)
                      ++..+.+||.++=+||+|-+-+|..+.+..+|+
T Consensus       200 ~PmAiaaGAsGVGVGSavn~Ln~~~aMva~vr~  232 (242)
T PF04481_consen  200 APMAIAAGASGVGVGSAVNRLNDEVAMVAAVRS  232 (242)
T ss_pred             HHHHHHcCCcccchhHHhhhcccHHHHHHHHHH
Confidence            999999999999999999998888765554444

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=97.81  E-value=0.00037  Score=56.09  Aligned_cols=161  Identities=17%  Similarity=0.245  Sum_probs=89.5

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHH--HHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA   89 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~--~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~   89 (190)
                      .|+.|++|...-.+|+-+..-+-+   |++  .+-..|+|+|-   |+. .-++......+.+....+=+++.-..--|.
T Consensus        65 Dp~~i~eim~aVsIPVMAKvRIGH---~~EA~iLealgVD~ID---ESE-VLTPAD~~~Hi~K~~FtVPFVcGarnLgEA  137 (296)
T COG0214          65 DPKMIEEIMDAVSIPVMAKVRIGH---FVEAQILEALGVDMID---ESE-VLTPADEEFHINKWKFTVPFVCGARNLGEA  137 (296)
T ss_pred             CHHHHHHHHHhcccceeeeeecch---hHHHHHHHHhCCCccc---ccc-ccCCCchhhhcchhhcccceecCcCcHHHH
Confidence            578889988777788888554444   543  35667888773   321 122333333444544444444333333355


Q ss_pred             HHHhhcccceEEEEeeecCCCCccc----chhhHHHHHHHHHHH---------------------hhcCCCCeEE--EeC
Q 029661           90 IECVLDVVDLVLIMSVNPGFGGQSF----IESQVKKISDLRRMC---------------------LEKGVNPWIE--VDG  142 (190)
Q Consensus        90 ~~~~~~~~d~i~~m~v~pG~~gq~~----~~~~~~ki~~~~~~~---------------------~~~~~~~~i~--vdG  142 (190)
                      ++++-+.+-.|=- --++|++.-.-    .......|++++++.                     .+.+ .+++.  ..|
T Consensus       138 lRRI~EGAaMIRT-KGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~g-rLPVvnFAAG  215 (296)
T COG0214         138 LRRISEGAAMIRT-KGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLG-RLPVVNFAAG  215 (296)
T ss_pred             HHHHhhhHHHHhc-CCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhC-CCCeEeeccc
Confidence            6665554443310 12345442100    001111122221111                     1111 12222  677


Q ss_pred             CCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661          143 GVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       143 GI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~  181 (190)
                      ||- |.....+.+.|||++-|||.||+++||.+.++.+-+
T Consensus       216 GvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~  255 (296)
T COG0214         216 GVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVE  255 (296)
T ss_pred             CcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHH
Confidence            776 889999999999999999999999999998887754

>cd04732 HisA HisA

Probab=97.80  E-value=7.1e-05  Score=60.20  Aligned_cols=79  Identities=11%  Similarity=0.291  Sum_probs=56.5

Q ss_pred             CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661           83 PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        83 p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      ...|.+..+.+.+. +|.+.+......+.++...   ++.++++++..     +.++.++|||+ ++.++++.++|||.+
T Consensus        28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~---~~~i~~i~~~~-----~~pv~~~GgI~~~e~~~~~~~~Gad~v   99 (234)
T cd04732          28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVN---LELIEEIVKAV-----GIPVQVGGGIRSLEDIERLLDLGVSRV   99 (234)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCC---HHHHHHHHHhc-----CCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence            45667666666543 7888777665544444443   44455555543     36899999999 699999999999999


Q ss_pred             EEcccccCC
Q 029661          161 VAGSAVFGA  169 (190)
Q Consensus       161 VvGsaI~~~  169 (190)
                      ++||+.+..
T Consensus       100 vigs~~l~d  108 (234)
T cd04732         100 IIGTAAVKN  108 (234)
T ss_pred             EECchHHhC
Confidence            999998864

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=97.80  E-value=0.0014  Score=53.06  Aligned_cols=138  Identities=16%  Similarity=0.161  Sum_probs=92.8

Q ss_pred             CCCcEEEEEeecChHHHHHH--HHHcCCCEEEEcccC----------C-----CcchHHHHHHHHHHhCCcEEEEEcCCC
Q 029661           23 TDLPLDVHLMIVEPEQRVPD--FIKAGADIVSVHCEQ----------S-----STIHLHRTLNQIKDLGAKAGVVLNPAT   85 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~i~~--~~~~Gad~v~vh~e~----------~-----~~~~~~~~i~~i~~~g~~~g~~i~p~t   85 (190)
                      .+.++.+-+-..+|+.+.+.  ..+.++|++-+-.-+          +     ..+.+.++++.+++.++.+.+=+.+..
T Consensus        66 ~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~  145 (231)
T TIGR00736        66 SRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC  145 (231)
T ss_pred             hcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            45689998888899887654  345589998873221          0     123456778888877777777677754


Q ss_pred             CH-H--HHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCE
Q 029661           86 SL-S--AIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANA  159 (190)
Q Consensus        86 ~~-~--~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~  159 (190)
                      +. +  .+.+.+.  .+|.|.+   +.++.|.  ....++.|+++++-.+    +++|-.-|||+ .+++.++.++|||.
T Consensus       146 ~~~~~~~~a~~l~~aGad~i~V---d~~~~g~--~~a~~~~I~~i~~~~~----~ipIIgNGgI~s~eda~e~l~~GAd~  216 (231)
T TIGR00736       146 IPLDELIDALNLVDDGFDGIHV---DAMYPGK--PYADMDLLKILSEEFN----DKIIIGNNSIDDIESAKEMLKAGADF  216 (231)
T ss_pred             CcchHHHHHHHHHHcCCCEEEE---eeCCCCC--chhhHHHHHHHHHhcC----CCcEEEECCcCCHHHHHHHHHhCCCe
Confidence            31 1  2223232  3788865   4343332  1134777777776432    26788999999 79999999999999


Q ss_pred             EEEcccccCC
Q 029661          160 LVAGSAVFGA  169 (190)
Q Consensus       160 ~VvGsaI~~~  169 (190)
                      +-+||++++.
T Consensus       217 VmvgR~~l~~  226 (231)
T TIGR00736       217 VSVARAILKG  226 (231)
T ss_pred             EEEcHhhccC
Confidence            9999988763

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=97.80  E-value=8.2e-05  Score=60.90  Aligned_cols=86  Identities=16%  Similarity=0.171  Sum_probs=57.3

Q ss_pred             CCC-HHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEE
Q 029661           84 ATS-LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV  161 (190)
Q Consensus        84 ~t~-~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~V  161 (190)
                      ..| ++.++.|.+. ++.+-+.-.     |.. .   .+.|+++.+.     .+.++++.|||+.++++.+.++|||-++
T Consensus        37 ~~pp~~~A~~~~~~Ga~~lHvVDL-----g~~-n---~~~i~~i~~~-----~~~~v~vGGGIr~e~v~~~l~aGa~rVv  102 (253)
T TIGR02129        37 DKPSSYYAKLYKDDGVKGCHVIML-----GPN-N---DDAAKEALHA-----YPGGLQVGGGINDTNAQEWLDEGASHVI  102 (253)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEEC-----CCC-c---HHHHHHHHHh-----CCCCEEEeCCcCHHHHHHHHHcCCCEEE
Confidence            346 8888887654 666644323     322 2   2334444443     2468999999999999999999999999


Q ss_pred             EcccccCCCC--HHHHHHHHHHhhc
Q 029661          162 AGSAVFGAKD--YAEAIKGIKTSKR  184 (190)
Q Consensus       162 vGsaI~~~~d--p~~~~~~l~~~~~  184 (190)
                      +||+.++.+.  | +.++++.+...
T Consensus       103 IGS~av~~~~i~~-~~~~~i~~~fG  126 (253)
T TIGR02129       103 VTSWLFTKGKFDL-KRLKEIVSLVG  126 (253)
T ss_pred             ECcHHHhCCCCCH-HHHHHHHHHhC
Confidence            9999987532  3 34444444443

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PTZ00333 triosephosphate isomerase; Provisional

Probab=97.79  E-value=0.00089  Score=55.03  Aligned_cols=137  Identities=18%  Similarity=0.279  Sum_probs=87.6

Q ss_pred             HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCC-------HH----HHHHhhcccce---
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LS----AIECVLDVVDL---   99 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-------~~----~~~~~~~~~d~---   99 (190)
                      .+.+.++|++++.+ |.|-     .+++.+.+-++.+.++|+.+.+.+.-...       .+    .++..++.++.   
T Consensus        82 ~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~~~  161 (255)
T PTZ00333         82 AEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEAW  161 (255)
T ss_pred             HHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHHHc
Confidence            57899999999999 3321     12466788888999999999988873221       11    22333333321   


Q ss_pred             -EEEEeeec----CCCCcccchhhH-HHHHHHHHHHhhc-----CCCCeEEEeCCCCcccHHHH-HHcCCCEEEEccccc
Q 029661          100 -VLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVF  167 (190)
Q Consensus       100 -i~~m~v~p----G~~gq~~~~~~~-~ki~~~~~~~~~~-----~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~  167 (190)
                       =++.+-+|    | +|+...|+.. +-.+.+|+.+.+.     ..+.+|..+|+|+++|+.++ ...++|++-+||+..
T Consensus       162 ~~iiIAYEPvWAIG-tg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl  240 (255)
T PTZ00333        162 DNIVIAYEPVWAIG-TGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASL  240 (255)
T ss_pred             ceEEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhh
Confidence             12345566    4 3555444443 3344555544321     23578999999999999765 577899999999888


Q ss_pred             CCCCHHHHHHH
Q 029661          168 GAKDYAEAIKG  178 (190)
Q Consensus       168 ~~~dp~~~~~~  178 (190)
                      + +++.+-++.
T Consensus       241 ~-~~f~~Ii~~  250 (255)
T PTZ00333        241 K-PDFVDIIKS  250 (255)
T ss_pred             h-hhHHHHHHH
Confidence            7 356555544

>cd00945 Aldolase_Class_I Class I aldolases

Probab=97.78  E-value=0.00064  Score=52.61  Aligned_cols=142  Identities=20%  Similarity=0.270  Sum_probs=85.7

Q ss_pred             HHHHHHhccC-C--CCcEEEEEeecC----h---HHHHHHHHHcCCCEEEEcccCC---C--cchHHHHHHHHHHh---C
Q 029661           13 PLVVDALRPV-T--DLPLDVHLMIVE----P---EQRVPDFIKAGADIVSVHCEQS---S--TIHLHRTLNQIKDL---G   74 (190)
Q Consensus        13 ~~~v~~i~~~-~--~~~i~~hlmv~d----p---~~~i~~~~~~Gad~v~vh~e~~---~--~~~~~~~i~~i~~~---g   74 (190)
                      ...++.+++. .  +.|+.++.-..+    .   .+.++.+.++|||.+.++.-..   +  .+.+.+.++.+.+.   +
T Consensus        34 g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  113 (201)
T cd00945          34 PGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGG  113 (201)
T ss_pred             HHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCC
Confidence            3777777664 3  378888766554    3   3457788999999999863210   0  12344555555554   7


Q ss_pred             CcEEEEEcCCCC--HHHHHHh---h--cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-c
Q 029661           75 AKAGVVLNPATS--LSAIECV---L--DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P  146 (190)
Q Consensus        75 ~~~g~~i~p~t~--~~~~~~~---~--~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~  146 (190)
                      +.+.+-..|...  .+.+.+.   +  ..+|.|-   ..+|....   ...++.++++++..+   .++++.+.||++ +
T Consensus       114 ~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK---~~~~~~~~---~~~~~~~~~i~~~~~---~~~~v~~~gg~~~~  184 (201)
T cd00945         114 LPLKVILETRGLKTADEIAKAARIAAEAGADFIK---TSTGFGGG---GATVEDVKLMKEAVG---GRVGVKAAGGIKTL  184 (201)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEE---eCCCCCCC---CCCHHHHHHHHHhcc---cCCcEEEECCCCCH
Confidence            777776666533  3333332   1  2355542   22232110   113445555555442   135788999999 7


Q ss_pred             ccHHHHHHcCCCEEEEc
Q 029661          147 KNAYKVIEAGANALVAG  163 (190)
Q Consensus       147 e~~~~~~~aGad~~VvG  163 (190)
                      +++..+...|++.+++|
T Consensus       185 ~~~~~~~~~Ga~g~~~g  201 (201)
T cd00945         185 EDALAAIEAGADGIGTS  201 (201)
T ss_pred             HHHHHHHHhccceeecC
Confidence            88889999999999876

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=97.75  E-value=0.0023  Score=56.17  Aligned_cols=152  Identities=18%  Similarity=0.160  Sum_probs=98.5

Q ss_pred             HHHHhccC-CCCcEEEEEeec-ChHHH---HHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHh-C
Q 029661           15 VVDALRPV-TDLPLDVHLMIV-EPEQR---VPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDL-G   74 (190)
Q Consensus        15 ~v~~i~~~-~~~~i~~hlmv~-dp~~~---i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~-g   74 (190)
                      .++.+++. ++.|+.+.+.-. +++.|   .+.+.++|+|++-+-....              ..+.+.++++.+++. .
T Consensus        89 ~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~  168 (420)
T PRK08318         89 EIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSR  168 (420)
T ss_pred             HHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccC
Confidence            34445443 467888988877 78655   4456778999999842220              112456677777765 4


Q ss_pred             CcEEEEEcCCC-CHHHHHHhhc--ccceEEE-------Eee-----------ec-----CCCCcccchhhHHHHHHHHHH
Q 029661           75 AKAGVVLNPAT-SLSAIECVLD--VVDLVLI-------MSV-----------NP-----GFGGQSFIESQVKKISDLRRM  128 (190)
Q Consensus        75 ~~~g~~i~p~t-~~~~~~~~~~--~~d~i~~-------m~v-----------~p-----G~~gq~~~~~~~~ki~~~~~~  128 (190)
                      +.+.+=+.|+. .+..+.+.+.  .+|-|.+       |.+           ++     |++|....|..++.|+++++.
T Consensus       169 ~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~  248 (420)
T PRK08318        169 LPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD  248 (420)
T ss_pred             CcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhc
Confidence            55555577764 3434434332  3676653       211           11     345666566678888887765


Q ss_pred             HhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661          129 CLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       129 ~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      ...  .+++|..-|||. .+++.+++.+|||.+=+||+++.
T Consensus       249 ~~~--~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~  287 (420)
T PRK08318        249 PET--RGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ  287 (420)
T ss_pred             ccc--CCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence            421  147888999998 78999999999999999999886

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=97.75  E-value=0.00016  Score=60.51  Aligned_cols=92  Identities=15%  Similarity=0.265  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE
Q 029661           62 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV  140 (190)
Q Consensus        62 ~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v  140 (190)
                      .+.+.++.+|+.-...-+.+..+| .+.+.+.++. +|.|++       +.  |.|+.   ++++.++...   ++.|++
T Consensus       194 ~i~~av~~~r~~~~~~kIeVEv~s-leea~ea~~~gaDiI~L-------Dn--~s~e~---~~~av~~~~~---~~~iea  257 (296)
T PRK09016        194 SIRQAVEKAFWLHPDVPVEVEVEN-LDELDQALKAGADIIML-------DN--FTTEQ---MREAVKRTNG---RALLEV  257 (296)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEeCC-HHHHHHHHHcCCCEEEe-------CC--CChHH---HHHHHHhhcC---CeEEEE
Confidence            367778888875322224555555 6666666654 888875       22  33333   3444444332   478999


Q ss_pred             eCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661          141 DGGVGPKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       141 dGGI~~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .||||++|+.++.+.|+|++++|+..-++
T Consensus       258 SGGI~~~ni~~yA~tGVD~Is~galthsa  286 (296)
T PRK09016        258 SGNVTLETLREFAETGVDFISVGALTKHV  286 (296)
T ss_pred             ECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence            99999999999999999999999854443

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.75  E-value=0.00014  Score=65.67  Aligned_cols=98  Identities=16%  Similarity=0.069  Sum_probs=65.9

Q ss_pred             CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc------------ccHHH
Q 029661           85 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP------------KNAYK  151 (190)
Q Consensus        85 t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~------------e~~~~  151 (190)
                      .|++..+.|-+. +|.+.++-......+..-....++-|+++.+.+     .++++|.|||+.            |.++.
T Consensus       268 dPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-----~ip~~vGGGIr~~~d~~~~~~~~~e~~~~  342 (538)
T PLN02617        268 KPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-----FVPLTVGGGIRDFTDANGRYYSSLEVASE  342 (538)
T ss_pred             CHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-----CCCEEEcCCccccccccccccchHHHHHH
Confidence            566777776654 899988777632233333334466666665543     478999999995            66899


Q ss_pred             HHHcCCCEEEEcccccCCC----------CHHHHHHHHHHhhccccc
Q 029661          152 VIEAGANALVAGSAVFGAK----------DYAEAIKGIKTSKRPQAV  188 (190)
Q Consensus       152 ~~~aGad~~VvGsaI~~~~----------dp~~~~~~l~~~~~~~~~  188 (190)
                      +.++|||-+++||+-++.+          +|. .++++-+....|++
T Consensus       343 ~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~-~i~~~~~~fg~q~i  388 (538)
T PLN02617        343 YFRSGADKISIGSDAVYAAEEYIASGVKTGKT-SIEQISRVYGNQAV  388 (538)
T ss_pred             HHHcCCCEEEEChHHHhChhhhhccccccCHH-HHHHHHHHcCCceE
Confidence            9999999999999877643          443 45555444455543

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.74  E-value=0.00012  Score=59.70  Aligned_cols=81  Identities=14%  Similarity=0.254  Sum_probs=59.1

Q ss_pred             CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661           83 PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        83 p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      ...|++..+.|.+. +|.+.+.-.+....|+.-.   .+-|+++.+..      .+++++|||+ .+.++.+.++|||-+
T Consensus        29 ~~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n---~~~i~~i~~~~------~~v~vGGGIrs~e~~~~~l~~Ga~rv   99 (241)
T PRK14114         29 EKDPAELVEKLIEEGFTLIHVVDLSKAIENSVEN---LPVLEKLSEFA------EHIQIGGGIRSLDYAEKLRKLGYRRQ   99 (241)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCCcccCCcch---HHHHHHHHhhc------CcEEEecCCCCHHHHHHHHHCCCCEE
Confidence            35788877777654 7888887777555554433   33444444432      3799999999 699999999999999


Q ss_pred             EEcccccCCCCH
Q 029661          161 VAGSAVFGAKDY  172 (190)
Q Consensus       161 VvGsaI~~~~dp  172 (190)
                      |+||..++.++.
T Consensus       100 vigT~a~~~p~~  111 (241)
T PRK14114        100 IVSSKVLEDPSF  111 (241)
T ss_pred             EECchhhCCHHH
Confidence            999999885543

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=97.73  E-value=6.2e-05  Score=60.84  Aligned_cols=94  Identities=16%  Similarity=0.300  Sum_probs=60.1

Q ss_pred             EcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCC
Q 029661           81 LNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGAN  158 (190)
Q Consensus        81 i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad  158 (190)
                      .....|++.++.|.. .+|.+.+.-.+....|   .+..++.|+++.+..     ..+++++|||+ .+.+..+.++||+
T Consensus        26 ~~~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g---~~~n~~~i~~i~~~~-----~~~i~vgGGIrs~ed~~~ll~~Ga~   97 (229)
T PF00977_consen   26 VYSGDPVEVAKAFNEQGADELHIVDLDAAKEG---RGSNLELIKEIAKET-----GIPIQVGGGIRSIEDAERLLDAGAD   97 (229)
T ss_dssp             CECCCHHHHHHHHHHTT-SEEEEEEHHHHCCT---HHHHHHHHHHHHHHS-----SSEEEEESSE-SHHHHHHHHHTT-S
T ss_pred             EECcCHHHHHHHHHHcCCCEEEEEEccCcccC---chhHHHHHHHHHhcC-----CccEEEeCccCcHHHHHHHHHhCCC
Confidence            344567777777743 3788777655532223   233455566655543     36899999999 6899999999999


Q ss_pred             EEEEcccccCCCCHHHHHHHHHHhhcc
Q 029661          159 ALVAGSAVFGAKDYAEAIKGIKTSKRP  185 (190)
Q Consensus       159 ~~VvGsaI~~~~dp~~~~~~l~~~~~~  185 (190)
                      -+|+||+.++.++   .++++.+....
T Consensus        98 ~Vvigt~~~~~~~---~l~~~~~~~g~  121 (229)
T PF00977_consen   98 RVVIGTEALEDPE---LLEELAERYGS  121 (229)
T ss_dssp             EEEESHHHHHCCH---HHHHHHHHHGG
T ss_pred             EEEeChHHhhchh---HHHHHHHHcCc
Confidence            9999999887543   34444444333

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5

Probab=97.73  E-value=0.00029  Score=57.57  Aligned_cols=133  Identities=19%  Similarity=0.314  Sum_probs=82.8

Q ss_pred             HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCC-------CCHHHHH----Hhhcccce---
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPA-------TSLSAIE----CVLDVVDL---   99 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~-------t~~~~~~----~~~~~~d~---   99 (190)
                      .+++.+.|++++.+ |.|-     .+.+.+.+-++.+.++|+.+.+.+.-+       ...+.+.    ..++.++.   
T Consensus        77 ~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~~  156 (244)
T PF00121_consen   77 AEMLKDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKSILKGIDKEEL  156 (244)
T ss_dssp             HHHHHHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGGGG
T ss_pred             HHHHHHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence            67899999999999 4321     025678888899999999999988742       1122222    22222221   


Q ss_pred             -EEEEeeec----CCCCcccchhhH-HHHHHHHHHHhh-----cCCCCeEEEeCCCCcccHHHH-HHcCCCEEEEccccc
Q 029661          100 -VLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLE-----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVF  167 (190)
Q Consensus       100 -i~~m~v~p----G~~gq~~~~~~~-~ki~~~~~~~~~-----~~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~  167 (190)
                       =++.+-+|    |+ |+...++-. +-.+.+|+.+.+     ...+++|..+|+++++|+.++ ...+.|++-+|++-.
T Consensus       157 ~~~iIAYEPvWAIGt-G~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl  235 (244)
T PF00121_consen  157 KNIIIAYEPVWAIGT-GKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGASL  235 (244)
T ss_dssp             TCEEEEEEEGGGTSS-SS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGGGG
T ss_pred             cceEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchhhh
Confidence             12234565    43 554443333 334455554322     123578999999999999976 467899999999988


Q ss_pred             CCCCHH
Q 029661          168 GAKDYA  173 (190)
Q Consensus       168 ~~~dp~  173 (190)
                      +.+++.
T Consensus       236 ~~~~F~  241 (244)
T PF00121_consen  236 KAESFL  241 (244)
T ss_dssp             STHHHH
T ss_pred             cccchh
Confidence            765443

3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....

>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=97.72  E-value=0.0022  Score=51.10  Aligned_cols=148  Identities=14%  Similarity=0.113  Sum_probs=88.3

Q ss_pred             CCHHHHHHhccC-C-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh--CCcEEEEEcCCCC
Q 029661           11 IGPLVVDALRPV-T-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATS   86 (190)
Q Consensus        11 ~G~~~v~~i~~~-~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~--g~~~g~~i~p~t~   86 (190)
                      ..++..++|.+. + .+..+.=+.-.+++...+.+...|.|.+-+|.+.    + .+.++.+++.  +.++.-++....+
T Consensus        37 V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~e----~-~~~~~~l~~~~~~~~iika~~~~~~  111 (207)
T PRK13958         37 QTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGTE----S-IDFIQEIKKKYSSIKIIKALPADEN  111 (207)
T ss_pred             CCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCCC----C-HHHHHHHhhcCCCceEEEEecccHH
Confidence            456677777763 2 2333332223456777777888999999999863    2 2456667754  3566556655322


Q ss_pred             -HHHHHHhhcccceEEEEeee--cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHH--cCCCEEE
Q 029661           87 -LSAIECVLDVVDLVLIMSVN--PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE--AGANALV  161 (190)
Q Consensus        87 -~~~~~~~~~~~d~i~~m~v~--pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~--aGad~~V  161 (190)
                       .+.+.++...+|++++=+..  +|.+|+.|.-..+   +++   .     ..++...||+|++|+.++..  .+..++=
T Consensus       112 ~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~~dw~~~---~~~---~-----~~p~iLAGGL~peNV~~a~~~~~~p~gVD  180 (207)
T PRK13958        112 IIQNINKYKGFVDLFIIDTPSVSYGGTGQTYDWTIL---KHI---K-----DIPYLIAGGINSENIQTVEQLKLSHQGYD  180 (207)
T ss_pred             HHHHHHHHHhhCCEEEEcCCCCCCCcCCcEeChHHh---hhc---c-----CCCEEEECCCCHHHHHHHHhcCCCCCEEE
Confidence             23344554557888875522  2445777754333   222   1     13577999999999999764  3666666


Q ss_pred             EcccccC--CCCHHH
Q 029661          162 AGSAVFG--AKDYAE  174 (190)
Q Consensus       162 vGsaI~~--~~dp~~  174 (190)
                      +-|.+=.  ..|+..
T Consensus       181 vsSGVE~~G~KD~~k  195 (207)
T PRK13958        181 IASGIETNGRKDINK  195 (207)
T ss_pred             cccccCCCCCCCHHH
Confidence            6555432  246653

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.71  E-value=0.00013  Score=59.17  Aligned_cols=78  Identities=18%  Similarity=0.324  Sum_probs=55.1

Q ss_pred             CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661           84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV  161 (190)
Q Consensus        84 ~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V  161 (190)
                      ..|++..+.|.+. +|.+.+.-.+.-. ++.-.   .+-|+++.+..    . .+++++|||+ .++++.+.+.|||-+|
T Consensus        30 ~dP~~~a~~~~~~ga~~lhivDLd~a~-~~~~n---~~~i~~i~~~~----~-~~v~vGGGIrs~e~~~~~l~~Ga~kvv  100 (232)
T PRK13586         30 GNPIEIASKLYNEGYTRIHVVDLDAAE-GVGNN---EMYIKEISKIG----F-DWIQVGGGIRDIEKAKRLLSLDVNALV  100 (232)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEECCCcC-CCcch---HHHHHHHHhhC----C-CCEEEeCCcCCHHHHHHHHHCCCCEEE
Confidence            4788887777654 7888877666322 33222   34444444421    1 2799999999 5999999999999999


Q ss_pred             EcccccCCC
Q 029661          162 AGSAVFGAK  170 (190)
Q Consensus       162 vGsaI~~~~  170 (190)
                      +||.-++.+
T Consensus       101 igt~a~~~p  109 (232)
T PRK13586        101 FSTIVFTNF  109 (232)
T ss_pred             ECchhhCCH
Confidence            999988754

>PRK05265 pyridoxine 5'-phosphate synthase; Provisional

Probab=97.70  E-value=0.0017  Score=52.45  Aligned_cols=163  Identities=16%  Similarity=0.227  Sum_probs=109.4

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------------CcchHHHHHHHHHHhCCcEEEE
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------------~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      +-+..|++....++..  -.+--.++++.+.+...+.+|+-+|.-             ..+.+..+++.+++.|+++.++
T Consensus        55 ~Dv~~L~~~~~~~lNl--E~a~~~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLF  132 (239)
T PRK05265         55 RDVRLLRETLKTELNL--EMAATEEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLF  132 (239)
T ss_pred             HHHHHHHHhcCCCEEe--ccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEE
Confidence            3466677654445544  233225689999999999999976641             1134788999999999999999


Q ss_pred             EcCCCC-HHHHHHhhcccceEEEEeeecCCCCccc---chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHH-c
Q 029661           81 LNPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSF---IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-A  155 (190)
Q Consensus        81 i~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~---~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~-a  155 (190)
                      +.|+.. ++..+++  .+|.|-+.|   |.....+   ...-++++...-++..+.  .+.+.++.|+|.+|++.+.+ -
T Consensus       133 idP~~~qi~~A~~~--GAd~VELhT---G~yA~a~~~~~~~el~~~~~aa~~a~~l--GL~VnAGHgLny~Nv~~i~~ip  205 (239)
T PRK05265        133 IDPDPEQIEAAAEV--GADRIELHT---GPYADAKTEAEAAELERIAKAAKLAASL--GLGVNAGHGLNYHNVKPIAAIP  205 (239)
T ss_pred             eCCCHHHHHHHHHh--CcCEEEEec---hhhhcCCCcchHHHHHHHHHHHHHHHHc--CCEEecCCCCCHHhHHHHhhCC
Confidence            987533 3333333  589997643   3221111   133367777666666554  46788999999999998765 4


Q ss_pred             CCCEEEEcccccCC---CCHHHHHHHHHHhhcc
Q 029661          156 GANALVAGSAVFGA---KDYAEAIKGIKTSKRP  185 (190)
Q Consensus       156 Gad~~VvGsaI~~~---~dp~~~~~~l~~~~~~  185 (190)
                      +..=+-+|-+|+..   --..++++++++.++.
T Consensus       206 ~i~EvnIGHsiia~Al~~Gl~~aV~~m~~~i~~  238 (239)
T PRK05265        206 GIEELNIGHAIIARALFVGLEEAVREMKRLMDE  238 (239)
T ss_pred             CCeEEccCHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            56778889877753   2566788888776653

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=97.70  E-value=0.0026  Score=54.05  Aligned_cols=149  Identities=14%  Similarity=0.133  Sum_probs=90.6

Q ss_pred             HHHHhccC-CCCcEEEEEeec-----ChHHHHHHHHHcCCCEEEEcccC----C---CcchHH---HHHHHHHHh-CCcE
Q 029661           15 VVDALRPV-TDLPLDVHLMIV-----EPEQRVPDFIKAGADIVSVHCEQ----S---STIHLH---RTLNQIKDL-GAKA   77 (190)
Q Consensus        15 ~v~~i~~~-~~~~i~~hlmv~-----dp~~~i~~~~~~Gad~v~vh~e~----~---~~~~~~---~~i~~i~~~-g~~~   77 (190)
                      ..+.+|+. ++.|+.+-+-+.     +++.+.+....++||.+-+|...    .   ...+..   +.++.+++. .+.+
T Consensus       102 ~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPV  181 (326)
T cd02811         102 SFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPV  181 (326)
T ss_pred             HHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCE
Confidence            33445555 347766666553     35555555666789999998632    0   012333   556666665 6666


Q ss_pred             EEEEcC-CCCHHHHHHhhc-ccceEEEEeeecCCC--------C--------ccc---chhhHHHHHHHHHHHhhcCCCC
Q 029661           78 GVVLNP-ATSLSAIECVLD-VVDLVLIMSVNPGFG--------G--------QSF---IESQVKKISDLRRMCLEKGVNP  136 (190)
Q Consensus        78 g~~i~p-~t~~~~~~~~~~-~~d~i~~m~v~pG~~--------g--------q~~---~~~~~~ki~~~~~~~~~~~~~~  136 (190)
                      .+=... .++.+..+.+.+ .+|.|.+-+. -|+.        +        ..+   ...+.+.|.++++...    ++
T Consensus       182 ivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~-GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~----~i  256 (326)
T cd02811         182 IVKEVGFGISRETAKRLADAGVKAIDVAGA-GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP----DL  256 (326)
T ss_pred             EEEecCCCCCHHHHHHHHHcCCCEEEECCC-CCCcccccccccccccccccccccccccccHHHHHHHHHHHcC----CC
Confidence            653332 255666666554 3899877432 2210        0        111   1223455666655432    47


Q ss_pred             eEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661          137 WIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       137 ~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      +|.++|||+ ...+.+++..|||.+-+||++..
T Consensus       257 pIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~  289 (326)
T cd02811         257 PLIASGGIRNGLDIAKALALGADLVGMAGPFLK  289 (326)
T ss_pred             cEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence            899999999 68888999999999999998654

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.70  E-value=0.0011  Score=59.10  Aligned_cols=131  Identities=21%  Similarity=0.339  Sum_probs=84.9

Q ss_pred             HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE-cCCCCHHHHHHhhc-ccceEEEEeeec-------
Q 029661           37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNP-------  107 (190)
Q Consensus        37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i-~p~t~~~~~~~~~~-~~d~i~~m~v~p-------  107 (190)
                      .+.++.+.+.|+|.|.+-.-.+......++++.+|+.--.+-+.. |..|.-. .+.+++ .+|.|-+ ++=|       
T Consensus       229 ~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~-a~~l~~aGad~v~v-gig~gsictt~  306 (479)
T PRK07807        229 AAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEG-TRDLVEAGADIVKV-GVGPGAMCTTR  306 (479)
T ss_pred             HHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHH-HHHHHHcCCCEEEE-CccCCcccccc
Confidence            356778899999998884333223567788999998644455555 5555543 444444 5898753 2222       


Q ss_pred             CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC-CCHH
Q 029661          108 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA  173 (190)
Q Consensus       108 G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~-~dp~  173 (190)
                      +..|... | .+.-+.++.+...+  .+.++..||||+ ++.+.++..+|||.+++||.+-.. +.|.
T Consensus       307 ~~~~~~~-p-~~~av~~~~~~~~~--~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg  370 (479)
T PRK07807        307 MMTGVGR-P-QFSAVLECAAAARE--LGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPG  370 (479)
T ss_pred             cccCCch-h-HHHHHHHHHHHHHh--cCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCC
Confidence            2222211 2 34445555554333  357899999999 799999999999999999988654 3443

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=97.69  E-value=0.0016  Score=54.04  Aligned_cols=139  Identities=18%  Similarity=0.182  Sum_probs=92.7

Q ss_pred             HHHHHhccC-CCCcEEEEEeecC-----------hHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVE-----------PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL   81 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~d-----------p~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i   81 (190)
                      +.++.+++. ++.++-++....+           -..+++.+.++|+++|.+-.-....+.+.+.++.+|++|.++.+.+
T Consensus        59 e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i  138 (275)
T cd07937          59 ERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAI  138 (275)
T ss_pred             HHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEE
Confidence            556777764 6667776554322           1346788899999997775332124567889999999999887655


Q ss_pred             c----CCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCccc
Q 029661           82 N----PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKN  148 (190)
Q Consensus        82 ~----p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~  148 (190)
                      +    +.++.+.+.++...     +|.|.+    +-+.|...+..+.+.++.+|+..+     .+|++    |.|....|
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~-----~~l~~H~Hnd~GlA~aN  209 (275)
T cd07937         139 CYTGSPVHTLEYYVKLAKELEDMGADSICI----KDMAGLLTPYAAYELVKALKKEVG-----LPIHLHTHDTSGLAVAT  209 (275)
T ss_pred             EecCCCCCCHHHHHHHHHHHHHcCCCEEEE----cCCCCCCCHHHHHHHHHHHHHhCC-----CeEEEEecCCCChHHHH
Confidence            3    44555555554332     677754    344565556666777777776543     45666    77888778


Q ss_pred             HHHHHHcCCCEEE
Q 029661          149 AYKVIEAGANALV  161 (190)
Q Consensus       149 ~~~~~~aGad~~V  161 (190)
                      .-..+++||+.+=
T Consensus       210 ~laA~~aGa~~vd  222 (275)
T cd07937         210 YLAAAEAGVDIVD  222 (275)
T ss_pred             HHHHHHhCCCEEE
Confidence            8888999999764

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PLN02561 triosephosphate isomerase

Probab=97.69  E-value=0.0012  Score=54.17  Aligned_cols=128  Identities=16%  Similarity=0.258  Sum_probs=79.7

Q ss_pred             HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCC-------CH----HHHHHhhcccceE--
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPAT-------SL----SAIECVLDVVDLV--  100 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t-------~~----~~~~~~~~~~d~i--  100 (190)
                      .+.+.++|++++.+ |.|-     .+++.+..-++.+.++|+.+.+.+.-..       ..    +.++..+..++..  
T Consensus        81 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~~~  160 (253)
T PLN02561         81 AEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWAN  160 (253)
T ss_pred             HHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhccccccc
Confidence            67899999999999 4331     1245567778889999999988887321       11    1233333333211  


Q ss_pred             EEEeeec----CCCCcccchhhHHH-HHHHHHHHhh-----cCCCCeEEEeCCCCcccHHHH-HHcCCCEEEEcccccC
Q 029661          101 LIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLE-----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFG  168 (190)
Q Consensus       101 ~~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~-----~~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~~  168 (190)
                      ++.+-+|    | +|+.-.++-.+. .+.+|+.+.+     ...+++|..+|+|+++|+.++ ...++|++-+|++=.+
T Consensus       161 iiIAYEPvWAIG-tG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~  238 (253)
T PLN02561        161 VVLAYEPVWAIG-TGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLK  238 (253)
T ss_pred             eEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhH
Confidence            3445566    5 354433333333 2234443321     123578999999999998865 5778999999997555

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=97.68  E-value=0.0025  Score=54.65  Aligned_cols=151  Identities=17%  Similarity=0.206  Sum_probs=92.6

Q ss_pred             HHHHhccC--CCCcEEEEEeec-Ch---HHHHHHHHHcCCCEEEEcccCCCc----------------------------
Q 029661           15 VVDALRPV--TDLPLDVHLMIV-EP---EQRVPDFIKAGADIVSVHCEQSST----------------------------   60 (190)
Q Consensus        15 ~v~~i~~~--~~~~i~~hlmv~-dp---~~~i~~~~~~Gad~v~vh~e~~~~----------------------------   60 (190)
                      .++++.+.  ++.++-..|.+. |.   ...++.+.++|++.+.+|......                            
T Consensus       106 s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~  185 (344)
T cd02922         106 SLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKG  185 (344)
T ss_pred             CHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCcccccccccccccc
Confidence            44554433  345666777663 33   456788899999999998665100                            


Q ss_pred             -------------chHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHH
Q 029661           61 -------------IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLR  126 (190)
Q Consensus        61 -------------~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~  126 (190)
                                   ....+.++.+++.-..+.+ +.--+..+..+...+ .+|.|.+-. +-|.. ....+.+++-+.+++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~Pvi-vKgv~~~~dA~~a~~~G~d~I~vsn-hgG~~-~d~~~~~~~~L~~i~  262 (344)
T cd02922         186 GGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIV-LKGVQTVEDAVLAAEYGVDGIVLSN-HGGRQ-LDTAPAPIEVLLEIR  262 (344)
T ss_pred             chHHHHHhhccCCCCCHHHHHHHHHhcCCcEE-EEcCCCHHHHHHHHHcCCCEEEEEC-CCccc-CCCCCCHHHHHHHHH
Confidence                         0012456666664422222 222244555655554 488887632 32221 111234555667777


Q ss_pred             HHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661          127 RMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       127 ~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      +...+.+.+++|.+||||+ ..++.+++..|||.+-+|++++.
T Consensus       263 ~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~  305 (344)
T cd02922         263 KHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLY  305 (344)
T ss_pred             HHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            7654433457899999999 57888999999999999998764

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.68  E-value=0.0014  Score=58.53  Aligned_cols=134  Identities=16%  Similarity=0.311  Sum_probs=81.8

Q ss_pred             HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCC--Cc-
Q 029661           37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQ-  112 (190)
Q Consensus        37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~--gq-  112 (190)
                      .+.++.+.++|+|.+.+-.-.+..+...+.++.+|+.-..+-+....--..+..+.+++ .+|.|-+ +.-||..  -+ 
T Consensus       227 ~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~v-g~g~Gs~~ttr~  305 (475)
T TIGR01303       227 GGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKV-GVGPGAMCTTRM  305 (475)
T ss_pred             HHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEE-CCcCCccccCcc
Confidence            45678899999999998433222345677888898863233332232233444555554 4888754 3333321  00 


Q ss_pred             --ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC-CCHH
Q 029661          113 --SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA  173 (190)
Q Consensus       113 --~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~-~dp~  173 (190)
                        .+....+.-+.++.+...+.  ++++..||||+ +.++.+...+|||.+.+||.+-.. +.|.
T Consensus       306 ~~~~g~~~~~a~~~~~~~~~~~--~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg  368 (475)
T TIGR01303       306 MTGVGRPQFSAVLECAAEARKL--GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPG  368 (475)
T ss_pred             ccCCCCchHHHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCC
Confidence              11222333344443333332  47899999999 789999999999999999988654 3443

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.68  E-value=0.00013  Score=59.19  Aligned_cols=79  Identities=20%  Similarity=0.257  Sum_probs=57.0

Q ss_pred             CCCHHHHHHhhc-c-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661           84 ATSLSAIECVLD-V-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        84 ~t~~~~~~~~~~-~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      .+|.+..+.|.+ . +|.+.+.-..-...++.-   -++.|+++.+..     ..+++++|||+ .|.++.+.++||+-+
T Consensus        31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~---n~~~I~~i~~~~-----~~pi~vGGGIrs~e~v~~~l~~Ga~kv  102 (234)
T PRK13587         31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAR---EFDYIKSLRRLT-----TKDIEVGGGIRTKSQIMDYFAAGINYC  102 (234)
T ss_pred             CCHHHHHHHHHhccCCCEEEEEECcccccCCcc---hHHHHHHHHhhc-----CCeEEEcCCcCCHHHHHHHHHCCCCEE
Confidence            467777777776 3 788888666533334332   244455554432     36899999999 799999999999999


Q ss_pred             EEcccccCCC
Q 029661          161 VAGSAVFGAK  170 (190)
Q Consensus       161 VvGsaI~~~~  170 (190)
                      |+||+-++.+
T Consensus       103 vigt~a~~~~  112 (234)
T PRK13587        103 IVGTKGIQDT  112 (234)
T ss_pred             EECchHhcCH
Confidence            9999988753

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=97.67  E-value=0.00093  Score=56.40  Aligned_cols=143  Identities=17%  Similarity=0.261  Sum_probs=94.7

Q ss_pred             CCCcEEEEEeecChHHHHHH---HHHcC-CCEEEEcccCC----------CcchHHHHHHHHHHh-CCcEEEEEcCCCCH
Q 029661           23 TDLPLDVHLMIVEPEQRVPD---FIKAG-ADIVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPATSL   87 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~i~~---~~~~G-ad~v~vh~e~~----------~~~~~~~~i~~i~~~-g~~~g~~i~p~t~~   87 (190)
                      ++.|+.+.++-.++++|.+.   +.++| ||.+-+-..+.          +.+.+.++++.+++. .+.+.+=+.|..+.
T Consensus        91 ~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~  170 (310)
T PRK02506         91 PNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFDI  170 (310)
T ss_pred             CCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCCCCH
Confidence            36899999888888877543   45667 99998843320          023456677777774 45566678888776


Q ss_pred             HHHHHhhc-----ccceEE-E------Eeeec--------------CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEe
Q 029661           88 SAIECVLD-----VVDLVL-I------MSVNP--------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD  141 (190)
Q Consensus        88 ~~~~~~~~-----~~d~i~-~------m~v~p--------------G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vd  141 (190)
                      ..+.+.++     .++.|. +      |.+++              |.+|....|..++.+.++++..+   .+++|..-
T Consensus       171 ~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~---~~ipIig~  247 (310)
T PRK02506        171 VHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLN---PSIQIIGT  247 (310)
T ss_pred             HHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcC---CCCCEEEE
Confidence            55544332     123321 1      11211              12455556777777777766542   34789999


Q ss_pred             CCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661          142 GGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       142 GGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      |||. .+++.+++.+|||.+=+||+++.
T Consensus       248 GGI~s~~da~e~i~aGA~~Vqv~ta~~~  275 (310)
T PRK02506        248 GGVKTGRDAFEHILCGASMVQVGTALHK  275 (310)
T ss_pred             CCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence            9998 78999999999999999999876

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.66  E-value=0.0004  Score=57.76  Aligned_cols=137  Identities=18%  Similarity=0.263  Sum_probs=82.0

Q ss_pred             HHHHHhccCCCCcEEEEEeecChH-HHH-HHHHHcCC---------CEEEE---cccC--CCcchHHHHHHHHHHhC---
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPE-QRV-PDFIKAGA---------DIVSV---HCEQ--SSTIHLHRTLNQIKDLG---   74 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~-~~i-~~~~~~Ga---------d~v~v---h~e~--~~~~~~~~~i~~i~~~g---   74 (190)
                      ++|+.++. ++..+..-=|+. |+ +++ +.+..+|-         |.|.+   |...  ...+.+.+.++.+|++.   
T Consensus       116 ~~V~~~~~-~~~~i~~TRKT~-PG~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~  193 (281)
T PRK06543        116 AFVDAVNG-TRARIVDTRKTT-PGLRIFERYAVRCGGGHNHRYSLSDAVMAKDNHLAALAAQGLDLTEALRHVRAQLGHT  193 (281)
T ss_pred             HHHHHhcC-CCCEEEeCCCCC-CcchHHHHHHHHhcCCcCcCCCCCceEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCC
Confidence            45566654 444444422222 53 343 44555542         45555   5331  01124778888888863   


Q ss_pred             CcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHH
Q 029661           75 AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI  153 (190)
Q Consensus        75 ~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~  153 (190)
                      .++-+-+  + +++.+.+.++ .+|.|++       +.  |.|+.   ++++.+++++   ...+++.||||++|+.++.
T Consensus       194 ~kIeVEv--~-slee~~ea~~~gaDiImL-------Dn--~s~e~---l~~av~~~~~---~~~leaSGgI~~~ni~~yA  255 (281)
T PRK06543        194 THVEVEV--D-RLDQIEPVLAAGVDTIML-------DN--FSLDD---LREGVELVDG---RAIVEASGNVNLNTVGAIA  255 (281)
T ss_pred             CcEEEEe--C-CHHHHHHHHhcCCCEEEE-------CC--CCHHH---HHHHHHHhCC---CeEEEEECCCCHHHHHHHH
Confidence            3444433  3 4555566554 4898875       22  44444   3444444433   2479999999999999999


Q ss_pred             HcCCCEEEEcccccCCC
Q 029661          154 EAGANALVAGSAVFGAK  170 (190)
Q Consensus       154 ~aGad~~VvGsaI~~~~  170 (190)
                      +.|+|++++|+-..+++
T Consensus       256 ~tGVD~Is~galths~~  272 (281)
T PRK06543        256 STGVDVISVGALTHSVR  272 (281)
T ss_pred             hcCCCEEEeCccccCCc
Confidence            99999999998666654

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=97.65  E-value=0.0012  Score=54.16  Aligned_cols=147  Identities=18%  Similarity=0.079  Sum_probs=85.5

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC--cchHHHHHHHHHHhC---CcEEEEEc----
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS--TIHLHRTLNQIKDLG---AKAGVVLN----   82 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~--~~~~~~~i~~i~~~g---~~~g~~i~----   82 (190)
                      ..+.+++|.+.++.|+.+===+ +. +-++.++++||+.|.+.-.+..  .-+++-+-+.++++|   +-+++...    
T Consensus        64 n~~~i~~i~~~~~~~v~vGGGI-r~-e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~  141 (253)
T TIGR02129        64 NDDAAKEALHAYPGGLQVGGGI-ND-TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQD  141 (253)
T ss_pred             cHHHHHHHHHhCCCCEEEeCCc-CH-HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCC
Confidence            3467777777666555441111 34 6688899999999999753310  112445555566665   22233322    


Q ss_pred             --------C------CCCH-HHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-c
Q 029661           83 --------P------ATSL-SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P  146 (190)
Q Consensus        83 --------p------~t~~-~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~  146 (190)
                              .      -++. +.++++.+.+..+++=.+.  .+|....+ -++.++++++..     +.++.+.||++ .
T Consensus       142 g~~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~--rDGtl~G~-dlel~~~l~~~~-----~ipVIASGGv~s~  213 (253)
T TIGR02129       142 GRWIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAAD--VEGLCKGI-DEELVSKLGEWS-----PIPITYAGGAKSI  213 (253)
T ss_pred             CcEEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeec--ccCccccC-CHHHHHHHHhhC-----CCCEEEECCCCCH
Confidence                    1      0223 3344443346667665554  33332222 244455555542     47899999999 7


Q ss_pred             ccHHHHHHc--CCCEEEEcccccC
Q 029661          147 KNAYKVIEA--GANALVAGSAVFG  168 (190)
Q Consensus       147 e~~~~~~~a--Gad~~VvGsaI~~  168 (190)
                      +++.++.+.  |...+|+|+++|.
T Consensus       214 eDi~~l~~~~~g~~~aIvG~Alf~  237 (253)
T TIGR02129       214 DDLDLVDELSKGKVDLTIGSALDI  237 (253)
T ss_pred             HHHHHHHHhcCCCCcEEeeehHHH
Confidence            999988554  5566999999885

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=97.64  E-value=0.00031  Score=57.17  Aligned_cols=77  Identities=13%  Similarity=0.228  Sum_probs=55.5

Q ss_pred             CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661           85 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA  162 (190)
Q Consensus        85 t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv  162 (190)
                      .|++..+.|.+. +|.+.+.-.+ +..|..   .-++-|+++.+..     ..+++++|||+ .|.++.+..+||+-+++
T Consensus        33 dp~~~a~~~~~~g~~~l~ivDLd-~~~g~~---~n~~~i~~i~~~~-----~~pv~vgGGirs~edv~~~l~~Ga~kvvi  103 (241)
T PRK14024         33 SPLDAALAWQRDGAEWIHLVDLD-AAFGRG---SNRELLAEVVGKL-----DVKVELSGGIRDDESLEAALATGCARVNI  103 (241)
T ss_pred             CHHHHHHHHHHCCCCEEEEEecc-ccCCCC---ccHHHHHHHHHHc-----CCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence            677777776553 6777776655 322322   2245556655543     36899999999 79999999999999999


Q ss_pred             cccccCCC
Q 029661          163 GSAVFGAK  170 (190)
Q Consensus       163 GsaI~~~~  170 (190)
                      ||+.++.+
T Consensus       104 Gs~~l~~p  111 (241)
T PRK14024        104 GTAALENP  111 (241)
T ss_pred             CchHhCCH
Confidence            99998754

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]

Probab=97.64  E-value=0.00058  Score=56.35  Aligned_cols=140  Identities=15%  Similarity=0.240  Sum_probs=85.1

Q ss_pred             HHHHHhccCCCCcEEEEEeecChH-HHHH-HHHHcCC---------CEEEE---cccCCCcchHHHHHHHHHHh-CCcEE
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPE-QRVP-DFIKAGA---------DIVSV---HCEQSSTIHLHRTLNQIKDL-GAKAG   78 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~-~~i~-~~~~~Ga---------d~v~v---h~e~~~~~~~~~~i~~i~~~-g~~~g   78 (190)
                      +.|+.+|.. +..+-+-=|+ -|+ +.++ .+..+|-         |.+.+   |.-.  ...+.+.++.+|++ +...-
T Consensus       115 ~~V~~~~~~-~~~i~~TRKT-~PglR~leKyAV~~GGG~nHR~gLsDavliKDNHia~--~g~i~~Av~~aR~~~~~~~k  190 (280)
T COG0157         115 RMVEALRGT-NVRIADTRKT-TPGLRLLEKYAVRAGGGDNHRFGLSDAVLIKDNHIAA--AGSITEAVRRARAAAPFTKK  190 (280)
T ss_pred             HHHHHhhcc-CcEEEeccCC-CccHHHHHHHHHHhcCCccccCCCcceEEehhhHHHH--hccHHHHHHHHHHhCCCCce
Confidence            456677663 3333332233 364 4444 4555543         44544   4332  23588899999986 33333


Q ss_pred             EEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCC
Q 029661           79 VVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN  158 (190)
Q Consensus        79 ~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad  158 (190)
                      +-+..++.-+..+.+-..+|.|++       +.  |.|+.   ++++-+++. .+.+..+++.||||++|++.+.+.|+|
T Consensus       191 IEVEvesle~~~eAl~agaDiImL-------DN--m~~e~---~~~av~~l~-~~~~~~lEaSGgIt~~ni~~yA~tGVD  257 (280)
T COG0157         191 IEVEVESLEEAEEALEAGADIIML-------DN--MSPEE---LKEAVKLLG-LAGRALLEASGGITLENIREYAETGVD  257 (280)
T ss_pred             EEEEcCCHHHHHHHHHcCCCEEEe-------cC--CCHHH---HHHHHHHhc-cCCceEEEEeCCCCHHHHHHHhhcCCC
Confidence            556555554443334445999986       22  44444   344444432 223578999999999999999999999


Q ss_pred             EEEEcccccCCC
Q 029661          159 ALVAGSAVFGAK  170 (190)
Q Consensus       159 ~~VvGsaI~~~~  170 (190)
                      ++.+|.-..+++
T Consensus       258 ~IS~galths~~  269 (280)
T COG0157         258 VISVGALTHSAP  269 (280)
T ss_pred             EEEeCccccCCc
Confidence            999987665554

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.62  E-value=0.00021  Score=57.88  Aligned_cols=79  Identities=13%  Similarity=0.347  Sum_probs=53.5

Q ss_pred             CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661           84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV  161 (190)
Q Consensus        84 ~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V  161 (190)
                      ..|.+.++.+.+. +|.+.+-..+....+..   ...+.|+++.+..     +.++.++|||+ .+++..+.++|||.++
T Consensus        32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~---~~~~~i~~i~~~~-----~~~l~v~GGi~~~~~~~~~~~~Ga~~v~  103 (241)
T PRK13585         32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGER---KNAEAIEKIIEAV-----GVPVQLGGGIRSAEDAASLLDLGVDRVI  103 (241)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEechhhhcCCc---ccHHHHHHHHHHc-----CCcEEEcCCcCCHHHHHHHHHcCCCEEE
Confidence            4566766666553 67776654442222221   2244455544432     46899999999 7999999999999999


Q ss_pred             EcccccCCC
Q 029661          162 AGSAVFGAK  170 (190)
Q Consensus       162 vGsaI~~~~  170 (190)
                      +||..++.+
T Consensus       104 iGs~~~~~~  112 (241)
T PRK13585        104 LGTAAVENP  112 (241)
T ss_pred             EChHHhhCh
Confidence            999998744

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=97.61  E-value=0.00024  Score=57.07  Aligned_cols=79  Identities=13%  Similarity=0.281  Sum_probs=56.4

Q ss_pred             CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661           84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV  161 (190)
Q Consensus        84 ~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V  161 (190)
                      .+|.+..+.|.+. +|.+.+...+.-..|+.   ..++.++++++..     +.++.++|||+ .++++.+.++|||.++
T Consensus        30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~---~~~~~i~~i~~~~-----~~pv~~~GGI~~~ed~~~~~~~Ga~~vi  101 (233)
T PRK00748         30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKP---VNLELIEAIVKAV-----DIPVQVGGGIRSLETVEALLDAGVSRVI  101 (233)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCccccCCc---ccHHHHHHHHHHC-----CCCEEEcCCcCCHHHHHHHHHcCCCEEE
Confidence            4566666666543 78888877642223432   3355566665543     36899999999 6999999999999999


Q ss_pred             EcccccCCC
Q 029661          162 AGSAVFGAK  170 (190)
Q Consensus       162 vGsaI~~~~  170 (190)
                      +|++++..+
T Consensus       102 lg~~~l~~~  110 (233)
T PRK00748        102 IGTAAVKNP  110 (233)
T ss_pred             ECchHHhCH
Confidence            999999754

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=97.60  E-value=0.0024  Score=54.41  Aligned_cols=152  Identities=16%  Similarity=0.160  Sum_probs=90.8

Q ss_pred             HHhcc-CCCCcEEEEEeecC-----hHHHHHHHHHcCCCEEEEcccCC-------CcchHH---HHHHHHHHh-CCcEEE
Q 029661           17 DALRP-VTDLPLDVHLMIVE-----PEQRVPDFIKAGADIVSVHCEQS-------STIHLH---RTLNQIKDL-GAKAGV   79 (190)
Q Consensus        17 ~~i~~-~~~~~i~~hlmv~d-----p~~~i~~~~~~Gad~v~vh~e~~-------~~~~~~---~~i~~i~~~-g~~~g~   79 (190)
                      +.+|+ .++.|+.+-+-+..     +..+.+.....+||.+-+|....       ...+..   +.++.+++. ++.+++
T Consensus       105 ~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPViv  184 (333)
T TIGR02151       105 EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIV  184 (333)
T ss_pred             HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEE
Confidence            45566 48889888665422     33344444556788888885310       011233   667777775 666665


Q ss_pred             EEcC-CCCHHHHHHhhc-ccceEEEEeeecCCC--------------Cc---ccchhhHHHHHHHHHHHhhcCCCCeEEE
Q 029661           80 VLNP-ATSLSAIECVLD-VVDLVLIMSVNPGFG--------------GQ---SFIESQVKKISDLRRMCLEKGVNPWIEV  140 (190)
Q Consensus        80 ~i~p-~t~~~~~~~~~~-~~d~i~~m~v~pG~~--------------gq---~~~~~~~~ki~~~~~~~~~~~~~~~i~v  140 (190)
                      =... .++.+..+.+.+ .+|.|.+-+. .|..              +.   .|...+.+.|.++++.    ..+++|.+
T Consensus       185 K~~g~g~~~~~a~~L~~aGvd~I~Vsg~-gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~----~~~ipVIa  259 (333)
T TIGR02151       185 KEVGFGISKEVAKLLADAGVSAIDVAGA-GGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSD----APDAPIIA  259 (333)
T ss_pred             EecCCCCCHHHHHHHHHcCCCEEEECCC-CCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhc----CCCCeEEE
Confidence            3332 245555555544 3899877432 1211              00   0111233445554431    23578999


Q ss_pred             eCCCC-cccHHHHHHcCCCEEEEcccccCC---CCHH
Q 029661          141 DGGVG-PKNAYKVIEAGANALVAGSAVFGA---KDYA  173 (190)
Q Consensus       141 dGGI~-~e~~~~~~~aGad~~VvGsaI~~~---~dp~  173 (190)
                      +|||+ .+.+.+++..|||.+-+|+++..+   .+++
T Consensus       260 sGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~  296 (333)
T TIGR02151       260 SGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEE  296 (333)
T ss_pred             ECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHH
Confidence            99997 789999999999999999997743   4555

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]

Probab=97.60  E-value=0.00063  Score=54.16  Aligned_cols=137  Identities=23%  Similarity=0.225  Sum_probs=89.6

Q ss_pred             ecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEEEeeecCCCCc
Q 029661           33 IVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQ  112 (190)
Q Consensus        33 v~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq  112 (190)
                      +-||.... .+.-.|||.|.+-....+...++.+++.+|..|+.+-+-+|......+..++  .+..|   +++-- .=.
T Consensus       146 ivd~~QI~-~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~ralei--Gakvv---GvNNR-nL~  218 (289)
T KOG4201|consen  146 IVDPYQIY-EARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEI--GAKVV---GVNNR-NLH  218 (289)
T ss_pred             ccCHHHHH-HHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHh--CcEEE---eecCC-ccc
Confidence            44565543 3566799999887554345678899999999999999988854444333332  24444   33311 112


Q ss_pred             ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 029661          113 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK  180 (190)
Q Consensus       113 ~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~  180 (190)
                      .|.- .+..-+++-+.++   .++.+..--||. ++.+..+.++|+..+.||-++.++.||.+.+..|.
T Consensus       219 sFeV-DlstTskL~E~i~---kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~  283 (289)
T KOG4201|consen  219 SFEV-DLSTTSKLLEGIP---KDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELF  283 (289)
T ss_pred             eeee-chhhHHHHHhhCc---cceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHHHHHh
Confidence            2321 1111122222233   245555666776 89999999999999999999999999999998874

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=97.59  E-value=0.003  Score=50.80  Aligned_cols=140  Identities=14%  Similarity=0.105  Sum_probs=76.3

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHH--cCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCC----
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK--AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT----   85 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~--~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t----   85 (190)
                      ..+.+++|.+.+  |+.+.==+.+.+. ++.+..  .||+.|.+--++  .++++.+-+.+    .-+++......    
T Consensus        67 n~~~i~~i~~~~--~v~vgGGirs~e~-~~~~~~~l~~a~rvvigT~a--~~~p~~l~~~~----~vvslD~~~g~v~~~  137 (221)
T TIGR00734        67 NFSLLSKLSKRV--ELIADCGVRSPED-LETLPFTLEFASRVVVATET--LDITELLRECY----TVVSLDFKEKFLDAS  137 (221)
T ss_pred             hHHHHHHHHhhC--cEEEcCccCCHHH-HHHHHhhhccceEEeecChh--hCCHHHHHHhh----hEEEEEeECCccccc
Confidence            356777776643  3332222333332 333322  359999887664  44554332222    23444443111    


Q ss_pred             ----CHHHHHHhhcc--cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCC
Q 029661           86 ----SLSAIECVLDV--VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGAN  158 (190)
Q Consensus        86 ----~~~~~~~~~~~--~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad  158 (190)
                          +...+.+.+..  + .++++.+.  ..|....+ .++.++++++..     +.++.+.|||+ ++++.++.+.|||
T Consensus       138 g~~~~~~~~~~~~~~~g~-~ii~tdI~--~dGt~~G~-d~eli~~i~~~~-----~~pvia~GGi~s~ed~~~l~~~Ga~  208 (221)
T TIGR00734       138 GLFESLEEVRDFLNSFDY-GLIVLDIH--SVGTMKGP-NLELLTKTLELS-----EHPVMLGGGISGVEDLELLKEMGVS  208 (221)
T ss_pred             cccccHHHHHHHHHhcCC-EEEEEECC--ccccCCCC-CHHHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHHHCCCC
Confidence                11112222221  3 35555554  33332222 255556665543     36899999999 7999999999999


Q ss_pred             EEEEcccccCC
Q 029661          159 ALVAGSAVFGA  169 (190)
Q Consensus       159 ~~VvGsaI~~~  169 (190)
                      .+++||+++..
T Consensus       209 ~vivgsal~~g  219 (221)
T TIGR00734       209 AVLVATAVHKG  219 (221)
T ss_pred             EEEEhHHhhCC
Confidence            99999998753

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=97.58  E-value=0.0028  Score=50.91  Aligned_cols=135  Identities=19%  Similarity=0.246  Sum_probs=78.6

Q ss_pred             HHHHhccCCCCcEEEEEeecCh---------------HHHHHHHHHcCCCEEEEcccCCC----cchHHHHHHHHHHhCC
Q 029661           15 VVDALRPVTDLPLDVHLMIVEP---------------EQRVPDFIKAGADIVSVHCEQSS----TIHLHRTLNQIKDLGA   75 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp---------------~~~i~~~~~~Gad~v~vh~e~~~----~~~~~~~i~~i~~~g~   75 (190)
                      .+++.++..++|+.+  |+. |               .+-++.+.++|+++|.+.+-...    .+-++++++++.  |+
T Consensus        42 ~~k~a~~~~~ipv~~--MIR-PRgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~--gL  116 (241)
T COG3142          42 VIKEAVELSKIPVYV--MIR-PRGGDFVYSDDELEIMLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEAAG--GL  116 (241)
T ss_pred             HHHHHHhhcCCceEE--EEe-cCCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHcc--CC
Confidence            567776655555544  774 3               22356789999999999866421    112344444433  33


Q ss_pred             cEEE--E--EcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcc-cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccH
Q 029661           76 KAGV--V--LNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA  149 (190)
Q Consensus        76 ~~g~--~--i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~-~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~  149 (190)
                      .+-+  +  ..+ +|.+.++.+++. +..|+       ++||+ -..+.+++|+++.+.   .+-.+.|.+.|||+++|+
T Consensus       117 ~vTFHrAFD~~~-d~~~ale~li~~Gv~RIL-------TsGg~~sa~eg~~~l~~li~~---a~gri~Im~GaGV~~~N~  185 (241)
T COG3142         117 GVTFHRAFDECP-DPLEALEQLIELGVERIL-------TSGGKASALEGLDLLKRLIEQ---AKGRIIIMAGAGVRAENI  185 (241)
T ss_pred             ceeeehhhhhcC-CHHHHHHHHHHCCCcEEe-------cCCCcCchhhhHHHHHHHHHH---hcCCEEEEeCCCCCHHHH
Confidence            3222  2  223 255666665554 66665       13333 234445555544444   334588999999999999


Q ss_pred             HHH-HHcCCCEEEEcccc
Q 029661          150 YKV-IEAGANALVAGSAV  166 (190)
Q Consensus       150 ~~~-~~aGad~~VvGsaI  166 (190)
                      ..+ ...|+.-+ =||++
T Consensus       186 ~~l~~~tg~~e~-H~s~~  202 (241)
T COG3142         186 AELVLLTGVTEV-HGSAG  202 (241)
T ss_pred             HHHHHhcCchhh-hhccc
Confidence            998 67777644 35554

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=97.57  E-value=0.00034  Score=57.32  Aligned_cols=78  Identities=13%  Similarity=0.223  Sum_probs=53.4

Q ss_pred             CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661           85 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA  162 (190)
Q Consensus        85 t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv  162 (190)
                      .|.+.++.+.+. +|.+.+.-......++.   ..++-++++++..     +.++.++|||+ .+.+.++..+||+.+++
T Consensus        31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~---~n~~~i~~i~~~~-----~~pv~~~GGi~s~~d~~~~~~~Ga~~viv  102 (254)
T TIGR00735        31 DPVELAQRYDEEGADELVFLDITASSEGRT---TMIDVVERTAETV-----FIPLTVGGGIKSIEDVDKLLRAGADKVSI  102 (254)
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCCcccccCh---hhHHHHHHHHHhc-----CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence            455555555443 66666655553322222   2355555555543     36899999999 89999999999999999


Q ss_pred             cccccCCC
Q 029661          163 GSAVFGAK  170 (190)
Q Consensus       163 GsaI~~~~  170 (190)
                      ||+.++.+
T Consensus       103 gt~~~~~p  110 (254)
T TIGR00735       103 NTAAVKNP  110 (254)
T ss_pred             ChhHhhCh
Confidence            99999754

>PRK06852 aldolase; Validated

Probab=97.57  E-value=0.00018  Score=60.46  Aligned_cols=159  Identities=15%  Similarity=0.106  Sum_probs=96.8

Q ss_pred             HHHHhcc-CCCCcEEEEEeec---------ChH----HHHHHHHHcC------CCEEEEcccCCC------cchHHHHHH
Q 029661           15 VVDALRP-VTDLPLDVHLMIV---------EPE----QRVPDFIKAG------ADIVSVHCEQSS------TIHLHRTLN   68 (190)
Q Consensus        15 ~v~~i~~-~~~~~i~~hlmv~---------dp~----~~i~~~~~~G------ad~v~vh~e~~~------~~~~~~~i~   68 (190)
                      .++.... ..++++.+||=-.         +|.    .-++.+.+.|      ||.|.+|..-++      .+++.++.+
T Consensus        82 ~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~  161 (304)
T PRK06852         82 LIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIY  161 (304)
T ss_pred             HHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHH
Confidence            3444333 3567888887542         341    1278888888      889999865432      234677788


Q ss_pred             HHHHhCCcEEEEEcCCCC-------HHHHHHhhc-----ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCC
Q 029661           69 QIKDLGAKAGVVLNPATS-------LSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP  136 (190)
Q Consensus        69 ~i~~~g~~~g~~i~p~t~-------~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~  136 (190)
                      .++++|+-+...+.|.-+       .+.+.....     .+|.|=+  -.|+..+ ...++.+   +++-.-..    ..
T Consensus       162 ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv--~y~~~~~-~g~~e~f---~~vv~~~g----~v  231 (304)
T PRK06852        162 EAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKV--NYPKKEG-ANPAELF---KEAVLAAG----RT  231 (304)
T ss_pred             HHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEe--cCCCcCC-CCCHHHH---HHHHHhCC----CC
Confidence            899999998776554432       122222111     1577642  2233111 1123333   33333221    35


Q ss_pred             eEEEeCCCCcc------cHHHHHH-cCCCEEEEcccccCCCCH--HHHHHHHHHhh
Q 029661          137 WIEVDGGVGPK------NAYKVIE-AGANALVAGSAVFGAKDY--AEAIKGIKTSK  183 (190)
Q Consensus       137 ~i~vdGGI~~e------~~~~~~~-aGad~~VvGsaI~~~~dp--~~~~~~l~~~~  183 (190)
                      ++.+.||=+..      .+...++ +||.++++||.||+.++|  .+.++.+...+
T Consensus       232 pVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IV  287 (304)
T PRK06852        232 KVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAIT  287 (304)
T ss_pred             cEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHH
Confidence            78899998742      3455667 899999999999999888  78888887643

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=97.56  E-value=0.00023  Score=57.16  Aligned_cols=77  Identities=14%  Similarity=0.281  Sum_probs=55.7

Q ss_pred             CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661           85 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA  162 (190)
Q Consensus        85 t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv  162 (190)
                      .|.+.++.|.+. ++.+.+...+.-+.|+.-   .++.++++++..     +.++.++|||+ .+.++.+.++|||.+|+
T Consensus        29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~---~~~~i~~i~~~~-----~~pi~~ggGI~~~ed~~~~~~~Ga~~vvl  100 (230)
T TIGR00007        29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPV---NLPVIKKIVRET-----GVPVQVGGGIRSLEDVEKLLDLGVDRVII  100 (230)
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCccccCCCC---cHHHHHHHHHhc-----CCCEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence            566766666443 788887766643345432   244455555543     36899999999 79999999999999999


Q ss_pred             cccccCC
Q 029661          163 GSAVFGA  169 (190)
Q Consensus       163 GsaI~~~  169 (190)
                      ||+.++.
T Consensus       101 gs~~l~d  107 (230)
T TIGR00007       101 GTAAVEN  107 (230)
T ss_pred             ChHHhhC
Confidence            9998874

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PRK08185 hypothetical protein; Provisional

Probab=97.56  E-value=0.0041  Score=51.90  Aligned_cols=144  Identities=15%  Similarity=0.163  Sum_probs=95.0

Q ss_pred             HHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEEcC----
Q 029661           16 VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVLNP----   83 (190)
Q Consensus        16 v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i~p----   83 (190)
                      ++.+.+..++|+.+||==..-.+.++.+.+.|.+.|.+=....+. ++   -.++++.++.+|+.+    |. +..    
T Consensus        60 ~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~-vg~~e~~  138 (283)
T PRK08185         60 VRERAKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGT-IGNTGTS  138 (283)
T ss_pred             HHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee-ccCcccc
Confidence            334444468899999855444557888999999998885432221 22   245566667777654    33 211    


Q ss_pred             ---------CCCHHHHHHhhcc--cceEEE-----EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--
Q 029661           84 ---------ATSLSAIECVLDV--VDLVLI-----MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--  145 (190)
Q Consensus        84 ---------~t~~~~~~~~~~~--~d~i~~-----m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--  145 (190)
                               -|+.+..+++.+.  +|++.+     .+++++.. .  ..-.+++++++++..     ++++..-||++  
T Consensus       139 ~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~-k--p~L~~e~l~~I~~~~-----~iPLVlHGgsg~~  210 (283)
T PRK08185        139 IEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDK-K--PELQMDLLKEINERV-----DIPLVLHGGSANP  210 (283)
T ss_pred             cccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCC-C--CCcCHHHHHHHHHhh-----CCCEEEECCCCCC
Confidence                     3456666777653  898876     44444311 1  112377777777654     47899999987  


Q ss_pred             cccHHHHHHcCCCEEEEcccccC
Q 029661          146 PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       146 ~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      .+.++++++.|+.-+=++|.+..
T Consensus       211 ~e~~~~ai~~GI~KiNi~T~l~~  233 (283)
T PRK08185        211 DAEIAESVQLGVGKINISSDMKY  233 (283)
T ss_pred             HHHHHHHHHCCCeEEEeChHHHH
Confidence            48999999999999999998865

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=97.56  E-value=0.0028  Score=54.20  Aligned_cols=123  Identities=20%  Similarity=0.296  Sum_probs=79.0

Q ss_pred             HHHHcCCCEEEEcccCC--------------------Cc----chHHHHHHHHHHh-CC-cEEEEEcCCC---------C
Q 029661           42 DFIKAGADIVSVHCEQS--------------------ST----IHLHRTLNQIKDL-GA-KAGVVLNPAT---------S   86 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e~~--------------------~~----~~~~~~i~~i~~~-g~-~~g~~i~p~t---------~   86 (190)
                      .+.++|+|+|-+|.-.+                    +.    .-+.++++++|+. |. .+++=+++..         +
T Consensus       160 ~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~  239 (338)
T cd02933         160 NAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDP  239 (338)
T ss_pred             HHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCC
Confidence            45778999999985431                    00    1245888889884 54 4666676531         2


Q ss_pred             HHH---HHHhhcc--cceEEEEeeecC-CCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC-CCE
Q 029661           87 LSA---IECVLDV--VDLVLIMSVNPG-FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANA  159 (190)
Q Consensus        87 ~~~---~~~~~~~--~d~i~~m~v~pG-~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG-ad~  159 (190)
                      .+.   +.+.++.  +|+|-+   ..| +..+. ....++..+++|+..     +.++.+.|||+++++.++++.| +|.
T Consensus       240 ~ee~~~~~~~l~~~g~d~i~v---s~g~~~~~~-~~~~~~~~~~ik~~~-----~ipvi~~G~i~~~~a~~~l~~g~~D~  310 (338)
T cd02933         240 EATFSYLAKELNKRGLAYLHL---VEPRVAGNP-EDQPPDFLDFLRKAF-----KGPLIAAGGYDAESAEAALADGKADL  310 (338)
T ss_pred             HHHHHHHHHHHHHcCCcEEEE---ecCCCCCcc-cccchHHHHHHHHHc-----CCCEEEECCCCHHHHHHHHHcCCCCE
Confidence            232   2233322  688765   112 22222 223345556666654     3689999999999999999876 999


Q ss_pred             EEEcccccCCCCHH
Q 029661          160 LVAGSAVFGAKDYA  173 (190)
Q Consensus       160 ~VvGsaI~~~~dp~  173 (190)
                      +-+||++...++.-
T Consensus       311 V~~gR~~ladP~~~  324 (338)
T cd02933         311 VAFGRPFIANPDLV  324 (338)
T ss_pred             EEeCHhhhhCcCHH
Confidence            99999998877654

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=97.56  E-value=0.0029  Score=56.10  Aligned_cols=141  Identities=18%  Similarity=0.224  Sum_probs=93.2

Q ss_pred             HHHHHHhccC-CCCcEEEEEeecCh-----------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661           13 PLVVDALRPV-TDLPLDVHLMIVEP-----------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        13 ~~~v~~i~~~-~~~~i~~hlmv~dp-----------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      .+.++.+++. ++.++-..+-..|.           ..+++.+.++|+|.+.+-.......++...++.+|++|..+.+.
T Consensus        63 ~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~  142 (448)
T PRK12331         63 WERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVA  142 (448)
T ss_pred             HHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEE
Confidence            3577888775 67777655543332           34678899999999887644322456888999999999887554


Q ss_pred             Ec----CCCCHHHHHHhh----c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcc
Q 029661           81 LN----PATSLSAIECVL----D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK  147 (190)
Q Consensus        81 i~----p~t~~~~~~~~~----~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e  147 (190)
                      ++    |-++.+.+.+++    + .+|.|.+    ....|-..+..+.+.++.+|+..     +.+|.+    +.|...-
T Consensus       143 i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i----~Dt~G~l~P~~v~~lv~alk~~~-----~~pi~~H~Hnt~GlA~A  213 (448)
T PRK12331        143 ISYTTSPVHTIDYFVKLAKEMQEMGADSICI----KDMAGILTPYVAYELVKRIKEAV-----TVPLEVHTHATSGIAEM  213 (448)
T ss_pred             EEeecCCCCCHHHHHHHHHHHHHcCCCEEEE----cCCCCCCCHHHHHHHHHHHHHhc-----CCeEEEEecCCCCcHHH
Confidence            43    334444444433    2 2676654    34456555566677777777654     256666    7788877


Q ss_pred             cHHHHHHcCCCEEEE
Q 029661          148 NAYKVIEAGANALVA  162 (190)
Q Consensus       148 ~~~~~~~aGad~~Vv  162 (190)
                      |.-..+++|||++=+
T Consensus       214 N~laAieaGad~vD~  228 (448)
T PRK12331        214 TYLKAIEAGADIIDT  228 (448)
T ss_pred             HHHHHHHcCCCEEEe
Confidence            888889999997643

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.55  E-value=0.00017  Score=58.25  Aligned_cols=75  Identities=16%  Similarity=0.329  Sum_probs=52.6

Q ss_pred             CCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEc
Q 029661           85 TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG  163 (190)
Q Consensus        85 t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvG  163 (190)
                      +|.+.++.|.+.++.+.+...+-...|+.-   -++-++++++.     ...++.++|||+ .+.++.+.+.|+|.+|+|
T Consensus        31 dp~~~a~~~~~~~~~l~ivDldga~~g~~~---n~~~i~~i~~~-----~~~pv~~gGGIrs~edv~~l~~~G~~~vivG  102 (228)
T PRK04128         31 DPVEIALRFSEYVDKIHVVDLDGAFEGKPK---NLDVVKNIIRE-----TGLKVQVGGGLRTYESIKDAYEIGVENVIIG  102 (228)
T ss_pred             CHHHHHHHHHHhCCEEEEEECcchhcCCcc---hHHHHHHHHhh-----CCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence            567766776555787777555422234322   24444554443     246899999999 799999999999999999


Q ss_pred             cccc
Q 029661          164 SAVF  167 (190)
Q Consensus       164 saI~  167 (190)
                      |+.+
T Consensus       103 taa~  106 (228)
T PRK04128        103 TKAF  106 (228)
T ss_pred             chhc
Confidence            9988

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=97.53  E-value=0.011  Score=48.03  Aligned_cols=130  Identities=16%  Similarity=0.286  Sum_probs=85.1

Q ss_pred             CCCcEEEEEeecChHHHHHHH--HHcCCCEEEEcccC----------CC-----cchHHHHHHHHHHhCCcEEEEEcCCC
Q 029661           23 TDLPLDVHLMIVEPEQRVPDF--IKAGADIVSVHCEQ----------SS-----TIHLHRTLNQIKDLGAKAGVVLNPAT   85 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~i~~~--~~~Gad~v~vh~e~----------~~-----~~~~~~~i~~i~~~g~~~g~~i~p~t   85 (190)
                      .+.|+.+.++-.+|+.+.+.+  .+.+++.+=+-..+          ++     .+.+.++++++|+.++.+.+=+.+..
T Consensus        71 ~~~p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~  150 (233)
T cd02911          71 SNVLVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGV  150 (233)
T ss_pred             cCCeEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            467999999999998775443  23356777763221          00     22347788889888888777676654


Q ss_pred             --CHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661           86 --SLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        86 --~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                        +...+.+.+.  .+|.+-+-+..+|      .+..++.|++++       .+++|..-|||+ .+.+.++.+.|||.+
T Consensus       151 ~~~~~~la~~l~~aG~d~ihv~~~~~g------~~ad~~~I~~i~-------~~ipVIgnGgI~s~eda~~~l~~GaD~V  217 (233)
T cd02911         151 DVDDEELARLIEKAGADIIHVDAMDPG------NHADLKKIRDIS-------TELFIIGNNSVTTIESAKEMFSYGADMV  217 (233)
T ss_pred             CcCHHHHHHHHHHhCCCEEEECcCCCC------CCCcHHHHHHhc-------CCCEEEEECCcCCHHHHHHHHHcCCCEE
Confidence              2333333333  2786543222222      122355566654       246888999997 799999999999999


Q ss_pred             EEccc
Q 029661          161 VAGSA  165 (190)
Q Consensus       161 VvGsa  165 (190)
                      -+||+
T Consensus       218 miGR~  222 (233)
T cd02911         218 SVARA  222 (233)
T ss_pred             EEcCC
Confidence            99999

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=97.53  E-value=0.0036  Score=53.05  Aligned_cols=125  Identities=18%  Similarity=0.185  Sum_probs=78.4

Q ss_pred             HHHHHHHHcC--CCEEEEcccCCCcchHHHHHHHHHHhCCcEEE-EEcCCCCHHHHHHhhc-ccceEEEEeeecCCC---
Q 029661           38 QRVPDFIKAG--ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLD-VVDLVLIMSVNPGFG---  110 (190)
Q Consensus        38 ~~i~~~~~~G--ad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~-~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~---  110 (190)
                      +.++.+.++|  +|.|.+-.-.+.....-+.++.+|+.--.+.+ .=|. .+.+..+.+++ .+|.|.+ ++.||..   
T Consensus        97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV-~t~e~a~~l~~aGad~I~V-~~G~G~~~~t  174 (321)
T TIGR01306        97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNV-GTPEAVRELENAGADATKV-GIGPGKVCIT  174 (321)
T ss_pred             HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecC-CCHHHHHHHHHcCcCEEEE-CCCCCccccc
Confidence            4577789988  79988844322234466678888875422322 2223 34455566554 3788763 4445431   


Q ss_pred             ----CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          111 ----GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       111 ----gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                          |..+....+.-|.++++..     +.+|..||||+ ..++.+++.+|||.+-+||.+-..
T Consensus       175 r~~~g~g~~~~~l~ai~ev~~a~-----~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~  233 (321)
T TIGR01306       175 KIKTGFGTGGWQLAALRWCAKAA-----RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGH  233 (321)
T ss_pred             eeeeccCCCchHHHHHHHHHHhc-----CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCc
Confidence                1122222344566665532     36899999999 578889999999999999987653

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.50  E-value=0.00061  Score=56.70  Aligned_cols=91  Identities=18%  Similarity=0.273  Sum_probs=62.4

Q ss_pred             hHHHHHHHHHHhC---CcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCe
Q 029661           62 HLHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW  137 (190)
Q Consensus        62 ~~~~~i~~i~~~g---~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~  137 (190)
                      .+.+.++.+|++.   .++-+-+  + .++.+.+.++ .+|.|++       +.  |.+   +.++++.++++.   ..+
T Consensus       179 ~i~~ai~~~r~~~~~~~kIeVEv--~-tleea~ea~~~gaDiI~L-------Dn--~s~---e~l~~av~~~~~---~~~  240 (281)
T PRK06106        179 GVREAIRRARAGVGHLVKIEVEV--D-TLDQLEEALELGVDAVLL-------DN--MTP---DTLREAVAIVAG---RAI  240 (281)
T ss_pred             cHHHHHHHHHHhCCCCCcEEEEe--C-CHHHHHHHHHcCCCEEEe-------CC--CCH---HHHHHHHHHhCC---Cce
Confidence            4778888888863   3444444  3 4455556554 4898875       22  333   344555554433   356


Q ss_pred             EEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661          138 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       138 i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      +++.||||++|++++.+.|+|++++|+...+++
T Consensus       241 leaSGGI~~~ni~~yA~tGVD~Is~Galthsa~  273 (281)
T PRK06106        241 TEASGRITPETAPAIAASGVDLISVGWLTHSAP  273 (281)
T ss_pred             EEEECCCCHHHHHHHHhcCCCEEEeChhhcCCC
Confidence            999999999999999999999999999766553

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=97.49  E-value=0.00071  Score=54.81  Aligned_cols=79  Identities=14%  Similarity=0.268  Sum_probs=54.6

Q ss_pred             CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661           83 PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        83 p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      ..+|.+..+.+.++ +.++-+.-.+-.+.|++-.   .+-|+++.+..     +.+++|.|||+ .+.+..+.++|++-+
T Consensus        30 ~~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n---~~~i~~i~~~~-----~~~vQvGGGIRs~~~v~~ll~~G~~rV  101 (241)
T COG0106          30 SDDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRN---LEAIKEILEAT-----DVPVQVGGGIRSLEDVEALLDAGVARV  101 (241)
T ss_pred             cCCHHHHHHHHHHcCCcEEEEeeccccccCCccc---HHHHHHHHHhC-----CCCEEeeCCcCCHHHHHHHHHCCCCEE
Confidence            35677777777653 6666555555444444333   33344444443     46899999999 799999999999999


Q ss_pred             EEcccccCC
Q 029661          161 VAGSAVFGA  169 (190)
Q Consensus       161 VvGsaI~~~  169 (190)
                      |+||.-++.
T Consensus       102 iiGt~av~~  110 (241)
T COG0106         102 IIGTAAVKN  110 (241)
T ss_pred             EEecceecC
Confidence            999987653

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.47  E-value=0.00053  Score=56.07  Aligned_cols=79  Identities=14%  Similarity=0.255  Sum_probs=56.3

Q ss_pred             CCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661           84 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV  161 (190)
Q Consensus        84 ~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V  161 (190)
                      ..|.+..+.+.+ .++.+.+........++   +..++-++++++..     ++++.++|||+ .+++.++.+.|+|.++
T Consensus        30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~-----~ipv~~~GGi~s~~~~~~~l~~Ga~~Vi  101 (253)
T PRK02083         30 GDPVELAKRYNEEGADELVFLDITASSEGR---DTMLDVVERVAEQV-----FIPLTVGGGIRSVEDARRLLRAGADKVS  101 (253)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCcccccC---cchHHHHHHHHHhC-----CCCEEeeCCCCCHHHHHHHHHcCCCEEE
Confidence            355666666543 36777776665422222   34466666666543     47899999999 7999999999999999


Q ss_pred             EcccccCCC
Q 029661          162 AGSAVFGAK  170 (190)
Q Consensus       162 vGsaI~~~~  170 (190)
                      +||+.++.+
T Consensus       102 igt~~l~~p  110 (253)
T PRK02083        102 INSAAVANP  110 (253)
T ss_pred             EChhHhhCc
Confidence            999998854

>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=97.46  E-value=0.0016  Score=52.77  Aligned_cols=162  Identities=20%  Similarity=0.291  Sum_probs=98.0

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------------CcchHHHHHHHHHHhCCcEEEE
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------------~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      +-+..|++....++..-+  +--.++++.+.+...+.+|+-+|.-             ..+.+..+++.+++.|+++.++
T Consensus        53 ~Dv~~L~~~~~~~lNlE~--a~t~e~~~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLF  130 (239)
T PF03740_consen   53 RDVRRLRELVKTPLNLEM--APTEEMVDIALKVKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLF  130 (239)
T ss_dssp             HHHHHHHHH-SSEEEEEE--ESSHHHHHHHHHH--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEE
T ss_pred             HHHHHHHHHcccCEEecc--CCCHHHHHHHHhCCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEE
Confidence            346667776556655533  3235688899999999999976541             0134789999999999999999


Q ss_pred             EcCCCC-HHHHHHhhcccceEEEEeeecCCCCcccc-----h-hhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHH
Q 029661           81 LNPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSFI-----E-SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI  153 (190)
Q Consensus        81 i~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~~-----~-~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~  153 (190)
                      +.|+.. ++...++  .+|+|-+   +.|.....+.     . +.++++.....+..+.  .+.+.++.|+|.+|++.+.
T Consensus       131 iDP~~~qi~~A~~~--Gad~VEL---hTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~l--GL~VnAGHgL~y~N~~~i~  203 (239)
T PF03740_consen  131 IDPDPEQIEAAKEL--GADRVEL---HTGPYANAFDDAEEAEEELLERLRDAARYAHEL--GLGVNAGHGLNYDNVRPIA  203 (239)
T ss_dssp             E-S-HHHHHHHHHT--T-SEEEE---ETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHT--T-EEEEETT--TTTHHHHH
T ss_pred             eCCCHHHHHHHHHc--CCCEEEE---ehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHc--CCEEecCCCCCHHHHHHHH
Confidence            998633 2333332  4899976   4443333331     1 1246666666665554  4678999999999999886


Q ss_pred             Hc-CCCEEEEcccccCC---CCHHHHHHHHHHhhc
Q 029661          154 EA-GANALVAGSAVFGA---KDYAEAIKGIKTSKR  184 (190)
Q Consensus       154 ~a-Gad~~VvGsaI~~~---~dp~~~~~~l~~~~~  184 (190)
                      +. +..-+-+|-+|+..   --..++++++++.++
T Consensus       204 ~i~~i~EvnIGHaiia~Al~~Gl~~aV~~m~~~~~  238 (239)
T PF03740_consen  204 AIPPIEEVNIGHAIIARALFVGLEEAVREMKELMK  238 (239)
T ss_dssp             TSTTEEEEEE-HHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             hCCCceEEecCHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            54 35667788887753   256778888887765

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=97.45  E-value=0.0049  Score=52.35  Aligned_cols=126  Identities=17%  Similarity=0.270  Sum_probs=79.5

Q ss_pred             HHHHHHHcC--CCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCC--CCc
Q 029661           39 RVPDFIKAG--ADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQ  112 (190)
Q Consensus        39 ~i~~~~~~G--ad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~--~gq  112 (190)
                      .++.+.++|  +|.+++-.-.+..+..-+.++++|+.- -...++=|..|+-. .+.+++ .+|.|.+ ++=||.  +++
T Consensus       111 r~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~-a~~Li~aGAD~ikV-giGpGSicttR  188 (343)
T TIGR01305       111 KMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEM-VEELILSGADIVKV-GIGPGSVCTTR  188 (343)
T ss_pred             HHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHH-HHHHHHcCCCEEEE-cccCCCcccCc
Confidence            467788885  999998433322345667788888753 23333444555543 445444 5887754 544552  222


Q ss_pred             ccc--h-hhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661          113 SFI--E-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       113 ~~~--~-~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      ...  + ..+.-+.+..+...  ++..+|..||||+ ..++.+.+.+|||.+-+|+.+-.
T Consensus       189 ~~~Gvg~pqltAv~~~a~aa~--~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG  246 (343)
T TIGR01305       189 TKTGVGYPQLSAVIECADAAH--GLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAG  246 (343)
T ss_pred             eeCCCCcCHHHHHHHHHHHhc--cCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhC
Confidence            221  1 23555555555543  2457899999999 67888999999999999976654

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B

Probab=97.45  E-value=0.002  Score=54.20  Aligned_cols=52  Identities=23%  Similarity=0.281  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhhcC-CCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661          119 VKKISDLRRMCLEKG-VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       119 ~~ki~~~~~~~~~~~-~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~  170 (190)
                      .+-++++++.++..+ .+..|++.||||++++.++.+.|+|++=+||.+.+++
T Consensus       228 ~~~~~~~~~~l~~~g~~~~~ieaSGgI~~~~i~~~a~~gvD~isvGs~~~~~~  280 (302)
T cd01571         228 RYLIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVGVDAFGVGTAISKAP  280 (302)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHcCCCEEECCcccCCCC
Confidence            334455555555443 4578999999999999999999999999999998763

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=97.44  E-value=0.0016  Score=55.70  Aligned_cols=143  Identities=17%  Similarity=0.235  Sum_probs=96.6

Q ss_pred             HHHHHhccCCCCc------------EEEEEeec--Ch-HHHHHHHHHc-CCCEEEEcccCCCcchHHHHHHHHHHhCCcE
Q 029661           14 LVVDALRPVTDLP------------LDVHLMIV--EP-EQRVPDFIKA-GADIVSVHCEQSSTIHLHRTLNQIKDLGAKA   77 (190)
Q Consensus        14 ~~v~~i~~~~~~~------------i~~hlmv~--dp-~~~i~~~~~~-Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~   77 (190)
                      ..+++++..++.|            +-+.+++.  ++ ....+.+++. |.-.++++.-.    .+...++.++..|.++
T Consensus        55 ~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~----~~~~~i~~~~~~g~~v  130 (336)
T COG2070          55 AEIRKIRALTDKPFVANNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGA----PPAEFVARLKAAGIKV  130 (336)
T ss_pred             HHHHHHHHhcCCcchhcccccccccchhheecccccchHHhhhhHHhcCCCCEEeccCCC----CcHHHHHHHHHcCCeE
Confidence            4556666666666            44445552  22 3455655555 88888887642    3677899999999887


Q ss_pred             EEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCC-Cc-ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHH
Q 029661           78 GVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG-GQ-SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI  153 (190)
Q Consensus        78 g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~-gq-~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~  153 (190)
                      ...+.   ..++.+.... -+|.|+..+-+.|.- |. ...+.+...+.++++....    +++...|||- .+.+....
T Consensus       131 ~~~v~---~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~----iPViAAGGI~dg~~i~AAl  203 (336)
T COG2070         131 IHSVI---TVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG----IPVIAAGGIADGRGIAAAL  203 (336)
T ss_pred             EEEeC---CHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcC----CCEEEecCccChHHHHHHH
Confidence            76653   4555555433 378887766654421 32 2245567777777776531    7899999999 68888889


Q ss_pred             HcCCCEEEEccccc
Q 029661          154 EAGANALVAGSAVF  167 (190)
Q Consensus       154 ~aGad~~VvGsaI~  167 (190)
                      ..|||.+-+||...
T Consensus       204 alGA~gVq~GT~Fl  217 (336)
T COG2070         204 ALGADGVQMGTRFL  217 (336)
T ss_pred             HhccHHHHhhhhhh
Confidence            99999999999755

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=97.42  E-value=0.014  Score=49.57  Aligned_cols=144  Identities=10%  Similarity=0.168  Sum_probs=91.2

Q ss_pred             CCCcEEEEEeecChHHHHHH---HHHcCCCEEEEcccCC---------------CcchHHHHHHHHHHh-CCcEEEEEcC
Q 029661           23 TDLPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNP   83 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~i~~---~~~~Gad~v~vh~e~~---------------~~~~~~~~i~~i~~~-g~~~g~~i~p   83 (190)
                      .+.|+.+.|.-.||+.+.+.   +.+.|+|.|=++.-+.               ..+-+.++++++++. +..+.+=+..
T Consensus        53 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~  132 (318)
T TIGR00742        53 EESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRI  132 (318)
T ss_pred             CCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            46799999999999887543   4567999999875431               012256788888874 6666665544


Q ss_pred             CC----CHHHHHHh---hc--ccceEEEEeeec---CCCCcc---cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cc
Q 029661           84 AT----SLSAIECV---LD--VVDLVLIMSVNP---GFGGQS---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PK  147 (190)
Q Consensus        84 ~t----~~~~~~~~---~~--~~d~i~~m~v~p---G~~gq~---~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e  147 (190)
                      ..    +.+...++   +.  .+|.|.+.+...   |++|..   ..+..++.++++++...    ++++..-|||. .+
T Consensus       133 g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~----~ipVi~NGdI~s~~  208 (318)
T TIGR00742       133 GIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP----HLTIEINGGIKNSE  208 (318)
T ss_pred             CCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC----CCcEEEECCcCCHH
Confidence            21    11222222   22  267765543322   223321   22334666666665432    47888899998 78


Q ss_pred             cHHHHHHcCCCEEEEcccccCCCC
Q 029661          148 NAYKVIEAGANALVAGSAVFGAKD  171 (190)
Q Consensus       148 ~~~~~~~aGad~~VvGsaI~~~~d  171 (190)
                      ++.++.+ |+|.+-+|++.+..+.
T Consensus       209 da~~~l~-g~dgVMigRgal~nP~  231 (318)
T TIGR00742       209 QIKQHLS-HVDGVMVGREAYENPY  231 (318)
T ss_pred             HHHHHHh-CCCEEEECHHHHhCCH
Confidence            8888875 9999999999887543

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK06256 biotin synthase; Validated

Probab=97.41  E-value=0.019  Score=48.69  Aligned_cols=161  Identities=20%  Similarity=0.202  Sum_probs=92.7

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc------------chHHHHHHHHHHhCCcEE--E
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST------------IHLHRTLNQIKDLGAKAG--V   79 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~------------~~~~~~i~~i~~~g~~~g--~   79 (190)
                      +.++.|++.+++.+.+++-..+ .+.++.+.++|++.+++..|+ +.            ++..+.++.+++.|+++.  +
T Consensus       130 e~i~~i~~~~~i~~~~~~g~l~-~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~  207 (336)
T PRK06256        130 EAVKAIKEETDLEICACLGLLT-EEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGG  207 (336)
T ss_pred             HHHHHHHhcCCCcEEecCCcCC-HHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCe
Confidence            4466666545544444433333 346788999999999887665 21            223467788888898875  3


Q ss_pred             EEcCCCCHHHHHHhh---c--ccceEEEEeee--cCCC--Cccc--chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--c
Q 029661           80 VLNPATSLSAIECVL---D--VVDLVLIMSVN--PGFG--GQSF--IESQVKKISDLRRMCLEKGVNPWIEVDGGVG--P  146 (190)
Q Consensus        80 ~i~p~t~~~~~~~~~---~--~~d~i~~m~v~--pG~~--gq~~--~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~  146 (190)
                      .+......+...+.+   .  .+|.+.+....  ||+.  .++.  ..+.++.+.-+|-+.+    +..|.+.||=.  .
T Consensus       208 I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p----~~~I~~~~gr~~~~  283 (336)
T PRK06256        208 IIGMGESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINP----DKEIRIAGGREVNL  283 (336)
T ss_pred             EEeCCCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CCeeEecCchhhhc
Confidence            443443433333322   2  25666554443  5643  2221  2344555566666654    35687888863  3


Q ss_pred             ccHH-HHHHcCCCEEEEcccccCC-CCHHHHHHHHHH
Q 029661          147 KNAY-KVIEAGANALVAGSAVFGA-KDYAEAIKGIKT  181 (190)
Q Consensus       147 e~~~-~~~~aGad~~VvGsaI~~~-~dp~~~~~~l~~  181 (190)
                      .... ... +|||.+++|-+++.. .++.+-.+-+++
T Consensus       284 ~~~~~~~~-~g~~~~~~g~~lt~~g~~~~~d~~~~~~  319 (336)
T PRK06256        284 RSLQPLGL-GGANSVIVGNYLTTVGQPATADLDMIED  319 (336)
T ss_pred             hhhHHHHh-ccCceeeECCcccCCCCChHHHHHHHHH
Confidence            3333 334 799999999999865 445444444443

>PLN02979 glycolate oxidase

Probab=97.41  E-value=0.0018  Score=55.73  Aligned_cols=122  Identities=18%  Similarity=0.288  Sum_probs=78.0

Q ss_pred             cccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC
Q 029661            4 RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP   83 (190)
Q Consensus         4 ~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p   83 (190)
                      .|.|.+  ..+.++.||+.++.|+.+.=- .++ +..+.+.++|+|.|.+-.--  .          ++           
T Consensus       205 ~~~~~l--tW~dl~wlr~~~~~PvivKgV-~~~-~dA~~a~~~Gvd~I~VsnhG--G----------rq-----------  257 (366)
T PLN02979        205 QIDRTL--SWKDVQWLQTITKLPILVKGV-LTG-EDARIAIQAGAAGIIVSNHG--A----------RQ-----------  257 (366)
T ss_pred             cCCCCC--CHHHHHHHHhccCCCEEeecC-CCH-HHHHHHHhcCCCEEEECCCC--c----------CC-----------
Confidence            344544  447799999888888888432 343 35667888999998874331  1          00           


Q ss_pred             CCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661           84 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA  162 (190)
Q Consensus        84 ~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv  162 (190)
                                   .|               ..+.+++-+.++++....   +++|.+||||+ ..++-+....|||.+-+
T Consensus       258 -------------ld---------------~~p~t~~~L~ei~~~~~~---~~~Vi~dGGIr~G~Di~KALALGAdaV~i  306 (366)
T PLN02979        258 -------------LD---------------YVPATISALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFI  306 (366)
T ss_pred             -------------CC---------------CchhHHHHHHHHHHHhCC---CCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence                         01               113455566666655432   46899999999 46788888999999999


Q ss_pred             ccccc-C--C---CCHHHHHHHHHHhh
Q 029661          163 GSAVF-G--A---KDYAEAIKGIKTSK  183 (190)
Q Consensus       163 GsaI~-~--~---~dp~~~~~~l~~~~  183 (190)
                      |+.+. .  +   +.....++.+++.+
T Consensus       307 Grp~L~~la~~G~~Gv~~~l~~l~~El  333 (366)
T PLN02979        307 GRPVVFSLAAEGEAGVRKVLQMLRDEF  333 (366)
T ss_pred             cHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            99754 2  1   23345555555543

>PLN02826 dihydroorotate dehydrogenase

Probab=97.41  E-value=0.0086  Score=52.51  Aligned_cols=140  Identities=20%  Similarity=0.222  Sum_probs=89.5

Q ss_pred             cEEEEEeec-----ChHHHHHHHHHcC--CCEEEEcccCCC---------cchHHHHHHHHHHh----------CCcEEE
Q 029661           26 PLDVHLMIV-----EPEQRVPDFIKAG--ADIVSVHCEQSS---------TIHLHRTLNQIKDL----------GAKAGV   79 (190)
Q Consensus        26 ~i~~hlmv~-----dp~~~i~~~~~~G--ad~v~vh~e~~~---------~~~~~~~i~~i~~~----------g~~~g~   79 (190)
                      ++-+-+--+     .+++|.+.+..++  ||++.+-..+..         .+.+.++++.+++.          .+.+.+
T Consensus       188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~v  267 (409)
T PLN02826        188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLV  267 (409)
T ss_pred             eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence            566655333     2567876665555  999998644310         12345666665532          234455


Q ss_pred             EEcCCCCHHHHHHhhc-----ccceEEEEee---------------e-cCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661           80 VLNPATSLSAIECVLD-----VVDLVLIMSV---------------N-PGFGGQSFIESQVKKISDLRRMCLEKGVNPWI  138 (190)
Q Consensus        80 ~i~p~t~~~~~~~~~~-----~~d~i~~m~v---------------~-pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i  138 (190)
                      =+.|+.+.+.+.++++     .+|-|.+--.               . -|.+|....+..++-++++++..+   .+++|
T Consensus       268 KlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~---~~ipI  344 (409)
T PLN02826        268 KIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTR---GKIPL  344 (409)
T ss_pred             ecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhC---CCCcE
Confidence            5878876544444332     2666644210               1 134566666777888888777654   24789


Q ss_pred             EEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661          139 EVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       139 ~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      ...|||. .+++-+.+.+||+.+=+||+++.
T Consensus       345 IgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~  375 (409)
T PLN02826        345 VGCGGVSSGEDAYKKIRAGASLVQLYTAFAY  375 (409)
T ss_pred             EEECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence            9999999 68999999999999999999765

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=97.39  E-value=0.0028  Score=56.38  Aligned_cols=140  Identities=18%  Similarity=0.182  Sum_probs=93.4

Q ss_pred             HHHHHHhccC-CCCcEEEEEeecC-------h----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661           13 PLVVDALRPV-TDLPLDVHLMIVE-------P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        13 ~~~v~~i~~~-~~~~i~~hlmv~d-------p----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      .+.++.+++. ++.++.+.+-..|       |    ..|++.+.++|+|.+.+-......+++...++.+|+.|..+...
T Consensus        62 ~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~  141 (467)
T PRK14041         62 WERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGA  141 (467)
T ss_pred             HHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEE
Confidence            4677888775 6777776555433       2    34688899999998887644322456788999999999988755


Q ss_pred             Ec----CCCCHHHHHHhhc-----ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcc
Q 029661           81 LN----PATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK  147 (190)
Q Consensus        81 i~----p~t~~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e  147 (190)
                      ++    |.++.+.+.++..     .+|.|.+    ....|...+..+.+.++.+|+..+     .+|.+    +-|...-
T Consensus       142 i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i----~Dt~G~l~P~~v~~Lv~~lk~~~~-----vpI~~H~Hnt~GlA~A  212 (467)
T PRK14041        142 ISYTVSPVHTLEYYLEFARELVDMGVDSICI----KDMAGLLTPKRAYELVKALKKKFG-----VPVEVHSHCTTGLASL  212 (467)
T ss_pred             EEeccCCCCCHHHHHHHHHHHHHcCCCEEEE----CCccCCcCHHHHHHHHHHHHHhcC-----CceEEEecCCCCcHHH
Confidence            43    5555555444433     2676654    344565556666777777776542     34543    5667667


Q ss_pred             cHHHHHHcCCCEEE
Q 029661          148 NAYKVIEAGANALV  161 (190)
Q Consensus       148 ~~~~~~~aGad~~V  161 (190)
                      |.-..+++|||++=
T Consensus       213 N~laAieaGad~vD  226 (467)
T PRK14041        213 AYLAAVEAGADMFD  226 (467)
T ss_pred             HHHHHHHhCCCEEE
Confidence            78788999999763

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=97.38  E-value=0.0056  Score=51.14  Aligned_cols=144  Identities=18%  Similarity=0.219  Sum_probs=90.4

Q ss_pred             CCcEEEEEeecC---hHHHHHHH--HHcCCCEEEEcccCCC----------cchHHHHHHHHHHh-CCcEEEEEcCCCC-
Q 029661           24 DLPLDVHLMIVE---PEQRVPDF--IKAGADIVSVHCEQSS----------TIHLHRTLNQIKDL-GAKAGVVLNPATS-   86 (190)
Q Consensus        24 ~~~i~~hlmv~d---p~~~i~~~--~~~Gad~v~vh~e~~~----------~~~~~~~i~~i~~~-g~~~g~~i~p~t~-   86 (190)
                      ++|+.+-+.-..   .++|.+.+  .+.|||.+.+-..+..          .+....+++..++. .+.+.+=+.|+.+ 
T Consensus        96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~  175 (295)
T PF01180_consen   96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTD  175 (295)
T ss_dssp             CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSC
T ss_pred             ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCc
Confidence            568888666665   67776654  3389999998533210          11234455566665 5666777998644 


Q ss_pred             HH---HHHHhh-cccceEE----EEeee----------c-----CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC
Q 029661           87 LS---AIECVL-DVVDLVL----IMSVN----------P-----GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG  143 (190)
Q Consensus        87 ~~---~~~~~~-~~~d~i~----~m~v~----------p-----G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG  143 (190)
                      .+   .+.... ..+|.|.    +....          +     |.+|....|..++.++++++..++   +++|...||
T Consensus       176 ~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~---~i~Iig~GG  252 (295)
T PF01180_consen  176 IEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQ---DIPIIGVGG  252 (295)
T ss_dssp             HHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTT---SSEEEEESS
T ss_pred             hHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhcccc---ceEEEEeCC
Confidence            32   222222 2366655    21111          1     135556667788888888887652   488999999


Q ss_pred             CC-cccHHHHHHcCCCEEEEcccc-cCCC
Q 029661          144 VG-PKNAYKVIEAGANALVAGSAV-FGAK  170 (190)
Q Consensus       144 I~-~e~~~~~~~aGad~~VvGsaI-~~~~  170 (190)
                      |. .+++.+++.+|||.+=++|++ ++.+
T Consensus       253 I~s~~da~e~l~aGA~~Vqv~Sal~~~Gp  281 (295)
T PF01180_consen  253 IHSGEDAIEFLMAGASAVQVCSALIYRGP  281 (295)
T ss_dssp             --SHHHHHHHHHHTESEEEESHHHHHHGT
T ss_pred             cCCHHHHHHHHHhCCCHheechhhhhcCc
Confidence            99 799999999999999999998 5544

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>PRK07188 nicotinate phosphoribosyltransferase; Provisional

Probab=97.38  E-value=0.0034  Score=53.93  Aligned_cols=100  Identities=20%  Similarity=0.185  Sum_probs=64.2

Q ss_pred             chHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcC-CCCeEE
Q 029661           61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG-VNPWIE  139 (190)
Q Consensus        61 ~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~-~~~~i~  139 (190)
                      +++.+.++.++..|.++ ..+..+|+-+.+.+++...+..+     ......-+   ..+.++++|+.+++.+ .++.|.
T Consensus       214 d~~~~al~~a~~~g~~l-~gVRlDs~gdl~DK~~~~~~~~~-----~~~~~~G~---~~~l~~~vr~~Ld~~g~~~vkI~  284 (352)
T PRK07188        214 DVITDSLKVAREFGDKL-KGVRVDTSKNMIDKYFIRHPEVL-----GTFDPRGV---NPELIKALRKALDENGGKHVKII  284 (352)
T ss_pred             ccHHHHHHHHHHhCCCc-cEEEeCCcchHhhhhcccccccc-----cccccccc---cHHHHHHHHHHHhhCCCCCcEEE
Confidence            35666777777766655 12333444333444432222211     01111113   3445677788787777 778999


Q ss_pred             EeCCCCcccHHHHHHcC--CCEEEEcccccCC
Q 029661          140 VDGGVGPKNAYKVIEAG--ANALVAGSAVFGA  169 (190)
Q Consensus       140 vdGGI~~e~~~~~~~aG--ad~~VvGsaI~~~  169 (190)
                      +.||||++++.++.++|  +|++=|||+|...
T Consensus       285 aSgGine~~I~~~~~~g~piD~~GVGt~l~~~  316 (352)
T PRK07188        285 VSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI  316 (352)
T ss_pred             EeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence            99999999999999999  7999999999875

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=97.37  E-value=0.017  Score=51.38  Aligned_cols=145  Identities=17%  Similarity=0.160  Sum_probs=91.4

Q ss_pred             CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh---CCcEEEEEcCCCCH
Q 029661           11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSL   87 (190)
Q Consensus        11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~---g~~~g~~i~p~t~~   87 (190)
                      ..++..++|.+......+.=+.-.+|+...+.+.+++.|.+-+|..-    ++ +.++.+++.   ++++.=++...+..
T Consensus       293 V~~~~a~~i~~~l~v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e----~~-~~~~~l~~~~~~~~~iikai~v~~~~  367 (454)
T PRK09427        293 VSLEQAQEIIAAAPLRYVGVFRNADIEDIVDIAKQLSLAAVQLHGDE----DQ-AYIDALREALPKTCQIWKAISVGDTL  367 (454)
T ss_pred             CCHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCCC----CH-HHHHHHHhhcCCCCeEEEEeecCchh
Confidence            35667777766422333332223466777778889999999999852    23 345566653   35666566664433


Q ss_pred             HHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccccc
Q 029661           88 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus        88 ~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~  167 (190)
                      . ..++ ..+|++++=+ .+|.+|+.|.-..+   .   ...     ..++...||+|++|+.+++..++.++=+-|.+=
T Consensus       368 ~-~~~~-~~~d~~LlDs-~~GGtG~~~DW~~l---~---~~~-----~~p~iLAGGL~peNV~~ai~~~P~gVDVsSGVE  433 (454)
T PRK09427        368 P-ARDL-QHVDRYLLDN-GQGGTGQTFDWSLL---P---GQS-----LDNVLLAGGLNPDNCQQAAQLGCAGLDFNSGVE  433 (454)
T ss_pred             h-hhhh-cCCCEEEEcC-CCCCCCCccChHHh---h---hcc-----cCCEEEECCCCHHHHHHHHhcCCCEEEeCCccc
Confidence            2 2222 2378887654 45667888764322   1   111     246789999999999999888999888877775


Q ss_pred             CC---CCHHH
Q 029661          168 GA---KDYAE  174 (190)
Q Consensus       168 ~~---~dp~~  174 (190)
                      .+   .|+..
T Consensus       434 ~~pG~KD~~K  443 (454)
T PRK09427        434 SAPGIKDAQK  443 (454)
T ss_pred             CCCCCcCHHH
Confidence            33   46653

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=97.36  E-value=0.007  Score=55.47  Aligned_cols=140  Identities=16%  Similarity=0.212  Sum_probs=92.2

Q ss_pred             HHHHHhccC-CCCcEEEEEeecCh-----------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVEP-----------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL   81 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~dp-----------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i   81 (190)
                      +.++.+|+. ++.++-+.+-..|.           ..+++.+.++|.|.+.+-.......++...++.+|++|+.+...+
T Consensus        64 e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i  143 (592)
T PRK09282         64 ERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTI  143 (592)
T ss_pred             HHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEE
Confidence            445666665 67777765544332           346888999999988876443224568888999999999887655


Q ss_pred             ----cCCCCHHHHHHhhc-----ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCccc
Q 029661           82 ----NPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKN  148 (190)
Q Consensus        82 ----~p~t~~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~  148 (190)
                          +|.++.+.+.+++.     .+|.|.+    ....|...+..+.+.++.+|+..+     .+|.+    +.|....|
T Consensus       144 ~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i----~Dt~G~~~P~~~~~lv~~lk~~~~-----~pi~~H~Hnt~Gla~An  214 (592)
T PRK09282        144 SYTTSPVHTIEKYVELAKELEEMGCDSICI----KDMAGLLTPYAAYELVKALKEEVD-----LPVQLHSHCTSGLAPMT  214 (592)
T ss_pred             EeccCCCCCHHHHHHHHHHHHHcCCCEEEE----CCcCCCcCHHHHHHHHHHHHHhCC-----CeEEEEEcCCCCcHHHH
Confidence                34344444444332     2676654    334455555666677777776542     45665    88888888


Q ss_pred             HHHHHHcCCCEEEE
Q 029661          149 AYKVIEAGANALVA  162 (190)
Q Consensus       149 ~~~~~~aGad~~Vv  162 (190)
                      .-..+++|||.+=.
T Consensus       215 ~laAv~aGad~vD~  228 (592)
T PRK09282        215 YLKAVEAGVDIIDT  228 (592)
T ss_pred             HHHHHHhCCCEEEe
Confidence            88889999997643

>TIGR00419 tim triosephosphate isomerase

Probab=97.36  E-value=0.0034  Score=49.94  Aligned_cols=124  Identities=18%  Similarity=0.274  Sum_probs=76.7

Q ss_pred             HHHHHHcCCCEEEE-cccCC-CcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEEEeeec----CCCCcc
Q 029661           40 VPDFIKAGADIVSV-HCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP----GFGGQS  113 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~~-~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~p----G~~gq~  113 (190)
                      .+++.++|++++++ |.|-- ...++.+-++.+.++|+.+.+.+.  ...+.+..  ....- +++..+|    |+ |+.
T Consensus        74 ~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi~--~v~~q~~~--~~~~~-~vIAYEPvWAIGt-G~~  147 (205)
T TIGR00419        74 AEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCTN--NVLTTAAA--AALEP-DVVAVEPPELIGT-GIP  147 (205)
T ss_pred             HHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEEH--HHHHHHHh--hhhcC-eEEEECCHHHhCC-CCC
Confidence            67899999999999 54420 012377788889999999999882  11111111  11111 2334566    53 544


Q ss_pred             cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHH-HHcCCCEEEEcccccCC
Q 029661          114 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFGA  169 (190)
Q Consensus       114 ~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~~~  169 (190)
                      -.++-.+.+.+.-+...+...+++|..+|+++++|..++ .+.++|++-+||+..++
T Consensus       148 as~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~a  204 (205)
T TIGR00419       148 VSPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLKA  204 (205)
T ss_pred             CCHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeecC
Confidence            333333333322222222234578999999999988865 67789999999987654

Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.

>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism

Probab=97.36  E-value=0.0064  Score=49.08  Aligned_cols=160  Identities=18%  Similarity=0.285  Sum_probs=106.0

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------------CcchHHHHHHHHHHhCCcEEEE
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------------~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      +-+..|++....++..-  .+--.++++.+.+...+.+|+-+|.-             ..+.+..+++.+++.|+++.++
T Consensus        52 ~Dv~~L~~~~~~~lNlE--~a~t~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLF  129 (234)
T cd00003          52 RDVRLLRELVRTELNLE--MAPTEEMLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLF  129 (234)
T ss_pred             HHHHHHHHHcCCCEEec--cCCCHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEE
Confidence            34566666544455443  22235688999999999999976641             1134788999999999999999


Q ss_pred             EcCCCC-HHHHHHhhcccceEEEEeeecCCCCccc----chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHH-
Q 029661           81 LNPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSF----IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-  154 (190)
Q Consensus        81 i~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~----~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~-  154 (190)
                      +.|+.. ++...++  .+|.|-+.   .|.....+    ...-++++...-++..+.  .+.+.++-|+|.+|++.+.+ 
T Consensus       130 iDPd~~qi~~A~~~--GAd~VELh---TG~Ya~a~~~~~~~~el~~i~~aa~~a~~~--GL~VnAGHgLny~Nv~~i~~i  202 (234)
T cd00003         130 IDPDPEQIEAAKEV--GADRVELH---TGPYANAYDKAEREAELERIAKAAKLAREL--GLGVNAGHGLNYENVKPIAKI  202 (234)
T ss_pred             eCCCHHHHHHHHHh--CcCEEEEe---chhhhcCCCchhHHHHHHHHHHHHHHHHHc--CCEEecCCCCCHHHHHHHHhC
Confidence            998633 3333332  58998763   34332222    233466676666665554  46788999999999998854 


Q ss_pred             cCCCEEEEcccccCC---CCHHHHHHHHHHh
Q 029661          155 AGANALVAGSAVFGA---KDYAEAIKGIKTS  182 (190)
Q Consensus       155 aGad~~VvGsaI~~~---~dp~~~~~~l~~~  182 (190)
                      -+..=+-+|-+|+..   --..++++++++.
T Consensus       203 p~i~ElnIGHsiia~Al~~Gl~~AV~~m~~~  233 (234)
T cd00003         203 PGIAELNIGHAIISRALFVGLEEAVREMKDL  233 (234)
T ss_pred             CCCeEEccCHHHHHHHHHHhHHHHHHHHHHh
Confidence            346667788777653   2456677777654

In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=97.35  E-value=0.002  Score=51.20  Aligned_cols=149  Identities=17%  Similarity=0.147  Sum_probs=91.9

Q ss_pred             CHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661           12 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI   90 (190)
Q Consensus        12 G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~   90 (190)
                      ..+.|+.+++. ++..+-+=. |-||.. ++++.++|++.+.-+...      .++++.++++|+-+.--+.  ||-|.+
T Consensus        51 a~e~I~~l~~~~p~~lIGAGT-VL~~~q-~~~a~~aGa~fiVsP~~~------~ev~~~a~~~~ip~~PG~~--TptEi~  120 (211)
T COG0800          51 ALEAIRALAKEFPEALIGAGT-VLNPEQ-ARQAIAAGAQFIVSPGLN------PEVAKAANRYGIPYIPGVA--TPTEIM  120 (211)
T ss_pred             HHHHHHHHHHhCcccEEcccc-ccCHHH-HHHHHHcCCCEEECCCCC------HHHHHHHHhCCCcccCCCC--CHHHHH
Confidence            45677788764 444444433 235654 567899999988876542      3578889988877544333  454444


Q ss_pred             HHhhcccceEEEEeeecCC--CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccC
Q 029661           91 ECVLDVVDLVLIMSVNPGF--GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus        91 ~~~~~~~d~i~~m~v~pG~--~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      .-+-...+.+=+   .|+-  +|    +..   ++.+....    .++++...|||++.|++++..+|+..+=+||.++.
T Consensus       121 ~Ale~G~~~lK~---FPa~~~Gg----~~~---~ka~~gP~----~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~  186 (211)
T COG0800         121 AALELGASALKF---FPAEVVGG----PAM---LKALAGPF----PQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVP  186 (211)
T ss_pred             HHHHcChhheee---cCccccCc----HHH---HHHHcCCC----CCCeEeecCCCCHHHHHHHHhCCceEEecCccccC
Confidence            333223444433   3432  22    112   22223222    34789999999999999999999776666899985


Q ss_pred             C-----CCHHHHHHHHHHhhc
Q 029661          169 A-----KDYAEAIKGIKTSKR  184 (190)
Q Consensus       169 ~-----~dp~~~~~~l~~~~~  184 (190)
                      .     +|+.+..+..++.++
T Consensus       187 ~~~~~~~~~~~i~~~a~~~~~  207 (211)
T COG0800         187 KDLIAAGDWDRITELAREAVA  207 (211)
T ss_pred             hhhhhcccHHHHHHHHHHHHH
Confidence            3     566666555555443

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=97.35  E-value=0.0018  Score=55.64  Aligned_cols=129  Identities=18%  Similarity=0.196  Sum_probs=78.4

Q ss_pred             HHHHcCCCEEEEcccCC--------------------Ccc----hHHHHHHHHHHh-C------CcEEEEEcCCCC----
Q 029661           42 DFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-G------AKAGVVLNPATS----   86 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e~~--------------------~~~----~~~~~i~~i~~~-g------~~~g~~i~p~t~----   86 (190)
                      .+.++|+|+|-+|.-.+                    +.+    -+.++++.+|+. |      ..+++=+++...    
T Consensus       152 ~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g  231 (353)
T cd04735         152 RAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPG  231 (353)
T ss_pred             HHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCC
Confidence            45778999999996210                    001    145788888874 3      456777776431    


Q ss_pred             --HHHHH---Hhhc--ccceEEEEeeecCC-CCcc--cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHc
Q 029661           87 --LSAIE---CVLD--VVDLVLIMSVNPGF-GGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA  155 (190)
Q Consensus        87 --~~~~~---~~~~--~~d~i~~m~v~pG~-~gq~--~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~a  155 (190)
                        .+...   +.++  .+|+|-+-   .|. ....  ..+.....++.+++...   .+.++.+-|||+ ++.+.++++.
T Consensus       232 ~~~ee~~~i~~~L~~~GvD~I~Vs---~g~~~~~~~~~~~~~~~~~~~ik~~~~---~~iPVi~~Ggi~t~e~ae~~l~~  305 (353)
T cd04735         232 IRMEDTLALVDKLADKGLDYLHIS---LWDFDRKSRRGRDDNQTIMELVKERIA---GRLPLIAVGSINTPDDALEALET  305 (353)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEec---cCccccccccCCcchHHHHHHHHHHhC---CCCCEEEECCCCCHHHHHHHHHc
Confidence              23222   2232  27888653   221 1111  11112333444555432   246788999995 8999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHH
Q 029661          156 GANALVAGSAVFGAKDYAEAI  176 (190)
Q Consensus       156 Gad~~VvGsaI~~~~dp~~~~  176 (190)
                      |+|.+.+||++...+|.-..+
T Consensus       306 gaD~V~~gR~liadPdl~~k~  326 (353)
T cd04735         306 GADLVAIGRGLLVDPDWVEKI  326 (353)
T ss_pred             CCChHHHhHHHHhCccHHHHH
Confidence            999999999998877765433

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=97.34  E-value=0.0012  Score=57.33  Aligned_cols=63  Identities=14%  Similarity=0.265  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEccccc-C-----CCCHHHHHHHHHHhh
Q 029661          118 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF-G-----AKDYAEAIKGIKTSK  183 (190)
Q Consensus       118 ~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~-~-----~~dp~~~~~~l~~~~  183 (190)
                      +++-|.++++...+   +++|.+||||+ ..++.+....|||.+-+|+.+. .     .+-....++.+++.+
T Consensus       294 t~~~L~ei~~~~~~---~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~~El  363 (383)
T cd03332         294 ALDALPEIVEAVGD---RLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAEL  363 (383)
T ss_pred             HHHHHHHHHHHhcC---CCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            45566666665542   47899999999 5788888999999999999755 2     123344555555544

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.34  E-value=0.00094  Score=54.17  Aligned_cols=78  Identities=15%  Similarity=0.256  Sum_probs=52.7

Q ss_pred             CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661           85 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA  162 (190)
Q Consensus        85 t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv  162 (190)
                      .|.+.++.+.+. +|.+.+..+.....++   +..++.++++++..     +.++.++|||+ .+.+..+.+.|+|.+++
T Consensus        28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~---~~~~~~i~~i~~~~-----~~pv~~~GGI~s~~d~~~~l~~G~~~v~i   99 (243)
T cd04731          28 DPVELAKRYNEQGADELVFLDITASSEGR---ETMLDVVERVAEEV-----FIPLTVGGGIRSLEDARRLLRAGADKVSI   99 (243)
T ss_pred             CHHHHHHHHHHCCCCEEEEEcCCcccccC---cccHHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence            444544444333 6766665555322222   22355566666543     36899999999 69999999999999999


Q ss_pred             cccccCCC
Q 029661          163 GSAVFGAK  170 (190)
Q Consensus       163 GsaI~~~~  170 (190)
                      ||++++.+
T Consensus       100 g~~~~~~p  107 (243)
T cd04731         100 NSAAVENP  107 (243)
T ss_pred             CchhhhCh
Confidence            99999854

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=97.33  E-value=0.00079  Score=54.21  Aligned_cols=79  Identities=19%  Similarity=0.322  Sum_probs=53.8

Q ss_pred             CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661           84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV  161 (190)
Q Consensus        84 ~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V  161 (190)
                      .+|.+.++.+-+. ++.+++.-+.-...++...   ++-++++++..     +.++.++||++ .+.+..+.+.|+|.++
T Consensus        30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n---~~~~~~i~~~~-----~~pv~~~ggi~~~~d~~~~~~~G~~~vi  101 (232)
T TIGR03572        30 GDPVNAARIYNAKGADELIVLDIDASKRGREPL---FELISNLAEEC-----FMPLTVGGGIRSLEDAKKLLSLGADKVS  101 (232)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCC---HHHHHHHHHhC-----CCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence            3566666666443 6777776665322232222   33344444433     36799999999 6899999999999999


Q ss_pred             EcccccCCC
Q 029661          162 AGSAVFGAK  170 (190)
Q Consensus       162 vGsaI~~~~  170 (190)
                      +||++++.+
T Consensus       102 lg~~~l~~~  110 (232)
T TIGR03572       102 INTAALENP  110 (232)
T ss_pred             EChhHhcCH
Confidence            999998754

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=97.32  E-value=0.0012  Score=53.89  Aligned_cols=48  Identities=13%  Similarity=0.160  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCC
Q 029661          119 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD  171 (190)
Q Consensus       119 ~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~d  171 (190)
                      .+-|+++.+.+     ..+++++|||+ .+.+..+.++|||-+|+||..++.++
T Consensus        63 ~~~i~~i~~~~-----~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~  111 (243)
T TIGR01919        63 EMMLEEVVKLL-----VVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPW  111 (243)
T ss_pred             HHHHHHHHHHC-----CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHH
Confidence            33455555443     36899999999 79999999999999999999887543

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=97.31  E-value=0.008  Score=51.24  Aligned_cols=125  Identities=22%  Similarity=0.235  Sum_probs=77.8

Q ss_pred             HHHHcCCCEEEEcccCC--------------------Cc----chHHHHHHHHHHh-C--CcEEEEEcCC------CCHH
Q 029661           42 DFIKAGADIVSVHCEQS--------------------ST----IHLHRTLNQIKDL-G--AKAGVVLNPA------TSLS   88 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e~~--------------------~~----~~~~~~i~~i~~~-g--~~~g~~i~p~------t~~~   88 (190)
                      .+.++|.|+|-+|.-.+                    +.    .-+.++++++|+. |  +.+++-+++.      .+.+
T Consensus       157 ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~e  236 (338)
T cd04733         157 LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEE  236 (338)
T ss_pred             HHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHH
Confidence            46788999999985420                    10    1145788888874 3  6688888742      2333


Q ss_pred             HHHHh---hcc--cceEEEEeeecCCCCcccc-----------h-hhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHH
Q 029661           89 AIECV---LDV--VDLVLIMSVNPGFGGQSFI-----------E-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY  150 (190)
Q Consensus        89 ~~~~~---~~~--~d~i~~m~v~pG~~gq~~~-----------~-~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~  150 (190)
                      ...++   ++.  +|+|-+   +.|...+...           + ..++..+++|+..     ++++.++|+|+ ++.+.
T Consensus       237 ea~~ia~~Le~~Gvd~iev---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-----~iPVi~~G~i~t~~~a~  308 (338)
T cd04733         237 DALEVVEALEEAGVDLVEL---SGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-----KTPLMVTGGFRTRAAME  308 (338)
T ss_pred             HHHHHHHHHHHcCCCEEEe---cCCCCCCccccccccCCccccchhhHHHHHHHHHHc-----CCCEEEeCCCCCHHHHH
Confidence            32222   222  677754   3332222110           0 1134445555543     47899999996 88999


Q ss_pred             HHHHcC-CCEEEEcccccCCCCHHH
Q 029661          151 KVIEAG-ANALVAGSAVFGAKDYAE  174 (190)
Q Consensus       151 ~~~~aG-ad~~VvGsaI~~~~dp~~  174 (190)
                      ++++.| +|.+-+|+++...++.-.
T Consensus       309 ~~l~~g~aD~V~lgR~~iadP~~~~  333 (338)
T cd04733         309 QALASGAVDGIGLARPLALEPDLPN  333 (338)
T ss_pred             HHHHcCCCCeeeeChHhhhCccHHH
Confidence            999887 999999999988776543

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=97.31  E-value=0.011  Score=51.79  Aligned_cols=148  Identities=21%  Similarity=0.298  Sum_probs=85.6

Q ss_pred             HHHHhccC-C-CCcEEEEEeec--Ch---HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE----------
Q 029661           15 VVDALRPV-T-DLPLDVHLMIV--EP---EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA----------   77 (190)
Q Consensus        15 ~v~~i~~~-~-~~~i~~hlmv~--dp---~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~----------   77 (190)
                      .|+++|+. + +.|+-+.|+..  +|   ..+++.+.+.|+..|....... . ++  .+...|..|++.          
T Consensus        56 ~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~-~-~p--~~~~~r~~G~~~~~~g~~~~~~  131 (418)
T cd04742          56 AIERIQAALGNGEPYGVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAFMQ-L-TP--ALVRYRAKGLRRDADGRVQIAN  131 (418)
T ss_pred             HHHHHHHhccCCCCeEEeeecCCCCchhHHHHHHHHHHcCCCEEEeccccC-C-Cc--chhhHHhcCCcccccccccccc
Confidence            34556663 6 88999999873  33   3468889999999988875321 1 12  223566766651          


Q ss_pred             --EEEEc-CC--------CCHHHHHHhhc----------------ccceEEEEeeecCC-CCcccchhhHHHHHHHHHHH
Q 029661           78 --GVVLN-PA--------TSLSAIECVLD----------------VVDLVLIMSVNPGF-GGQSFIESQVKKISDLRRMC  129 (190)
Q Consensus        78 --g~~i~-p~--------t~~~~~~~~~~----------------~~d~i~~m~v~pG~-~gq~~~~~~~~ki~~~~~~~  129 (190)
                        .-.++ |.        -|-+.++++.+                .+|.|.+- .+.|. .|+.-....+..+.++++..
T Consensus       132 ~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v  210 (418)
T cd04742         132 RIIAKVSRPEVAEAFMSPAPERILKKLLAEGKITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDEL  210 (418)
T ss_pred             eEEEecCChhhhhhhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHH
Confidence              11111 10        01112222221                15888765 45432 12211122344455554433


Q ss_pred             hh-cC--CCCeEEEeCCCC-cccHHHHHHcCCCEEEEccccc
Q 029661          130 LE-KG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus       130 ~~-~~--~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~  167 (190)
                      .. .+  .+++|.+.|||. ++.+..+...|||.+.+||...
T Consensus       211 ~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fl  252 (418)
T cd04742         211 AARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQ  252 (418)
T ss_pred             hhccccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHH
Confidence            21 11  247899999997 7899999999999999999754

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.30  E-value=0.013  Score=53.08  Aligned_cols=158  Identities=15%  Similarity=0.178  Sum_probs=96.1

Q ss_pred             HHHHHHhccCCCCcEEEEEeec---Ch-------HHHHHHHHHcCCCEEEEcccCCCcch------------HHHHHHHH
Q 029661           13 PLVVDALRPVTDLPLDVHLMIV---EP-------EQRVPDFIKAGADIVSVHCEQSSTIH------------LHRTLNQI   70 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~---dp-------~~~i~~~~~~Gad~v~vh~e~~~~~~------------~~~~i~~i   70 (190)
                      .++|+++.+...+|+-+===+.   ||       .+-++.++++|||-|++--.+  ..+            ++-+-+.+
T Consensus       303 ~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~A--v~~~~~~~~~~~~~~p~~i~~~~  380 (538)
T PLN02617        303 LEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDA--VYAAEEYIASGVKTGKTSIEQIS  380 (538)
T ss_pred             HHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHH--HhChhhhhccccccCHHHHHHHH
Confidence            4678888776666665521122   22       245788999999999997543  222            45556666


Q ss_pred             HHhCCc-EEEEEcCC-------------------------------------------CCHHHHHHhhcc-cceEEEEee
Q 029661           71 KDLGAK-AGVVLNPA-------------------------------------------TSLSAIECVLDV-VDLVLIMSV  105 (190)
Q Consensus        71 ~~~g~~-~g~~i~p~-------------------------------------------t~~~~~~~~~~~-~d~i~~m~v  105 (190)
                      +++|-+ +.+++.+.                                           .++++++++.+. +.-|++-++
T Consensus       381 ~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~i  460 (538)
T PLN02617        381 RVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCI  460 (538)
T ss_pred             HHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeec
Confidence            778877 55666532                                           123555555444 677777666


Q ss_pred             ecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH-cCCCEEEEcccc-cCCCCHHHHHHHHH
Q 029661          106 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE-AGANALVAGSAV-FGAKDYAEAIKGIK  180 (190)
Q Consensus       106 ~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~-aGad~~VvGsaI-~~~~dp~~~~~~l~  180 (190)
                      .--...+-+.   ++.++++++..     ++++.+.||++ ++++.++.+ .|||...++|.+ |..-++.+.-+.|+
T Consensus       461 d~DGt~~G~d---~~l~~~v~~~~-----~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~  530 (538)
T PLN02617        461 DCDGQGKGFD---IELVKLVSDAV-----TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLL  530 (538)
T ss_pred             cccccccCcC---HHHHHHHHhhC-----CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHH
Confidence            5422233333   34444444442     47888999998 799988876 679998877754 33344444444444

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=97.30  E-value=0.0025  Score=54.79  Aligned_cols=115  Identities=24%  Similarity=0.394  Sum_probs=74.7

Q ss_pred             CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEE--cccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHH
Q 029661           11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV--HCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS   88 (190)
Q Consensus        11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~v--h~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~   88 (190)
                      +..+.+++||+.++.|+.+.- +.+| +..+.+.++|+|+|++  |.-   . .+                         
T Consensus       208 ~~~~~l~~lr~~~~~PvivKg-v~~~-~dA~~a~~~G~d~I~vsnhGG---r-~l-------------------------  256 (351)
T cd04737         208 LSPADIEFIAKISGLPVIVKG-IQSP-EDADVAINAGADGIWVSNHGG---R-QL-------------------------  256 (351)
T ss_pred             CCHHHHHHHHHHhCCcEEEec-CCCH-HHHHHHHHcCCCEEEEeCCCC---c-cC-------------------------
Confidence            466888999988888888842 3344 3567788899999988  431   0 00                         


Q ss_pred             HHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEccccc
Q 029661           89 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus        89 ~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~  167 (190)
                               |           ++    +..++.+.++++...   .+++|.+||||+ ..++.+++..|||.+-+|++++
T Consensus       257 ---------d-----------~~----~~~~~~l~~i~~a~~---~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l  309 (351)
T cd04737         257 ---------D-----------GG----PASFDSLPEIAEAVN---HRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVL  309 (351)
T ss_pred             ---------C-----------CC----chHHHHHHHHHHHhC---CCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence                     0           01    122334444544432   247899999999 5788888899999999999865


Q ss_pred             CC------CCHHHHHHHHHHhh
Q 029661          168 GA------KDYAEAIKGIKTSK  183 (190)
Q Consensus       168 ~~------~dp~~~~~~l~~~~  183 (190)
                      .+      +.....++.+++.+
T Consensus       310 ~~la~~G~~gv~~~l~~l~~El  331 (351)
T cd04737         310 YGLALGGAQGVASVLEHLNKEL  331 (351)
T ss_pred             HHHhhchHHHHHHHHHHHHHHH
Confidence            32      23344555555544

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=97.29  E-value=0.013  Score=49.93  Aligned_cols=126  Identities=16%  Similarity=0.255  Sum_probs=79.1

Q ss_pred             HHHHHHH--cCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCC--CCc
Q 029661           39 RVPDFIK--AGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQ  112 (190)
Q Consensus        39 ~i~~~~~--~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~--~gq  112 (190)
                      .++.+.+  +|+|.+++-.-.+..+..-+.++.+|+.-- ...++=|..|+- -.+.++. .+|.|-+ ++=||.  .-+
T Consensus       112 r~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e-~a~~Li~aGAD~vKV-GIGpGSiCtTr  189 (346)
T PRK05096        112 KTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGE-MVEELILSGADIVKV-GIGPGSVCTTR  189 (346)
T ss_pred             HHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHH-HHHHHHHcCCCEEEE-cccCCccccCc
Confidence            4667777  599999984433223456678888888532 334455555664 4455544 4887643 444442  111


Q ss_pred             c---c-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          113 S---F-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       113 ~---~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .   + .| .+.-+.+..+...+  ++.+|..||||+ ..++.+.+.+|||.+-+||.+-..
T Consensus       190 ~vtGvG~P-QltAV~~~a~~a~~--~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt  248 (346)
T PRK05096        190 VKTGVGYP-QLSAVIECADAAHG--LGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGH  248 (346)
T ss_pred             cccccChh-HHHHHHHHHHHHHH--cCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCc
Confidence            0   1 12 23334444444333  456899999999 789999999999999999988654

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=97.28  E-value=0.0055  Score=52.87  Aligned_cols=122  Identities=19%  Similarity=0.324  Sum_probs=72.3

Q ss_pred             HHcCCCEEEEc--ccCCCcchHHHHHHHHHHhC--CcEEEEEcCCCCHHHHHHhh--cccceEEEEeeecCCCCccc--c
Q 029661           44 IKAGADIVSVH--CEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVL--DVVDLVLIMSVNPGFGGQSF--I  115 (190)
Q Consensus        44 ~~~Gad~v~vh--~e~~~~~~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~~--~~~d~i~~m~v~pG~~gq~~--~  115 (190)
                      ...|.|.++-.  .+..+.+++.+.++.+|+.+  +.+++=+......+.+....  ..+|+|.+=+-+-|++..+.  .
T Consensus       169 ~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~  248 (368)
T PF01645_consen  169 VPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSM  248 (368)
T ss_dssp             S-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHH
T ss_pred             CCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHH
Confidence            44577777753  22224567888889999864  88888777777877666533  24899988666655443221  1


Q ss_pred             h----hhHHHHHHHHHHHhhcC--CCCeEEEeCCCC-cccHHHHHHcCCCEEEEccc
Q 029661          116 E----SQVKKISDLRRMCLEKG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA  165 (190)
Q Consensus       116 ~----~~~~ki~~~~~~~~~~~--~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsa  165 (190)
                      .    -+..-+.++.+.+.+++  ..+.+.++||+. +.++...+..|||.+-+|++
T Consensus       249 d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~  305 (368)
T PF01645_consen  249 DHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTA  305 (368)
T ss_dssp             HHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHH
T ss_pred             hhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecch
Confidence            1    11233666777766554  357899999999 68999999999999999986

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.25  E-value=0.0016  Score=52.73  Aligned_cols=88  Identities=17%  Similarity=0.304  Sum_probs=58.4

Q ss_pred             CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661           83 PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        83 p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      ...|++..+.|.+. +|.+.+.-... ..|..   ..++-|+++.+..     ..+++++|||+ .|++..+..+||+-+
T Consensus        34 ~~dp~~~a~~~~~~g~~~l~i~DLd~-~~~~~---~n~~~i~~i~~~~-----~~~v~vgGGir~~edv~~~l~~Ga~~v  104 (233)
T cd04723          34 TSDPLDVARAYKELGFRGLYIADLDA-IMGRG---DNDEAIRELAAAW-----PLGLWVDGGIRSLENAQEWLKRGASRV  104 (233)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEeCcc-ccCCC---ccHHHHHHHHHhC-----CCCEEEecCcCCHHHHHHHHHcCCCeE
Confidence            34677777777654 78777765552 22322   2344455554432     36899999999 599999999999999


Q ss_pred             EEcccccCCCCHHHHHHHH
Q 029661          161 VAGSAVFGAKDYAEAIKGI  179 (190)
Q Consensus       161 VvGsaI~~~~dp~~~~~~l  179 (190)
                      |+||.-++.+-..+.++++
T Consensus       105 iigt~~~~~~~~~~~~~~~  123 (233)
T cd04723         105 IVGTETLPSDDDEDRLAAL  123 (233)
T ss_pred             EEcceeccchHHHHHHHhc
Confidence            9999888752223444444

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=97.25  E-value=0.0074  Score=55.20  Aligned_cols=144  Identities=20%  Similarity=0.236  Sum_probs=93.5

Q ss_pred             HHHHHHhcc-CCCCcEEEEEeecC-------h----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661           13 PLVVDALRP-VTDLPLDVHLMIVE-------P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        13 ~~~v~~i~~-~~~~~i~~hlmv~d-------p----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      .+.++.+++ .++.++-+.+-..|       |    ..+++.+.++|+|.+.+.......+++...++.+|++|+.+...
T Consensus        58 ~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~  137 (582)
T TIGR01108        58 WERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGT  137 (582)
T ss_pred             HHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEE
Confidence            356788877 46777776554333       2    34688899999999887644322467888999999999998766


Q ss_pred             Ec----CCCCHHHHHHhhc-----ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHH
Q 029661           81 LN----PATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYK  151 (190)
Q Consensus        81 i~----p~t~~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~  151 (190)
                      ++    |-++.+.+.+++.     .+|.|.+    ....|-..+..+.+.++.+|+..+ ...++..-=+.|...-|.-.
T Consensus       138 i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i----~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~la  212 (582)
T TIGR01108       138 ISYTTSPVHTLETYLDLAEELLEMGVDSICI----KDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLK  212 (582)
T ss_pred             EEeccCCCCCHHHHHHHHHHHHHcCCCEEEE----CCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHH
Confidence            44    3344554444432     2676644    344555556667777888877653 11112223567777778888


Q ss_pred             HHHcCCCEEE
Q 029661          152 VIEAGANALV  161 (190)
Q Consensus       152 ~~~aGad~~V  161 (190)
                      .+++|||.+=
T Consensus       213 AveaGa~~vd  222 (582)
T TIGR01108       213 AIEAGADGID  222 (582)
T ss_pred             HHHhCCCEEE
Confidence            8999999763

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=97.24  E-value=0.0054  Score=52.40  Aligned_cols=127  Identities=16%  Similarity=0.214  Sum_probs=79.1

Q ss_pred             HHHHcCCCEEEEcccCC--------------------Cc----chHHHHHHHHHHh-CCcEEEEEcCCC------CHHHH
Q 029661           42 DFIKAGADIVSVHCEQS--------------------ST----IHLHRTLNQIKDL-GAKAGVVLNPAT------SLSAI   90 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e~~--------------------~~----~~~~~~i~~i~~~-g~~~g~~i~p~t------~~~~~   90 (190)
                      .+.++|+|+|-+|.-.+                    +.    .-+.++++.+|+. +..+++=+++..      +.+..
T Consensus       150 ~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~  229 (337)
T PRK13523        150 RAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDY  229 (337)
T ss_pred             HHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHH
Confidence            45778999999996520                    11    1145788888885 566777777631      33333


Q ss_pred             HHh---hc--ccceEEEEeeecCCC----CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-CCE
Q 029661           91 ECV---LD--VVDLVLIMSVNPGFG----GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANA  159 (190)
Q Consensus        91 ~~~---~~--~~d~i~~m~v~pG~~----gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-ad~  159 (190)
                      .++   ++  .+|+|-+   ..|..    .+.+....++-.+++|+..     +.++.+.|+|+ ++.+.++++.| +|.
T Consensus       230 ~~i~~~l~~~gvD~i~v---s~g~~~~~~~~~~~~~~~~~~~~ik~~~-----~ipVi~~G~i~~~~~a~~~l~~g~~D~  301 (337)
T PRK13523        230 VQYAKWMKEQGVDLIDV---SSGAVVPARIDVYPGYQVPFAEHIREHA-----NIATGAVGLITSGAQAEEILQNNRADL  301 (337)
T ss_pred             HHHHHHHHHcCCCEEEe---CCCCCCCCCCCCCccccHHHHHHHHhhc-----CCcEEEeCCCCCHHHHHHHHHcCCCCh
Confidence            332   32  2688865   33321    1111111233445555543     46888999996 89999999987 999


Q ss_pred             EEEcccccCCCCHHHHH
Q 029661          160 LVAGSAVFGAKDYAEAI  176 (190)
Q Consensus       160 ~VvGsaI~~~~dp~~~~  176 (190)
                      +-+||++...++.-..+
T Consensus       302 V~~gR~~iadP~~~~k~  318 (337)
T PRK13523        302 IFIGRELLRNPYFPRIA  318 (337)
T ss_pred             HHhhHHHHhCccHHHHH
Confidence            99999998877664333

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.22  E-value=0.0013  Score=54.14  Aligned_cols=79  Identities=16%  Similarity=0.307  Sum_probs=55.0

Q ss_pred             CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661           84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV  161 (190)
Q Consensus        84 ~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V  161 (190)
                      ..|++.++.|.+. ++.+++.-+.....++.   .-++-++++.+..     ..++.++|||+ .+.+.++.++|++.++
T Consensus        30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~---~n~~~i~~i~~~~-----~~pv~~gGGi~s~~d~~~l~~~G~~~vv  101 (258)
T PRK01033         30 GDPINAVRIFNEKEVDELIVLDIDASKRGSE---PNYELIENLASEC-----FMPLCYGGGIKTLEQAKKIFSLGVEKVS  101 (258)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEECCCCcCCCc---ccHHHHHHHHHhC-----CCCEEECCCCCCHHHHHHHHHCCCCEEE
Confidence            3567777776654 78887766653222322   2244455555432     36899999997 7999999999999999


Q ss_pred             EcccccCCC
Q 029661          162 AGSAVFGAK  170 (190)
Q Consensus       162 vGsaI~~~~  170 (190)
                      +||+++..+
T Consensus       102 igs~~~~~~  110 (258)
T PRK01033        102 INTAALEDP  110 (258)
T ss_pred             EChHHhcCH
Confidence            999988754

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=97.21  E-value=0.0073  Score=51.54  Aligned_cols=146  Identities=15%  Similarity=0.147  Sum_probs=86.9

Q ss_pred             CCCcEEEEEeecC------h-H----HHHHHHHHcCCCEEEEcccCCC------cchHHHHHHHHHHhCCcEEEEEcCCC
Q 029661           23 TDLPLDVHLMIVE------P-E----QRVPDFIKAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLNPAT   85 (190)
Q Consensus        23 ~~~~i~~hlmv~d------p-~----~~i~~~~~~Gad~v~vh~e~~~------~~~~~~~i~~i~~~g~~~g~~i~p~t   85 (190)
                      .++++.+||=-..      + .    .-++.+...|||.|.+|.--++      .+++.++.++++++|+-+.+...|.-
T Consensus       124 ~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG  203 (348)
T PRK09250        124 HKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRN  203 (348)
T ss_pred             CCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccC
Confidence            3578888764421      1 1    1378899999999999865432      23467778889999999887655433


Q ss_pred             C-----------HHHHHHhhc-----ccceEEEEeeecCCCCcccc-----------------hhhHHHHHHHHHHHhhc
Q 029661           86 S-----------LSAIECVLD-----VVDLVLIMSVNPGFGGQSFI-----------------ESQVKKISDLRRMCLEK  132 (190)
Q Consensus        86 ~-----------~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~-----------------~~~~~ki~~~~~~~~~~  132 (190)
                      +           .+.+.....     .+|.|=+  -.||.. ..|.                 ....++++.+-.-+- .
T Consensus       204 ~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv--~yp~~~-~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~-a  279 (348)
T PRK09250        204 SAFKKDGDYHTAADLTGQANHLAATIGADIIKQ--KLPTNN-GGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCY-M  279 (348)
T ss_pred             cccCCcccccccHHHHHHHHHHHHHHcCCEEEe--cCCCCh-hhHHHhhcccccccccccccccchHHHHHHHHHhhc-c
Confidence            2           222222111     1577642  224311 1111                 112233333332210 0


Q ss_pred             CCCCeEEEeCCCCc------ccHHHH---HHcCCCEEEEcccccCCCCHH
Q 029661          133 GVNPWIEVDGGVGP------KNAYKV---IEAGANALVAGSAVFGAKDYA  173 (190)
Q Consensus       133 ~~~~~i~vdGGI~~------e~~~~~---~~aGad~~VvGsaI~~~~dp~  173 (190)
                       -..++.+.||=+.      +.+..+   +++||.++++||.||+.++++
T Consensus       280 -g~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~~e  328 (348)
T PRK09250        280 -GRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPMAE  328 (348)
T ss_pred             -CCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCcHH
Confidence             0357888999873      245567   788999999999999998875

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=97.19  E-value=0.011  Score=48.64  Aligned_cols=140  Identities=18%  Similarity=0.215  Sum_probs=86.4

Q ss_pred             CHHHHHHhccC-CCCcEEEEEe--ecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE--cCCCC
Q 029661           12 GPLVVDALRPV-TDLPLDVHLM--IVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATS   86 (190)
Q Consensus        12 G~~~v~~i~~~-~~~~i~~hlm--v~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i--~p~t~   86 (190)
                      ..+.++.+++. .+..+.+-+-  ..+ .+.++.+.++|+|.+.+-..........+.++.+|+.|.++.+.+  ...++
T Consensus        61 ~~e~i~~~~~~~~~~~~~~~~~~~~~~-~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~  139 (263)
T cd07943          61 DEEYLEAAAEALKQAKLGVLLLPGIGT-VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMAS  139 (263)
T ss_pred             hHHHHHHHHHhccCCEEEEEecCCccC-HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCC
Confidence            44677888653 4555544210  223 345788999999998764332113457789999999999987766  33344


Q ss_pred             HHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC----CCCcccHHHHHHcCC
Q 029661           87 LSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG----GVGPKNAYKVIEAGA  157 (190)
Q Consensus        87 ~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG----GI~~e~~~~~~~aGa  157 (190)
                      .+.+.++.+.     +|.|.+    +-+.|...+..+.+.++.+|+..+.    .++.+=+    |....|.-..+++||
T Consensus       140 ~~~~~~~~~~~~~~G~d~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~----~~l~~H~Hn~~GlA~AN~laAi~aGa  211 (263)
T cd07943         140 PEELAEQAKLMESYGADCVYV----TDSAGAMLPDDVRERVRALREALDP----TPVGFHGHNNLGLAVANSLAAVEAGA  211 (263)
T ss_pred             HHHHHHHHHHHHHcCCCEEEE----cCCCCCcCHHHHHHHHHHHHHhCCC----ceEEEEecCCcchHHHHHHHHHHhCC
Confidence            5555444432     676654    4455655566666667777765431    2455443    444457778889999


Q ss_pred             CEE
Q 029661          158 NAL  160 (190)
Q Consensus       158 d~~  160 (190)
                      +.+
T Consensus       212 ~~v  214 (263)
T cd07943         212 TRI  214 (263)
T ss_pred             CEE
Confidence            965

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=97.19  E-value=0.0017  Score=52.29  Aligned_cols=94  Identities=15%  Similarity=0.213  Sum_probs=66.2

Q ss_pred             CCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661           83 PATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        83 p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      ...|++..+.|-+ .+|-+.++-+.....|+.   .+++-+++..+.+     .+|+.|.|||+ .++++++..+|||-+
T Consensus        29 ~GDpVelA~~Y~e~GADElvFlDItAs~~gr~---~~~~vv~r~A~~v-----fiPltVGGGI~s~eD~~~ll~aGADKV  100 (256)
T COG0107          29 AGDPVELAKRYNEEGADELVFLDITASSEGRE---TMLDVVERVAEQV-----FIPLTVGGGIRSVEDARKLLRAGADKV  100 (256)
T ss_pred             cCChHHHHHHHHHcCCCeEEEEecccccccch---hHHHHHHHHHhhc-----eeeeEecCCcCCHHHHHHHHHcCCCee
Confidence            3578888887765 489999888876666644   3455555554443     37899999999 799999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHHhhcccc
Q 029661          161 VAGSAVFGAKDYAEAIKGIKTSKRPQA  187 (190)
Q Consensus       161 VvGsaI~~~~dp~~~~~~l~~~~~~~~  187 (190)
                      -+.|+-...++   .++++-+....|.
T Consensus       101 SINsaAv~~p~---lI~~~a~~FGsQc  124 (256)
T COG0107         101 SINSAAVKDPE---LITEAADRFGSQC  124 (256)
T ss_pred             eeChhHhcChH---HHHHHHHHhCCce
Confidence            99987555332   4444444444443

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=97.17  E-value=0.015  Score=47.02  Aligned_cols=141  Identities=15%  Similarity=0.275  Sum_probs=90.4

Q ss_pred             HHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC--------cchHHHHHHHHHHhCCcEEE--EEcCCC-
Q 029661           17 DALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS--------TIHLHRTLNQIKDLGAKAGV--VLNPAT-   85 (190)
Q Consensus        17 ~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~--------~~~~~~~i~~i~~~g~~~g~--~i~p~t-   85 (190)
                      +++++--.+|+-+-+.=+|+..-+..+...||+.|-+-.-++.        .....++++.-+..+.++-+  .+.+.+ 
T Consensus        78 ~~v~r~v~iPvGvNVLrNd~vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa  157 (263)
T COG0434          78 REVVREVSIPVGVNVLRNDAVAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHA  157 (263)
T ss_pred             HHHHHhccccceeeeeccccHHHHHHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcc
Confidence            3444445789999888889887777888899999886432210        12355666666665544433  343321 


Q ss_pred             ------CHHH-HHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC
Q 029661           86 ------SLSA-IECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG  156 (190)
Q Consensus        86 ------~~~~-~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG  156 (190)
                            +++. .+..++  .+|-|++-+...   |..   ..++.|+.+++..     +.++-|.-|++++|+.++.+. 
T Consensus       158 ~~l~~~~~~~~v~dtver~~aDaVI~tG~~T---G~~---~d~~el~~a~~~~-----~~pvlvGSGv~~eN~~~~l~~-  225 (263)
T COG0434         158 VHLGNRSLEEAVKDTVERGLADAVIVTGSRT---GSP---PDLEELKLAKEAV-----DTPVLVGSGVNPENIEELLKI-  225 (263)
T ss_pred             cccCCcCHHHHHHHHHHccCCCEEEEecccC---CCC---CCHHHHHHHHhcc-----CCCEEEecCCCHHHHHHHHHH-
Confidence                  3322 222222  378887643332   322   2355566665554     368889999999999999998 


Q ss_pred             CCEEEEcccccCC
Q 029661          157 ANALVAGSAVFGA  169 (190)
Q Consensus       157 ad~~VvGsaI~~~  169 (190)
                      ||++|+||++=+.
T Consensus       226 adG~IvgT~lK~~  238 (263)
T COG0434         226 ADGVIVGTSLKKG  238 (263)
T ss_pred             cCceEEEEEEccC
Confidence            9999999998754

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=97.13  E-value=0.0077  Score=52.52  Aligned_cols=107  Identities=17%  Similarity=0.241  Sum_probs=70.9

Q ss_pred             chHHHHHHHHHHhC--CcEEEEEcCCCCHHHHHHhhc-c-cceEEEEeeecCCCCcc------cchhhHHHHHHHHHHHh
Q 029661           61 IHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-V-VDLVLIMSVNPGFGGQS------FIESQVKKISDLRRMCL  130 (190)
Q Consensus        61 ~~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~~~-~-~d~i~~m~v~pG~~gq~------~~~~~~~ki~~~~~~~~  130 (190)
                      +++.+.++.+|+..  +.+++=+......+.+...++ . +|.|.+-+...|++..+      +...+..-+.++++...
T Consensus       199 ~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~  278 (392)
T cd02808         199 EDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALV  278 (392)
T ss_pred             HHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHH
Confidence            45678899999975  466665655534444555443 3 89998765554432111      12224455666666554


Q ss_pred             hcC--CCCeEEEeCCCC-cccHHHHHHcCCCEEEEccccc
Q 029661          131 EKG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus       131 ~~~--~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~  167 (190)
                      +.+  .+++|.++|||+ ...+.++...|||.+-+|++..
T Consensus       279 ~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l  318 (392)
T cd02808         279 KNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAAL  318 (392)
T ss_pred             HcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHH
Confidence            332  357899999998 6889899999999999998755

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>PLN02623 pyruvate kinase

Probab=97.13  E-value=0.013  Score=53.24  Aligned_cols=140  Identities=16%  Similarity=0.174  Sum_probs=94.5

Q ss_pred             HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCCCcccc-
Q 029661           39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFGGQSFI-  115 (190)
Q Consensus        39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~gq~~~-  115 (190)
                      .++...+.|+|+|.+-.-- +.+++.++-+++++.|..+.+...-+|+  ++.+.+++..+|.|++-   ||-=+.... 
T Consensus       283 di~f~~~~~vD~ialSFVr-~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIg---rgDLgvelg~  358 (581)
T PLN02623        283 DIKFGVENKVDFYAVSFVK-DAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVA---RGDLGAELPI  358 (581)
T ss_pred             HHHHHHHcCCCEEEECCCC-CHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEEC---cchhhhhcCc
Confidence            4566789999999886553 3456777777787777776665544444  68899999999998862   221122222 


Q ss_pred             hhhHHHHHHHHHHHhhcCCCCeEEEeC--------CCCc-----ccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661          116 ESQVKKISDLRRMCLEKGVNPWIEVDG--------GVGP-----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS  182 (190)
Q Consensus       116 ~~~~~ki~~~~~~~~~~~~~~~i~vdG--------GI~~-----e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~  182 (190)
                      ++.....+++.+.+.+.+.  ++.+..        .-++     ..+..++..|+|.+.+|+-..-...|.++++.+++.
T Consensus       359 ~~v~~~qk~Ii~~~~~~gK--pvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I  436 (581)
T PLN02623        359 EEVPLLQEEIIRRCRSMGK--PVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV  436 (581)
T ss_pred             HHHHHHHHHHHHHHHHhCC--CEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHH
Confidence            4555555666665555443  333322        1234     378889999999999998877778999999998876


Q ss_pred             hc
Q 029661          183 KR  184 (190)
Q Consensus       183 ~~  184 (190)
                      +.
T Consensus       437 ~~  438 (581)
T PLN02623        437 AL  438 (581)
T ss_pred             HH
Confidence            53

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=97.13  E-value=0.0064  Score=54.51  Aligned_cols=141  Identities=16%  Similarity=0.222  Sum_probs=93.4

Q ss_pred             HHHHHhccC-CCCcEEEEEeecC-------h----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE-
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVE-------P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-   80 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~d-------p----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~-   80 (190)
                      +.++.+|+. ++.++-..+-=.|       |    ..+++.+.++|.|.+.+-......+++...++.+++.|..+-.. 
T Consensus        65 erlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i  144 (499)
T PRK12330         65 ERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTI  144 (499)
T ss_pred             HHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEE
Confidence            457888875 7777776552111       2    45788899999999777533223467888999999999987333 


Q ss_pred             ---EcCCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCccc
Q 029661           81 ---LNPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKN  148 (190)
Q Consensus        81 ---i~p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~  148 (190)
                         ++|..+.+.+.+++..     +|.|.+    +...|-..+..+.+.++.+|+..+   .+.+|.+    +-|....|
T Consensus       145 ~yt~sp~~t~e~~~~~a~~l~~~Gad~I~I----kDtaGll~P~~~~~LV~~Lk~~~~---~~ipI~~H~Hnt~GlA~An  217 (499)
T PRK12330        145 CYTVSPIHTVEGFVEQAKRLLDMGADSICI----KDMAALLKPQPAYDIVKGIKEACG---EDTRINLHCHSTTGVTLVS  217 (499)
T ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCCEEEe----CCCccCCCHHHHHHHHHHHHHhCC---CCCeEEEEeCCCCCcHHHH
Confidence               3677777665554432     566644    344565556667777888877653   1345654    45666667


Q ss_pred             HHHHHHcCCCEEE
Q 029661          149 AYKVIEAGANALV  161 (190)
Q Consensus       149 ~~~~~~aGad~~V  161 (190)
                      .-..+++|||.+=
T Consensus       218 ~laAieAGad~vD  230 (499)
T PRK12330        218 LMKAIEAGVDVVD  230 (499)
T ss_pred             HHHHHHcCCCEEE
Confidence            7788999999763

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=97.13  E-value=0.0017  Score=55.91  Aligned_cols=102  Identities=20%  Similarity=0.233  Sum_probs=68.2

Q ss_pred             CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661           11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI   90 (190)
Q Consensus        11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~   90 (190)
                      +..+.+++|++..+.|+.+.=- .+++ -+..+.++|+++|.+-.--+ ..                             
T Consensus       212 ~~w~~i~~~~~~~~~pvivKgv-~~~~-da~~~~~~G~~~i~vs~hGG-r~-----------------------------  259 (356)
T PF01070_consen  212 LTWDDIEWIRKQWKLPVIVKGV-LSPE-DAKRAVDAGVDGIDVSNHGG-RQ-----------------------------  259 (356)
T ss_dssp             -SHHHHHHHHHHCSSEEEEEEE--SHH-HHHHHHHTT-SEEEEESGTG-TS-----------------------------
T ss_pred             CCHHHHHHHhcccCCceEEEec-ccHH-HHHHHHhcCCCEEEecCCCc-cc-----------------------------
Confidence            4447788888888888887432 4444 34678888888888854321 21                             


Q ss_pred             HHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-ccHHHHHHcCCCEEEEcccccC
Q 029661           91 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus        91 ~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-e~~~~~~~aGad~~VvGsaI~~  168 (190)
                                           ..+.+.+++-|.++++..+   .+++|.+||||+. .++-+.+..|||.+-+|+.+..
T Consensus       260 ---------------------~d~~~~~~~~L~~i~~~~~---~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~  314 (356)
T PF01070_consen  260 ---------------------LDWGPPTIDALPEIRAAVG---DDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLY  314 (356)
T ss_dssp             ---------------------STTS-BHHHHHHHHHHHHT---TSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred             ---------------------CccccccccccHHHHhhhc---CCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence                                 2234557777788887654   3589999999994 6788889999999999998654

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>TIGR00433 bioB biotin synthetase

Probab=97.11  E-value=0.095  Score=43.46  Aligned_cols=161  Identities=17%  Similarity=0.109  Sum_probs=90.9

Q ss_pred             HHHHHhccC---CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc------------chHHHHHHHHHHhCCcEE
Q 029661           14 LVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST------------IHLHRTLNQIKDLGAKAG   78 (190)
Q Consensus        14 ~~v~~i~~~---~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~------------~~~~~~i~~i~~~g~~~g   78 (190)
                      +.++.+++.   .++.+.++.-..+ .+.++.+.++|++.+.+-.|. +.            +...+.++.+++.|++++
T Consensus        98 ~~~~~i~~~~~~~~i~~~~~~g~~~-~e~l~~Lk~aG~~~v~i~~E~-~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~  175 (296)
T TIGR00433        98 EYVEAMVQIVEEMGLKTCATLGLLD-PEQAKRLKDAGLDYYNHNLDT-SQEFYSNIISTHTYDDRVDTLENAKKAGLKVC  175 (296)
T ss_pred             HHHHHHHHHHHhCCCeEEecCCCCC-HHHHHHHHHcCCCEEEEcccC-CHHHHhhccCCCCHHHHHHHHHHHHHcCCEEE
Confidence            355555432   4555544432223 456788999999999998773 21            122356778888999986


Q ss_pred             EE--EcCCCCHHHHHHhhc-----ccceEEEEe--eecCCCCcccc----hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC
Q 029661           79 VV--LNPATSLSAIECVLD-----VVDLVLIMS--VNPGFGGQSFI----ESQVKKISDLRRMCLEKGVNPWIEVDGGVG  145 (190)
Q Consensus        79 ~~--i~p~t~~~~~~~~~~-----~~d~i~~m~--v~pG~~gq~~~----~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~  145 (190)
                      ..  +.+....+.+.+.+.     .++.+.+..  ..||+.=..+.    .+.++.+...|.+++.    -.|-+.+|=-
T Consensus       176 ~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~----~~i~~~~~~~  251 (296)
T TIGR00433       176 SGGIFGLGETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPK----AEIRLAGGRE  251 (296)
T ss_pred             EeEEEeCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCc----ceEEEeCCcc
Confidence            43  333444443333332     256554433  34575322222    2445666666666653    2355566553


Q ss_pred             ---cccHHH-HHHcCCCEEEEcccccCC-CCHH-HHHHHHH
Q 029661          146 ---PKNAYK-VIEAGANALVAGSAVFGA-KDYA-EAIKGIK  180 (190)
Q Consensus       146 ---~e~~~~-~~~aGad~~VvGsaI~~~-~dp~-~~~~~l~  180 (190)
                         .+..+. +..+|||.+++|-+++.. ..+. +-++-++
T Consensus       252 ~~~~~~~~~~~l~~G~n~i~~g~~~~~~g~~~~~~~~~~~~  292 (296)
T TIGR00433       252 VNMRELQQAMCFMAGANSIFVGDYLTTTGNPEEDKDKKLLA  292 (296)
T ss_pred             hhhhhhHHHHHHHhcCceEEEcCcccCCCCCCcHHHHHHHH
Confidence               123333 689999999999998854 3333 3444443

Catalyzes the last step of the biotin biosynthesis pathway.

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=97.08  E-value=0.011  Score=50.65  Aligned_cols=128  Identities=19%  Similarity=0.271  Sum_probs=81.2

Q ss_pred             CCCcEEEEEeecC-hHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh----------CCcEEEEEcCCC-CHHHH
Q 029661           23 TDLPLDVHLMIVE-PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL----------GAKAGVVLNPAT-SLSAI   90 (190)
Q Consensus        23 ~~~~i~~hlmv~d-p~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~----------g~~~g~~i~p~t-~~~~~   90 (190)
                      .++|+...=|-.= -.+....+.+.|.=.| +|.+. +.++-.+.++..|++          ...++.++.+.. ..+++
T Consensus        36 l~iPivsa~MDtVte~~mAiama~~Gglgv-ih~~~-~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~  113 (352)
T PF00478_consen   36 LKIPIVSAPMDTVTESEMAIAMARLGGLGV-IHRNM-SIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERA  113 (352)
T ss_dssp             ESSSEEE-SSTTTSSHHHHHHHHHTTSEEE-EESSS-CHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHH
T ss_pred             ecCceEecCccccchHHHHHHHHHhcCCce-ecCCC-CHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHH
Confidence            3567777655421 1235556677775444 67665 334444555555542          567888898875 46778


Q ss_pred             HHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC-CcccHHHHHHcCCCEEEEc
Q 029661           91 ECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAG  163 (190)
Q Consensus        91 ~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI-~~e~~~~~~~aGad~~VvG  163 (190)
                      +.+++ .+|++.+=+.+ |     .....++.++++|+..+    +.+| +.|+| +.+....+.++|||.+-||
T Consensus       114 ~~L~~agvD~ivID~a~-g-----~s~~~~~~ik~ik~~~~----~~~v-iaGNV~T~e~a~~L~~aGad~vkVG  177 (352)
T PF00478_consen  114 EALVEAGVDVIVIDSAH-G-----HSEHVIDMIKKIKKKFP----DVPV-IAGNVVTYEGAKDLIDAGADAVKVG  177 (352)
T ss_dssp             HHHHHTT-SEEEEE-SS-T-----TSHHHHHHHHHHHHHST----TSEE-EEEEE-SHHHHHHHHHTT-SEEEES
T ss_pred             HHHHHcCCCEEEccccC-c-----cHHHHHHHHHHHHHhCC----CceE-EecccCCHHHHHHHHHcCCCEEEEe
Confidence            88775 58998764333 2     23456777888887765    3666 45555 4899999999999999998

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PRK14566 triosephosphate isomerase; Provisional

Probab=97.07  E-value=0.019  Score=47.35  Aligned_cols=133  Identities=20%  Similarity=0.294  Sum_probs=82.2

Q ss_pred             HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCC-------HHHH----HHhhccc-----
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LSAI----ECVLDVV-----   97 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-------~~~~----~~~~~~~-----   97 (190)
                      .+++.++|++++++ |.|-     ...+.+..-++.+.++|+.+.+.+.-+..       .+.+    +..++..     
T Consensus        88 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~  167 (260)
T PRK14566         88 GQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAF  167 (260)
T ss_pred             HHHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhccchhhc
Confidence            67899999999999 4331     12345667888899999999988874321       1222    2222211     


Q ss_pred             ceEEEEeeec----CCCCcccchhhH-HHHHHHHHHHhhc----CCCCeEEEeCCCCcccHHHHH-HcCCCEEEEccccc
Q 029661           98 DLVLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLEK----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVF  167 (190)
Q Consensus        98 d~i~~m~v~p----G~~gq~~~~~~~-~ki~~~~~~~~~~----~~~~~i~vdGGI~~e~~~~~~-~aGad~~VvGsaI~  167 (190)
                      +. ++..-+|    |+ |+.-.|+-. +-...+|+.+.+.    ..+++|.-+|.++++|+.++. ....|++-+|++=.
T Consensus       168 ~~-ivIAYEPvWAIGT-G~~At~e~a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~dIDG~LVGgASL  245 (260)
T PRK14566        168 DN-AIIAYEPLWAVGT-GKSATPEQAQEVHAFIRKRLSEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASL  245 (260)
T ss_pred             Cc-EEEEECcHHhcCC-CCCCCHHHHHHHHHHHHHHHHhcCccccccceEEecCCCCHhHHHHHhcCCCCCeEEechHhc
Confidence            11 2335566    43 444333333 2234555554322    125789999999999999874 45599999999866


Q ss_pred             CCCCHHH
Q 029661          168 GAKDYAE  174 (190)
Q Consensus       168 ~~~dp~~  174 (190)
                      ++++..+
T Consensus       246 ~~~~F~~  252 (260)
T PRK14566        246 NSTEFLS  252 (260)
T ss_pred             CHHHHHH
Confidence            6544433

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=97.07  E-value=0.049  Score=50.20  Aligned_cols=149  Identities=16%  Similarity=0.102  Sum_probs=90.6

Q ss_pred             CHHH-HHHhccC-C--CCcEEEEEee-cChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC--
Q 029661           12 GPLV-VDALRPV-T--DLPLDVHLMI-VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA--   84 (190)
Q Consensus        12 G~~~-v~~i~~~-~--~~~i~~hlmv-~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~--   84 (190)
                      .++. .++|.+. +  ++..+. ..+ .++....+.+.+.+.|.+-+|... +. ...+.++.+++.++++.=++...  
T Consensus        40 ~~~~~a~~i~~~l~~~~v~~Vg-Vfv~~~~~~i~~~~~~~~ld~vQLHG~e-~~-~~~~~~~~l~~~~~~iika~~v~~~  116 (610)
T PRK13803         40 GNKFLAPNLEKAIRKAGGRPVG-VFVNESAKAMLKFSKKNGIDFVQLHGAE-SK-AEPAYCQRIYKKSIKKIGSFLIDDA  116 (610)
T ss_pred             CHHHHHHHHHHhCCCCCCCEEE-EEeCCCHHHHHHHHHhcCCCEEEECCCC-Cc-ccHHHHHHhhhcCCcEEEEEEeCCh
Confidence            4555 5555542 2  232333 234 456777777889999999999763 11 12456777777677766555443  


Q ss_pred             CCHHHHHHhhcccceEEEEeeec--CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHc-CCC--E
Q 029661           85 TSLSAIECVLDVVDLVLIMSVNP--GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GAN--A  159 (190)
Q Consensus        85 t~~~~~~~~~~~~d~i~~m~v~p--G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~a-Gad--~  159 (190)
                      ..++.+.++.+.+|++++=+-.|  |.+|+.|.-..+   +   .+.    ...++.+.|||+++|+.++++. .+.  +
T Consensus       117 ~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~fdw~~~---~---~~~----~~~p~iLAGGL~peNV~~ai~~~~p~~~g  186 (610)
T PRK13803        117 FGFEVLDEYRDHVKYFLFDNKTKIYGGSGKSFDWEKF---Y---NYN----FKFPFFLSGGLSPTNFDRIINLTHPQILG  186 (610)
T ss_pred             hhHHHHHhhhccCCEEEEcCCCCCCCCCCCccChHHh---h---hcc----cCCcEEEEeCCCHHHHHHHHhhhCCCceE
Confidence            33555666666689988755433  445777764332   2   221    1235779999999999998873 344  5


Q ss_pred             EEEcccccCC---CCHH
Q 029661          160 LVAGSAVFGA---KDYA  173 (190)
Q Consensus       160 ~VvGsaI~~~---~dp~  173 (190)
                      +=+-|.+=..   .|+.
T Consensus       187 VDvsSGvE~~pG~KD~~  203 (610)
T PRK13803        187 IDVSSGFEDSPGNKKLT  203 (610)
T ss_pred             EEccCcccCCCCCcCHH
Confidence            5555666533   4664

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=97.06  E-value=0.0097  Score=50.94  Aligned_cols=138  Identities=20%  Similarity=0.213  Sum_probs=78.4

Q ss_pred             HHHHHHcCCCEEEEcccCCCc----------chHHHHHHHHHHhCCcEEEE--EcCCC------------CH----HHHH
Q 029661           40 VPDFIKAGADIVSVHCEQSST----------IHLHRTLNQIKDLGAKAGVV--LNPAT------------SL----SAIE   91 (190)
Q Consensus        40 i~~~~~~Gad~v~vh~e~~~~----------~~~~~~i~~i~~~g~~~g~~--i~p~t------------~~----~~~~   91 (190)
                      ++.+.+.|||.|.+|.-.++.          ..+.++.+.++++|+...+-  ..+..            ..    ...+
T Consensus       112 ve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r  191 (340)
T PRK12858        112 VRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTME  191 (340)
T ss_pred             HHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHH
Confidence            688999999999998543222          13677888899999998774  22221            11    1122


Q ss_pred             Hhhc---ccceEEE-Eeee----cCCCCccc---chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc----ccHHHHHHcC
Q 029661           92 CVLD---VVDLVLI-MSVN----PGFGGQSF---IESQVKKISDLRRMCLEKGVNPWIEVDGGVGP----KNAYKVIEAG  156 (190)
Q Consensus        92 ~~~~---~~d~i~~-m~v~----pG~~gq~~---~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~----e~~~~~~~aG  156 (190)
                      ...+   .+|.+=+ .+++    .|++....   ..+..+..+++.+..+    -..|...||.+.    +++....++|
T Consensus       192 ~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~----~P~vvlsgG~~~~~f~~~l~~A~~aG  267 (340)
T PRK12858        192 EFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATD----LPFIFLSAGVSPELFRRTLEFACEAG  267 (340)
T ss_pred             HHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCC----CCEEEECCCCCHHHHHHHHHHHHHcC
Confidence            2221   2566532 1111    13321110   1112233333333221    134556999985    4777788999


Q ss_pred             C--CEEEEcccccCC-------CCHHHHHHHHHH
Q 029661          157 A--NALVAGSAVFGA-------KDYAEAIKGIKT  181 (190)
Q Consensus       157 a--d~~VvGsaI~~~-------~dp~~~~~~l~~  181 (190)
                      |  .++.+||++|+.       +|.+....+|+.
T Consensus       268 a~f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l~~  301 (340)
T PRK12858        268 ADFSGVLCGRATWQDGIEPYAAEGEEARRAWLNT  301 (340)
T ss_pred             CCccchhhhHHHHhhhhccccCCCHHHHHHHHHH
Confidence            9  999999999974       455555455543

>PLN02411 12-oxophytodienoate reductase

Probab=97.06  E-value=0.016  Score=50.57  Aligned_cols=130  Identities=21%  Similarity=0.290  Sum_probs=77.6

Q ss_pred             HHHHcCCCEEEEcccCC--------------------Ccc----hHHHHHHHHHHh-CC-cEEEEEcCCCC---------
Q 029661           42 DFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-GA-KAGVVLNPATS---------   86 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e~~--------------------~~~----~~~~~i~~i~~~-g~-~~g~~i~p~t~---------   86 (190)
                      .+.++|.|+|-+|+-.+                    +.+    =+.++++++|+. |- .+|+=++|...         
T Consensus       173 rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~  252 (391)
T PLN02411        173 NAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDP  252 (391)
T ss_pred             HHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcc
Confidence            35789999999995332                    111    145788888885 32 37887887321         


Q ss_pred             HH---HHHHhhc--------ccceEEEEeeecCCCCc----ccchh--hHHHHHHHHHHHhhcCCCCeEEEeCCCCcccH
Q 029661           87 LS---AIECVLD--------VVDLVLIMSVNPGFGGQ----SFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA  149 (190)
Q Consensus        87 ~~---~~~~~~~--------~~d~i~~m~v~pG~~gq----~~~~~--~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~  149 (190)
                      .+   .+.+.++        .+|+|-+.+-.....++    ...+.  .....+++|+..     +.++.+.||++++..
T Consensus       253 ~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v-----~~pvi~~G~i~~~~a  327 (391)
T PLN02411        253 LNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAY-----QGTFMCSGGFTRELG  327 (391)
T ss_pred             hhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHc-----CCCEEEECCCCHHHH
Confidence            11   1222232        26777653211000011    01111  112234455543     357889999999999


Q ss_pred             HHHHHcC-CCEEEEcccccCCCCHHHHH
Q 029661          150 YKVIEAG-ANALVAGSAVFGAKDYAEAI  176 (190)
Q Consensus       150 ~~~~~aG-ad~~VvGsaI~~~~dp~~~~  176 (190)
                      .++++.| ||.+.+|+++...+|....+
T Consensus       328 ~~~l~~g~aDlV~~gR~~iadPdl~~k~  355 (391)
T PLN02411        328 MQAVQQGDADLVSYGRLFISNPDLVLRF  355 (391)
T ss_pred             HHHHHcCCCCEEEECHHHHhCccHHHHH
Confidence            9999999 99999999998877765443

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=97.05  E-value=0.0067  Score=52.38  Aligned_cols=101  Identities=22%  Similarity=0.315  Sum_probs=68.0

Q ss_pred             CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661           11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI   90 (190)
Q Consensus        11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~   90 (190)
                      +..+.++.||+.++.|+.+.=- .+++ ..+.+.++|+|.|.+-.--  ...                            
T Consensus       211 ~tW~di~wlr~~~~~PiivKgV-~~~~-dA~~a~~~Gvd~I~VsnhG--Grq----------------------------  258 (367)
T PLN02493        211 LSWKDVQWLQTITKLPILVKGV-LTGE-DARIAIQAGAAGIIVSNHG--ARQ----------------------------  258 (367)
T ss_pred             CCHHHHHHHHhccCCCEEeecC-CCHH-HHHHHHHcCCCEEEECCCC--CCC----------------------------
Confidence            3457788899888888887432 3433 4567888899988875431  100                            


Q ss_pred             HHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEccccc
Q 029661           91 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus        91 ~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~  167 (190)
                            .|               ..+.+++-|.++++...   .+++|.+||||+ ..++-+....|||.+-+|+.+.
T Consensus       259 ------ld---------------~~~~t~~~L~ei~~av~---~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l  312 (367)
T PLN02493        259 ------LD---------------YVPATISALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV  312 (367)
T ss_pred             ------CC---------------CchhHHHHHHHHHHHhC---CCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence                  01               11334555666655443   247899999999 4677788899999999999755

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=97.05  E-value=0.0023  Score=55.52  Aligned_cols=117  Identities=21%  Similarity=0.259  Sum_probs=71.5

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE   91 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~   91 (190)
                      ..+.|+.||+.++.|+.+.=- .+++ -...+.++|+|.|.+-.--                 .+               
T Consensus       233 tW~di~~lr~~~~~pvivKgV-~s~~-dA~~a~~~Gvd~I~Vs~hG-----------------Gr---------------  278 (381)
T PRK11197        233 SWKDLEWIRDFWDGPMVIKGI-LDPE-DARDAVRFGADGIVVSNHG-----------------GR---------------  278 (381)
T ss_pred             CHHHHHHHHHhCCCCEEEEec-CCHH-HHHHHHhCCCCEEEECCCC-----------------CC---------------
Confidence            346688888877777777432 3333 4556777888888764321                 00               


Q ss_pred             HhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC-
Q 029661           92 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-  169 (190)
Q Consensus        92 ~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~-  169 (190)
                          +.|.               .+.+++-+.++++...   .+++|.+||||+ ..++-+....|||.+-+|+.+..+ 
T Consensus       279 ----~~d~---------------~~~t~~~L~~i~~a~~---~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~l  336 (381)
T PRK11197        279 ----QLDG---------------VLSSARALPAIADAVK---GDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYAL  336 (381)
T ss_pred             ----CCCC---------------cccHHHHHHHHHHHhc---CCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHH
Confidence                0000               0223444555544332   247899999999 578888899999999999976532 


Q ss_pred             -----CCHHHHHHHHHHhhc
Q 029661          170 -----KDYAEAIKGIKTSKR  184 (190)
Q Consensus       170 -----~dp~~~~~~l~~~~~  184 (190)
                           +.....++.|++.++
T Consensus       337 a~~G~~gv~~~l~~l~~El~  356 (381)
T PRK11197        337 AAAGQAGVANLLDLIEKEMR  356 (381)
T ss_pred             HhccHHHHHHHHHHHHHHHH
Confidence                 334455555555443

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=97.05  E-value=0.014  Score=49.76  Aligned_cols=124  Identities=18%  Similarity=0.257  Sum_probs=77.5

Q ss_pred             HHHHcCCCEEEEcccCC-----------Ccc-------------hHHHHHHHHHHh---CCcEEEEEcCC------CCHH
Q 029661           42 DFIKAGADIVSVHCEQS-----------STI-------------HLHRTLNQIKDL---GAKAGVVLNPA------TSLS   88 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e~~-----------~~~-------------~~~~~i~~i~~~---g~~~g~~i~p~------t~~~   88 (190)
                      .+.++|+|+|-+|.-.+           ...             -+.++++.+|+.   +..+++-+++.      ...+
T Consensus       162 ~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~  241 (336)
T cd02932         162 RAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLE  241 (336)
T ss_pred             HHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHH
Confidence            45779999999995210           010             135788888875   56678777753      2233


Q ss_pred             HHHHh---hc--ccceEEEEeeecC-CCCc---cc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-
Q 029661           89 AIECV---LD--VVDLVLIMSVNPG-FGGQ---SF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-  156 (190)
Q Consensus        89 ~~~~~---~~--~~d~i~~m~v~pG-~~gq---~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-  156 (190)
                      ...++   ++  .+|+|-+   .-| ...+   .. ....++..+++|+..     +++|...|||+ ++.+.++++.| 
T Consensus       242 e~~~ia~~Le~~gvd~iev---~~g~~~~~~~~~~~~~~~~~~~~~ir~~~-----~iPVi~~G~i~t~~~a~~~l~~g~  313 (336)
T cd02932         242 DSVELAKALKELGVDLIDV---SSGGNSPAQKIPVGPGYQVPFAERIRQEA-----GIPVIAVGLITDPEQAEAILESGR  313 (336)
T ss_pred             HHHHHHHHHHHcCCCEEEE---CCCCCCcccccCCCccccHHHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHHHcCC
Confidence            33232   22  2677754   222 1111   11 112234455555543     47899999995 89999999998 


Q ss_pred             CCEEEEcccccCCCCHH
Q 029661          157 ANALVAGSAVFGAKDYA  173 (190)
Q Consensus       157 ad~~VvGsaI~~~~dp~  173 (190)
                      +|++-+||+++..++.-
T Consensus       314 aD~V~~gR~~i~dP~~~  330 (336)
T cd02932         314 ADLVALGRELLRNPYWP  330 (336)
T ss_pred             CCeehhhHHHHhCccHH
Confidence            99999999999877653

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=97.03  E-value=0.016  Score=48.92  Aligned_cols=151  Identities=15%  Similarity=0.184  Sum_probs=85.8

Q ss_pred             HHHHHHhccCC-CCcEEEEEeecChHHHHH---HHHHcCCCEEEEcccC----------C-----CcchHHHHHHHHHHh
Q 029661           13 PLVVDALRPVT-DLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQ----------S-----STIHLHRTLNQIKDL   73 (190)
Q Consensus        13 ~~~v~~i~~~~-~~~i~~hlmv~dp~~~i~---~~~~~Gad~v~vh~e~----------~-----~~~~~~~~i~~i~~~   73 (190)
                      ....+.+...+ ..|+.+.|..+||+.+.+   .+.+.|+|.|=+-.-+          |     ..+.+.++++++++.
T Consensus        41 ~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~  120 (309)
T PF01207_consen   41 KKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA  120 (309)
T ss_dssp             HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH
T ss_pred             cceeecccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc
Confidence            34445555543 469999999999987654   3455689998873211          0     123467788888874


Q ss_pred             -CCcEEEEEcCCCC--HHHHHHhh---c--ccceEEEEeeecCCCCcccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCC
Q 029661           74 -GAKAGVVLNPATS--LSAIECVL---D--VVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGV  144 (190)
Q Consensus        74 -g~~~g~~i~p~t~--~~~~~~~~---~--~~d~i~~m~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI  144 (190)
                       +..+.+=+.....  .+...+++   .  .++.|.   +|+-+..|.+. +.-++.++++++.+     ++++..-|+|
T Consensus       121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~---vH~Rt~~q~~~~~a~w~~i~~i~~~~-----~ipvi~NGdI  192 (309)
T PF01207_consen  121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAIT---VHGRTRKQRYKGPADWEAIAEIKEAL-----PIPVIANGDI  192 (309)
T ss_dssp             -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEE---EECS-TTCCCTS---HHHHHHCHHC------TSEEEEESS-
T ss_pred             cccceEEecccccccchhHHHHHHHHhhhcccceEE---EecCchhhcCCcccchHHHHHHhhcc-----cceeEEcCcc
Confidence             5555554443222  22222322   2  256664   56555566555 45577777777654     3789999999


Q ss_pred             C-cccHHHHHHc-CCCEEEEcccccCCCC
Q 029661          145 G-PKNAYKVIEA-GANALVAGSAVFGAKD  171 (190)
Q Consensus       145 ~-~e~~~~~~~a-Gad~~VvGsaI~~~~d  171 (190)
                      + .+.+.++.+. |+|++-+|++.+..+.
T Consensus       193 ~s~~d~~~~~~~tg~dgvMigRgal~nP~  221 (309)
T PF01207_consen  193 FSPEDAERMLEQTGADGVMIGRGALGNPW  221 (309)
T ss_dssp             -SHHHHHHHCCCH-SSEEEESHHHCC-CC
T ss_pred             CCHHHHHHHHHhcCCcEEEEchhhhhcCH
Confidence            9 7888887766 9999999998876553

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>PRK07094 biotin synthase; Provisional

Probab=97.00  E-value=0.031  Score=47.17  Aligned_cols=143  Identities=20%  Similarity=0.258  Sum_probs=83.7

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC------------cchHHHHHHHHHHhCCcEE--E
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAKAG--V   79 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~------------~~~~~~~i~~i~~~g~~~g--~   79 (190)
                      ++++.|++.+++.+.+++-.. ..+.++.+.++|++.+.+..|+.+            .++..+.++.+++.|+.++  +
T Consensus       107 ~l~~~i~~~~~l~i~~~~g~~-~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~  185 (323)
T PRK07094        107 DIIKEIKKELDVAITLSLGER-SYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGF  185 (323)
T ss_pred             HHHHHHHccCCceEEEecCCC-CHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceE
Confidence            355566654454444433222 245778899999999999887631            1234567788888998764  3


Q ss_pred             EEc-CCCCHHHHHHhhc-----ccceEEEEeee--cCCCCcc----cchhhHHHHHHHHHHHhhcCCCCeEEEeCC---C
Q 029661           80 VLN-PATSLSAIECVLD-----VVDLVLIMSVN--PGFGGQS----FIESQVKKISDLRRMCLEKGVNPWIEVDGG---V  144 (190)
Q Consensus        80 ~i~-p~t~~~~~~~~~~-----~~d~i~~m~v~--pG~~gq~----~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG---I  144 (190)
                      .+. |....+.+.+.+.     .++.+.++...  ||+--..    -....++.+..+|-++++.    .|...++   +
T Consensus       186 iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~----~i~~~~~~~~~  261 (323)
T PRK07094        186 MVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDA----NIPATTALGTL  261 (323)
T ss_pred             EEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCC----CCcccCCcccc
Confidence            444 4545454444332     25666554443  4542111    1234466677777777642    3434444   4


Q ss_pred             CcccHHHHHHcCCCEEE
Q 029661          145 GPKNAYKVIEAGANALV  161 (190)
Q Consensus       145 ~~e~~~~~~~aGad~~V  161 (190)
                      .++-......+|||.+.
T Consensus       262 ~~~~~~~~l~~Gan~~~  278 (323)
T PRK07094        262 NPDGREKGLKAGANVVM  278 (323)
T ss_pred             CchhHHHHHHcCCceec
Confidence            45555678899999776

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=96.99  E-value=0.016  Score=48.09  Aligned_cols=144  Identities=14%  Similarity=0.127  Sum_probs=85.4

Q ss_pred             cCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc---------------chHHHHHHHH
Q 029661            6 VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST---------------IHLHRTLNQI   70 (190)
Q Consensus         6 vpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~---------------~~~~~~i~~i   70 (190)
                      +|.++=--..++.+.+..+..+-+.  +.+.. -++.+.++|++.+.+..-+ +.               +...+.++.+
T Consensus        48 ~p~~~d~~~~~~~l~~~~~~~~~~~--~~~~~-dv~~A~~~g~~~i~i~~~~-Sd~~~~~~~~~s~~~~~~~~~~~v~~a  123 (274)
T cd07938          48 VPQMADAEEVLAGLPRRPGVRYSAL--VPNLR-GAERALAAGVDEVAVFVSA-SETFSQKNINCSIAESLERFEPVAELA  123 (274)
T ss_pred             ccccCCHHHHHhhcccCCCCEEEEE--CCCHH-HHHHHHHcCcCEEEEEEec-CHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3443322244555544333344332  33433 4888999999998886443 11               2355678899


Q ss_pred             HHhCCcEEEEEcC--------CCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCe
Q 029661           71 KDLGAKAGVVLNP--------ATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW  137 (190)
Q Consensus        71 ~~~g~~~g~~i~p--------~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~  137 (190)
                      |++|+++.+.+..        .++.+.+.++.+.     +|.|.+    +.+.|...+..+.+.++.+++..+    +.+
T Consensus       124 k~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~----~~~  195 (274)
T cd07938         124 KAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISL----GDTIGVATPAQVRRLLEAVLERFP----DEK  195 (274)
T ss_pred             HHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE----CCCCCccCHHHHHHHHHHHHHHCC----CCe
Confidence            9999998654331        2344544444332     566654    444565556666777777776543    245


Q ss_pred             EEE----eCCCCcccHHHHHHcCCCEEE
Q 029661          138 IEV----DGGVGPKNAYKVIEAGANALV  161 (190)
Q Consensus       138 i~v----dGGI~~e~~~~~~~aGad~~V  161 (190)
                      |.+    |-|.-..|.-..+++|||.+=
T Consensus       196 i~~H~Hnd~GlA~AN~laA~~aGa~~id  223 (274)
T cd07938         196 LALHFHDTRGQALANILAALEAGVRRFD  223 (274)
T ss_pred             EEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence            554    556666677788999999763

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=96.99  E-value=0.02  Score=47.84  Aligned_cols=144  Identities=15%  Similarity=0.148  Sum_probs=89.0

Q ss_pred             cCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHH
Q 029661            6 VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIK   71 (190)
Q Consensus         6 vpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~   71 (190)
                      +|-++--.+.++.|++..+..+-+  ++.|.. -++.+.++|+|.|.+-....              ..+.+.+.++.+|
T Consensus        54 ~p~~~d~~e~~~~l~~~~~~~~~~--l~~~~~-~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak  130 (287)
T PRK05692         54 VPQMADAAEVMAGIQRRPGVTYAA--LTPNLK-GLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAK  130 (287)
T ss_pred             ccccccHHHHHHhhhccCCCeEEE--EecCHH-HHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            444443456677776544444333  344433 35888999999988864331              0123667899999


Q ss_pred             HhCCcEEEEEc-----C---CCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661           72 DLGAKAGVVLN-----P---ATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI  138 (190)
Q Consensus        72 ~~g~~~g~~i~-----p---~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i  138 (190)
                      ++|+++...+.     |   .++.+.+.++.+.     +|.|.+    +.+.|...+.++.+.++.+|+..+.    .+|
T Consensus       131 ~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~----~~i  202 (287)
T PRK05692        131 QAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISL----GDTIGVGTPGQVRAVLEAVLAEFPA----ERL  202 (287)
T ss_pred             HcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEe----ccccCccCHHHHHHHHHHHHHhCCC----CeE
Confidence            99998864333     2   2345555554432     676654    4455665666777778888776532    345


Q ss_pred             EE----eCCCCcccHHHHHHcCCCEE
Q 029661          139 EV----DGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus       139 ~v----dGGI~~e~~~~~~~aGad~~  160 (190)
                      .+    |-|....|.-..+++|||.+
T Consensus       203 ~~H~Hn~~Gla~AN~laA~~aG~~~i  228 (287)
T PRK05692        203 AGHFHDTYGQALANIYASLEEGITVF  228 (287)
T ss_pred             EEEecCCCCcHHHHHHHHHHhCCCEE
Confidence            54    55666667778899999986

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=96.95  E-value=0.038  Score=47.77  Aligned_cols=130  Identities=22%  Similarity=0.322  Sum_probs=77.4

Q ss_pred             HHHHcCCCEEEEcccCC--------------------Ccch----HHHHHHHHHHh-CC--cEEEEEcCCCC-------H
Q 029661           42 DFIKAGADIVSVHCEQS--------------------STIH----LHRTLNQIKDL-GA--KAGVVLNPATS-------L   87 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e~~--------------------~~~~----~~~~i~~i~~~-g~--~~g~~i~p~t~-------~   87 (190)
                      .+.++|.|+|=+|+-.+                    +.++    +.++++++|+. |.  -+|+=++|.+.       .
T Consensus       157 rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~  236 (363)
T COG1902         157 RAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTI  236 (363)
T ss_pred             HHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCH
Confidence            46889999999996432                    1111    45777787773 33  47888887544       2


Q ss_pred             HHHHH---hhcc---cceEEEEeeecCCCCc-ccc-h-hhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-
Q 029661           88 SAIEC---VLDV---VDLVLIMSVNPGFGGQ-SFI-E-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-  156 (190)
Q Consensus        88 ~~~~~---~~~~---~d~i~~m~v~pG~~gq-~~~-~-~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-  156 (190)
                      +...+   .++.   +|++-+.+-..-..++ ... + .-....++++...     ..++.+.|+|+ ++++.++++.| 
T Consensus       237 ~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~-----~~pvi~~G~i~~~~~Ae~~l~~g~  311 (363)
T COG1902         237 EEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV-----RIPVIAVGGINDPEQAEEILASGR  311 (363)
T ss_pred             HHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc-----CCCEEEeCCCCCHHHHHHHHHcCC
Confidence            22222   2322   5777653322110111 111 1 1122233333322     25777888887 89999999998 


Q ss_pred             CCEEEEcccccCCCCHHHHH
Q 029661          157 ANALVAGSAVFGAKDYAEAI  176 (190)
Q Consensus       157 ad~~VvGsaI~~~~dp~~~~  176 (190)
                      ||.+.+|+++...+|....+
T Consensus       312 aDlVa~gR~~ladP~~~~k~  331 (363)
T COG1902         312 ADLVAMGRPFLADPDLVLKA  331 (363)
T ss_pred             CCEEEechhhhcCccHHHHH
Confidence            99999999998877765444

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=96.94  E-value=0.018  Score=52.82  Aligned_cols=140  Identities=17%  Similarity=0.179  Sum_probs=94.3

Q ss_pred             HHHHHHhccC-CCCcEEEEE----ee---cCh----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661           13 PLVVDALRPV-TDLPLDVHL----MI---VEP----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        13 ~~~v~~i~~~-~~~~i~~hl----mv---~dp----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      .+.++.+|+. ++.++-..+    .+   .-|    ..|++.+.+.|.|.+-+-......+++...++++|+.|+.+-.+
T Consensus        63 werl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~  142 (596)
T PRK14042         63 WSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGA  142 (596)
T ss_pred             HHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEE
Confidence            4677888875 888888777    22   123    34788889999999887543223567888999999999988665


Q ss_pred             ----EcCCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcc
Q 029661           81 ----LNPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK  147 (190)
Q Consensus        81 ----i~p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e  147 (190)
                          .+|....+.+.+++..     +|.|.+    ....|...+..+.+.++.+|+..+     .+|.+    +-|....
T Consensus       143 i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~I----kDtaG~l~P~~v~~lv~alk~~~~-----ipi~~H~Hnt~Gla~a  213 (596)
T PRK14042        143 ICYTTSPVHTLDNFLELGKKLAEMGCDSIAI----KDMAGLLTPTVTVELYAGLKQATG-----LPVHLHSHSTSGLASI  213 (596)
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHcCCCEEEe----CCcccCCCHHHHHHHHHHHHhhcC-----CEEEEEeCCCCCcHHH
Confidence                4455566555554432     566644    334565556666777888876542     45554    4556666


Q ss_pred             cHHHHHHcCCCEEE
Q 029661          148 NAYKVIEAGANALV  161 (190)
Q Consensus       148 ~~~~~~~aGad~~V  161 (190)
                      |.-..+++|||.+=
T Consensus       214 n~laAieaGad~iD  227 (596)
T PRK14042        214 CHYEAVLAGCNHID  227 (596)
T ss_pred             HHHHHHHhCCCEEE
Confidence            77788999999763

>PLN02363 phosphoribosylanthranilate isomerase

Probab=96.92  E-value=0.08  Score=43.58  Aligned_cols=142  Identities=14%  Similarity=0.132  Sum_probs=81.7

Q ss_pred             CCHHHHHHhccC-CC--CcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661           11 IGPLVVDALRPV-TD--LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL   87 (190)
Q Consensus        11 ~G~~~v~~i~~~-~~--~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~   87 (190)
                      ..++..++|.+. +.  ...+.=+.-.+++...+.+.+.|.|.|-+|...    +. +.++.+++ +.++.-+++.....
T Consensus        83 Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG~e----~~-~~~~~l~~-~~~iikai~v~~~~  156 (256)
T PLN02363         83 ISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHGNG----SR-AAFSRLVR-ERKVIYVLNANEDG  156 (256)
T ss_pred             CCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC----CH-HHHHHhhc-CCcEEEEEEECchH
Confidence            345666777653 22  222222223466777888899999999999753    22 24445543 35555566554332


Q ss_pred             ---HHHHH-hhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHH-cCCCEEEE
Q 029661           88 ---SAIEC-VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVA  162 (190)
Q Consensus        88 ---~~~~~-~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~-aGad~~Vv  162 (190)
                         +...+ +...+|++++=+. .|.+|+.|.-..+   +. ..+.    ...++.+.|||+++|+.++++ .++.++=+
T Consensus       157 ~~~~~~~~~~~~~~D~~LlDs~-~GGtG~t~DW~~l---~~-~~~~----~~~p~iLAGGL~peNV~~ai~~~~P~GVDV  227 (256)
T PLN02363        157 KLLNVVPEEDCHLADWILVDSA-TGGSGKGFNWQNF---KL-PSVR----SRNGWLLAGGLTPENVHEAVSLLKPTGVDV  227 (256)
T ss_pred             HHHHHHHhhccccCCEEEEeCC-CCCCCCccCHHHh---cc-cccc----cCCCEEEECCCCHHHHHHHHHhcCCcEEEe
Confidence               22222 2234788876442 3666777754322   10 0111    123567999999999999876 56777766


Q ss_pred             ccccc
Q 029661          163 GSAVF  167 (190)
Q Consensus       163 GsaI~  167 (190)
                      -|.+=
T Consensus       228 sSGVE  232 (256)
T PLN02363        228 SSGIC  232 (256)
T ss_pred             CCccc
Confidence            66654

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=96.90  E-value=0.045  Score=45.71  Aligned_cols=145  Identities=16%  Similarity=0.232  Sum_probs=95.9

Q ss_pred             HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEEc----
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVLN----   82 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i~----   82 (190)
                      .++.+.+..++|+-+||==..-.+.+..+.++|++.|-+=....+. ++   -.++++.++.+|+.+    |-.-.    
T Consensus        65 ~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~  144 (283)
T PRK07998         65 IVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDD  144 (283)
T ss_pred             HHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccc
Confidence            3344444568899999855434457888999999999984332121 22   356778888888754    32211    


Q ss_pred             ------CCCCHHHHHHhhcc--cceEE--EEeeecCCCCcccchhh-HHHHHHHHHHHhhcCCCCeEEEeCCCC--cccH
Q 029661           83 ------PATSLSAIECVLDV--VDLVL--IMSVNPGFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVG--PKNA  149 (190)
Q Consensus        83 ------p~t~~~~~~~~~~~--~d~i~--~m~v~pG~~gq~~~~~~-~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~~  149 (190)
                            .-|..+...++.+.  +|.+.  +-++| |...  . |.. +++++++++..     ++++..=||-.  .+.+
T Consensus       145 ~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~H-G~Y~--~-p~l~~~~l~~I~~~~-----~vPLVlHGgSG~~~e~~  215 (283)
T PRK07998        145 HVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVH-GLED--I-PRIDIPLLKRIAEVS-----PVPLVIHGGSGIPPEIL  215 (283)
T ss_pred             ccccccccCCHHHHHHHHHHhCcCeeehhccccc-cCCC--C-CCcCHHHHHHHHhhC-----CCCEEEeCCCCCCHHHH
Confidence                  13667777777753  78653  22333 2221  1 333 67777777754     47888888776  5899


Q ss_pred             HHHHHcCCCEEEEcccccC
Q 029661          150 YKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       150 ~~~~~aGad~~VvGsaI~~  168 (190)
                      +++++.|+.-+-+||.+..
T Consensus       216 ~~ai~~Gi~KiNi~Tel~~  234 (283)
T PRK07998        216 RSFVNYKVAKVNIASDLRK  234 (283)
T ss_pred             HHHHHcCCcEEEECHHHHH
Confidence            9999999999999998864

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=96.90  E-value=0.11  Score=41.55  Aligned_cols=159  Identities=15%  Similarity=0.168  Sum_probs=97.2

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHHH---HHcCCCE-EEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDF---IKAGADI-VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA   89 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~---~~~Gad~-v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~   89 (190)
                      +.+++|++..+.++.+-+.-.|++..++.+   .+.+-.. |=++.    ...--+.++.+++.|+++++..-- ++.+.
T Consensus        41 ~~~~~i~~~~~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKIP~----T~~gl~ai~~L~~~gi~v~~T~V~-s~~Qa  115 (211)
T cd00956          41 AVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKIPV----TEDGLKAIKKLSEEGIKTNVTAIF-SAAQA  115 (211)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEEcC----cHhHHHHHHHHHHcCCceeeEEec-CHHHH
Confidence            445555554444666666566777665543   4442222 22332    223456788888889888775431 22222


Q ss_pred             HHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccC-
Q 029661           90 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG-  168 (190)
Q Consensus        90 ~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~-  168 (190)
                      +.-....++||..   .-|.-. .......+.++++.+++..++.+.+|.+.|=-|++++.++..+|+|.+-++-.+++ 
T Consensus       116 ~~Aa~AGA~yvsP---~vgR~~-~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~  191 (211)
T cd00956         116 LLAAKAGATYVSP---FVGRID-DLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQ  191 (211)
T ss_pred             HHHHHcCCCEEEE---ecChHh-hcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCHHHHHH
Confidence            3333345777642   223210 11223467788888888877777888777777799999999999999999976664 


Q ss_pred             ---CCCHHHHHHHHHH
Q 029661          169 ---AKDYAEAIKGIKT  181 (190)
Q Consensus       169 ---~~dp~~~~~~l~~  181 (190)
                         .+-..+.++.+.+
T Consensus       192 l~~~~~t~~~v~~F~~  207 (211)
T cd00956         192 LLKHPLTDKGVEKFLE  207 (211)
T ss_pred             HhcCccHHHHHHHHHH
Confidence               4555677776654

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=96.88  E-value=0.023  Score=52.13  Aligned_cols=139  Identities=19%  Similarity=0.235  Sum_probs=89.0

Q ss_pred             HHHHHHhccC-CCCcEEEEEeec-------Ch----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661           13 PLVVDALRPV-TDLPLDVHLMIV-------EP----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        13 ~~~v~~i~~~-~~~~i~~hlmv~-------dp----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      .+.++.+|+. ++.++...+-=.       -|    ..+++.+.++|+|++.+-......+++...++.+|+.|..+-..
T Consensus        64 ~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~  143 (593)
T PRK14040         64 WERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGT  143 (593)
T ss_pred             HHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEE
Confidence            3567777775 777776544311       12    34688889999999887543212456778999999999985332


Q ss_pred             ----EcCCCCHHHHHHhhc-----ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcc
Q 029661           81 ----LNPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK  147 (190)
Q Consensus        81 ----i~p~t~~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e  147 (190)
                          .+|....+.+.+++.     .+|.|.+    ....|-..+..+.+.++.+|+.+     +.+|.+    +-|....
T Consensus       144 i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i----~Dt~G~l~P~~~~~lv~~lk~~~-----~~pi~~H~Hnt~GlA~A  214 (593)
T PRK14040        144 LSYTTSPVHTLQTWVDLAKQLEDMGVDSLCI----KDMAGLLKPYAAYELVSRIKKRV-----DVPLHLHCHATTGLSTA  214 (593)
T ss_pred             EEEeeCCccCHHHHHHHHHHHHHcCCCEEEE----CCCCCCcCHHHHHHHHHHHHHhc-----CCeEEEEECCCCchHHH
Confidence                356555555555443     2676654    33445555666677777777654     245554    5566666


Q ss_pred             cHHHHHHcCCCEE
Q 029661          148 NAYKVIEAGANAL  160 (190)
Q Consensus       148 ~~~~~~~aGad~~  160 (190)
                      |.-..+++|||.+
T Consensus       215 n~laAieAGa~~v  227 (593)
T PRK14040        215 TLLKAIEAGIDGV  227 (593)
T ss_pred             HHHHHHHcCCCEE
Confidence            7778899999976

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=96.88  E-value=0.0083  Score=51.83  Aligned_cols=62  Identities=15%  Similarity=0.228  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC---C---CCHHHHHHHHHHhh
Q 029661          119 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG---A---KDYAEAIKGIKTSK  183 (190)
Q Consensus       119 ~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~---~---~dp~~~~~~l~~~~  183 (190)
                      ++-|.++++..+   .+++|.+||||+ ..++.+....|||.+-+|+.+..   .   +.....++.|++.+
T Consensus       270 ~~~L~ei~~av~---~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El  338 (367)
T TIGR02708       270 FDSLQEVAEAVD---KRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKEL  338 (367)
T ss_pred             HHHHHHHHHHhC---CCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            344455554332   247899999999 57788888899999999998442   1   23345555555544

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=96.79  E-value=0.046  Score=47.18  Aligned_cols=122  Identities=19%  Similarity=0.244  Sum_probs=74.7

Q ss_pred             HHHHcCCCEEEEcccCC--------------------Ccc----hHHHHHHHHHHh-CC-cEEEEEcCCC---------C
Q 029661           42 DFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-GA-KAGVVLNPAT---------S   86 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e~~--------------------~~~----~~~~~i~~i~~~-g~-~~g~~i~p~t---------~   86 (190)
                      .+.++|+|+|-+|+-.+                    +.+    =+.++++++|+. |- .+|+=+++..         .
T Consensus       167 rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~  246 (362)
T PRK10605        167 NAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPN  246 (362)
T ss_pred             HHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCC
Confidence            35789999999995331                    111    144788888874 21 3677676531         2


Q ss_pred             HHH-HH---Hhhc--ccceEEEEeeecCCC-CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC-CC
Q 029661           87 LSA-IE---CVLD--VVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-AN  158 (190)
Q Consensus        87 ~~~-~~---~~~~--~~d~i~~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG-ad  158 (190)
                      .+. ..   +.++  .+|+|-+-+  +... +..+.   ..--+++|+..     +.++.+.|+++++.+.++++.| +|
T Consensus       247 ~~e~~~~~~~~L~~~giD~i~vs~--~~~~~~~~~~---~~~~~~ik~~~-----~~pv~~~G~~~~~~ae~~i~~G~~D  316 (362)
T PRK10605        247 EEADALYLIEQLGKRGIAYLHMSE--PDWAGGEPYS---DAFREKVRARF-----HGVIIGAGAYTAEKAETLIGKGLID  316 (362)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEecc--ccccCCcccc---HHHHHHHHHHC-----CCCEEEeCCCCHHHHHHHHHcCCCC
Confidence            222 22   2232  268886532  2222 22221   22224444443     3568888999999999999988 99


Q ss_pred             EEEEcccccCCCCHH
Q 029661          159 ALVAGSAVFGAKDYA  173 (190)
Q Consensus       159 ~~VvGsaI~~~~dp~  173 (190)
                      .+-+||++...+|..
T Consensus       317 ~V~~gR~~iadPd~~  331 (362)
T PRK10605        317 AVAFGRDYIANPDLV  331 (362)
T ss_pred             EEEECHHhhhCccHH
Confidence            999999998877654

>PRK08508 biotin synthase; Provisional

Probab=96.78  E-value=0.13  Score=42.70  Aligned_cols=163  Identities=20%  Similarity=0.209  Sum_probs=91.9

Q ss_pred             HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC--------CcchHH---HHHHHHHHhCCcE--EE
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--------STIHLH---RTLNQIKDLGAKA--GV   79 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~--------~~~~~~---~~i~~i~~~g~~~--g~   79 (190)
                      ++++.||+. +++.+.+-+=..+ .+.++.++++|+|.+..-.|+.        +..+..   +.++.+++.|+++  ++
T Consensus        79 ei~~~ik~~~p~l~i~~s~G~~~-~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~  157 (279)
T PRK08508         79 EAAKAVKKEVPGLHLIACNGTAS-VEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGG  157 (279)
T ss_pred             HHHHHHHhhCCCcEEEecCCCCC-HHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeeccee
Confidence            455666654 3332222111112 4467889999999999765542        112233   4677788999887  45


Q ss_pred             EEcCCCCHHHHHHhh----c-ccceEEEEeeec--CCC--Cccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC---c
Q 029661           80 VLNPATSLSAIECVL----D-VVDLVLIMSVNP--GFG--GQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG---P  146 (190)
Q Consensus        80 ~i~p~t~~~~~~~~~----~-~~d~i~~m~v~p--G~~--gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~---~  146 (190)
                      .+......+...+.+    + ..|.|-+.-..|  |+.  .+.. ..+.++-+.-.|-+.+    +..|-+.||-.   .
T Consensus       158 I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp----~~~i~~~~gr~~~~~  233 (279)
T PRK08508        158 IFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALP----NARLMVAGGREVVFG  233 (279)
T ss_pred             EEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CceeeecCChhhhch
Confidence            555554444333322    2 145454333333  332  1111 1234444555555554    35688899873   2


Q ss_pred             ccHHHHHHcCCCEEEEcccccCC-CCHHHHHHHHHH
Q 029661          147 KNAYKVIEAGANALVAGSAVFGA-KDYAEAIKGIKT  181 (190)
Q Consensus       147 e~~~~~~~aGad~~VvGsaI~~~-~dp~~~~~~l~~  181 (190)
                      +.-+.+..+|||.+++|-+++.. .++++-.+-+++
T Consensus       234 ~~~~~~~~~g~n~~~~g~~lt~~g~~~~~d~~~~~~  269 (279)
T PRK08508        234 ERQYEIFEAGANAIVIGDYLTTKGEAPKKDIEKLKS  269 (279)
T ss_pred             hhHHHHHhcCCcceeecCcccCCCCChHHHHHHHHH
Confidence            34556788999999999999865 456655555554

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=96.76  E-value=0.034  Score=48.32  Aligned_cols=123  Identities=17%  Similarity=0.201  Sum_probs=75.4

Q ss_pred             HHHcCCCEEEEcccC-C--------------------Cc----chHHHHHHHHHHh---CCcEEEEEcCCC---------
Q 029661           43 FIKAGADIVSVHCEQ-S--------------------ST----IHLHRTLNQIKDL---GAKAGVVLNPAT---------   85 (190)
Q Consensus        43 ~~~~Gad~v~vh~e~-~--------------------~~----~~~~~~i~~i~~~---g~~~g~~i~p~t---------   85 (190)
                      +.++|.|+|-+|.-. +                    +.    .-+.++++.+|+.   +..+++=+++..         
T Consensus       159 a~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~  238 (382)
T cd02931         159 AKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGA  238 (382)
T ss_pred             HHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccccc
Confidence            468999999998632 1                    00    1145788888884   456777676521         


Q ss_pred             -----------CHHHHHHh---hc--ccceEEEEeeecCCCCc------c-cch-hh-HHHHHHHHHHHhhcCCCCeEEE
Q 029661           86 -----------SLSAIECV---LD--VVDLVLIMSVNPGFGGQ------S-FIE-SQ-VKKISDLRRMCLEKGVNPWIEV  140 (190)
Q Consensus        86 -----------~~~~~~~~---~~--~~d~i~~m~v~pG~~gq------~-~~~-~~-~~ki~~~~~~~~~~~~~~~i~v  140 (190)
                                 ..+...++   ++  .+|+|-+   ..|...+      . +.+ .. ++..+++|+..     +.++.+
T Consensus       239 ~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pvi~  310 (382)
T cd02931         239 LPGEEFQEKGRDLEEGLKAAKILEEAGYDALDV---DAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-----DVPVIM  310 (382)
T ss_pred             ccccccccCCCCHHHHHHHHHHHHHhCCCEEEe---CCCCCcccccccCCccCCcchhHHHHHHHHHHC-----CCCEEE
Confidence                       12322222   22  2688754   3332111      0 111 11 23345555543     468899


Q ss_pred             eCCCC-cccHHHHHHcC-CCEEEEcccccCCCCHH
Q 029661          141 DGGVG-PKNAYKVIEAG-ANALVAGSAVFGAKDYA  173 (190)
Q Consensus       141 dGGI~-~e~~~~~~~aG-ad~~VvGsaI~~~~dp~  173 (190)
                      .|||+ ++++.++++.| +|.+-+|+++...+|.-
T Consensus       311 ~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~  345 (382)
T cd02931         311 AGRMEDPELASEAINEGIADMISLGRPLLADPDVV  345 (382)
T ss_pred             eCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHH
Confidence            99996 78899998876 99999999998877654

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=96.73  E-value=0.014  Score=47.08  Aligned_cols=114  Identities=23%  Similarity=0.322  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHhCCcEEEEEcCCCCH-HHHHHhhcccceEEEEee--ecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661           62 HLHRTLNQIKDLGAKAGVVLNPATSL-SAIECVLDVVDLVLIMSV--NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI  138 (190)
Q Consensus        62 ~~~~~i~~i~~~g~~~g~~i~p~t~~-~~~~~~~~~~d~i~~m~v--~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i  138 (190)
                      ++.+++++++.. ++=|+.+-|-+.. -.+.+-++.+....+|..  ..| +|+..  .....|+.+++.     .++++
T Consensus       115 D~~etl~Aae~L-v~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIG-Sg~G~--~n~~~l~iiie~-----a~VPv  185 (262)
T COG2022         115 DPIETLKAAEQL-VKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIG-SGLGL--QNPYNLEIIIEE-----ADVPV  185 (262)
T ss_pred             ChHHHHHHHHHH-HhCCCEEeeccCCCHHHHHHHHhcCceEecccccccc-CCcCc--CCHHHHHHHHHh-----CCCCE
Confidence            456666666653 1223333332221 113333444555556643  234 34332  223334444433     35899


Q ss_pred             EEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          139 EVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       139 ~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      .||-||. +.++.+..+.|+|.+-+-|+|-.+.||...++.++-.++
T Consensus       186 iVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~  232 (262)
T COG2022         186 IVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE  232 (262)
T ss_pred             EEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence            9999999 799999999999999999999999999999999876543

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=96.72  E-value=0.0083  Score=48.49  Aligned_cols=122  Identities=18%  Similarity=0.193  Sum_probs=73.4

Q ss_pred             HHHHHHcCCCEEEEcccC---CC------cchHHHHHHHHHHhCCcEEEEEcCCCCH----------HHHHHhhc--ccc
Q 029661           40 VPDFIKAGADIVSVHCEQ---SS------TIHLHRTLNQIKDLGAKAGVVLNPATSL----------SAIECVLD--VVD   98 (190)
Q Consensus        40 i~~~~~~Gad~v~vh~e~---~~------~~~~~~~i~~i~~~g~~~g~~i~p~t~~----------~~~~~~~~--~~d   98 (190)
                      ++.+.+.|||.|-+...-   .+      .+++.++.+.++++|+++.+-..+..+-          ....++..  .+|
T Consensus        82 ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD  161 (236)
T PF01791_consen   82 VEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGAD  161 (236)
T ss_dssp             HHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-S
T ss_pred             HHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCC
Confidence            678899999988875321   01      2356778888888888887763322211          12222221  268


Q ss_pred             eEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcC--CCCeEEEeCCC------C-cccHHHHHHcCC--CEEEEccccc
Q 029661           99 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG--VNPWIEVDGGV------G-PKNAYKVIEAGA--NALVAGSAVF  167 (190)
Q Consensus        99 ~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~--~~~~i~vdGGI------~-~e~~~~~~~aGa--d~~VvGsaI~  167 (190)
                      +|=.  ..|+.     ...+.+.++.+++......  .++.|-+.||+      + .+.+.+++++||  -++..|+.||
T Consensus       162 ~vKt--~tg~~-----~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~  234 (236)
T PF01791_consen  162 FVKT--STGKP-----VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW  234 (236)
T ss_dssp             EEEE--E-SSS-----SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred             EEEe--cCCcc-----ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            8742  22322     3344555666666665322  23449999999      4 456666779999  8999999998


Q ss_pred             C
Q 029661          168 G  168 (190)
Q Consensus       168 ~  168 (190)
                      +
T Consensus       235 q  235 (236)
T PF01791_consen  235 Q  235 (236)
T ss_dssp             T
T ss_pred             c
Confidence            6

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=96.72  E-value=0.038  Score=49.22  Aligned_cols=141  Identities=16%  Similarity=0.228  Sum_probs=91.5

Q ss_pred             HHHHHHhccC-CCCcEEEEEeecC-------h----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661           13 PLVVDALRPV-TDLPLDVHLMIVE-------P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        13 ~~~v~~i~~~-~~~~i~~hlmv~d-------p----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      .+.++.+|+. ++.++-..+-=.|       |    ..|++.+.+.|.|.+-+-......+++...++.+|+.|+.+.++
T Consensus        72 werlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~  151 (468)
T PRK12581         72 WERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLC  151 (468)
T ss_pred             HHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence            4567888875 7777776655323       2    34688889999999887533223567889999999999997554


Q ss_pred             Ec----CCCCHHHHHHhh----c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcc
Q 029661           81 LN----PATSLSAIECVL----D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK  147 (190)
Q Consensus        81 i~----p~t~~~~~~~~~----~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e  147 (190)
                      ++    |...++.+.+++    + .+|.|.+    ....|...+..+.+.++.+|+..     +.+|.+    +-|....
T Consensus       152 i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~I----kDtaG~l~P~~v~~Lv~alk~~~-----~~pi~~H~Hnt~GlA~A  222 (468)
T PRK12581        152 IAYTTSPVHTLNYYLSLVKELVEMGADSICI----KDMAGILTPKAAKELVSGIKAMT-----NLPLIVHTHATSGISQM  222 (468)
T ss_pred             EEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE----CCCCCCcCHHHHHHHHHHHHhcc-----CCeEEEEeCCCCccHHH
Confidence            43    444444333333    2 2666654    34456555666677777777632     355654    4455556


Q ss_pred             cHHHHHHcCCCEEEE
Q 029661          148 NAYKVIEAGANALVA  162 (190)
Q Consensus       148 ~~~~~~~aGad~~Vv  162 (190)
                      |.-..+++|||.+=+
T Consensus       223 n~laAieAGad~vD~  237 (468)
T PRK12581        223 TYLAAVEAGADRIDT  237 (468)
T ss_pred             HHHHHHHcCCCEEEe
Confidence            777889999997643

>TIGR02814 pfaD_fam PfaD family protein

Probab=96.64  E-value=0.063  Score=47.51  Aligned_cols=147  Identities=20%  Similarity=0.262  Sum_probs=79.9

Q ss_pred             HHHhccCCCC-c-EEEEEeec--Ch---HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC------------c
Q 029661           16 VDALRPVTDL-P-LDVHLMIV--EP---EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA------------K   76 (190)
Q Consensus        16 v~~i~~~~~~-~-i~~hlmv~--dp---~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~------------~   76 (190)
                      |+++|+.++. | +-+.|+..  +|   ...++.+.+.|+..|......+ . ++.  +...|..|+            +
T Consensus        62 I~~ir~~~~~~p~fGVNL~~~~~~~~~e~~~v~l~l~~~V~~veasa~~~-~-~p~--~v~~r~~G~~~~~~g~~~~~~~  137 (444)
T TIGR02814        62 IHRIQQALPGGPAYGVNLIHSPSDPALEWGLVDLLLRHGVRIVEASAFMQ-L-TPA--LVRYRAKGLHRDADGRVVIRNR  137 (444)
T ss_pred             HHHHHHhcCCCCceEEEecccCCCcccHHHHHHHHHHcCCCEEEeccccC-C-Ccc--hhhhhhccccccccccccccce
Confidence            4456654444 6 99988774  34   2467888899999988764421 1 121  124455554            1


Q ss_pred             EEEEEc-CC--------CCHHHHHHhh----------------cccceEEEEeeecCCC-CcccchhhHHHHHHHHHHHh
Q 029661           77 AGVVLN-PA--------TSLSAIECVL----------------DVVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCL  130 (190)
Q Consensus        77 ~g~~i~-p~--------t~~~~~~~~~----------------~~~d~i~~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~  130 (190)
                      +..-++ |.        .|-+.++.+.                ..+|.|.+- .+.|.- |+.-....+..|.++|+...
T Consensus       138 ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~  216 (444)
T TIGR02814       138 LIAKVSRPEVAEAFMSPAPAHILQKLLAEGRITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLM  216 (444)
T ss_pred             EEEecCCHHHHHHhcCCCcHHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHh
Confidence            111111 00        0111111111                115777553 444321 22111222444444444442


Q ss_pred             h-cC--CCCeEEEeCCCC-cccHHHHHHcCCCEEEEccccc
Q 029661          131 E-KG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus       131 ~-~~--~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~  167 (190)
                      + .+  ..++|.+.|||. ++.+..+...|||++.+||...
T Consensus       217 ~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fl  257 (444)
T TIGR02814       217 RRYGYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQ  257 (444)
T ss_pred             hcccCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHH
Confidence            1 11  246799999996 8999999999999999999754

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional

Probab=96.63  E-value=0.05  Score=50.34  Aligned_cols=133  Identities=17%  Similarity=0.278  Sum_probs=81.0

Q ss_pred             HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCC-------CHHHHH----Hhhcccce---
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPAT-------SLSAIE----CVLDVVDL---   99 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t-------~~~~~~----~~~~~~d~---   99 (190)
                      .+++.++|++++++ |.|-     .+.+.+.+-++.+.++|+.+.+.+.-+.       ..+.+.    ..++.++.   
T Consensus       474 a~mLkd~G~~~viiGHSERR~~f~Etd~~V~~K~~~al~~GL~pIvCVGEtl~ere~g~t~~vv~~Ql~~~l~~v~~~~~  553 (645)
T PRK13962        474 GPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQV  553 (645)
T ss_pred             HHHHHHcCCCEEEECcccccCCcCcchHHHHHHHHHHHHCCCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHccCCHhHc
Confidence            67899999999999 4331     0134455556889999999988887321       112222    22222221   


Q ss_pred             -EEEEeeec----CCCCcccchhh-HHHHHHHHHHHhhc-----CCCCeEEEeCCCCcccHHHHH-HcCCCEEEEccccc
Q 029661          100 -VLIMSVNP----GFGGQSFIESQ-VKKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVF  167 (190)
Q Consensus       100 -i~~m~v~p----G~~gq~~~~~~-~~ki~~~~~~~~~~-----~~~~~i~vdGGI~~e~~~~~~-~aGad~~VvGsaI~  167 (190)
                       =++.+-+|    |+ |+.-.|+. -+-.+.+|+.+.+.     ..+++|.-+|.++++|+.++. ....|++-+|++=.
T Consensus       554 ~~ivIAYEPVWAIGT-G~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diDG~LVGgASL  632 (645)
T PRK13962        554 KKVVIAYEPVWAIGT-GKVATPEQAQEVHAFIRKLVAELYGEEAARKVRILYGGSVKSENAAGLFNQPDIDGGLVGGASL  632 (645)
T ss_pred             CcEEEEECcHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHhChhhhccceEEecCCCCHhHHHHHhcCCCCCeEEeehHhc
Confidence             12335566    44 44433333 33345566655332     124789999999999999875 45589999998766


Q ss_pred             CCCCHH
Q 029661          168 GAKDYA  173 (190)
Q Consensus       168 ~~~dp~  173 (190)
                      ++++..
T Consensus       633 ~~~~F~  638 (645)
T PRK13962        633 KAQEFA  638 (645)
T ss_pred             CHHHHH
Confidence            544333

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=96.62  E-value=0.053  Score=46.35  Aligned_cols=138  Identities=17%  Similarity=0.240  Sum_probs=87.6

Q ss_pred             HHHHHHhccC-CCCcEEEEEee--cChHHHHHHHHHcCCCEEE--EcccCCCcchHHHHHHHHHHhCCcEEEEEc--CCC
Q 029661           13 PLVVDALRPV-TDLPLDVHLMI--VEPEQRVPDFIKAGADIVS--VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN--PAT   85 (190)
Q Consensus        13 ~~~v~~i~~~-~~~~i~~hlmv--~dp~~~i~~~~~~Gad~v~--vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~--p~t   85 (190)
                      .+.++.+++. ++..+-+.+.-  .+. +.++.+.++|+|.|-  +|...  .+...+.++.+|+.|+++.+.+.  +.+
T Consensus        65 ~e~i~~~~~~~~~~~~~~ll~pg~~~~-~dl~~a~~~gvd~iri~~~~~e--~~~~~~~i~~ak~~G~~v~~~l~~a~~~  141 (337)
T PRK08195         65 EEYIEAAAEVVKQAKIAALLLPGIGTV-DDLKMAYDAGVRVVRVATHCTE--ADVSEQHIGLARELGMDTVGFLMMSHMA  141 (337)
T ss_pred             HHHHHHHHHhCCCCEEEEEeccCcccH-HHHHHHHHcCCCEEEEEEecch--HHHHHHHHHHHHHCCCeEEEEEEeccCC
Confidence            4667777553 55566554321  233 457889999999855  55542  34578899999999999876543  445


Q ss_pred             CHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC----CCCcccHHHHHHcC
Q 029661           86 SLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG----GVGPKNAYKVIEAG  156 (190)
Q Consensus        86 ~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG----GI~~e~~~~~~~aG  156 (190)
                      +.+.+.+++..     +|.|.+    .-..|...+..+.+.++.+++.++   .+.+|.+=+    |...-|.-.++++|
T Consensus       142 ~~e~l~~~a~~~~~~Ga~~i~i----~DT~G~~~P~~v~~~v~~l~~~l~---~~i~ig~H~HnnlGla~ANslaAi~aG  214 (337)
T PRK08195        142 PPEKLAEQAKLMESYGAQCVYV----VDSAGALLPEDVRDRVRALRAALK---PDTQVGFHGHNNLGLGVANSLAAVEAG  214 (337)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEe----CCCCCCCCHHHHHHHHHHHHHhcC---CCCeEEEEeCCCcchHHHHHHHHHHhC
Confidence            55555554432     566654    334565566777777888877652   235565544    44445777888999


Q ss_pred             CCEE
Q 029661          157 ANAL  160 (190)
Q Consensus       157 ad~~  160 (190)
                      |+.+
T Consensus       215 a~~i  218 (337)
T PRK08195        215 ATRI  218 (337)
T ss_pred             CCEE
Confidence            9943

>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase

Probab=96.60  E-value=0.096  Score=42.90  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=83.5

Q ss_pred             CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHH--------------------------HHhCCc
Q 029661           23 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI--------------------------KDLGAK   76 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i--------------------------~~~g~~   76 (190)
                      .+....+..--.+| ..++.+.++|+++|.++.-. +.++..++++++                          +..+-.
T Consensus        61 ~g~~~~VRvp~~~~-~~i~r~LD~Ga~gIivP~v~-taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~  138 (249)
T TIGR03239        61 SASAPVVRPPWNEP-VIIKRLLDIGFYNFLIPFVE-SAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDN  138 (249)
T ss_pred             cCCCcEEECCCCCH-HHHHHHhcCCCCEEEecCcC-CHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccc
Confidence            34444554433444 35788999999999997543 245555555322                          222223


Q ss_pred             EEEEEcCCCC--HHHHHHhhc--ccceEEEE----eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCccc
Q 029661           77 AGVVLNPATS--LSAIECVLD--VVDLVLIM----SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN  148 (190)
Q Consensus        77 ~g~~i~p~t~--~~~~~~~~~--~~d~i~~m----~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~  148 (190)
                      +.+...-+|+  ++.+++++.  .+|.+.+-    +..-|..++...|+...-+.++..-..+.+..  ..+ ..-+++.
T Consensus       139 ~~vi~~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~--~g~-~~~~~~~  215 (249)
T TIGR03239       139 ITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKP--CGI-LAPVEAD  215 (249)
T ss_pred             cEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCC--EEE-cCCCHHH
Confidence            3333333454  566777764  37777763    22234445555677777777777666665532  322 3456788


Q ss_pred             HHHHHHcCCCEEEEccc
Q 029661          149 AYKVIEAGANALVAGSA  165 (190)
Q Consensus       149 ~~~~~~aGad~~VvGsa  165 (190)
                      .+.+++.|++.+++|+-
T Consensus       216 ~~~~~~~G~~~~~~~~D  232 (249)
T TIGR03239       216 ARRYLEWGATFVAVGSD  232 (249)
T ss_pred             HHHHHHcCCCEEEEhHH
Confidence            99999999999999964

In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=96.55  E-value=0.055  Score=44.70  Aligned_cols=116  Identities=17%  Similarity=0.116  Sum_probs=75.3

Q ss_pred             HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEc--CCCCHHHHHHhhcc-----cceEEEEeeecCCC
Q 029661           38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFG  110 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~--p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~  110 (190)
                      ..++.+.++|++.|.+-......+...+.++.+|++|.++.+.+.  ..++.+.+.+++..     +|.|.+    +-+.
T Consensus        86 ~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l----~DT~  161 (266)
T cd07944          86 DLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYI----VDSF  161 (266)
T ss_pred             HHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEE----ecCC
Confidence            567778889999865542211255678889999999998876533  34566666655532     566654    3445


Q ss_pred             CcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661          111 GQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus       111 gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~  160 (190)
                      |...+..+.+.++.+++..++   +.+|.+    +-|....|.-..+++||+.+
T Consensus       162 G~~~P~~v~~lv~~l~~~~~~---~~~i~~H~Hn~~Gla~AN~laA~~aGa~~v  212 (266)
T cd07944         162 GSMYPEDIKRIISLLRSNLDK---DIKLGFHAHNNLQLALANTLEAIELGVEII  212 (266)
T ss_pred             CCCCHHHHHHHHHHHHHhcCC---CceEEEEeCCCccHHHHHHHHHHHcCCCEE
Confidence            655566667777777765432   245654    44555557778889999865

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=96.53  E-value=0.031  Score=47.99  Aligned_cols=127  Identities=13%  Similarity=0.085  Sum_probs=75.4

Q ss_pred             HHHHcCCCEEEEcccCC--------C----------------cchHHHHHHHHHHh-CC--cEEEEEcCC------CCHH
Q 029661           42 DFIKAGADIVSVHCEQS--------S----------------TIHLHRTLNQIKDL-GA--KAGVVLNPA------TSLS   88 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e~~--------~----------------~~~~~~~i~~i~~~-g~--~~g~~i~p~------t~~~   88 (190)
                      .+.++|.|+|-+|.-.+        +                ..-+.++++.+|+. |.  .+++=+++.      .+.+
T Consensus       145 ~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~  224 (353)
T cd02930         145 LAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWE  224 (353)
T ss_pred             HHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHH
Confidence            35778999999997210        1                11245788888884 44  455545532      2333


Q ss_pred             HHH---Hhhc--ccceEEEEe-ee--cCCCCc-ccchh-hHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-
Q 029661           89 AIE---CVLD--VVDLVLIMS-VN--PGFGGQ-SFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-  156 (190)
Q Consensus        89 ~~~---~~~~--~~d~i~~m~-v~--pG~~gq-~~~~~-~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-  156 (190)
                      ...   +.++  .+|+|-+-. .+  |-...+ .+.+. -++..+++|+..     +.+|.+.|+++ ++.+.++++.| 
T Consensus       225 e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v-----~iPVi~~G~i~~~~~a~~~i~~g~  299 (353)
T cd02930         225 EVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV-----DIPVIASNRINTPEVAERLLADGD  299 (353)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC-----CCCEEEcCCCCCHHHHHHHHHCCC
Confidence            222   2232  278886521 11  110000 11111 133345555543     47899999996 88999999877 


Q ss_pred             CCEEEEcccccCCCCHH
Q 029661          157 ANALVAGSAVFGAKDYA  173 (190)
Q Consensus       157 ad~~VvGsaI~~~~dp~  173 (190)
                      +|++-+|+++...++.-
T Consensus       300 ~D~V~~gR~~l~dP~~~  316 (353)
T cd02930         300 ADMVSMARPFLADPDFV  316 (353)
T ss_pred             CChhHhhHHHHHCccHH
Confidence            99999999998877654

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=96.51  E-value=0.057  Score=46.73  Aligned_cols=128  Identities=20%  Similarity=0.172  Sum_probs=75.8

Q ss_pred             HHHHcCCCEEEEcccCC--------------------Cc----chHHHHHHHHHHh-C--CcEEEEEcCCC--------C
Q 029661           42 DFIKAGADIVSVHCEQS--------------------ST----IHLHRTLNQIKDL-G--AKAGVVLNPAT--------S   86 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e~~--------------------~~----~~~~~~i~~i~~~-g--~~~g~~i~p~t--------~   86 (190)
                      .+.++|+|+|-+|.-.+                    +.    .-+.++++.+|+. |  ..+++=+++..        .
T Consensus       158 ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~  237 (370)
T cd02929         158 RARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIES  237 (370)
T ss_pred             HHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCC
Confidence            45788999999985431                    11    1145788888885 5  34566666432        2


Q ss_pred             HHHH---HHhhc-ccceEEEEeeecCCCCc--ccchh--hHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-
Q 029661           87 LSAI---ECVLD-VVDLVLIMSVNPGFGGQ--SFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-  156 (190)
Q Consensus        87 ~~~~---~~~~~-~~d~i~~m~v~pG~~gq--~~~~~--~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-  156 (190)
                      .+..   .+.++ .+|++-+-.-.....+.  .+.+.  .++..+++|+..     +.++.+.||++ ++++.++++.| 
T Consensus       238 ~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pvi~~G~i~~~~~~~~~l~~g~  312 (370)
T cd02929         238 EGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT-----SKPVVGVGRFTSPDKMVEVVKSGI  312 (370)
T ss_pred             HHHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHHHHHHHHHC-----CCCEEEeCCCCCHHHHHHHHHcCC
Confidence            3222   22232 36776442111000011  11111  133445555543     46788889997 79999999987 


Q ss_pred             CCEEEEcccccCCCCHHH
Q 029661          157 ANALVAGSAVFGAKDYAE  174 (190)
Q Consensus       157 ad~~VvGsaI~~~~dp~~  174 (190)
                      +|.+-+|+++...+|...
T Consensus       313 ~D~V~~gR~~ladP~l~~  330 (370)
T cd02929         313 LDLIGAARPSIADPFLPK  330 (370)
T ss_pred             CCeeeechHhhhCchHHH
Confidence            999999999998776643

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=96.51  E-value=0.057  Score=46.63  Aligned_cols=125  Identities=16%  Similarity=0.172  Sum_probs=75.8

Q ss_pred             HHHHcCCCEEEEcccCC--------------------Cc----chHHHHHHHHHHh-C--CcEEEEEcCC----------
Q 029661           42 DFIKAGADIVSVHCEQS--------------------ST----IHLHRTLNQIKDL-G--AKAGVVLNPA----------   84 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e~~--------------------~~----~~~~~~i~~i~~~-g--~~~g~~i~p~----------   84 (190)
                      .+.++|+|+|-+|.-.+                    +.    .-+.++++++|+. |  ..+++=+++.          
T Consensus       152 ~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g  231 (361)
T cd04747         152 DARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLA  231 (361)
T ss_pred             HHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCC
Confidence            45778999999995431                    11    1145888999985 4  5678877752          


Q ss_pred             CCHHHHHHh---hc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC---------------
Q 029661           85 TSLSAIECV---LD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV---------------  144 (190)
Q Consensus        85 t~~~~~~~~---~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI---------------  144 (190)
                      ...+...++   ++  .+|+|-+-+-  +...+.+.....+-.+++|+..     +.++.+.|||               
T Consensus       232 ~~~~e~~~~~~~l~~~gvd~i~vs~g--~~~~~~~~~~~~~~~~~~k~~~-----~~pv~~~G~i~~~~~~~~~~~~~~~  304 (361)
T cd04747         232 DTPDELEALLAPLVDAGVDIFHCSTR--RFWEPEFEGSELNLAGWTKKLT-----GLPTITVGSVGLDGDFIGAFAGDEG  304 (361)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEecCC--CccCCCcCccchhHHHHHHHHc-----CCCEEEECCcccccccccccccccc
Confidence            112222222   33  2788654221  1112222221223334455443     3678999998               


Q ss_pred             ----CcccHHHHHHcC-CCEEEEcccccCCCCHH
Q 029661          145 ----GPKNAYKVIEAG-ANALVAGSAVFGAKDYA  173 (190)
Q Consensus       145 ----~~e~~~~~~~aG-ad~~VvGsaI~~~~dp~  173 (190)
                          +++.+.++++.| +|.+-+|+++...++.-
T Consensus       305 ~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~  338 (361)
T cd04747         305 ASPASLDRLLERLERGEFDLVAVGRALLSDPAWV  338 (361)
T ss_pred             cccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHH
Confidence                578888888866 99999999988866553

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=96.50  E-value=0.2  Score=42.74  Aligned_cols=140  Identities=17%  Similarity=0.162  Sum_probs=86.4

Q ss_pred             HHHHHHhccC-CCCcEEEEEee--cChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE--cCCCCH
Q 029661           13 PLVVDALRPV-TDLPLDVHLMI--VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSL   87 (190)
Q Consensus        13 ~~~v~~i~~~-~~~~i~~hlmv--~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i--~p~t~~   87 (190)
                      .+.++++++. .+..+-+.+.-  .+ .+.++.+.++|+|.|.+-......+...+.++.+|+.|.++...+  ...++.
T Consensus        64 ~e~i~~~~~~~~~~~~~~ll~pg~~~-~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~  142 (333)
T TIGR03217        64 LEYIEAAADVVKRAKVAVLLLPGIGT-VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPP  142 (333)
T ss_pred             HHHHHHHHHhCCCCEEEEEeccCccC-HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCH
Confidence            3556666543 44444443311  12 245788999999998854222113457889999999999987654  344555


Q ss_pred             HHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC----cccHHHHHHcCCC
Q 029661           88 SAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG----PKNAYKVIEAGAN  158 (190)
Q Consensus        88 ~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~----~e~~~~~~~aGad  158 (190)
                      +.+.++++.     +|.|.+    +-..|...+.++.+.++.+|+..+   .+.+|.+=+-=|    .-|.-..+++||+
T Consensus       143 e~l~~~a~~~~~~Ga~~i~i----~DT~G~~~P~~v~~~v~~l~~~l~---~~i~ig~H~HnnlGla~ANslaAi~aGa~  215 (333)
T TIGR03217       143 EKLAEQAKLMESYGADCVYI----VDSAGAMLPDDVRDRVRALKAVLK---PETQVGFHAHHNLSLAVANSIAAIEAGAT  215 (333)
T ss_pred             HHHHHHHHHHHhcCCCEEEE----ccCCCCCCHHHHHHHHHHHHHhCC---CCceEEEEeCCCCchHHHHHHHHHHhCCC
Confidence            555554432     566654    234465566677777888877653   235666555444    3477788899999


Q ss_pred             EE
Q 029661          159 AL  160 (190)
Q Consensus       159 ~~  160 (190)
                      .+
T Consensus       216 ~i  217 (333)
T TIGR03217       216 RI  217 (333)
T ss_pred             EE
Confidence            74

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=96.50  E-value=0.024  Score=45.56  Aligned_cols=138  Identities=20%  Similarity=0.228  Sum_probs=82.2

Q ss_pred             HHHhccC-CCCcEEEEEeec--ChHHHHHHHHHcCCCEEEEcccCCC--------------cchHHHHHHHHHHhCCcEE
Q 029661           16 VDALRPV-TDLPLDVHLMIV--EPEQRVPDFIKAGADIVSVHCEQSS--------------TIHLHRTLNQIKDLGAKAG   78 (190)
Q Consensus        16 v~~i~~~-~~~~i~~hlmv~--dp~~~i~~~~~~Gad~v~vh~e~~~--------------~~~~~~~i~~i~~~g~~~g   78 (190)
                      ++.+++. ++..+.++....  +....++.+.++|++.+.+.....+              .+.+.+.++.+|++|.++.
T Consensus        46 v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~  125 (237)
T PF00682_consen   46 VRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA  125 (237)
T ss_dssp             HHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred             hhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE
Confidence            4444432 445666544432  1223356667799999998765421              2356788999999999997


Q ss_pred             EEEcC--CCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcc
Q 029661           79 VVLNP--ATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK  147 (190)
Q Consensus        79 ~~i~p--~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e  147 (190)
                      +.+..  .++.+.+.++...     +|.|.+    +.+.|...+..+.+.++.+++..++    .+|.+    |-|.-..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~v~~lv~~~~~~~~~----~~l~~H~Hnd~Gla~A  197 (237)
T PF00682_consen  126 FGCEDASRTDPEELLELAEALAEAGADIIYL----ADTVGIMTPEDVAELVRALREALPD----IPLGFHAHNDLGLAVA  197 (237)
T ss_dssp             EEETTTGGSSHHHHHHHHHHHHHHT-SEEEE----EETTS-S-HHHHHHHHHHHHHHSTT----SEEEEEEBBTTS-HHH
T ss_pred             eCccccccccHHHHHHHHHHHHHcCCeEEEe----eCccCCcCHHHHHHHHHHHHHhccC----CeEEEEecCCccchhH
Confidence            76543  3455555555432     576654    2333444455566777888877653    44554    4555556


Q ss_pred             cHHHHHHcCCCEEE
Q 029661          148 NAYKVIEAGANALV  161 (190)
Q Consensus       148 ~~~~~~~aGad~~V  161 (190)
                      |.-..+++|||.+=
T Consensus       198 n~laA~~aGa~~id  211 (237)
T PF00682_consen  198 NALAALEAGADRID  211 (237)
T ss_dssp             HHHHHHHTT-SEEE
T ss_pred             HHHHHHHcCCCEEE
Confidence            77788999999963

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>PLN02746 hydroxymethylglutaryl-CoA lyase

Probab=96.47  E-value=0.048  Score=46.84  Aligned_cols=145  Identities=16%  Similarity=0.115  Sum_probs=87.6

Q ss_pred             cCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHH
Q 029661            6 VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIK   71 (190)
Q Consensus         6 vpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~   71 (190)
                      +|.+.--.+.++.+++..+..+-+  .+.| .+-++.+.++|++.|.+-.-+.              ..+.+.+.++.+|
T Consensus        96 vPqmad~~ev~~~i~~~~~~~~~~--l~~n-~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak  172 (347)
T PLN02746         96 VPQLADAKDVMAAVRNLEGARFPV--LTPN-LKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAK  172 (347)
T ss_pred             ccccccHHHHHHHHHhccCCceeE--EcCC-HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            455543346677887654433322  1223 3357889999999988752210              0223457888899


Q ss_pred             HhCCcEEEEEc-----C---CCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661           72 DLGAKAGVVLN-----P---ATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI  138 (190)
Q Consensus        72 ~~g~~~g~~i~-----p---~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i  138 (190)
                      ++|.++...++     |   .++.+.+.++...     +|.|.+    +.+.|...+.++.+.++.+++..+.    .+|
T Consensus       173 ~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l----~DT~G~a~P~~v~~lv~~l~~~~~~----~~i  244 (347)
T PLN02746        173 KHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISL----GDTIGVGTPGTVVPMLEAVMAVVPV----DKL  244 (347)
T ss_pred             HcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEe----cCCcCCcCHHHHHHHHHHHHHhCCC----CeE
Confidence            99999864442     2   2455555554432     676654    3445655566677777777765432    234


Q ss_pred             E----EeCCCCcccHHHHHHcCCCEEE
Q 029661          139 E----VDGGVGPKNAYKVIEAGANALV  161 (190)
Q Consensus       139 ~----vdGGI~~e~~~~~~~aGad~~V  161 (190)
                      .    =|-|....|.-..+++||+.|=
T Consensus       245 ~~H~Hnd~GlA~AN~lAA~~aGa~~vd  271 (347)
T PLN02746        245 AVHFHDTYGQALANILVSLQMGISTVD  271 (347)
T ss_pred             EEEECCCCChHHHHHHHHHHhCCCEEE
Confidence            4    3567776788788999999763

>PRK05826 pyruvate kinase; Provisional

Probab=96.45  E-value=0.1  Score=46.62  Aligned_cols=140  Identities=14%  Similarity=0.197  Sum_probs=87.5

Q ss_pred             HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCCCccc-
Q 029661           39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFGGQSF-  114 (190)
Q Consensus        39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~gq~~-  114 (190)
                      .++.+.+.|+|+|.+..-. +.+++.++.+.+.+.|. .+.+...-+|+  ++.+++++..+|.|++-.-+-|   ... 
T Consensus       178 ~i~~ald~g~d~I~~sfV~-saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrgDLg---~elg  253 (465)
T PRK05826        178 DIKFAAEQGVDYIAVSFVR-SAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGDLG---VEIP  253 (465)
T ss_pred             HHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcchhh---hhcC
Confidence            5677899999999998554 35678888888888776 66665444444  6788888888999886222211   111 


Q ss_pred             chhhHHHHHHHHHHHhhcCCCCeEEEeC--------CCCc-----ccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661          115 IESQVKKISDLRRMCLEKGVNPWIEVDG--------GVGP-----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       115 ~~~~~~ki~~~~~~~~~~~~~~~i~vdG--------GI~~-----e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~  181 (190)
                      .+....-.+++.+.+.+.+.  ++.+.-        ...|     ..+..++..|+|.+.+..-=-....|.++++.+++
T Consensus       254 ~~~v~~~qk~Ii~~c~~~gK--pvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~  331 (465)
T PRK05826        254 DEEVPGLQKKIIRKAREAGK--PVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMAR  331 (465)
T ss_pred             cHhHHHHHHHHHHHHHHcCC--CEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHH
Confidence            23334444454555544432  333331        1111     14555666799999987443334688999988877


Q ss_pred             hhc
Q 029661          182 SKR  184 (190)
Q Consensus       182 ~~~  184 (190)
                      .+.
T Consensus       332 I~~  334 (465)
T PRK05826        332 ICK  334 (465)
T ss_pred             HHH
Confidence            554

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=96.44  E-value=0.049  Score=46.41  Aligned_cols=110  Identities=15%  Similarity=0.207  Sum_probs=67.2

Q ss_pred             HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHH----hCCcEEEEEcCC-CCHHHHHHhhcc---cceEEEEeeecCC
Q 029661           38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD----LGAKAGVVLNPA-TSLSAIECVLDV---VDLVLIMSVNPGF  109 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~----~g~~~g~~i~p~-t~~~~~~~~~~~---~d~i~~m~v~pG~  109 (190)
                      +....+++.|. .-.+|-..    ++++..+++++    .+..+.+++... ...++++.+++.   +|+|.+=+.| | 
T Consensus        60 ~mA~~la~~g~-~~~iHk~~----~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~Ah-G-  132 (343)
T TIGR01305        60 EMAAALSQHSI-FTAIHKHY----SVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVAN-G-  132 (343)
T ss_pred             HHHHHHHHCCC-eEEEeeCC----CHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCC-C-
Confidence            45556677662 33445432    13344444433    344444555433 235677777764   7888763333 2 


Q ss_pred             CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC-CcccHHHHHHcCCCEEEEc
Q 029661          110 GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAG  163 (190)
Q Consensus       110 ~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI-~~e~~~~~~~aGad~~VvG  163 (190)
                          .....++.|+++|+..+.    . ..+.|.| +++.+..++++|||++.||
T Consensus       133 ----hs~~~i~~ik~ir~~~p~----~-~viaGNV~T~e~a~~Li~aGAD~ikVg  178 (343)
T TIGR01305       133 ----YSEHFVEFVKLVREAFPE----H-TIMAGNVVTGEMVEELILSGADIVKVG  178 (343)
T ss_pred             ----cHHHHHHHHHHHHhhCCC----C-eEEEecccCHHHHHHHHHcCCCEEEEc
Confidence                234678888888887643    2 4466645 5899999999999999988

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=96.41  E-value=0.015  Score=49.18  Aligned_cols=127  Identities=20%  Similarity=0.259  Sum_probs=84.8

Q ss_pred             HHHHHHHHcC-CCEEEEcccCC----------CcchHHHHHHHHHHhCCcE-EEEEcCCCCHHHHHHhhc---c--cceE
Q 029661           38 QRVPDFIKAG-ADIVSVHCEQS----------STIHLHRTLNQIKDLGAKA-GVVLNPATSLSAIECVLD---V--VDLV  100 (190)
Q Consensus        38 ~~i~~~~~~G-ad~v~vh~e~~----------~~~~~~~~i~~i~~~g~~~-g~~i~p~t~~~~~~~~~~---~--~d~i  100 (190)
                      +|...+.+++ ||++.+-..+.          ..+.+..+++++|+.-..+ .+=+.|  ..+.+.++.+   .  +|-|
T Consensus       113 d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl  190 (310)
T COG0167         113 DYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAP--NITDIDEIAKAAEEAGADGL  190 (310)
T ss_pred             HHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCC--CHHHHHHHHHHHHHcCCcEE
Confidence            4566677888 89999954431          1235677888888865554 445888  3333333332   1  4655


Q ss_pred             EEEe-e------------------ecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661          101 LIMS-V------------------NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus       101 ~~m~-v------------------~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      .+-- +                  +-|.+|....|..++-++++++..+   .+++|.--|||. .+++.+.+.+||+.+
T Consensus       191 ~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~---~~ipIIGvGGI~s~~DA~E~i~aGA~~v  267 (310)
T COG0167         191 IAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLG---GDIPIIGVGGIETGEDALEFILAGASAV  267 (310)
T ss_pred             EEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcC---CCCcEEEecCcCcHHHHHHHHHcCCchh
Confidence            4211 0                  1244566666777777777776653   358898999999 688999999999999


Q ss_pred             EEcccccCC
Q 029661          161 VAGSAVFGA  169 (190)
Q Consensus       161 VvGsaI~~~  169 (190)
                      =+||+++..
T Consensus       268 Qv~Tal~~~  276 (310)
T COG0167         268 QVGTALIYK  276 (310)
T ss_pred             eeeeeeeee
Confidence            999998764

>PLN02389 biotin synthase

Probab=96.41  E-value=0.46  Score=41.36  Aligned_cols=141  Identities=17%  Similarity=0.183  Sum_probs=84.4

Q ss_pred             HHHHHHHHHcCCCEEEEcccCC-----------CcchHHHHHHHHHHhCCcE--EEEEcCCCCHHHHHH---hh---c-c
Q 029661           37 EQRVPDFIKAGADIVSVHCEQS-----------STIHLHRTLNQIKDLGAKA--GVVLNPATSLSAIEC---VL---D-V   96 (190)
Q Consensus        37 ~~~i~~~~~~Gad~v~vh~e~~-----------~~~~~~~~i~~i~~~g~~~--g~~i~p~t~~~~~~~---~~---~-~   96 (190)
                      .+.++.+.++|+|.+..-.|+.           +.++.-+.++.+++.|+++  |+.+......+....   .+   . .
T Consensus       178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~  257 (379)
T PLN02389        178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEH  257 (379)
T ss_pred             HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccC
Confidence            4567889999999988866631           0112346888889999998  555555443332111   11   1 2


Q ss_pred             cceEEEEeee--cCCC--Cc-ccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCC---CcccHHHHHHcCCCEEEEccc-c
Q 029661           97 VDLVLIMSVN--PGFG--GQ-SFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGV---GPKNAYKVIEAGANALVAGSA-V  166 (190)
Q Consensus        97 ~d~i~~m~v~--pG~~--gq-~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI---~~e~~~~~~~aGad~~VvGsa-I  166 (190)
                      +|.|-+....  ||+.  .. ... .+.++.+.-.|-++++.    .+-+.||=   ..+.-.....+|||.+.+|-+ +
T Consensus       258 ~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~----~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~L  333 (379)
T PLN02389        258 PESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKA----MVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLL  333 (379)
T ss_pred             CcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCc----cccccccccccChhHHHHHHHhCCCEEEECCccc
Confidence            4655544333  4642  11 112 24466666667666543    23345663   344457788999999999998 8


Q ss_pred             cCC-CCHHHHHHHHHH
Q 029661          167 FGA-KDYAEAIKGIKT  181 (190)
Q Consensus       167 ~~~-~dp~~~~~~l~~  181 (190)
                      +.. .++.+-.+-+++
T Consensus       334 tt~g~~~~~d~~~~~~  349 (379)
T PLN02389        334 TTPNNDFDADQAMFKE  349 (379)
T ss_pred             CCCCCChHHHHHHHHH
Confidence            754 566665555554

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=96.39  E-value=0.2  Score=41.82  Aligned_cols=146  Identities=12%  Similarity=0.174  Sum_probs=96.7

Q ss_pred             HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEE-----
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVL-----   81 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i-----   81 (190)
                      .++.+.+..++|+-+||==..-.+.+..+.++|.+.|-+=....+. ++   -.++++.++..|+.+    |-.=     
T Consensus        63 ~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~  142 (282)
T TIGR01858        63 LCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDD  142 (282)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCC
Confidence            4445555567899999854444567889999999999885443221 22   356778888888655    2220     


Q ss_pred             -------cCCCCHHHHHHhhcc--cceEEE--EeeecCCCCcccch-hhHHHHHHHHHHHhhcCCCCeEEEeCCCC--cc
Q 029661           82 -------NPATSLSAIECVLDV--VDLVLI--MSVNPGFGGQSFIE-SQVKKISDLRRMCLEKGVNPWIEVDGGVG--PK  147 (190)
Q Consensus        82 -------~p~t~~~~~~~~~~~--~d~i~~--m~v~pG~~gq~~~~-~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e  147 (190)
                             ..-|..+..+++.+.  +|.+.+  -++| |..  +..| -.+++|+++++..     ++++..=||-+  .+
T Consensus       143 ~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~H-G~y--k~~p~Ldf~~L~~I~~~~-----~iPLVlHGgSG~~~e  214 (282)
T TIGR01858       143 LSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAH-GLY--KKTPKLDFDRLAEIREVV-----DVPLVLHGASDVPDE  214 (282)
T ss_pred             CccccchhccCCHHHHHHHHHHHCcCEEecccCccc-cCc--CCCCccCHHHHHHHHHHh-----CCCeEEecCCCCCHH
Confidence                   113566777777753  787643  2333 211  1222 3377788887765     36888888766  58


Q ss_pred             cHHHHHHcCCCEEEEcccccC
Q 029661          148 NAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       148 ~~~~~~~aGad~~VvGsaI~~  168 (190)
                      +++++++.|..-+=++|.+..
T Consensus       215 ~~~~ai~~Gi~KiNi~T~l~~  235 (282)
T TIGR01858       215 DVRRTIELGICKVNVATELKI  235 (282)
T ss_pred             HHHHHHHcCCeEEEeCcHHHH
Confidence            999999999999999998864

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=96.38  E-value=0.082  Score=45.09  Aligned_cols=125  Identities=15%  Similarity=0.175  Sum_probs=74.2

Q ss_pred             CCCcEEEEEeecC-hHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh----CCcEEEEEcCC-CCHHHHHHhhc-
Q 029661           23 TDLPLDVHLMIVE-PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL----GAKAGVVLNPA-TSLSAIECVLD-   95 (190)
Q Consensus        23 ~~~~i~~hlmv~d-p~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~----g~~~g~~i~p~-t~~~~~~~~~~-   95 (190)
                      +++|+..-=|-.= -.+....+++.|. .-.+|-..    ++++..+++++.    +..+.+++... ...++++++++ 
T Consensus        45 ~giPii~AnMdTV~~~~mA~~la~~g~-~~~iHk~~----~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~  119 (346)
T PRK05096         45 SGVPIIAANMDTVGTFEMAKALASFDI-LTAVHKHY----SVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILAL  119 (346)
T ss_pred             cCCceEecCCCccccHHHHHHHHHCCC-eEEEecCC----CHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhc
Confidence            4566655333221 1344556777763 34445432    244444444442    33444454433 23567777776 


Q ss_pred             --ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEc
Q 029661           96 --VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG  163 (190)
Q Consensus        96 --~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvG  163 (190)
                        .+|+|.+=+.| |     .....++.|+++|+..++    ..| +.|.+- ++.+..++++|||++-||
T Consensus       120 ~~g~D~iviD~Ah-G-----hs~~~i~~ik~ik~~~P~----~~v-IaGNV~T~e~a~~Li~aGAD~vKVG  179 (346)
T PRK05096        120 SPALNFICIDVAN-G-----YSEHFVQFVAKAREAWPD----KTI-CAGNVVTGEMVEELILSGADIVKVG  179 (346)
T ss_pred             CCCCCEEEEECCC-C-----cHHHHHHHHHHHHHhCCC----CcE-EEecccCHHHHHHHHHcCCCEEEEc
Confidence              48988763333 2     334678888888887653    455 667665 899999999999999866

>TIGR02317 prpB methylisocitrate lyase

Probab=96.37  E-value=0.11  Score=43.43  Aligned_cols=141  Identities=18%  Similarity=0.202  Sum_probs=86.3

Q ss_pred             HHHHHHhccCCCCcEEEEEeec--ChHH---HHHHHHHcCCCEEEEcccC-------------CCcchHHHHHHHHHHhC
Q 029661           13 PLVVDALRPVTDLPLDVHLMIV--EPEQ---RVPDFIKAGADIVSVHCEQ-------------SSTIHLHRTLNQIKDLG   74 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~--dp~~---~i~~~~~~Gad~v~vh~e~-------------~~~~~~~~~i~~i~~~g   74 (190)
                      ...++.|...+++|+.+|.=+-  +|..   .++.+.++|+.++++---.             .+.++..+-|+++++.-
T Consensus        62 ~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~  141 (285)
T TIGR02317        62 AEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAK  141 (285)
T ss_pred             HHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhc
Confidence            4556667777889999998883  5654   4888999999998883210             01223344455555533


Q ss_pred             CcEEEEEcCCCC----------HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE---EE
Q 029661           75 AKAGVVLNPATS----------LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI---EV  140 (190)
Q Consensus        75 ~~~g~~i~p~t~----------~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i---~v  140 (190)
                      ...-+.|+--|+          +++.+.|.+ .+|.|.+    ||.       ...+.++++.+.++     .++   .+
T Consensus       142 ~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi----~g~-------~~~e~i~~~~~~i~-----~Pl~~n~~  205 (285)
T TIGR02317       142 RDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFP----EAL-------TSLEEFRQFAKAVK-----VPLLANMT  205 (285)
T ss_pred             cCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEe----CCC-------CCHHHHHHHHHhcC-----CCEEEEec
Confidence            233344443333          345555555 4888865    342       12444555555442     233   24


Q ss_pred             eCCCCc-ccHHHHHHcCCCEEEEcccccCC
Q 029661          141 DGGVGP-KNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       141 dGGI~~-e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .||-++ -+++++.+.|++.++.|...+.+
T Consensus       206 ~~~~~p~~s~~eL~~lGv~~v~~~~~~~~a  235 (285)
T TIGR02317       206 EFGKTPLFTADELREAGYKMVIYPVTAFRA  235 (285)
T ss_pred             cCCCCCCCCHHHHHHcCCcEEEEchHHHHH
Confidence            466665 48999999999999999887764

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=96.36  E-value=0.15  Score=42.70  Aligned_cols=147  Identities=12%  Similarity=0.174  Sum_probs=97.3

Q ss_pred             HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEE-----
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVL-----   81 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i-----   81 (190)
                      .++.+.+..++|+-+||==....+.+..+.++|.+.|-+=....+. ++   -.++++.++.+|+.+    |-.=     
T Consensus        65 ~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~  144 (286)
T PRK12738         65 LCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDD  144 (286)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCC
Confidence            3444555568999999955545567888999999999885443221 22   356778888877655    2220     


Q ss_pred             ---c----CCCCHHHHHHhhc--ccceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--ccc
Q 029661           82 ---N----PATSLSAIECVLD--VVDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKN  148 (190)
Q Consensus        82 ---~----p~t~~~~~~~~~~--~~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~  148 (190)
                         .    .-|..+..+++.+  .+|.+.+  -++| |...+ -..--+++++++++..     ++++..=||-.  .+.
T Consensus       145 ~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~H-G~Y~~-~p~Ldfd~l~~I~~~~-----~vPLVLHGgSG~~~e~  217 (286)
T PRK12738        145 MSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAH-GLYSK-TPKIDFQRLAEIREVV-----DVPLVLHGASDVPDEF  217 (286)
T ss_pred             cccccchhcCCCHHHHHHHHHHhCCCEEEeccCccc-CCCCC-CCcCCHHHHHHHHHHh-----CCCEEEeCCCCCCHHH
Confidence               1    1356677777775  3787643  2333 22111 1223378888888765     36888888766  589


Q ss_pred             HHHHHHcCCCEEEEcccccC
Q 029661          149 AYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       149 ~~~~~~aGad~~VvGsaI~~  168 (190)
                      ++++++.|..-+=++|.+..
T Consensus       218 ~~kai~~GI~KiNi~T~l~~  237 (286)
T PRK12738        218 VRRTIELGVTKVNVATELKI  237 (286)
T ss_pred             HHHHHHcCCeEEEeCcHHHH
Confidence            99999999999999998864

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

Probab=96.36  E-value=0.036  Score=48.21  Aligned_cols=115  Identities=17%  Similarity=0.219  Sum_probs=78.0

Q ss_pred             HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC----CCHHHHHHh----hc-ccceEEEEeeec
Q 029661           37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA----TSLSAIECV----LD-VVDLVLIMSVNP  107 (190)
Q Consensus        37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~----t~~~~~~~~----~~-~~d~i~~m~v~p  107 (190)
                      +.|++.+.+.|.|.+-+-.--.+..+++..++++|++|..+..+++-.    +.++.+.++    ++ .+|.|.+=    
T Consensus       101 e~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciK----  176 (472)
T COG5016         101 EKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIK----  176 (472)
T ss_pred             HHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEee----
Confidence            568888999999988775322235688999999999999997766533    334433332    22 26777541    


Q ss_pred             CCCCcccchhhHHHHHHHHHHHhhcCCCCeEE----EeCCCCcccHHHHHHcCCCEE
Q 029661          108 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIE----VDGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus       108 G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~----vdGGI~~e~~~~~~~aGad~~  160 (190)
                      .-+|-.-.....+.++.+|+.++     +++.    ..-|++.-+.-..++||||++
T Consensus       177 DmaGlltP~~ayelVk~iK~~~~-----~pv~lHtH~TsG~a~m~ylkAvEAGvD~i  228 (472)
T COG5016         177 DMAGLLTPYEAYELVKAIKKELP-----VPVELHTHATSGMAEMTYLKAVEAGVDGI  228 (472)
T ss_pred             cccccCChHHHHHHHHHHHHhcC-----CeeEEecccccchHHHHHHHHHHhCcchh
Confidence            22343334566888888888764     3444    567888777778899999987

>PLN02535 glycolate oxidase

Probab=96.35  E-value=0.049  Score=47.05  Aligned_cols=150  Identities=12%  Similarity=0.183  Sum_probs=85.7

Q ss_pred             CHHHHHHhccCCCCcEEEEEeec-Ch---HHHHHHHHHcCCCEEEEcccCC---------------C-cchH--------
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIV-EP---EQRVPDFIKAGADIVSVHCEQS---------------S-TIHL--------   63 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~-dp---~~~i~~~~~~Gad~v~vh~e~~---------------~-~~~~--------   63 (190)
                      +...++++.+.++-+.-..|.+. |.   ...++.+.++|+..+.+-.+..               + ..+.        
T Consensus       111 s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~  190 (364)
T PLN02535        111 ASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEV  190 (364)
T ss_pred             ccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCC
Confidence            33455666655455666666763 43   4578888999998887743320               0 0000        


Q ss_pred             ---------------------HHHHHHHHHh-CCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHH
Q 029661           64 ---------------------HRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVK  120 (190)
Q Consensus        64 ---------------------~~~i~~i~~~-g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~  120 (190)
                                           .+.++.+|+. +..+.+  .--.+.+..+...+ .+|.|.+-. + |.....+.+.+++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~Pviv--KgV~~~~dA~~a~~~GvD~I~vsn-~-GGr~~d~~~~t~~  266 (364)
T PLN02535        191 VSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILI--KGVLTREDAIKAVEVGVAGIIVSN-H-GARQLDYSPATIS  266 (364)
T ss_pred             CccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEE--ecCCCHHHHHHHHhcCCCEEEEeC-C-CcCCCCCChHHHH
Confidence                                 1234444443 222222  11123333444433 378776521 2 2111123455677


Q ss_pred             HHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661          121 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       121 ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      -+.++++...   .+++|.+||||+ ..++.+....|||.+.+|++.+.
T Consensus       267 ~L~ev~~av~---~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~  312 (364)
T PLN02535        267 VLEEVVQAVG---GRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIY  312 (364)
T ss_pred             HHHHHHHHHh---cCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHh
Confidence            7777766543   247899999999 57888999999999999998653

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=96.35  E-value=0.039  Score=47.64  Aligned_cols=109  Identities=19%  Similarity=0.297  Sum_probs=66.5

Q ss_pred             HHHHHHHhCCcEEEEEcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccc--hhhHHHHHHHHHHHhhcCCCCeEEEeC
Q 029661           66 TLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFI--ESQVKKISDLRRMCLEKGVNPWIEVDG  142 (190)
Q Consensus        66 ~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~--~~~~~ki~~~~~~~~~~~~~~~i~vdG  142 (190)
                      .++.+|+.=..+.+.=. -...+..+..++. +|.|.+ +-+   +|..+.  +.+++.+.++++..     +.+|.+||
T Consensus       227 ~i~~ir~~~~~pviiKg-V~~~eda~~a~~~G~d~I~V-Snh---GGrqld~~~~~~~~L~ei~~~~-----~~~vi~dG  296 (361)
T cd04736         227 DLRWLRDLWPHKLLVKG-IVTAEDAKRCIELGADGVIL-SNH---GGRQLDDAIAPIEALAEIVAAT-----YKPVLIDS  296 (361)
T ss_pred             HHHHHHHhCCCCEEEec-CCCHHHHHHHHHCCcCEEEE-CCC---CcCCCcCCccHHHHHHHHHHHh-----CCeEEEeC
Confidence            56667664222222222 2445555555543 888765 222   333333  44567777776643     26799999


Q ss_pred             CCC-cccHHHHHHcCCCEEEEcccccC---C---CCHHHHHHHHHHhhc
Q 029661          143 GVG-PKNAYKVIEAGANALVAGSAVFG---A---KDYAEAIKGIKTSKR  184 (190)
Q Consensus       143 GI~-~e~~~~~~~aGad~~VvGsaI~~---~---~dp~~~~~~l~~~~~  184 (190)
                      ||+ ..++.+....|||.+.+|+++..   +   +.....++.|++.++
T Consensus       297 GIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~el~  345 (361)
T cd04736         297 GIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEID  345 (361)
T ss_pred             CCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            999 57888889999999999998662   1   234455555555443

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=96.34  E-value=0.19  Score=41.80  Aligned_cols=148  Identities=16%  Similarity=0.166  Sum_probs=95.7

Q ss_pred             HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEEc----
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVLN----   82 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i~----   82 (190)
                      .++.+.+...+|+-+||==....+.+..+.++|.+.|-+=....+. ++   -.++++.++..|+.+    |-.-.    
T Consensus        60 ~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~  139 (276)
T cd00947          60 MVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDG  139 (276)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCC
Confidence            4444444467899999855433456778899999999886543221 22   356777788887665    32211    


Q ss_pred             ------CCCCHHHHHHhhcc--cceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--cccHH
Q 029661           83 ------PATSLSAIECVLDV--VDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAY  150 (190)
Q Consensus        83 ------p~t~~~~~~~~~~~--~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~~~  150 (190)
                            .-|..+..+++.+.  +|.+.+  -++| |.....-..--+++++++++..     ++++..=||-.  .+.++
T Consensus       140 ~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~H-G~Y~~~~p~L~~~~L~~i~~~~-----~vPLVlHGgSG~~~e~~~  213 (276)
T cd00947         140 VVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSH-GAYKGGEPKLDFDRLKEIAERV-----NVPLVLHGGSGIPDEQIR  213 (276)
T ss_pred             cccccccCCCHHHHHHHHHHHCCCEEEeccCccc-cccCCCCCccCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHH
Confidence                  12556777777764  787642  2333 2111101223477788888776     36788888766  58899


Q ss_pred             HHHHcCCCEEEEcccccC
Q 029661          151 KVIEAGANALVAGSAVFG  168 (190)
Q Consensus       151 ~~~~aGad~~VvGsaI~~  168 (190)
                      ++++.|+.-+=++|.+..
T Consensus       214 ~ai~~Gi~KiNi~T~l~~  231 (276)
T cd00947         214 KAIKLGVCKININTDLRL  231 (276)
T ss_pred             HHHHcCCeEEEeChHHHH
Confidence            999999999999998764

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>PRK08662 nicotinate phosphoribosyltransferase; Reviewed

Probab=96.34  E-value=0.062  Score=46.09  Aligned_cols=100  Identities=12%  Similarity=0.121  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHh---CCcEEEEEcCC-CCHHHHHHhhc----ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcC-
Q 029661           63 LHRTLNQIKDL---GAKAGVVLNPA-TSLSAIECVLD----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG-  133 (190)
Q Consensus        63 ~~~~i~~i~~~---g~~~g~~i~p~-t~~~~~~~~~~----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~-  133 (190)
                      ..+.++.+++.   ..++.+-+... +.++...+..+    .+|.|.+=+..|.. |  -.++.   ++++|+.+++.+ 
T Consensus       186 ~~~A~~~~~~~~p~~~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~~~-g--~l~~~---v~~vr~~ld~~g~  259 (343)
T PRK08662        186 QVEAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSSRR-G--NFRKI---VREVRWTLDIRGY  259 (343)
T ss_pred             HHHHHHHHHHHCCCCCCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCCCC-c--cHHHH---HHHHHHHHHhcCC
Confidence            45567777764   23444444432 34433333322    36776652221100 1  11223   334444444443 


Q ss_pred             CCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661          134 VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       134 ~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .+..|++.||||++|+.++.+. +|++-+||.++++
T Consensus       260 ~~v~IeaSGgI~~~ni~~ya~~-vD~isvGs~~~~a  294 (343)
T PRK08662        260 EHVKIFVSGGLDPERIRELRDV-VDGFGVGTYISFA  294 (343)
T ss_pred             CCeEEEEeCCCCHHHHHHHHHh-CCEEEcCccccCC
Confidence            3478999999999999999999 9999999999874

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.33  E-value=0.066  Score=46.88  Aligned_cols=79  Identities=19%  Similarity=0.301  Sum_probs=53.1

Q ss_pred             CcEEEEEcCCCC-HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHH
Q 029661           75 AKAGVVLNPATS-LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV  152 (190)
Q Consensus        75 ~~~g~~i~p~t~-~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~  152 (190)
                      ..+|.++.+... .++++.+++ .+|+|.+=+.+    |.  .....+.++++|+.++    +..+.+.+-.|.+....+
T Consensus       142 l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~----g~--~~~~~~~v~~ik~~~p----~~~vi~g~V~T~e~a~~l  211 (404)
T PRK06843        142 LRVGAAVSIDIDTIERVEELVKAHVDILVIDSAH----GH--STRIIELVKKIKTKYP----NLDLIAGNIVTKEAALDL  211 (404)
T ss_pred             eEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCC----CC--ChhHHHHHHHHHhhCC----CCcEEEEecCCHHHHHHH
Confidence            346677765322 356666665 48998764443    21  2345666777777654    345655666668999999


Q ss_pred             HHcCCCEEEEc
Q 029661          153 IEAGANALVAG  163 (190)
Q Consensus       153 ~~aGad~~VvG  163 (190)
                      .++|||++.+|
T Consensus       212 ~~aGaD~I~vG  222 (404)
T PRK06843        212 ISVGADCLKVG  222 (404)
T ss_pred             HHcCCCEEEEC
Confidence            99999999988

>PRK15452 putative protease; Provisional

Probab=96.33  E-value=0.035  Score=49.22  Aligned_cols=116  Identities=17%  Similarity=0.100  Sum_probs=74.2

Q ss_pred             eecChHHHHHHHHHcCCCEEEEcccCC---------CcchHHHHHHHHHHhCCcEEEEEcCCCCH---HHHHHhhcc---
Q 029661           32 MIVEPEQRVPDFIKAGADIVSVHCEQS---------STIHLHRTLNQIKDLGAKAGVVLNPATSL---SAIECVLDV---   96 (190)
Q Consensus        32 mv~dp~~~i~~~~~~Gad~v~vh~e~~---------~~~~~~~~i~~i~~~g~~~g~~i~p~t~~---~~~~~~~~~---   96 (190)
                      .+.+++ -++.+.++|||.|.+..+..         +.+++.+.++.++++|+++.+++|.-..-   +.+.++++.   
T Consensus         9 pag~~e-~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~   87 (443)
T PRK15452          9 PAGTLK-NMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIA   87 (443)
T ss_pred             ECCCHH-HHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHh
Confidence            344544 35578899999999954311         23568889999999999999998844333   333333332   


Q ss_pred             --cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc---ccHHHHHHcCCCEEEEcccc
Q 029661           97 --VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP---KNAYKVIEAGANALVAGSAV  166 (190)
Q Consensus        97 --~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~---e~~~~~~~aGad~~VvGsaI  166 (190)
                        +|-|++  .+|            .-+..+++..    ++.++.+|-..|.   ..+.-+.+.|++-+++.+-+
T Consensus        88 ~gvDgvIV--~d~------------G~l~~~ke~~----p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL  144 (443)
T PRK15452         88 MKPDALIM--SDP------------GLIMMVREHF----PEMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL  144 (443)
T ss_pred             CCCCEEEE--cCH------------HHHHHHHHhC----CCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence              344443  112            2234444432    3467778887764   45666788999999988766

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=96.31  E-value=0.11  Score=42.86  Aligned_cols=113  Identities=22%  Similarity=0.186  Sum_probs=73.7

Q ss_pred             HHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHhCCcEEEEEc--CCCCHHHHHHhhcc-----c
Q 029661           39 RVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----V   97 (190)
Q Consensus        39 ~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~g~~~g~~i~--p~t~~~~~~~~~~~-----~   97 (190)
                      -++.+.++|++.|.+..-..              ..+...+.++.+|++|.++.+.+.  ..+|.+.+.++.+.     +
T Consensus        76 di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~  155 (262)
T cd07948          76 DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGV  155 (262)
T ss_pred             HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCC
Confidence            57889999999988843110              123355667888899999877653  34566666655432     5


Q ss_pred             ceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661           98 DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        98 d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~  160 (190)
                      |.+.+    +.+.|...+..+.+.++.+++..+     .+|.+    +-|....|.-..+++|++.+
T Consensus       156 ~~i~l----~Dt~G~~~P~~v~~~~~~~~~~~~-----~~i~~H~Hn~~Gla~an~~~a~~aG~~~v  213 (262)
T cd07948         156 NRVGI----ADTVGIATPRQVYELVRTLRGVVS-----CDIEFHGHNDTGCAIANAYAALEAGATHI  213 (262)
T ss_pred             CEEEE----CCcCCCCCHHHHHHHHHHHHHhcC-----CeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence            65543    445566666667777777776542     44554    45666667778889999964

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=96.30  E-value=0.078  Score=45.04  Aligned_cols=126  Identities=16%  Similarity=0.206  Sum_probs=72.8

Q ss_pred             CCcEEEEEeecChH-HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC-HHHHHHhhcc---cc
Q 029661           24 DLPLDVHLMIVEPE-QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-LSAIECVLDV---VD   98 (190)
Q Consensus        24 ~~~i~~hlmv~dp~-~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-~~~~~~~~~~---~d   98 (190)
                      +.||.+-=|..... +....+.+.|.-.+. |-.  +.++..+.++..+..+..+++++..... .+++.++.+.   +|
T Consensus        34 ~~P~~inAM~t~in~~LA~~a~~~G~~~i~-hK~--~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d  110 (321)
T TIGR01306        34 KLPVVPANMQTIIDEKLAEQLAENGYFYIM-HRF--DEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPE  110 (321)
T ss_pred             cCcEEeeccchhhhHHHHHHHHHcCCEEEE-ecC--CHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCC
Confidence            34555555544332 345567777744443 332  2344444444444445544444443222 3556666553   47


Q ss_pred             eEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEc
Q 029661           99 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG  163 (190)
Q Consensus        99 ~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvG  163 (190)
                      +|.+   ++.- |  -....++.|+++|+..+     .+..+.|++. .+.++.+.++|||.+.+|
T Consensus       111 ~i~~---D~ah-g--~s~~~~~~i~~i~~~~p-----~~~vi~GnV~t~e~a~~l~~aGad~I~V~  165 (321)
T TIGR01306       111 YITI---DIAH-G--HSNSVINMIKHIKTHLP-----DSFVIAGNVGTPEAVRELENAGADATKVG  165 (321)
T ss_pred             EEEE---eCcc-C--chHHHHHHHHHHHHhCC-----CCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence            7754   4321 2  23457888888888653     2455777666 799999999999999887

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional

Probab=96.30  E-value=0.16  Score=41.76  Aligned_cols=138  Identities=14%  Similarity=0.141  Sum_probs=82.5

Q ss_pred             CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHH--------------------------HhCCc
Q 029661           23 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK--------------------------DLGAK   76 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~--------------------------~~g~~   76 (190)
                      .+..-.+.+-..+|. ++..+.++|+++|.++.-. +.++..++++.+|                          ..+-.
T Consensus        68 ~g~~~lVRvp~~~~~-~i~r~LD~Ga~giivP~v~-tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~  145 (256)
T PRK10558         68 SASAPVVRVPTNEPV-IIKRLLDIGFYNFLIPFVE-TAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKN  145 (256)
T ss_pred             cCCCcEEECCCCCHH-HHHHHhCCCCCeeeecCcC-CHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccc
Confidence            445555544334443 6788999999999997443 2455555544332                          22223


Q ss_pred             EEEEEcCCCC--HHHHHHhhc--ccceEEEEe----eecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCccc
Q 029661           77 AGVVLNPATS--LSAIECVLD--VVDLVLIMS----VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN  148 (190)
Q Consensus        77 ~g~~i~p~t~--~~~~~~~~~--~~d~i~~m~----v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~  148 (190)
                      +.+...-+|+  ++.+++++.  .+|.+.+-+    ..-|..++...++....+.++..-..++|..  ..+ ..-+++.
T Consensus       146 ~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~--~g~-~~~~~~~  222 (256)
T PRK10558        146 ITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKP--SGI-LAPVEAD  222 (256)
T ss_pred             cEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCc--eEE-cCCCHHH
Confidence            3333333455  566777764  367776632    2234444444566666677766666665533  222 3445788


Q ss_pred             HHHHHHcCCCEEEEccc
Q 029661          149 AYKVIEAGANALVAGSA  165 (190)
Q Consensus       149 ~~~~~~aGad~~VvGsa  165 (190)
                      .+.+++.|++.+++|+-
T Consensus       223 ~~~~~~~G~~~v~~~~D  239 (256)
T PRK10558        223 ARRYLEWGATFVAVGSD  239 (256)
T ss_pred             HHHHHHcCCCEEEEchH
Confidence            99999999999999964

>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional

Probab=96.30  E-value=0.13  Score=45.57  Aligned_cols=146  Identities=18%  Similarity=0.151  Sum_probs=86.0

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHh
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV   93 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~   93 (190)
                      +.|+.+++.++.|+.++  +.||+ .++.+.++|+|..-.-... ..++..+..+.++++|..+.+ ..++  ++.+++.
T Consensus       145 ~~Vk~V~~~~dvPLSID--T~dpe-vleaAleagad~~plI~Sa-t~dN~~~m~~la~~yg~pvVv-~~~d--l~~L~~l  217 (450)
T PRK04165        145 KAVKKVAETTDLPLILC--SEDPA-VLKAALEVVADRKPLLYAA-TKENYEEMAELAKEYNCPLVV-KAPN--LEELKEL  217 (450)
T ss_pred             HHHHHHHHhcCCCEEEe--CCCHH-HHHHHHHhcCCCCceEEec-CcchHHHHHHHHHHcCCcEEE-Echh--HHHHHHH
Confidence            45666666568888774  57777 4567788888843333222 135678888989999988766 3332  5555554


Q ss_pred             hcc------cceEEEEeeecCCCCcccchhhHHHHHHHHHH---HhhcCCCCeEEEeCC------CCcc--cHHHHHHcC
Q 029661           94 LDV------VDLVLIMSVNPGFGGQSFIESQVKKISDLRRM---CLEKGVNPWIEVDGG------VGPK--NAYKVIEAG  156 (190)
Q Consensus        94 ~~~------~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~---~~~~~~~~~i~vdGG------I~~e--~~~~~~~aG  156 (190)
                      .+.      .|.|    .+||++|  |. .+++...++|+.   -..+.+.+++-+.-+      +-.|  ++.-++..|
T Consensus       218 v~~~~~~GI~dII----LDPg~gg--f~-ksl~~~~~iRr~Al~~~~~~lgyPil~~~s~k~~~~~~~E~~~As~~~~ky  290 (450)
T PRK04165        218 VEKLQAAGIKDLV----LDPGTEN--IK-ETLDDFVQIRRAAIKKGDRPLGYPIIAFPIEAWMSDPMKEAAIASTLIAKY  290 (450)
T ss_pred             HHHHHHcCCCcEE----ECCCCch--hh-hhHHHHHHHHhhhhhcccccCCCCEEEcchhhcccchHHHHHHHHHHHHhC
Confidence            432      2444    3898865  32 334555666665   222335566644322      1112  455677889


Q ss_pred             CCEEEEcccccCCCCHHHHHHH
Q 029661          157 ANALVAGSAVFGAKDYAEAIKG  178 (190)
Q Consensus       157 ad~~VvGsaI~~~~dp~~~~~~  178 (190)
                      ||++|+-+     -+|.+.+-.
T Consensus       291 a~i~Vl~~-----~~~~~~~p~  307 (450)
T PRK04165        291 ADILVLHD-----IEPWELLPL  307 (450)
T ss_pred             CcEEEEcC-----CCHHHHhhH
Confidence            99998764     455555443

>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase

Probab=96.29  E-value=0.047  Score=49.90  Aligned_cols=122  Identities=11%  Similarity=0.123  Sum_probs=87.3

Q ss_pred             HHHHHcCCCEEEEcccCCCcchHHHHHHHHHH-------------hCCcEEEEEcCCCCHHHHHHhhcccceEEEEe---
Q 029661           41 PDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-------------LGAKAGVVLNPATSLSAIECVLDVVDLVLIMS---  104 (190)
Q Consensus        41 ~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~-------------~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~---  104 (190)
                      ..+.+.|+..|.|+.-. +.+++.++.+.++.             ....+|+.+....-+..+.++++.+|.+.+-+   
T Consensus       377 ~ra~~~G~~~Im~PmV~-t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~vDf~sIGtnDL  455 (565)
T TIGR01417       377 LRASAYGKLRIMFPMVA-TVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEVDFFSIGTNDL  455 (565)
T ss_pred             HHHHhcCCCeEEecCCC-CHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhhCCEEEEChhHH
Confidence            34567899999998765 35566666665553             13557777765555677888888899987632   


Q ss_pred             ------ee-----cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC--CCcccHHHHHHcCCCEEEEccc
Q 029661          105 ------VN-----PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSA  165 (190)
Q Consensus       105 ------v~-----pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG--I~~e~~~~~~~aGad~~VvGsa  165 (190)
                            +.     .|..+|.+.|..+..|+++.+-..+++  .++.+-|.  -+++.++.++..|.+.+.+++.
T Consensus       456 sqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g--~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~~  527 (565)
T TIGR01417       456 TQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEG--IWVGMCGEMAGDERAIPLLLGLGLRELSMSAS  527 (565)
T ss_pred             HHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcC--CeEEEeCCcCCCHHHHHHHHHCCCCEEEEChH
Confidence                  22     455578888999998888887776554  56666553  4588889999999999999964

This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=96.27  E-value=0.27  Score=41.08  Aligned_cols=147  Identities=14%  Similarity=0.195  Sum_probs=96.4

Q ss_pred             HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEE-----
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVL-----   81 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i-----   81 (190)
                      .++++.+..++|+-+||==..-.+++..+.++|.+.|-+=....+. ++   -.++++.++..|+.+    |-.=     
T Consensus        65 ~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~  144 (284)
T PRK09195         65 IVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDD  144 (284)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccC
Confidence            4555555578999999855444567889999999999885443221 22   356777888887554    2210     


Q ss_pred             ---c----CCCCHHHHHHhhc--ccceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--ccc
Q 029661           82 ---N----PATSLSAIECVLD--VVDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKN  148 (190)
Q Consensus        82 ---~----p~t~~~~~~~~~~--~~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~  148 (190)
                         .    .-|..+..+++.+  .+|.+.+  -++|--+.+.  ..-.+++++++++..     ++++..=||-.  .+.
T Consensus       145 ~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~--p~Ld~~~L~~I~~~~-----~vPLVLHGgSG~~~e~  217 (284)
T PRK09195        145 LQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGE--PKLDFDRLENIRQWV-----NIPLVLHGASGLPTKD  217 (284)
T ss_pred             cccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCC--CcCCHHHHHHHHHHh-----CCCeEEecCCCCCHHH
Confidence               0    1366677778775  4787643  2333111121  123377777777765     36788888765  589


Q ss_pred             HHHHHHcCCCEEEEcccccC
Q 029661          149 AYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       149 ~~~~~~aGad~~VvGsaI~~  168 (190)
                      ++++++.|..-+=++|.+..
T Consensus       218 ~~~ai~~Gi~KiNi~T~l~~  237 (284)
T PRK09195        218 IQQTIKLGICKVNVATELKI  237 (284)
T ss_pred             HHHHHHcCCeEEEeCcHHHH
Confidence            99999999999999998863

>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD

Probab=96.26  E-value=0.06  Score=44.57  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=33.3

Q ss_pred             CCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661          134 VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       134 ~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .+..|.+.||||+++++.+.+.|+|++.+|+.+++.
T Consensus       238 ~~~~i~~Sggi~~~~i~~~~~~gvd~~gvG~~~~~~  273 (281)
T cd00516         238 PRVKIEASGGLDEENIRAYAETGVDVFGVGTLLHSA  273 (281)
T ss_pred             CceEEEEeCCCCHHHHHHHHHcCCCEEEeCcccccC
Confidence            356899999999999999999999999999999886

QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.

>PRK12999 pyruvate carboxylase; Reviewed

Probab=96.25  E-value=0.062  Score=52.95  Aligned_cols=140  Identities=15%  Similarity=0.170  Sum_probs=90.8

Q ss_pred             HHHHHhccC-CCCcEEEEEeecC-------h----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVE-------P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL   81 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~d-------p----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i   81 (190)
                      +.++.+|+. ++.++-..+--.|       |    ..|++.+.++|.|++.+-......+++...++.+|+.|...-+++
T Consensus       595 erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i  674 (1146)
T PRK12999        595 ERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAI  674 (1146)
T ss_pred             HHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEE
Confidence            567888875 7777766554322       2    457888999999998875332124567888999999997655555


Q ss_pred             cCC----------CCHHHHHHhh----c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eC
Q 029661           82 NPA----------TSLSAIECVL----D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DG  142 (190)
Q Consensus        82 ~p~----------t~~~~~~~~~----~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dG  142 (190)
                      +..          .+.+.+.++.    + .+|.|.+    ....|...+..+.+.++.+|+.+     +.+|.+    +-
T Consensus       675 ~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~i----kDt~G~l~P~~~~~lv~~lk~~~-----~ipi~~H~Hnt~  745 (1146)
T PRK12999        675 CYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAI----KDMAGLLKPAAAYELVSALKEEV-----DLPIHLHTHDTS  745 (1146)
T ss_pred             EEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEE----CCccCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCCCC
Confidence            433          2344333332    2 2565543    34456666667777788888764     245554    55


Q ss_pred             CCCcccHHHHHHcCCCEEEE
Q 029661          143 GVGPKNAYKVIEAGANALVA  162 (190)
Q Consensus       143 GI~~e~~~~~~~aGad~~Vv  162 (190)
                      |....|.-..+++|||++=+
T Consensus       746 Gla~an~laA~~aGad~vD~  765 (1146)
T PRK12999        746 GNGLATYLAAAEAGVDIVDV  765 (1146)
T ss_pred             chHHHHHHHHHHhCCCEEEe
Confidence            66666787889999997743

>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []

Probab=96.23  E-value=0.15  Score=43.53  Aligned_cols=130  Identities=21%  Similarity=0.289  Sum_probs=75.7

Q ss_pred             HHHHcCCCEEEEcccCC--------------------Ccc----hHHHHHHHHHHh---CCcEEEEEcCCCCH------H
Q 029661           42 DFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL---GAKAGVVLNPATSL------S   88 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e~~--------------------~~~----~~~~~i~~i~~~---g~~~g~~i~p~t~~------~   88 (190)
                      .+.++|.|+|-+|+-.+                    +.+    =+.++++++|+.   ...+|+=+++....      +
T Consensus       157 ~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~  236 (341)
T PF00724_consen  157 RAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLE  236 (341)
T ss_dssp             HHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSH
T ss_pred             HHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchH
Confidence            36889999999996432                    111    156788888885   34478888876542      2


Q ss_pred             HH---HHhhcc--cceEEEE------eeecCCC-Ccccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661           89 AI---ECVLDV--VDLVLIM------SVNPGFG-GQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE  154 (190)
Q Consensus        89 ~~---~~~~~~--~d~i~~m------~v~pG~~-gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~  154 (190)
                      ..   .+.++.  +|++.+.      ...|... ..... ...+...+.+|+..     +.++...||++ ++.+.++++
T Consensus       237 e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~-----~~pvi~~G~i~~~~~ae~~l~  311 (341)
T PF00724_consen  237 ETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV-----KIPVIGVGGIRTPEQAEKALE  311 (341)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH-----SSEEEEESSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc-----CceEEEEeeecchhhhHHHHh
Confidence            22   222222  4554221      1122211 11111 12234455666654     35788999999 565777777


Q ss_pred             cC-CCEEEEcccccCCCCHHHHH
Q 029661          155 AG-ANALVAGSAVFGAKDYAEAI  176 (190)
Q Consensus       155 aG-ad~~VvGsaI~~~~dp~~~~  176 (190)
                      .| +|.+.+|+++...+|.-..+
T Consensus       312 ~g~~DlV~~gR~~ladPd~~~k~  334 (341)
T PF00724_consen  312 EGKADLVAMGRPLLADPDLPNKA  334 (341)
T ss_dssp             TTSTSEEEESHHHHH-TTHHHHH
T ss_pred             cCCceEeeccHHHHhCchHHHHH
Confidence            66 99999999988877765443

It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=96.21  E-value=0.3  Score=40.93  Aligned_cols=147  Identities=16%  Similarity=0.213  Sum_probs=98.3

Q ss_pred             HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcEEEEEc--------
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKAGVVLN--------   82 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~g~~i~--------   82 (190)
                      .++.+.+..++|+-+||==....+.+..+.++|.+.|-+=....+. ++   -.++++.++.+|+.+---+.        
T Consensus        64 ~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~  143 (287)
T PF01116_consen   64 MVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDG  143 (287)
T ss_dssp             HHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTT
T ss_pred             HHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCC
Confidence            4556666678999999965555667889999999999986543221 22   35677888888876633211        


Q ss_pred             --C-------CCCHHHHHHhhcc--cceEEEEeeecCCC-Cc-cc--chh-hHHHHHHHHHHHhhcCCCCeEEEeCCCC-
Q 029661           83 --P-------ATSLSAIECVLDV--VDLVLIMSVNPGFG-GQ-SF--IES-QVKKISDLRRMCLEKGVNPWIEVDGGVG-  145 (190)
Q Consensus        83 --p-------~t~~~~~~~~~~~--~d~i~~m~v~pG~~-gq-~~--~~~-~~~ki~~~~~~~~~~~~~~~i~vdGGI~-  145 (190)
                        .       -|..+..+++.+.  +|.+.+   -.|.. |. +.  .|. -+++++++++..+    ++++..=||-+ 
T Consensus       144 ~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAv---aiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~----~iPLVlHGgSG~  216 (287)
T PF01116_consen  144 IESEEETESLYTDPEEAKEFVEETGVDALAV---AIGTAHGMYKGGKKPKLDFDRLKEIREAVP----DIPLVLHGGSGL  216 (287)
T ss_dssp             CSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE----SSSBSSSBSSSSSTC--HHHHHHHHHHHH----TSEEEESSCTTS
T ss_pred             ccccccccccccCHHHHHHHHHHhCCCEEEE---ecCccccccCCCCCcccCHHHHHHHHHhcC----CCCEEEECCCCC
Confidence              1       1566777777654  788643   33321 21 12  233 4888888888874    37899989877 


Q ss_pred             -cccHHHHHHcCCCEEEEcccccC
Q 029661          146 -PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       146 -~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                       .++++++++.|..-+=+||.+..
T Consensus       217 ~~e~~~~ai~~Gi~KiNi~T~~~~  240 (287)
T PF01116_consen  217 PDEQIRKAIKNGISKINIGTELRR  240 (287)
T ss_dssp             -HHHHHHHHHTTEEEEEESHHHHH
T ss_pred             CHHHHHHHHHcCceEEEEehHHHH
Confidence             58999999999999999998764

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=96.20  E-value=0.52  Score=38.20  Aligned_cols=140  Identities=21%  Similarity=0.212  Sum_probs=77.6

Q ss_pred             HHHHHHHHcCCCEEEEcccCCCc------chHHHHHHHHHHhC--CcEEEEEcCCCCHHHHHHhhcc-cceEEEEeeecC
Q 029661           38 QRVPDFIKAGADIVSVHCEQSST------IHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPG  108 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~~~------~~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG  108 (190)
                      ++++.+.++|++.|-+-.-. +.      ++..+.++.+++.+  .++.. +.++. .+.++...+. +|.|.+..  ++
T Consensus        23 ~i~~~L~~~GV~~IEvg~~~-~~~~~p~~~~~~~~i~~l~~~~~~~~~~~-l~~~~-~~~i~~a~~~g~~~i~i~~--~~   97 (265)
T cd03174          23 EIAEALDEAGVDSIEVGSGA-SPKAVPQMEDDWEVLRAIRKLVPNVKLQA-LVRNR-EKGIERALEAGVDEVRIFD--SA   97 (265)
T ss_pred             HHHHHHHHcCCCEEEeccCc-CccccccCCCHHHHHHHHHhccCCcEEEE-EccCc-hhhHHHHHhCCcCEEEEEE--ec
Confidence            46777888999999886443 23      56788999999987  44433 33221 4445554443 56665422  12


Q ss_pred             CCC---c---ccchhhHHHHHHHHHHHhhcCCCCeEEE--eCC--CCcc----cHHHHHHcCCCEEEEcccccCCCCHH-
Q 029661          109 FGG---Q---SFIESQVKKISDLRRMCLEKGVNPWIEV--DGG--VGPK----NAYKVIEAGANALVAGSAVFGAKDYA-  173 (190)
Q Consensus       109 ~~g---q---~~~~~~~~ki~~~~~~~~~~~~~~~i~v--dGG--I~~e----~~~~~~~aGad~~VvGsaI~~~~dp~-  173 (190)
                      ...   .   .-.+..++++.+..+...+.+..+.+.+  ..+  .+++    -++.+.++|+|.+.+--. +..-.|. 
T Consensus        98 s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~  176 (265)
T cd03174          98 SETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT-VGLATPEE  176 (265)
T ss_pred             CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh-cCCcCHHH
Confidence            110   0   1122345666555555556665554444  344  5543    455677899999887522 2223444 


Q ss_pred             --HHHHHHHHhh
Q 029661          174 --EAIKGIKTSK  183 (190)
Q Consensus       174 --~~~~~l~~~~  183 (190)
                        +.++.+++..
T Consensus       177 v~~li~~l~~~~  188 (265)
T cd03174         177 VAELVKALREAL  188 (265)
T ss_pred             HHHHHHHHHHhC
Confidence              4445555443

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=96.18  E-value=0.16  Score=43.45  Aligned_cols=141  Identities=13%  Similarity=0.163  Sum_probs=92.7

Q ss_pred             CCcEEEEEeecChHHHHHHH--HHcCCCEEEEcccC----------C-----CcchHHHHHHHHHHh-CCcEEEEEcCCC
Q 029661           24 DLPLDVHLMIVEPEQRVPDF--IKAGADIVSVHCEQ----------S-----STIHLHRTLNQIKDL-GAKAGVVLNPAT   85 (190)
Q Consensus        24 ~~~i~~hlmv~dp~~~i~~~--~~~Gad~v~vh~e~----------~-----~~~~~~~~i~~i~~~-g~~~g~~i~p~t   85 (190)
                      +.|+.+.+=.+||+.+.+.+  .+.-+|+|-+-.-.          |     ..+=+.++++.++.. +..+-+=|.-..
T Consensus        73 D~PLIvQf~~ndp~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~  152 (358)
T KOG2335|consen   73 DRPLIVQFGGNDPENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFV  152 (358)
T ss_pred             CCceEEEEcCCCHHHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecC
Confidence            67999999999998876543  33334777663211          0     012255677776663 444433233222


Q ss_pred             CH----HHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH-cCCC
Q 029661           86 SL----SAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE-AGAN  158 (190)
Q Consensus        86 ~~----~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~-aGad  158 (190)
                      +.    +.++.+. ..++.+.+.+..+-..|.+..|..++.|+.+|+-.++    +++-+-|+|. .+.+..+.+ .|||
T Consensus       153 d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~----ipviaNGnI~~~~d~~~~~~~tG~d  228 (358)
T KOG2335|consen  153 DLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD----IPVIANGNILSLEDVERCLKYTGAD  228 (358)
T ss_pred             cHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC----CcEEeeCCcCcHHHHHHHHHHhCCc
Confidence            33    3333221 1367887777766656666678889999988887653    7899999999 678887777 9999


Q ss_pred             EEEEcccccC
Q 029661          159 ALVAGSAVFG  168 (190)
Q Consensus       159 ~~VvGsaI~~  168 (190)
                      ++-+|+++..
T Consensus       229 GVM~arglL~  238 (358)
T KOG2335|consen  229 GVMSARGLLY  238 (358)
T ss_pred             eEEecchhhc
Confidence            9999987554

>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]

Probab=96.17  E-value=0.45  Score=38.41  Aligned_cols=137  Identities=20%  Similarity=0.248  Sum_probs=75.7

Q ss_pred             EEEEEeecCh-HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHH-HHHhC--CcEEEEEcC-------CCCHHHHHHhhc
Q 029661           27 LDVHLMIVEP-EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQ-IKDLG--AKAGVVLNP-------ATSLSAIECVLD   95 (190)
Q Consensus        27 i~~hlmv~dp-~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~-i~~~g--~~~g~~i~p-------~t~~~~~~~~~~   95 (190)
                      +.-|| +-.. .+-++.+.+ -+|++  |.-.  ...+...++. +.+.+  .++-+=+|.       .++.+.+.++++
T Consensus        74 i~WHf-IG~LQsNK~k~v~~-~~~~i--hSlD--r~klA~~l~kra~~~~~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~  147 (228)
T COG0325          74 IEWHF-IGPLQSNKVKLVAE-NFDWI--HSLD--RLKLAKELNKRALELPKPLNVLIQVNISGEESKSGVPPEELDELAQ  147 (228)
T ss_pred             eEEEE-echhhhhHHHHHHh-hccee--eecC--HHHHHHHHHHHHHhCCCCceEEEEEecCCccccCCCCHHHHHHHHH
Confidence            55565 2221 223444444 34544  4332  2233333333 34444  555555553       234555555543


Q ss_pred             c------cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661           96 V------VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus        96 ~------~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .      ..+.-+|++.|=.....-.-..+.+++++++-+.+.+.++ -...=|.| ...+..++.||..+=+||+||++
T Consensus       148 ~~~~~~~L~l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~~-~~LSMGMS-~D~e~AI~~GaT~VRIGtaiFg~  225 (228)
T COG0325         148 EVQELPNLELRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAKYPPI-DELSMGMS-NDYEIAIAEGATMVRIGTAIFGA  225 (228)
T ss_pred             HHHhCCCCeEeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC-CeecCcCc-ccHHHHHHcCCCEEEEcHHhhCC
Confidence            2      4667899998754433334456777777777666543322 12333443 35677899999999999999987


Q ss_pred             CC
Q 029661          170 KD  171 (190)
Q Consensus       170 ~d  171 (190)
                      .+
T Consensus       226 r~  227 (228)
T COG0325         226 RD  227 (228)
T ss_pred             CC
Confidence            53

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=96.17  E-value=0.18  Score=41.28  Aligned_cols=140  Identities=19%  Similarity=0.137  Sum_probs=84.2

Q ss_pred             HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc---------------chHHHHHHHHHHhCCcE
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST---------------IHLHRTLNQIKDLGAKA   77 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~---------------~~~~~~i~~i~~~g~~~   77 (190)
                      +.++.+++. ++..+.++-. .++ +-++.+.++|++.+.+.... +.               +.+.+.++.+|+.|..+
T Consensus        50 e~~~~l~~~~~~~~~~~~~r-~~~-~~v~~a~~~g~~~i~i~~~~-s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v  126 (259)
T cd07939          50 EAIRAIVALGLPARLIVWCR-AVK-EDIEAALRCGVTAVHISIPV-SDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFV  126 (259)
T ss_pred             HHHHHHHhcCCCCEEEEecc-CCH-HHHHHHHhCCcCEEEEEEec-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence            456666553 3444444211 233 34678889999998886432 11               23457888999999987


Q ss_pred             EEEEc--CCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCc
Q 029661           78 GVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGP  146 (190)
Q Consensus        78 g~~i~--p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~  146 (190)
                      .+.+.  ..++.+.+.++...     +|.|.+    +-+.|...+.++.+.++.+++..+     .++++    +-|...
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~-----~~l~~H~Hn~~Gla~  197 (259)
T cd07939         127 SVGAEDASRADPDFLIEFAEVAQEAGADRLRF----ADTVGILDPFTTYELIRRLRAATD-----LPLEFHAHNDLGLAT  197 (259)
T ss_pred             EEeeccCCCCCHHHHHHHHHHHHHCCCCEEEe----CCCCCCCCHHHHHHHHHHHHHhcC-----CeEEEEecCCCChHH
Confidence            65443  33556655555432     566643    444565556666777777776543     34544    445555


Q ss_pred             ccHHHHHHcCCCEEEEccccc
Q 029661          147 KNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus       147 e~~~~~~~aGad~~VvGsaI~  167 (190)
                      .|.-..+++|++.+  =+++.
T Consensus       198 An~laAi~aG~~~v--d~s~~  216 (259)
T cd07939         198 ANTLAAVRAGATHV--SVTVN  216 (259)
T ss_pred             HHHHHHHHhCCCEE--EEecc
Confidence            57778889999975  44444

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=96.15  E-value=0.29  Score=40.92  Aligned_cols=147  Identities=14%  Similarity=0.198  Sum_probs=96.3

Q ss_pred             HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEE-----
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVL-----   81 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i-----   81 (190)
                      .++.+.+..++|+-+||==....+.+..+.++|.+.|-+=+...+. ++   -.++++.++..|+.+    |-.-     
T Consensus        65 ~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~  144 (284)
T PRK12737         65 IAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDD  144 (284)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCC
Confidence            3444555568899999854444567889999999988875433221 22   356778888887765    2210     


Q ss_pred             ---c----CCCCHHHHHHhhcc--cceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--ccc
Q 029661           82 ---N----PATSLSAIECVLDV--VDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKN  148 (190)
Q Consensus        82 ---~----p~t~~~~~~~~~~~--~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~  148 (190)
                         .    .-|..+..+++.+.  +|.+.+  -++|--+.+.  ..--+++++++++..     ++++..=||-.  .+.
T Consensus       145 ~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~--p~Ld~~~L~~I~~~~-----~iPLVlHGgSG~~~e~  217 (284)
T PRK12737        145 LVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGE--PKLDFERLAEIREKV-----SIPLVLHGASGVPDED  217 (284)
T ss_pred             cccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCC--CcCCHHHHHHHHHHh-----CCCEEEeCCCCCCHHH
Confidence               0    13566777777754  786543  2334111121  123477788887765     36788888766  589


Q ss_pred             HHHHHHcCCCEEEEcccccC
Q 029661          149 AYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       149 ~~~~~~aGad~~VvGsaI~~  168 (190)
                      ++++++.|..-+=++|.+..
T Consensus       218 ~~kai~~Gi~KiNi~T~l~~  237 (284)
T PRK12737        218 VKKAISLGICKVNVATELKI  237 (284)
T ss_pred             HHHHHHCCCeEEEeCcHHHH
Confidence            99999999999999998753

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=96.14  E-value=0.023  Score=45.69  Aligned_cols=77  Identities=14%  Similarity=0.204  Sum_probs=52.1

Q ss_pred             CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH--cCCC
Q 029661           83 PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE--AGAN  158 (190)
Q Consensus        83 p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~--aGad  158 (190)
                      ...|++..+.|.+. +|.+.+.-.+- ..|.   +..++.|+++.+.       ++++++|||+ .+.++.+..  .|||
T Consensus        35 ~~dP~~~a~~~~~~g~~~l~ivDLd~-~~~~---~~n~~~i~~i~~~-------~~v~vgGGirs~e~~~~~~~~l~~a~  103 (221)
T TIGR00734        35 SSSPDDAAKVIEEIGARFIYIADLDR-IVGL---GDNFSLLSKLSKR-------VELIADCGVRSPEDLETLPFTLEFAS  103 (221)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEEccc-ccCC---cchHHHHHHHHhh-------CcEEEcCccCCHHHHHHHHhhhccce
Confidence            35778877777643 78887766652 2222   2335555555543       3699999999 688887754  3699


Q ss_pred             EEEEcccccCCC
Q 029661          159 ALVAGSAVFGAK  170 (190)
Q Consensus       159 ~~VvGsaI~~~~  170 (190)
                      -+|+||.-++.+
T Consensus       104 rvvigT~a~~~p  115 (221)
T TIGR00734       104 RVVVATETLDIT  115 (221)
T ss_pred             EEeecChhhCCH
Confidence            999999988744

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional

Probab=96.05  E-value=0.22  Score=41.26  Aligned_cols=138  Identities=15%  Similarity=0.140  Sum_probs=84.5

Q ss_pred             CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHH---------------------------hCC
Q 029661           23 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD---------------------------LGA   75 (190)
Q Consensus        23 ~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~---------------------------~g~   75 (190)
                      .+..-.+..--.+| ..+..+.++||++|.++.-. +.++..++++++|=                           .+-
T Consensus        67 ~g~~~lVRvp~~~~-~~i~r~LD~GA~GIivP~V~-saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~  144 (267)
T PRK10128         67 YASQPVIRPVEGSK-PLIKQVLDIGAQTLLIPMVD-TAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQAND  144 (267)
T ss_pred             cCCCeEEECCCCCH-HHHHHHhCCCCCeeEecCcC-CHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhcc
Confidence            44444443333344 36788999999999997443 24556666655531                           111


Q ss_pred             cEEEEEcCCCC--HHHHHHhhc--ccceEEEE----eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc
Q 029661           76 KAGVVLNPATS--LSAIECVLD--VVDLVLIM----SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK  147 (190)
Q Consensus        76 ~~g~~i~p~t~--~~~~~~~~~--~~d~i~~m----~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e  147 (190)
                      ++.+.+.-+|+  ++.+++++.  .+|.+.+-    +..-|..+|...|+..+.++++.+...+++.  ...+ ..-+++
T Consensus       145 ~~~vi~qiEt~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~-~~~~~~  221 (267)
T PRK10128        145 SLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGF-LAVDPD  221 (267)
T ss_pred             ccEEEEEECCHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEE-cCCCHH
Confidence            22222222333  455666554  36777653    2233555676678888888888888777653  2221 234678


Q ss_pred             cHHHHHHcCCCEEEEccc
Q 029661          148 NAYKVIEAGANALVAGSA  165 (190)
Q Consensus       148 ~~~~~~~aGad~~VvGsa  165 (190)
                      .++.+++.|++.+++|+-
T Consensus       222 ~a~~~~~~G~~~v~~g~D  239 (267)
T PRK10128        222 MAQKCLAWGANFVAVGVD  239 (267)
T ss_pred             HHHHHHHcCCcEEEEChH
Confidence            899999999999999974

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=96.04  E-value=0.16  Score=42.42  Aligned_cols=146  Identities=15%  Similarity=0.115  Sum_probs=79.9

Q ss_pred             HHHHHhccCCCCcEEEEEee-cChHH---HHHHHHHcCCCEEEE----------cc----cC--CCcchHHHHHHHHHHh
Q 029661           14 LVVDALRPVTDLPLDVHLMI-VEPEQ---RVPDFIKAGADIVSV----------HC----EQ--SSTIHLHRTLNQIKDL   73 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv-~dp~~---~i~~~~~~Gad~v~v----------h~----e~--~~~~~~~~~i~~i~~~   73 (190)
                      ..++.|...+++|+.+|.-. -||..   .++.+.++|+.++++          |.    +.  .+.++..+.|+++++.
T Consensus        68 ~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a  147 (285)
T TIGR02320        68 DVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA  147 (285)
T ss_pred             HHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh
Confidence            34556666678896665555 56654   488899999999999          11    00  0233445566666654


Q ss_pred             --CCcEEEEEcC-----CCC----HHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEe
Q 029661           74 --GAKAGVVLNP-----ATS----LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD  141 (190)
Q Consensus        74 --g~~~g~~i~p-----~t~----~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vd  141 (190)
                        +-++.+....     ...    +++.+.|.+. +|.|.+.    +  +.    ...+.++++.+.++....+.++.+-
T Consensus       148 ~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~----~--~~----~~~~ei~~~~~~~~~~~p~~pl~~~  217 (285)
T TIGR02320       148 QTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH----S--RK----KDPDEILEFARRFRNHYPRTPLVIV  217 (285)
T ss_pred             ccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec----C--CC----CCHHHHHHHHHHhhhhCCCCCEEEe
Confidence              3333332221     111    3455556554 8988763    2  10    1122233333333211112344433


Q ss_pred             CCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661          142 GGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       142 GGI~-~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .+-+ .-++.++.+.|++.++.|+..+.+
T Consensus       218 ~~~~~~~~~~eL~~lG~~~v~~~~~~~~a  246 (285)
T TIGR02320       218 PTSYYTTPTDEFRDAGISVVIYANHLLRA  246 (285)
T ss_pred             cCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence            3332 347899999999999999877753

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=96.01  E-value=0.12  Score=44.31  Aligned_cols=124  Identities=16%  Similarity=0.185  Sum_probs=75.3

Q ss_pred             HHHHcCCCEEEEcccCC--------C------------c----chHHHHHHHHHHh-CC--cEEEEEcCCC------CHH
Q 029661           42 DFIKAGADIVSVHCEQS--------S------------T----IHLHRTLNQIKDL-GA--KAGVVLNPAT------SLS   88 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e~~--------~------------~----~~~~~~i~~i~~~-g~--~~g~~i~p~t------~~~   88 (190)
                      .+.++|+|+|-+|.-.+        +            .    .-+.++++.+|+. |.  .+++=+++..      +.+
T Consensus       149 ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~  228 (343)
T cd04734         149 RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPD  228 (343)
T ss_pred             HHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHH
Confidence            35779999999997211        1            0    1245788888885 44  4566666532      122


Q ss_pred             H---HHHhhc-c--cceEEEEeeecCCCCc-----------ccchh-hHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccH
Q 029661           89 A---IECVLD-V--VDLVLIMSVNPGFGGQ-----------SFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNA  149 (190)
Q Consensus        89 ~---~~~~~~-~--~d~i~~m~v~pG~~gq-----------~~~~~-~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~  149 (190)
                      .   +.+.++ .  +|+|-+-   -|...+           .+.+. .++.++++|+..     +.++.+-|||+ ++.+
T Consensus       229 e~~~~~~~l~~~G~vd~i~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-----~ipvi~~G~i~~~~~~  300 (343)
T cd04734         229 EALEIAARLAAEGLIDYVNVS---AGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV-----DLPVFHAGRIRDPAEA  300 (343)
T ss_pred             HHHHHHHHHHhcCCCCEEEeC---CCCCCcccccccccCCCCCCcchhHHHHHHHHHHc-----CCCEEeeCCCCCHHHH
Confidence            2   223332 2  6777652   121110           01111 244455555543     46888999996 7999


Q ss_pred             HHHHHcC-CCEEEEcccccCCCCHH
Q 029661          150 YKVIEAG-ANALVAGSAVFGAKDYA  173 (190)
Q Consensus       150 ~~~~~aG-ad~~VvGsaI~~~~dp~  173 (190)
                      .++++.| +|.+-+|+++...++.-
T Consensus       301 ~~~l~~~~~D~V~~gR~~ladP~l~  325 (343)
T cd04734         301 EQALAAGHADMVGMTRAHIADPHLV  325 (343)
T ss_pred             HHHHHcCCCCeeeecHHhHhCccHH
Confidence            9988866 99999999999877664

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=96.01  E-value=0.26  Score=41.41  Aligned_cols=141  Identities=18%  Similarity=0.206  Sum_probs=85.5

Q ss_pred             HHHHHHhccCCCCcEEEEEeec--ChHH---HHHHHHHcCCCEEEEcccC-------------CCcchHHHHHHHHHHhC
Q 029661           13 PLVVDALRPVTDLPLDVHLMIV--EPEQ---RVPDFIKAGADIVSVHCEQ-------------SSTIHLHRTLNQIKDLG   74 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~--dp~~---~i~~~~~~Gad~v~vh~e~-------------~~~~~~~~~i~~i~~~g   74 (190)
                      ...+++|...+++|+.+|.=+-  +|..   .++.+.++|+-++++---.             .+.++..+-|+++++.-
T Consensus        67 ~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~  146 (292)
T PRK11320         67 LIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDAR  146 (292)
T ss_pred             HHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhc
Confidence            4556667777889999998873  6754   4888999999988883210             01223344455555532


Q ss_pred             CcEEEEEcCCCC----------HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE---EE
Q 029661           75 AKAGVVLNPATS----------LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI---EV  140 (190)
Q Consensus        75 ~~~g~~i~p~t~----------~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i---~v  140 (190)
                      ...-+.|+--|+          +++.+.|.+ .+|.|.+    ||.       ..++.++++.+.++     .++   ..
T Consensus       147 ~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi----~~~-------~~~~~i~~~~~~~~-----~Pl~~n~~  210 (292)
T PRK11320        147 TDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFP----EAM-------TELEMYRRFADAVK-----VPILANIT  210 (292)
T ss_pred             cCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEe----cCC-------CCHHHHHHHHHhcC-----CCEEEEec
Confidence            223344443332          345555665 4898865    342       13444555554432     233   23


Q ss_pred             eCCCCc-ccHHHHHHcCCCEEEEcccccCC
Q 029661          141 DGGVGP-KNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       141 dGGI~~-e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      .||-++ -+..++.+.|++.++.|+..+.+
T Consensus       211 ~~~~~p~~s~~~L~~lGv~~v~~~~~~~~a  240 (292)
T PRK11320        211 EFGATPLFTTEELASAGVAMVLYPLSAFRA  240 (292)
T ss_pred             cCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence            456554 57999999999999999877653

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=96.00  E-value=0.31  Score=41.46  Aligned_cols=142  Identities=18%  Similarity=0.258  Sum_probs=92.5

Q ss_pred             CCcEEEEEeecChHHHH---HHHHHcCCCEEEEcccC----------C-----CcchHHHHHHHHHHhC--CcEEEEEcC
Q 029661           24 DLPLDVHLMIVEPEQRV---PDFIKAGADIVSVHCEQ----------S-----STIHLHRTLNQIKDLG--AKAGVVLNP   83 (190)
Q Consensus        24 ~~~i~~hlmv~dp~~~i---~~~~~~Gad~v~vh~e~----------~-----~~~~~~~~i~~i~~~g--~~~g~~i~p   83 (190)
                      ..|+.+.|-.+||....   +.+.+.|+|.|=+-.-+          |     ..+-+.+++++.++..  +.+-+=+.-
T Consensus        66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl  145 (323)
T COG0042          66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL  145 (323)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence            56899999999996543   34678898988773211          1     1234677888888865  344443322


Q ss_pred             CCC-----HHHHHHhhcc--cceEEEEeeecCCCCcccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661           84 ATS-----LSAIECVLDV--VDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE  154 (190)
Q Consensus        84 ~t~-----~~~~~~~~~~--~d~i~~m~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~  154 (190)
                      ..+     ...+.+.+..  ++.+.+.+..   ..|.+. +.-++.|+++++..++    ++|..-|+|. ++++.++.+
T Consensus       146 G~d~~~~~~~~ia~~~~~~g~~~ltVHgRt---r~~~y~~~ad~~~I~~vk~~~~~----ipvi~NGdI~s~~~a~~~l~  218 (323)
T COG0042         146 GWDDDDILALEIARILEDAGADALTVHGRT---RAQGYLGPADWDYIKELKEAVPS----IPVIANGDIKSLEDAKEMLE  218 (323)
T ss_pred             ccCcccccHHHHHHHHHhcCCCEEEEeccc---HHhcCCCccCHHHHHHHHHhCCC----CeEEeCCCcCCHHHHHHHHH
Confidence            221     2223444432  6777654444   333332 3568888888887642    7898999996 799998877


Q ss_pred             -cCCCEEEEcccccCCCCH
Q 029661          155 -AGANALVAGSAVFGAKDY  172 (190)
Q Consensus       155 -aGad~~VvGsaI~~~~dp  172 (190)
                       .|+|.+-+|++.++.+..
T Consensus       219 ~tg~DgVMigRga~~nP~l  237 (323)
T COG0042         219 YTGADGVMIGRGALGNPWL  237 (323)
T ss_pred             hhCCCEEEEcHHHccCCcH
Confidence             469999999999887654

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

Probab=96.00  E-value=0.12  Score=43.11  Aligned_cols=117  Identities=16%  Similarity=0.194  Sum_probs=75.1

Q ss_pred             HHHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHhCCcEEEEEcC-----CCCHHHHHHhhcc-
Q 029661           37 EQRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLNP-----ATSLSAIECVLDV-   96 (190)
Q Consensus        37 ~~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~g~~~g~~i~p-----~t~~~~~~~~~~~-   96 (190)
                      ..-++.+.++|++.|.+-.-+.              ..+.+.+.++.++++|.++.+.+..     .++.+.+.+++.. 
T Consensus        77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~  156 (280)
T cd07945          77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFL  156 (280)
T ss_pred             HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHH
Confidence            4458889999999988854210              0123455688899999998776652     3456655555432 


Q ss_pred             ----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEEE
Q 029661           97 ----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV  161 (190)
Q Consensus        97 ----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~V  161 (190)
                          +|.|.+    +.+.|...+..+.+.++.+++..++    .+|.+    |-|....|.-..+++||+.+=
T Consensus       157 ~~~G~~~i~l----~DT~G~~~P~~v~~l~~~l~~~~~~----~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd  221 (280)
T cd07945         157 SDLPIKRIML----PDTLGILSPFETYTYISDMVKRYPN----LHFDFHAHNDYDLAVANVLAAVKAGIKGLH  221 (280)
T ss_pred             HHcCCCEEEe----cCCCCCCCHHHHHHHHHHHHhhCCC----CeEEEEeCCCCCHHHHHHHHHHHhCCCEEE
Confidence                566543    3445555556667777777765432    34544    556666677788999999753

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con

>PTZ00300 pyruvate kinase; Provisional

Probab=95.97  E-value=0.3  Score=43.46  Aligned_cols=139  Identities=12%  Similarity=0.142  Sum_probs=85.3

Q ss_pred             HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCC-Ccccc
Q 029661           39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFG-GQSFI  115 (190)
Q Consensus        39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~-gq~~~  115 (190)
                      .++.+.+.|+|+|.+..-. +.+++.++.+.+.+.|..+.+...-+|+  ++.+.++++.+|-|++-.-+-|.. |   .
T Consensus       152 dI~~ald~gvd~I~~SfVr-saeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~---~  227 (454)
T PTZ00300        152 DLQFGVEQGVDMIFASFIR-SAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIP---A  227 (454)
T ss_pred             HHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcC---h
Confidence            4677889999999997654 3567888888887777777776555555  688999999999998732222211 1   2


Q ss_pred             hhhHHHHHHHHHHHhhcCCCCeEEEeCCC--------Cc---c--cHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661          116 ESQVKKISDLRRMCLEKGVNPWIEVDGGV--------GP---K--NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS  182 (190)
Q Consensus       116 ~~~~~ki~~~~~~~~~~~~~~~i~vdGGI--------~~---e--~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~  182 (190)
                      +......+++-+.+.+.+.  ++-+.-=+        .|   |  .+..++-.|+|.+.+..-=-....|.++++.+++.
T Consensus       228 e~vp~~Qk~Ii~~~~~~gk--pvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I  305 (454)
T PTZ00300        228 EKVVVAQKILISKCNVAGK--PVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARI  305 (454)
T ss_pred             HHHHHHHHHHHHHHHHcCC--CEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHH
Confidence            3333333444444444332  22222111        11   1  34445556999999864333346888888888775


Q ss_pred             h
Q 029661          183 K  183 (190)
Q Consensus       183 ~  183 (190)
                      +
T Consensus       306 ~  306 (454)
T PTZ00300        306 C  306 (454)
T ss_pred             H
Confidence            4

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=95.93  E-value=0.3  Score=41.24  Aligned_cols=148  Identities=14%  Similarity=0.185  Sum_probs=95.2

Q ss_pred             HHHHhccCC-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC-cch---HHHHHHHHHHhCCcE----EEEE----
Q 029661           15 VVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS-TIH---LHRTLNQIKDLGAKA----GVVL----   81 (190)
Q Consensus        15 ~v~~i~~~~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~-~~~---~~~~i~~i~~~g~~~----g~~i----   81 (190)
                      .++.+.+.. .+|+.+||==..-.+.+..+.++|.+.|-+=....+ .++   -.++++.++.+|+.+    |-.-    
T Consensus        64 ~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed  143 (307)
T PRK05835         64 MVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIED  143 (307)
T ss_pred             HHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccC
Confidence            444454444 489999985543455788899999999988544322 122   356778888887654    2210    


Q ss_pred             ----c----CCCCHHHHHHhhc--ccceEEE--EeeecCCCCc-ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cc
Q 029661           82 ----N----PATSLSAIECVLD--VVDLVLI--MSVNPGFGGQ-SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PK  147 (190)
Q Consensus        82 ----~----p~t~~~~~~~~~~--~~d~i~~--m~v~pG~~gq-~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e  147 (190)
                          .    .-|+.+...++.+  .+|.+.+  -++| |...+ .-..-.+++|+++++.+     ++++..=||-. ++
T Consensus       144 ~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~H-G~Yk~~~~p~L~f~~L~~I~~~~-----~iPLVLHGgSGip~  217 (307)
T PRK05835        144 NISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSH-GAFKFKGEPKLDFERLQEVKRLT-----NIPLVLHGASAIPD  217 (307)
T ss_pred             CcccccccccCCCHHHHHHHHHhhCCCEEEEccCccc-cccCCCCCCccCHHHHHHHHHHh-----CCCEEEeCCCCCch
Confidence                0    1355677777775  4787532  2333 22211 11223477888887765     37888888877 33


Q ss_pred             ----------------------cHHHHHHcCCCEEEEcccccC
Q 029661          148 ----------------------NAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       148 ----------------------~~~~~~~aGad~~VvGsaI~~  168 (190)
                                            .++++++.|..-+=++|.+..
T Consensus       218 e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~  260 (307)
T PRK05835        218 DVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRI  260 (307)
T ss_pred             HHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHH
Confidence                                  899999999999999998754

>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=95.87  E-value=0.092  Score=42.97  Aligned_cols=137  Identities=20%  Similarity=0.180  Sum_probs=85.4

Q ss_pred             CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHH--hCC-------------------------c
Q 029661           24 DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD--LGA-------------------------K   76 (190)
Q Consensus        24 ~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~--~g~-------------------------~   76 (190)
                      +....+..=..++. .+..+.+.|+++|.++.-. +.++..++++.+|-  .|.                         .
T Consensus        62 g~~~~VRv~~~~~~-~i~~~Ld~Ga~gIivP~v~-s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~  139 (249)
T TIGR02311        62 PSSPVVRPAIGDPV-LIKQLLDIGAQTLLVPMIE-TAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEE  139 (249)
T ss_pred             CCCcEEECCCCCHH-HHHHHhCCCCCEEEecCcC-CHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhc
Confidence            34555543233443 5788999999999997543 36678888888773  122                         1


Q ss_pred             EEEEEcCCCC--HHHHHHhhc--ccceEEEE----eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCccc
Q 029661           77 AGVVLNPATS--LSAIECVLD--VVDLVLIM----SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN  148 (190)
Q Consensus        77 ~g~~i~p~t~--~~~~~~~~~--~~d~i~~m----~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~  148 (190)
                      ..+...-+|+  ++.+++++.  .+|.+.+-    +..-|..++...++..+-++++++.+...+....  + ..-+++.
T Consensus       140 ~~vi~~IEt~~av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~G--i-~~~~~~~  216 (249)
T TIGR02311       140 ICVLLQVETREALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAG--I-LTADPKL  216 (249)
T ss_pred             eEEEEEecCHHHHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCcee--e-cCCCHHH
Confidence            2233333444  566777763  46777663    2233544554556666667777777765543222  2 2345788


Q ss_pred             HHHHHHcCCCEEEEccc
Q 029661          149 AYKVIEAGANALVAGSA  165 (190)
Q Consensus       149 ~~~~~~aGad~~VvGsa  165 (190)
                      .+.+++.|++.++.|+-
T Consensus       217 ~~~~~~~G~~~~~~~~D  233 (249)
T TIGR02311       217 ARQYLKLGALFVAVGVD  233 (249)
T ss_pred             HHHHHHcCCCEEEEchH
Confidence            99999999999999963

This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.

>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]

Probab=95.82  E-value=0.034  Score=43.95  Aligned_cols=56  Identities=16%  Similarity=0.180  Sum_probs=44.7

Q ss_pred             cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 029661          114 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIK  177 (190)
Q Consensus       114 ~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~  177 (190)
                      |.++.+.+...+..        -++.+.|||+ +|++..+...|++.+.+|++|++...|-+..+
T Consensus       168 ~~~E~l~~~~~~s~--------~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~~  224 (229)
T COG1411         168 PDYELLTKVLELSE--------HPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVEQ  224 (229)
T ss_pred             CCHHHHHHHHHhcc--------CceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHHHh
Confidence            66777766654332        2578999999 79999999999999999999999988876554

>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]

Probab=95.75  E-value=0.81  Score=37.04  Aligned_cols=153  Identities=19%  Similarity=0.217  Sum_probs=85.5

Q ss_pred             ccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC------------CcchHHHHHHHHHH
Q 029661            5 FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS------------STIHLHRTLNQIKD   72 (190)
Q Consensus         5 fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~------------~~~~~~~~i~~i~~   72 (190)
                      +||--.| .+.++++++.++..+.+|.=.-+ +.+++.+++.++|.+++-....            +.++-.+.++.+++
T Consensus        70 ~VPl~kf-~d~lK~lke~~~l~inaHvGfvd-E~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e  147 (275)
T COG1856          70 KVPLWKF-KDELKALKERTGLLINAHVGFVD-ESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKE  147 (275)
T ss_pred             CccHHHH-HHHHHHHHHhhCeEEEEEeeecc-HHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHH
Confidence            4443333 35688888888999999998888 7899999999999999854320            01123345677888


Q ss_pred             hCCcEEEEE--c-----CCCCHHHHHHhhc-ccceEEEEeee--cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC
Q 029661           73 LGAKAGVVL--N-----PATSLSAIECVLD-VVDLVLIMSVN--PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG  142 (190)
Q Consensus        73 ~g~~~g~~i--~-----p~t~~~~~~~~~~-~~d~i~~m~v~--pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG  142 (190)
                      .|+++..=+  .     -....+.++-+.. ..|.+.+-..-  ||+.-+...|-..+.+-++-++..+.-.+ ++ +-|
T Consensus       148 ~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv-~iG  225 (275)
T COG1856         148 NGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PV-SIG  225 (275)
T ss_pred             cCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-Ce-eEe
Confidence            898875322  1     1223333332222 25655443333  45443333333343333222222222122 44 455


Q ss_pred             CCCcc------cHHHHHHcCCCEEE
Q 029661          143 GVGPK------NAYKVIEAGANALV  161 (190)
Q Consensus       143 GI~~e------~~~~~~~aGad~~V  161 (190)
                      -.+|-      -=+.++.+|+|.+.
T Consensus       226 CmrP~Ge~rvk~d~~av~~gVd~It  250 (275)
T COG1856         226 CMRPRGEWRVKLDKEAVLAGVDRIT  250 (275)
T ss_pred             ecCcCchhHHHHHHHHHHcCCceee
Confidence            55542      22356788888764

>cd02067 B12-binding B12 binding domain (B12-BD)

Probab=95.74  E-value=0.25  Score=35.33  Aligned_cols=89  Identities=16%  Similarity=0.151  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCC-CCeEEE
Q 029661           64 HRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEV  140 (190)
Q Consensus        64 ~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~-~~~i~v  140 (190)
                      .-+...+++.|.++ +.+.+.+|.+.+.+.+.  ..|+|.+ |+.   .++. .+...+-++++|+.    +. ++.|.+
T Consensus        17 ~~~~~~l~~~G~~V-~~lg~~~~~~~l~~~~~~~~pdvV~i-S~~---~~~~-~~~~~~~i~~l~~~----~~~~~~i~v   86 (119)
T cd02067          17 NIVARALRDAGFEV-IDLGVDVPPEEIVEAAKEEDADAIGL-SGL---LTTH-MTLMKEVIEELKEA----GLDDIPVLV   86 (119)
T ss_pred             HHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEE-ecc---cccc-HHHHHHHHHHHHHc----CCCCCeEEE
Confidence            34556677889988 55667788876666543  3677765 332   1221 23333344444443    33 577878


Q ss_pred             eCCCCcccHHHHHHcCCCEEEE
Q 029661          141 DGGVGPKNAYKVIEAGANALVA  162 (190)
Q Consensus       141 dGGI~~e~~~~~~~aGad~~Vv  162 (190)
                      .|..-.+....+.+.|+|.++-
T Consensus        87 GG~~~~~~~~~~~~~G~D~~~~  108 (119)
T cd02067          87 GGAIVTRDFKFLKEIGVDAYFG  108 (119)
T ss_pred             ECCCCChhHHHHHHcCCeEEEC
Confidence            8877666667889999998863

This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=95.72  E-value=0.061  Score=44.60  Aligned_cols=139  Identities=14%  Similarity=0.158  Sum_probs=80.0

Q ss_pred             CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE----EEEEcCCCC
Q 029661           11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA----GVVLNPATS   86 (190)
Q Consensus        11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~----g~~i~p~t~   86 (190)
                      -|.++++++++.++.|+.-++|-..   .++.+.+. +|++=+.+..  ..+ .++++++.+.|+-+    |.+++|..-
T Consensus        74 eGL~iL~~vk~~~GlpvvTeV~~~~---~~~~~ae~-vDilQIgAr~--~rn-tdLL~a~~~t~kpV~lKrGqf~s~~e~  146 (281)
T PRK12457         74 EGLRIFEEVKARFGVPVITDVHEVE---QAAPVAEV-ADVLQVPAFL--ARQ-TDLVVAIAKTGKPVNIKKPQFMSPTQM  146 (281)
T ss_pred             HHHHHHHHHHHHHCCceEEEeCCHH---HHHHHhhh-CeEEeeCchh--hch-HHHHHHHhccCCeEEecCCCcCCHHHH
Confidence            3677888888889999999887654   56777777 9999999874  232 46788877777443    333444221


Q ss_pred             HHHHHHhhcc--cceEEEEeeecCCCCcccchhh--HHHHHHHHHHHhhcCCCCeEEEe---------------CCCC--
Q 029661           87 LSAIECVLDV--VDLVLIMSVNPGFGGQSFIESQ--VKKISDLRRMCLEKGVNPWIEVD---------------GGVG--  145 (190)
Q Consensus        87 ~~~~~~~~~~--~d~i~~m~v~pG~~gq~~~~~~--~~ki~~~~~~~~~~~~~~~i~vd---------------GGI~--  145 (190)
                      ....+++...  -++++   .+=|+.- .+...+  +.-|-.+|++.    .++++.+|               ||.+  
T Consensus       147 ~~aae~i~~~Gn~~vil---cERG~~f-gy~~~~~D~~~ip~mk~~~----t~lPVi~DpSHsvq~p~~~g~~s~G~re~  218 (281)
T PRK12457        147 KHVVSKCREAGNDRVIL---CERGSSF-GYDNLVVDMLGFRQMKRTT----GDLPVIFDVTHSLQCRDPLGAASGGRRRQ  218 (281)
T ss_pred             HHHHHHHHHcCCCeEEE---EeCCCCC-CCCCcccchHHHHHHHhhC----CCCCEEEeCCccccCCCCCCCCCCCCHHH
Confidence            2223333322  23333   3445430 111112  22233444431    24677777               3443  


Q ss_pred             -cccHHHHHHcCCCEEEEcc
Q 029661          146 -PKNAYKVIEAGANALVAGS  164 (190)
Q Consensus       146 -~e~~~~~~~aGad~~VvGs  164 (190)
                       +.-.+..+.+|||++.+=+
T Consensus       219 v~~larAAvA~GaDGl~iEv  238 (281)
T PRK12457        219 VLDLARAGMAVGLAGLFLEA  238 (281)
T ss_pred             HHHHHHHHHHhCCCEEEEEe
Confidence             2244566789999998765

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

Probab=95.71  E-value=0.18  Score=41.57  Aligned_cols=139  Identities=17%  Similarity=0.116  Sum_probs=82.8

Q ss_pred             HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcC----CCEEEEcccCC--------------CcchHHHHHHHHHHhC
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAG----ADIVSVHCEQS--------------STIHLHRTLNQIKDLG   74 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~G----ad~v~vh~e~~--------------~~~~~~~~i~~i~~~g   74 (190)
                      +.++.+++. ++..+.+... .+ ...++.+.++|    ++.+.+.....              ..+.+.+.++.+|+.|
T Consensus        50 ~~~~~l~~~~~~~~~~~l~r-~~-~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G  127 (268)
T cd07940          50 EAVKRIAREVLNAEICGLAR-AV-KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHG  127 (268)
T ss_pred             HHHHHHHHhCCCCEEEEEcc-CC-HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC
Confidence            445555552 4555554321 22 23477788888    99888854210              0234567888999999


Q ss_pred             CcEEEEEc--CCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC----C
Q 029661           75 AKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG----G  143 (190)
Q Consensus        75 ~~~g~~i~--p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG----G  143 (190)
                      .++.+...  +.++.+.+.+++..     +|.|.+    +-+.|...+..+.+.++.+|+..++  .+.++.+=+    |
T Consensus       128 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~--~~i~l~~H~Hn~~G  201 (268)
T cd07940         128 LDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINI----PDTVGYLTPEEFGELIKKLKENVPN--IKVPISVHCHNDLG  201 (268)
T ss_pred             CeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEE----CCCCCCCCHHHHHHHHHHHHHhCCC--CceeEEEEecCCcc
Confidence            88775433  33556655554432     465543    3445666667777778888876542  124555444    4


Q ss_pred             CCcccHHHHHHcCCCEE
Q 029661          144 VGPKNAYKVIEAGANAL  160 (190)
Q Consensus       144 I~~e~~~~~~~aGad~~  160 (190)
                      ....|.-..+++|++.|
T Consensus       202 lA~An~laAi~aG~~~i  218 (268)
T cd07940         202 LAVANSLAAVEAGARQV  218 (268)
T ss_pred             hHHHHHHHHHHhCCCEE
Confidence            44457778889999975

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=95.70  E-value=0.42  Score=40.01  Aligned_cols=146  Identities=17%  Similarity=0.185  Sum_probs=95.2

Q ss_pred             HHHHhccCCC--CcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEEc--
Q 029661           15 VVDALRPVTD--LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVLN--   82 (190)
Q Consensus        15 ~v~~i~~~~~--~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i~--   82 (190)
                      .++.+.+..+  +|+-+||==....+.+..+.++|.+.|-+=....+. ++   -.++++.++..|..+    |-.=.  
T Consensus        66 ~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~e  145 (286)
T PRK08610         66 MVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQE  145 (286)
T ss_pred             HHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCcc
Confidence            3444443333  799999855444557788999999999885443221 22   356777788777654    32211  


Q ss_pred             --------CCCCHHHHHHhhcc--cceEEE--EeeecCCCCcccchh-hHHHHHHHHHHHhhcCCCCeEEEeCCCC--cc
Q 029661           83 --------PATSLSAIECVLDV--VDLVLI--MSVNPGFGGQSFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG--PK  147 (190)
Q Consensus        83 --------p~t~~~~~~~~~~~--~d~i~~--m~v~pG~~gq~~~~~-~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e  147 (190)
                              .-|..+..+++.+.  +|.+.+  -++| |...  -.|. -+++++++++..     ++++..=||-.  .+
T Consensus       146 d~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~H-G~Y~--~~p~Ld~~~L~~I~~~~-----~vPLVLHGgSG~~~e  217 (286)
T PRK08610        146 DDVVADGIIYADPKECQELVEKTGIDALAPALGSVH-GPYK--GEPKLGFKEMEEIGLST-----GLPLVLHGGTGIPTK  217 (286)
T ss_pred             CCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccc-cccC--CCCCCCHHHHHHHHHHH-----CCCEEEeCCCCCCHH
Confidence                    12677778888764  787643  3334 2221  1233 377788877754     37888888766  48


Q ss_pred             cHHHHHHcCCCEEEEcccccC
Q 029661          148 NAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       148 ~~~~~~~aGad~~VvGsaI~~  168 (190)
                      .++++++.|+.-+=++|.+..
T Consensus       218 ~~~~ai~~GI~KiNi~T~l~~  238 (286)
T PRK08610        218 DIQKAIPFGTAKINVNTENQI  238 (286)
T ss_pred             HHHHHHHCCCeEEEeccHHHH
Confidence            999999999999999998854

>TIGR02660 nifV_homocitr homocitrate synthase NifV

Probab=95.63  E-value=0.29  Score=42.28  Aligned_cols=135  Identities=19%  Similarity=0.161  Sum_probs=83.3

Q ss_pred             HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC---------------cchHHHHHHHHHHhCCcE
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS---------------TIHLHRTLNQIKDLGAKA   77 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~---------------~~~~~~~i~~i~~~g~~~   77 (190)
                      +.++.+++. ++..+.++. -.+ .+-++.+.++|++.|.+..-. +               .+.+.+.++.+|++|.++
T Consensus        53 e~i~~i~~~~~~~~i~~~~-r~~-~~di~~a~~~g~~~i~i~~~~-Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v  129 (365)
T TIGR02660        53 AVIRAIVALGLPARLMAWC-RAR-DADIEAAARCGVDAVHISIPV-SDLQIEAKLRKDRAWVLERLARLVSFARDRGLFV  129 (365)
T ss_pred             HHHHHHHHcCCCcEEEEEc-CCC-HHHHHHHHcCCcCEEEEEEcc-CHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEE
Confidence            567777654 443443322 123 235788899999998886543 1               123457888999999887


Q ss_pred             EEEEc--CCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCc
Q 029661           78 GVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGP  146 (190)
Q Consensus        78 g~~i~--p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~  146 (190)
                      -+...  +.++.+.+.++...     +|.|.+    +.+.|...+..+.+.++.+++..     +.+|.+    |-|...
T Consensus       130 ~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~-----~v~l~~H~HNd~GlA~  200 (365)
T TIGR02660       130 SVGGEDASRADPDFLVELAEVAAEAGADRFRF----ADTVGILDPFSTYELVRALRQAV-----DLPLEMHAHNDLGMAT  200 (365)
T ss_pred             EEeecCCCCCCHHHHHHHHHHHHHcCcCEEEE----cccCCCCCHHHHHHHHHHHHHhc-----CCeEEEEecCCCChHH
Confidence            66543  33556666555432     566643    44556555566666677776543     234443    556666


Q ss_pred             ccHHHHHHcCCCEE
Q 029661          147 KNAYKVIEAGANAL  160 (190)
Q Consensus       147 e~~~~~~~aGad~~  160 (190)
                      -|.-..+++||+.+
T Consensus       201 ANalaA~~aGa~~v  214 (365)
T TIGR02660       201 ANTLAAVRAGATHV  214 (365)
T ss_pred             HHHHHHHHhCCCEE
Confidence            67778889999965

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.

>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2

Probab=95.62  E-value=0.082  Score=45.42  Aligned_cols=137  Identities=15%  Similarity=0.190  Sum_probs=86.3

Q ss_pred             HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC--HHHHHHhhcccceEEE----EeeecCCCCc
Q 029661           39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS--LSAIECVLDVVDLVLI----MSVNPGFGGQ  112 (190)
Q Consensus        39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~--~~~~~~~~~~~d~i~~----m~v~pG~~gq  112 (190)
                      .++.+.+.|+|+|.+..-- +.+++.++-+.++++|.++.+.-.-+|+  ++.+.+++..+|-|++    ++++-++.  
T Consensus       181 di~fa~~~~vD~IalSFVr-sa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDgimiaRGDLg~e~~~e--  257 (348)
T PF00224_consen  181 DIKFAVENGVDFIALSFVR-SAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEASDGIMIARGDLGVEIPFE--  257 (348)
T ss_dssp             HHHHHHHTT-SEEEETTE--SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSEEEEEHHHHHHHSTGG--
T ss_pred             HHHHHHHcCCCEEEecCCC-chHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhhcCeEEEecCCcceeeeHH--
Confidence            4566788999999997543 3556777777777778777766544444  6778899989999987    34444332  


Q ss_pred             ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC----------Ccc---cHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 029661          113 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGV----------GPK---NAYKVIEAGANALVAGSAVFGAKDYAEAIKGI  179 (190)
Q Consensus       113 ~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI----------~~e---~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l  179 (190)
                       -.|..-++|-+.....     ..++-+..-+          +..   .+..++..|||.+.+..-=.....|.++++.+
T Consensus       258 -~v~~~Qk~ii~~~~~~-----~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~p~~~v~~~  331 (348)
T PF00224_consen  258 -KVPIIQKRIIKKCNAA-----GKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKYPVEAVKTM  331 (348)
T ss_dssp             -GHHHHHHHHHHHHHHH-----T-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHh-----CCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCCHHHHHHHH
Confidence             1333333333333222     2367777776          111   34445566999999985544457899999999


Q ss_pred             HHhhc
Q 029661          180 KTSKR  184 (190)
Q Consensus       180 ~~~~~  184 (190)
                      .+.++
T Consensus       332 ~~i~~  336 (348)
T PF00224_consen  332 ARIIR  336 (348)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88665

7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=95.60  E-value=0.82  Score=38.33  Aligned_cols=137  Identities=16%  Similarity=0.236  Sum_probs=92.3

Q ss_pred             CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-chH---HHHHHHHHHhCCcE----EEEE------------cC
Q 029661           24 DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IHL---HRTLNQIKDLGAKA----GVVL------------NP   83 (190)
Q Consensus        24 ~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~~---~~~i~~i~~~g~~~----g~~i------------~p   83 (190)
                      ++|+.+||==..-.+++..+.++|.+.|-+=....+. +++   .++++.++..|+.+    |-.-            ..
T Consensus        77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~  156 (288)
T TIGR00167        77 GVPVALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESAL  156 (288)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccccc
Confidence            7899999855444567888999999999885443221 222   46677777777665    2220            11


Q ss_pred             CCCHHHHHHhhcc--cceEEE--EeeecCCCCcccchh--hHHHHHHHHHHHhhcCCCCeEEEeCCCC--cccHHHHHHc
Q 029661           84 ATSLSAIECVLDV--VDLVLI--MSVNPGFGGQSFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEA  155 (190)
Q Consensus        84 ~t~~~~~~~~~~~--~d~i~~--m~v~pG~~gq~~~~~--~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~~~~~~~a  155 (190)
                      -|..+..+++.+.  +|.+.+  -++| |..  +..|.  .+++++++++.+     ++++..=||-.  .+.++++++.
T Consensus       157 ~T~peea~~Fv~~TgvD~LAvaiGt~H-G~y--~~~p~~Ld~~~L~~I~~~v-----~vPLVlHGgSG~~~e~~~~ai~~  228 (288)
T TIGR00167       157 YTDPEEAKEFVKLTGVDSLAAAIGNVH-GVY--KGEPKGLDFERLEEIQKYV-----NLPLVLHGGSGIPDEEIKKAISL  228 (288)
T ss_pred             CCCHHHHHHHHhccCCcEEeeccCccc-ccc--CCCCCccCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHc
Confidence            3566777888764  777643  2333 211  11233  577888888776     37888888776  4799999999


Q ss_pred             CCCEEEEcccccC
Q 029661          156 GANALVAGSAVFG  168 (190)
Q Consensus       156 Gad~~VvGsaI~~  168 (190)
                      |+.-+=++|.+..
T Consensus       229 Gi~KiNi~T~l~~  241 (288)
T TIGR00167       229 GVVKVNIDTELQI  241 (288)
T ss_pred             CCeEEEcChHHHH
Confidence            9999999998753

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>TIGR01418 PEP_synth phosphoenolpyruvate synthase

Probab=95.57  E-value=0.12  Score=49.15  Aligned_cols=118  Identities=14%  Similarity=0.086  Sum_probs=82.8

Q ss_pred             HcCCCE--EEEcccCCCcchHHHHHHHHHHhC-------CcEEEEEcCCCCHHHHHHhhcccceEEEEe---------ee
Q 029661           45 KAGADI--VSVHCEQSSTIHLHRTLNQIKDLG-------AKAGVVLNPATSLSAIECVLDVVDLVLIMS---------VN  106 (190)
Q Consensus        45 ~~Gad~--v~vh~e~~~~~~~~~~i~~i~~~g-------~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~---------v~  106 (190)
                      +.|+..  |.++.-. +.+++.++.+.++.+|       ..+|+.+....-+..++++++.+|.+.+-+         +.
T Consensus       625 d~G~~~~~Im~PmV~-s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGtnDLtq~~lg~d  703 (782)
T TIGR01418       625 EMGLTNVEVMIPFVR-TPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGSNDLTQLTLGVD  703 (782)
T ss_pred             hcCCCCeEEEecCCC-CHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECchHHHHHHhCcc
Confidence            678887  7776554 3567777788887754       345666654444677888887899887632         21


Q ss_pred             c-----CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC---CCcccHHHHHHcCCCEEEEccc
Q 029661          107 P-----GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG---VGPKNAYKVIEAGANALVAGSA  165 (190)
Q Consensus       107 p-----G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG---I~~e~~~~~~~aGad~~VvGsa  165 (190)
                      -     +.-++...|..++.|+++.+-..+++  .++.+-|-   -+++.++.+++.|++.+.+++.
T Consensus       704 R~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g--~~vgicge~~~~~p~~~~~l~~~G~~~ls~~~d  768 (782)
T TIGR01418       704 RDSGLVAHLFDERNPAVLRLIEMAIKAAKEHG--KKVGICGQAPSDYPEVVEFLVEEGIDSISLNPD  768 (782)
T ss_pred             CCchhhcccCCCCCHHHHHHHHHHHHHHHhcC--CeEEEeCCCCCCCHHHHHHHHHcCCCEEEECcc
Confidence            1     22356677889998988888877655  45666653   2689999999999999999864

Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=95.57  E-value=0.91  Score=37.98  Aligned_cols=147  Identities=16%  Similarity=0.168  Sum_probs=95.3

Q ss_pred             HHHHhccCC--CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEEc--
Q 029661           15 VVDALRPVT--DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVLN--   82 (190)
Q Consensus        15 ~v~~i~~~~--~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i~--   82 (190)
                      .++++.+..  ++|+-+||==....+.+..+.++|.+.|-+=+...+. ++   -.++++.++..|..+    |-.=.  
T Consensus        66 ~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~e  145 (285)
T PRK07709         66 MVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQE  145 (285)
T ss_pred             HHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCcc
Confidence            455554433  3799999855444557788999999999885443221 22   356777888877655    22211  


Q ss_pred             --------CCCCHHHHHHhhcc--cceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--ccc
Q 029661           83 --------PATSLSAIECVLDV--VDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKN  148 (190)
Q Consensus        83 --------p~t~~~~~~~~~~~--~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~  148 (190)
                              .-|..+..+++.+.  +|.+.+  -++| |.... -..--+++|+++++..     ++++..=||-.  .+.
T Consensus       146 d~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~H-G~Y~~-~p~L~~~~L~~I~~~~-----~iPLVLHGgSG~~~e~  218 (285)
T PRK07709        146 DDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVH-GPYKG-EPNLGFAEMEQVRDFT-----GVPLVLHGGTGIPTAD  218 (285)
T ss_pred             CCcccccccCCCHHHHHHHHHHhCCCEEEEeecccc-cCcCC-CCccCHHHHHHHHHHH-----CCCEEEeCCCCCCHHH
Confidence                    13677778888764  787643  3344 22211 1123367777777654     37888888766  589


Q ss_pred             HHHHHHcCCCEEEEcccccC
Q 029661          149 AYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       149 ~~~~~~aGad~~VvGsaI~~  168 (190)
                      ++++++.|+.-+=++|.+..
T Consensus       219 ~~~ai~~Gi~KiNi~T~l~~  238 (285)
T PRK07709        219 IEKAISLGTSKINVNTENQI  238 (285)
T ss_pred             HHHHHHcCCeEEEeChHHHH
Confidence            99999999999999998754

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=95.54  E-value=0.54  Score=39.31  Aligned_cols=146  Identities=15%  Similarity=0.220  Sum_probs=94.5

Q ss_pred             HHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEE------
Q 029661           16 VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVL------   81 (190)
Q Consensus        16 v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i------   81 (190)
                      ++.+.+...+|+.+||==..-.+.+..+.++|.+.|-+=....+. ++   -.++++.++..|+.+    |-.=      
T Consensus        66 ~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~  145 (284)
T PRK12857         66 VRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDI  145 (284)
T ss_pred             HHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCC
Confidence            344444467899999854433457888999999999885443221 22   356777788877655    2210      


Q ss_pred             --cC----CCCHHHHHHhhc--ccceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--cccH
Q 029661           82 --NP----ATSLSAIECVLD--VVDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNA  149 (190)
Q Consensus        82 --~p----~t~~~~~~~~~~--~~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~~  149 (190)
                        ..    -|..+..+++.+  .+|.+.+  -++|-.+.+.  ..-.+++++++++.+     ++++..=||-.  .+.+
T Consensus       146 ~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~--p~Ld~~~L~~i~~~~-----~vPLVlHGgSG~~~e~~  218 (284)
T PRK12857        146 TVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGE--PKLDFDRLAKIKELV-----NIPIVLHGSSGVPDEAI  218 (284)
T ss_pred             CcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCC--CcCCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHH
Confidence              11    356677777765  4786542  3344222221  123477777777765     36788777655  6899


Q ss_pred             HHHHHcCCCEEEEcccccC
Q 029661          150 YKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       150 ~~~~~aGad~~VvGsaI~~  168 (190)
                      +++++.|..-+=++|.+..
T Consensus       219 ~~ai~~Gi~KiNi~T~~~~  237 (284)
T PRK12857        219 RKAISLGVRKVNIDTNIRE  237 (284)
T ss_pred             HHHHHcCCeEEEeCcHHHH
Confidence            9999999999999998764

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=95.53  E-value=0.45  Score=35.14  Aligned_cols=57  Identities=16%  Similarity=0.191  Sum_probs=37.4

Q ss_pred             HHHHHHHHhhcCC-CCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhh
Q 029661          122 ISDLRRMCLEKGV-NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK  183 (190)
Q Consensus       122 i~~~~~~~~~~~~-~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~  183 (190)
                      ++++.+.+.+.+. ++.+.+.|.+-.+...++.++|+|.++-     ...++.+.++.+.+.+
T Consensus        70 ~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~-----~gt~~~~i~~~l~~~~  127 (132)
T TIGR00640        70 VPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFG-----PGTPIPESAIFLLKKL  127 (132)
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEEC-----CCCCHHHHHHHHHHHH
Confidence            3344444434333 4667676667778899999999987652     2357888888877754

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=95.50  E-value=0.26  Score=40.77  Aligned_cols=114  Identities=14%  Similarity=0.226  Sum_probs=71.7

Q ss_pred             HHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHhCCcEEE---EE--cCCCCHHHHHHhhc----
Q 029661           39 RVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGV---VL--NPATSLSAIECVLD----   95 (190)
Q Consensus        39 ~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~g~~~g~---~i--~p~t~~~~~~~~~~----   95 (190)
                      .++.+.++|++.+.+-.-+.              ..+.+.+.++.+|++|.++.+   ..  .+.++.+.+.+++.    
T Consensus        83 ~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~  162 (273)
T cd07941          83 NLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAE  162 (273)
T ss_pred             HHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHh
Confidence            56778999999887732110              022456788899999998866   22  12345555555442    


Q ss_pred             -ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661           96 -VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        96 -~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~  160 (190)
                       .+|.|.+    +.+.|...+..+.+.++.+|+.+++    .+|++    |-|....|.-..+++||+.+
T Consensus       163 ~g~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~----~~l~~H~Hnd~Gla~An~laA~~aGa~~i  224 (273)
T cd07941         163 AGADWLVL----CDTNGGTLPHEIAEIVKEVRERLPG----VPLGIHAHNDSGLAVANSLAAVEAGATQV  224 (273)
T ss_pred             CCCCEEEE----ecCCCCCCHHHHHHHHHHHHHhCCC----CeeEEEecCCCCcHHHHHHHHHHcCCCEE
Confidence             2566543    3445655566667777777776542    34543    45666667778889999965

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]

Probab=95.49  E-value=0.14  Score=43.44  Aligned_cols=72  Identities=21%  Similarity=0.264  Sum_probs=50.4

Q ss_pred             HHHHHhccCCCCcEEEEEeec--Ch-HHHHHHHHHcCCCEEEEccc---CCCcchHHHHHHHHHHhCCcEEEEEcCCCC
Q 029661           14 LVVDALRPVTDLPLDVHLMIV--EP-EQRVPDFIKAGADIVSVHCE---QSSTIHLHRTLNQIKDLGAKAGVVLNPATS   86 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~--dp-~~~i~~~~~~Gad~v~vh~e---~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~   86 (190)
                      +.++.||+-.+..+++||.+.  .+ ++-++.+.++|-|=|-||+-   +...+...+.++.++++|+.+|+-+. .+|
T Consensus        98 ~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~dvG~EiP-aip  175 (353)
T COG2108          98 EYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMDVGVEIP-AIP  175 (353)
T ss_pred             HHHHHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhCccceeecC-CCc
Confidence            345666665677899999993  44 45688999999999999982   11122233455556699999999874 444

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=95.48  E-value=0.68  Score=38.92  Aligned_cols=142  Identities=12%  Similarity=0.122  Sum_probs=83.0

Q ss_pred             HHHHHhccCCCCcEEEEEeec--ChH---HHHHHHHHcCCCEEEEcccCC-------------CcchHHHHHHHHHHhCC
Q 029661           14 LVVDALRPVTDLPLDVHLMIV--EPE---QRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGA   75 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~--dp~---~~i~~~~~~Gad~v~vh~e~~-------------~~~~~~~~i~~i~~~g~   75 (190)
                      ..+++|...+++|+.+|.=+-  ++.   +.++.+.++|+-+|++---..             +.++..+-|+++++.--
T Consensus        67 ~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~  146 (294)
T TIGR02319        67 INAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEARE  146 (294)
T ss_pred             HHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhcc
Confidence            455666666889999998873  443   358899999999998832110             12223344444554322


Q ss_pred             cEEEEEcCCCC----------HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE-EEeCC
Q 029661           76 KAGVVLNPATS----------LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI-EVDGG  143 (190)
Q Consensus        76 ~~g~~i~p~t~----------~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i-~vdGG  143 (190)
                      ..-+.|+--|+          +++.+.|.+ .+|.|.+    ||.       ...+.++++.+.++.   .+.. .+.||
T Consensus       147 ~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi----~~~-------~~~~ei~~~~~~~~~---P~~~nv~~~~  212 (294)
T TIGR02319       147 DEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFL----EAM-------LDVEEMKRVRDEIDA---PLLANMVEGG  212 (294)
T ss_pred             CCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEe----cCC-------CCHHHHHHHHHhcCC---CeeEEEEecC
Confidence            23344432222          345555554 3788864    332       123445555554421   1211 24455


Q ss_pred             CCc-ccHHHHHHcCCCEEEEcccccCC
Q 029661          144 VGP-KNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       144 I~~-e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      -++ -++.++.+.|++.++.|...+.+
T Consensus       213 ~~p~~s~~eL~~lG~~~v~~~~~~~~a  239 (294)
T TIGR02319       213 KTPWLTTKELESIGYNLAIYPLSGWMA  239 (294)
T ss_pred             CCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence            554 68999999999999999887764

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.47  E-value=0.26  Score=35.36  Aligned_cols=90  Identities=22%  Similarity=0.304  Sum_probs=65.2

Q ss_pred             EEEEcCCCCHHHHHHhhcccceEEEEeeecCCC-CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC
Q 029661           78 GVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG  156 (190)
Q Consensus        78 g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG  156 (190)
                      |+.+.++++++.+...++..+.|.+  --|.|. |..|        +..|.+....++.-+|=+.|-+-.+++.-+..+|
T Consensus         1 gv~l~~d~~~~~l~~~L~~l~lI~i--~FP~F~DGRgf--------S~ArlLR~r~gy~GelRA~Gdvl~DQl~~l~R~G   70 (110)
T PF06073_consen    1 GVWLAPDDDPEELADDLDRLPLIAI--DFPKFTDGRGF--------SQARLLRERYGYTGELRAVGDVLRDQLFYLRRCG   70 (110)
T ss_pred             CeecCCCCCHHHHHhhccCCCEEEE--ECCCcCCchHh--------HHHHHHHHHcCCCCcEEEeccchHHHHHHHHHcC
Confidence            5788999999989888887777754  247774 6554        2223333345667789999999999999999999


Q ss_pred             CCEEEEcccccCCCCHHHHHHHHHH
Q 029661          157 ANALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       157 ad~~VvGsaI~~~~dp~~~~~~l~~  181 (190)
                      .|.+.+-.    ..+++.+.+.+..
T Consensus        71 Fdsf~l~~----~~~~~~~~~~l~~   91 (110)
T PF06073_consen   71 FDSFELRE----DQDPEDALAALSD   91 (110)
T ss_pred             CCEEEeCC----CCCHHHHHHHHhh
Confidence            99998653    3566666565543

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=95.45  E-value=0.27  Score=38.84  Aligned_cols=142  Identities=20%  Similarity=0.245  Sum_probs=80.7

Q ss_pred             CCCCHHHHHHhccC-CCCcEEEEEeecChH---------HHHHHHHHcCCCEEEEcccCCC-----cchHHHHHHHHHHh
Q 029661            9 ITIGPLVVDALRPV-TDLPLDVHLMIVEPE---------QRVPDFIKAGADIVSVHCEQSS-----TIHLHRTLNQIKDL   73 (190)
Q Consensus         9 ~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~---------~~i~~~~~~Gad~v~vh~e~~~-----~~~~~~~i~~i~~~   73 (190)
                      +...|..++..++. .+..+.++.-+.-|.         .-++.+.+.|||-+-++...+.     .+...+.+..+++.
T Consensus        34 v~v~p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~  113 (203)
T cd00959          34 VCVNPCFVPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEA  113 (203)
T ss_pred             EEEcHHHHHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHh
Confidence            33446667766553 334556665554341         2367789999999999754320     12233344444443


Q ss_pred             --CCcEEEEEc--CCCCHHHHHHhh---c--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC
Q 029661           74 --GAKAGVVLN--PATSLSAIECVL---D--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV  144 (190)
Q Consensus        74 --g~~~g~~i~--p~t~~~~~~~~~---~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI  144 (190)
                        |+.+-+.+.  .-+ .+.+....   -  .+|+|=.   ..|+..   ...+++.++.+++..+   ..++|-+.|||
T Consensus       114 ~~g~~lkvI~e~~~l~-~~~i~~a~ria~e~GaD~IKT---sTG~~~---~~at~~~v~~~~~~~~---~~v~ik~aGGi  183 (203)
T cd00959         114 CGGAPLKVILETGLLT-DEEIIKACEIAIEAGADFIKT---STGFGP---GGATVEDVKLMKEAVG---GRVGVKAAGGI  183 (203)
T ss_pred             cCCCeEEEEEecCCCC-HHHHHHHHHHHHHhCCCEEEc---CCCCCC---CCCCHHHHHHHHHHhC---CCceEEEeCCC
Confidence              433333222  222 22222222   1  2788742   234432   3456777777777665   24789999999


Q ss_pred             C-cccHHHHHHcCCCEE
Q 029661          145 G-PKNAYKVIEAGANAL  160 (190)
Q Consensus       145 ~-~e~~~~~~~aGad~~  160 (190)
                      + .+.+.+++++|+|-+
T Consensus       184 kt~~~~l~~~~~g~~ri  200 (203)
T cd00959         184 RTLEDALAMIEAGATRI  200 (203)
T ss_pred             CCHHHHHHHHHhChhhc
Confidence            9 688889999998854

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>TIGR00284 dihydropteroate synthase-related protein

Probab=95.43  E-value=0.3  Score=43.98  Aligned_cols=104  Identities=16%  Similarity=0.115  Sum_probs=60.4

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC-CCCHHHHHH
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP-ATSLSAIEC   92 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p-~t~~~~~~~   92 (190)
                      ..|+.+++.++.|+-+|.  .+|. .++.+.++|||+|.=- .   ..+..+.+..++++|..+.+.-.. ....+.+.+
T Consensus       198 ~~V~~l~~~~~~pISIDT--~~~~-v~eaAL~aGAdiINsV-s---~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~  270 (499)
T TIGR00284       198 EKVKTALDALDSPVIADT--PTLD-ELYEALKAGASGVIMP-D---VENAVELASEKKLPEDAFVVVPGNQPTNYEELAK  270 (499)
T ss_pred             HHHHHHHhhCCCcEEEeC--CCHH-HHHHHHHcCCCEEEEC-C---ccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHH
Confidence            456666766677877754  4444 5667788899988732 2   224556778788888877554322 222344444


Q ss_pred             hhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHH
Q 029661           93 VLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMC  129 (190)
Q Consensus        93 ~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~  129 (190)
                      .++.     ++.|+   ++||.+-+.+  ..++.|.+++.+.
T Consensus       271 ~ie~a~~~Gi~~II---lDPglg~~~~--~l~~sL~~l~~~r  307 (499)
T TIGR00284       271 AVKKLRTSGYSKVA---ADPSLSPPLL--GLLESIIRFRRAS  307 (499)
T ss_pred             HHHHHHHCCCCcEE---EeCCCCcchH--HHHHHHHHHHHHH
Confidence            3322     33333   4899874433  3455566665543

This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=95.43  E-value=0.33  Score=41.33  Aligned_cols=126  Identities=19%  Similarity=0.243  Sum_probs=68.7

Q ss_pred             CCcEEEEEee--cChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC-CCHHHHHHhhc-ccce
Q 029661           24 DLPLDVHLMI--VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD-VVDL   99 (190)
Q Consensus        24 ~~~i~~hlmv--~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~-t~~~~~~~~~~-~~d~   99 (190)
                      +.|+..-=|.  .++ .+...++++|.=.++ |.+. +.+...+.++.+|+ ...++..+.+. ...+.++.+++ .+|.
T Consensus        34 ~~Piv~apM~~vt~~-~ma~ava~~GglGvi-~~~~-~~~~~~~~i~~vk~-~l~v~~~~~~~~~~~~~~~~l~eagv~~  109 (325)
T cd00381          34 NIPLVSAPMDTVTES-EMAIAMARLGGIGVI-HRNM-SIEEQAEEVRKVKG-RLLVGAAVGTREDDKERAEALVEAGVDV  109 (325)
T ss_pred             CCCEEecCCCcCCcH-HHHHHHHHCCCEEEE-eCCC-CHHHHHHHHHHhcc-CceEEEecCCChhHHHHHHHHHhcCCCE
Confidence            3465543343  233 355667888875554 4443 23334444444442 22333444332 11345555554 3777


Q ss_pred             EEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEc
Q 029661          100 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG  163 (190)
Q Consensus       100 i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvG  163 (190)
                      |.+   +... |.  .+...+.++++|+..+    +.++.+....+.+.+..+.++|||++++|
T Consensus       110 I~v---d~~~-G~--~~~~~~~i~~ik~~~p----~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg  163 (325)
T cd00381         110 IVI---DSAH-GH--SVYVIEMIKFIKKKYP----NVDVIAGNVVTAEAARDLIDAGADGVKVG  163 (325)
T ss_pred             EEE---ECCC-CC--cHHHHHHHHHHHHHCC----CceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence            654   3222 21  1445666777776532    35665544455799999999999999984

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=95.43  E-value=0.31  Score=41.57  Aligned_cols=125  Identities=18%  Similarity=0.237  Sum_probs=71.7

Q ss_pred             CcEEEEEeecCh-HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC-HHHHHHhhcc---cce
Q 029661           25 LPLDVHLMIVEP-EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-LSAIECVLDV---VDL   99 (190)
Q Consensus        25 ~~i~~hlmv~dp-~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-~~~~~~~~~~---~d~   99 (190)
                      .||..-=|.... .++.+.+.+.|.-.+. |--  +.+....+.+..+..+..+++++..... .+++.++++.   +|.
T Consensus        38 ~P~~inAM~t~iN~~LA~~a~~~G~~~~~-~k~--~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~  114 (326)
T PRK05458         38 LPVVPANMQTIIDEKIAEWLAENGYFYIM-HRF--DPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEY  114 (326)
T ss_pred             CcEEEecccchhHHHHHHHHHHcCCEEEE-ecC--CHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCE
Confidence            455554454332 2345556777744444 432  1333344444444446666666664322 3566666663   388


Q ss_pred             EEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEc
Q 029661          100 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG  163 (190)
Q Consensus       100 i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvG  163 (190)
                      |.+=+.+    |  ......+.|+++|+..++    .++ +.|.+. .+.+..+.++|+|++.+|
T Consensus       115 i~iD~a~----g--h~~~~~e~I~~ir~~~p~----~~v-i~g~V~t~e~a~~l~~aGad~i~vg  168 (326)
T PRK05458        115 ITIDIAH----G--HSDSVINMIQHIKKHLPE----TFV-IAGNVGTPEAVRELENAGADATKVG  168 (326)
T ss_pred             EEEECCC----C--chHHHHHHHHHHHhhCCC----CeE-EEEecCCHHHHHHHHHcCcCEEEEC
Confidence            8764444    1  123455567777776542    333 555455 899999999999999877

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=95.42  E-value=0.14  Score=41.61  Aligned_cols=140  Identities=19%  Similarity=0.278  Sum_probs=80.9

Q ss_pred             HHHHHhccCCCCcEEEEEeec--C-hH---HHHHHHHHcCCCEEEEccc-CC-------CcchHHHHHHHHHHhCCcEEE
Q 029661           14 LVVDALRPVTDLPLDVHLMIV--E-PE---QRVPDFIKAGADIVSVHCE-QS-------STIHLHRTLNQIKDLGAKAGV   79 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~--d-p~---~~i~~~~~~Gad~v~vh~e-~~-------~~~~~~~~i~~i~~~g~~~g~   79 (190)
                      ..++.|...+++|+.+|+=+-  | |.   +.++.+.++|+.++++--- .+       +.++..+-|+++++.-...++
T Consensus        59 ~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~  138 (238)
T PF13714_consen   59 AAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDF  138 (238)
T ss_dssp             HHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTS
T ss_pred             HHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeE
Confidence            456666666899999999883  4 64   4578899999999988432 00       122333444444443222225


Q ss_pred             EEcCCCCH------------HHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc
Q 029661           80 VLNPATSL------------SAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP  146 (190)
Q Consensus        80 ~i~p~t~~------------~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~  146 (190)
                      +|+-.|+.            ++.+.|.+ .+|.|.+    ||.       ...+.++++.+.++     .++.+-.+=..
T Consensus       139 ~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi----~~~-------~~~~~i~~~~~~~~-----~Pl~v~~~~~~  202 (238)
T PF13714_consen  139 VIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFI----PGL-------QSEEEIERIVKAVD-----GPLNVNPGPGT  202 (238)
T ss_dssp             EEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEE----TTS-------SSHHHHHHHHHHHS-----SEEEEETTSSS
T ss_pred             EEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEe----CCC-------CCHHHHHHHHHhcC-----CCEEEEcCCCC
Confidence            55534432            34444444 3787764    443       12333555555442     45665554224


Q ss_pred             ccHHHHHHcCCCEEEEcccccCC
Q 029661          147 KNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       147 e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      -++.++.+.|+..+..|+..+.+
T Consensus       203 ~~~~eL~~lGv~~v~~~~~~~~a  225 (238)
T PF13714_consen  203 LSAEELAELGVKRVSYGNSLLRA  225 (238)
T ss_dssp             S-HHHHHHTTESEEEETSHHHHH
T ss_pred             CCHHHHHHCCCcEEEEcHHHHHH
Confidence            78889999999999999887763

...

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=95.41  E-value=0.067  Score=42.52  Aligned_cols=72  Identities=11%  Similarity=0.132  Sum_probs=45.8

Q ss_pred             CHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-ccHHHHHHcCCCEEEEc
Q 029661           86 SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEAGANALVAG  163 (190)
Q Consensus        86 ~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-e~~~~~~~aGad~~VvG  163 (190)
                      +.+..+.+.+. ++.+-+.+. ++..+.     .++.++.+|+..     +.+|.+.|++.. +.+..+.++|||.+++|
T Consensus        33 ~~~~A~~~~~~GA~~l~v~~~-~~~~~g-----~~~~~~~i~~~v-----~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~  101 (217)
T cd00331          33 PVEIAKAYEKAGAAAISVLTE-PKYFQG-----SLEDLRAVREAV-----SLPVLRKDFIIDPYQIYEARAAGADAVLLI  101 (217)
T ss_pred             HHHHHHHHHHcCCCEEEEEeC-ccccCC-----CHHHHHHHHHhc-----CCCEEECCeecCHHHHHHHHHcCCCEEEEe
Confidence            44455555443 677755443 343322     234455555543     367887777774 58999999999999999


Q ss_pred             ccccC
Q 029661          164 SAVFG  168 (190)
Q Consensus       164 saI~~  168 (190)
                      .....
T Consensus       102 ~~~~~  106 (217)
T cd00331         102 VAALD  106 (217)
T ss_pred             eccCC
Confidence            87665

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]

Probab=95.38  E-value=0.56  Score=37.69  Aligned_cols=164  Identities=14%  Similarity=0.227  Sum_probs=102.1

Q ss_pred             HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------------CcchHHHHHHHHHHhCCcEEEEE
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGAKAGVVL   81 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------------~~~~~~~~i~~i~~~g~~~g~~i   81 (190)
                      -+..||+..+.++..-+-+.  +++++.+.+...+.||+-+|.-             ...-+..+++.+++.|+++.+++
T Consensus        54 Dv~~lr~~~~~~~NlE~a~t--eEml~ia~~~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFi  131 (243)
T COG0854          54 DVRILRALIDTRFNLEMAPT--EEMLAIALKTKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFI  131 (243)
T ss_pred             hHHHHHHHcccceecccCch--HHHHHHHHhcCCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEe
Confidence            34555554444544432222  3457788899999999976531             01236788999999999999999


Q ss_pred             cCCCC-HHHHHHhhcccceEEEEeeecCCCCcccc---h-h---hHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHH
Q 029661           82 NPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSFI---E-S---QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI  153 (190)
Q Consensus        82 ~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~~---~-~---~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~  153 (190)
                      .|+-. ++.....  .+|+|-+   +.|..+....   + .   .++++++..++-.+  ..+.+..+=|+|-.|++.+.
T Consensus       132 D~d~~qi~aa~~~--gA~~IEL---hTG~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~--lGL~VnAGHgLty~Nv~~~a  204 (243)
T COG0854         132 DPDPEQIEAAAEV--GAPRIEL---HTGPYADAHDAAEQARADAELERLAKAAKLAAE--LGLKVNAGHGLTYHNVKPLA  204 (243)
T ss_pred             CCCHHHHHHHHHh--CCCEEEE---ecccccccCChHHHHHHHHHHHHHHHHHHHHHH--cCceEecCCCccccchHHHh
Confidence            97532 3333332  5889876   4454443333   1 1   34455555444433  34677888899999999876


Q ss_pred             HcC-CCEEEEcccccCC---CCHHHHHHHHHHhhcccc
Q 029661          154 EAG-ANALVAGSAVFGA---KDYAEAIKGIKTSKRPQA  187 (190)
Q Consensus       154 ~aG-ad~~VvGsaI~~~---~dp~~~~~~l~~~~~~~~  187 (190)
                      +.- ..-+=+|-+|...   --..++++++++.++..+
T Consensus       205 ~~~~i~ElnIGH~iia~Av~~Gl~~aV~~m~~~~~~~~  242 (243)
T COG0854         205 AIPPLAELNIGHSIIARAVFVGLEEAVREMKRLMKRAR  242 (243)
T ss_pred             cCCcceeecccHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence            543 3334557666543   356788888888776544

>PRK06464 phosphoenolpyruvate synthase; Validated

Probab=95.37  E-value=0.14  Score=48.73  Aligned_cols=123  Identities=15%  Similarity=0.105  Sum_probs=83.5

Q ss_pred             HHHHHH-cCCCE--EEEcccCCCcchHHHHHHHHHHhCC-------cEEEEEcCCCCHHHHHHhhcccceEEEEeee---
Q 029661           40 VPDFIK-AGADI--VSVHCEQSSTIHLHRTLNQIKDLGA-------KAGVVLNPATSLSAIECVLDVVDLVLIMSVN---  106 (190)
Q Consensus        40 i~~~~~-~Gad~--v~vh~e~~~~~~~~~~i~~i~~~g~-------~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~---  106 (190)
                      +..+.+ .|++.  |.++.-. +.++..++.+.++..|.       .+|+.+....-+..+.+++..+|.+.+-+-+   
T Consensus       626 I~rald~~G~~~~~ImvPmV~-s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~IGtnDLtq  704 (795)
T PRK06464        626 IKRVREEMGLTNVEVMIPFVR-TVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSIGSNDLTQ  704 (795)
T ss_pred             HHHHHHhcCCCCeEEEecCCC-CHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEECchHHHH
Confidence            334556 68877  6676544 35677778888876543       3566665444467788888779988763221   


Q ss_pred             --c---------CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC---CCCcccHHHHHHcCCCEEEEccc
Q 029661          107 --P---------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG---GVGPKNAYKVIEAGANALVAGSA  165 (190)
Q Consensus       107 --p---------G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG---GI~~e~~~~~~~aGad~~VvGsa  165 (190)
                        -         +..++...|..++.|+++.+-..+++  .++.+-|   |-+++.++.+++.|++.+.+++.
T Consensus       705 ~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g--~~vgicge~a~~~p~~~~~l~~~G~~~ls~~~d  775 (795)
T PRK06464        705 LTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAG--KYVGICGQAPSDHPDFAEWLVEEGIDSISLNPD  775 (795)
T ss_pred             HHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcC--CEEEEcCCCCCCcHHHHHHHHHCCCCEEEEcch
Confidence              1         12355667888888888888776654  4566655   33488999999999999999963

>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=95.35  E-value=0.51  Score=38.41  Aligned_cols=127  Identities=17%  Similarity=0.321  Sum_probs=68.4

Q ss_pred             ChHHHHHHHHHcCCCEEEEcccCCCcchH-HHHHHHHHHh-CCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecC---
Q 029661           35 EPEQRVPDFIKAGADIVSVHCEQSSTIHL-HRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG---  108 (190)
Q Consensus        35 dp~~~i~~~~~~Gad~v~vh~e~~~~~~~-~~~i~~i~~~-g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG---  108 (190)
                      ||-.....+..+|||+||+|.-- +..++ .+-+..+++. ..+.-+-.+|..+.  +.-.++ ..|++.+..-.+.   
T Consensus        23 dpv~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e~--~~ia~~~kP~~vtLVPE~r~e~T   99 (239)
T PF03740_consen   23 DPVEAARIAEEAGADGITVHLRE-DRRHIQDRDVRRLRELVKTPLNLEMAPTEEM--VDIALKVKPDQVTLVPEKREELT   99 (239)
T ss_dssp             -HHHHHHHHHHTT-SEEEEEB-T-T-SSS-HHHHHHHHHH-SSEEEEEEESSHHH--HHHHHHH--SEEEEE--SGGGBS
T ss_pred             CHHHHHHHHHHcCCCEEEeccCC-CcCcCCHHHHHHHHHHcccCEEeccCCCHHH--HHHHHhCCcCEEEECCCCCCCcC
Confidence            56677778899999999999763 22232 2334444442 34455555554332  222222 3688877543221   


Q ss_pred             C-CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccccc
Q 029661          109 F-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus       109 ~-~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~  167 (190)
                      + +|-.+. .-.++++.+.+.+.+.|..+.+=+|..  ++.++...+.|||.+=.=+.=|
T Consensus       100 TegGldv~-~~~~~l~~~i~~L~~~gIrvSLFiDP~--~~qi~~A~~~Gad~VELhTG~y  156 (239)
T PF03740_consen  100 TEGGLDVA-GNRDRLKPVIKRLKDAGIRVSLFIDPD--PEQIEAAKELGADRVELHTGPY  156 (239)
T ss_dssp             TTSSB-TC-GGHHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEEEEETHHH
T ss_pred             CCcCChhh-cCHHHHHHHHHHHHhCCCEEEEEeCCC--HHHHHHHHHcCCCEEEEehhHh
Confidence            1 232222 235666766666666665555556665  6889999999999998876544

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....

>PRK01362 putative translaldolase; Provisional

Probab=95.33  E-value=1.2  Score=35.77  Aligned_cols=159  Identities=15%  Similarity=0.149  Sum_probs=93.9

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHH---HHHcCCCEEE-EcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPD---FIKAGADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA   89 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~---~~~~Gad~v~-vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~   89 (190)
                      +.+++|++..+-++.+-..-.|.+..+++   +.+.+-+.++ ++.    ...=-+.++.+++.|+++-+..-- +..+.
T Consensus        41 ~~~~~i~~~i~g~vs~qv~~~d~~~m~~~a~~l~~~~~~i~iKIP~----T~~G~~a~~~L~~~Gi~v~~T~vf-s~~Qa  115 (214)
T PRK01362         41 EVIKEICSIVDGPVSAEVIALDAEGMIKEGRELAKIAPNVVVKIPM----TPEGLKAVKALSKEGIKTNVTLIF-SANQA  115 (214)
T ss_pred             HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEeCC----CHHHHHHHHHHHHCCCceEEeeec-CHHHH
Confidence            45556665544455555544566655443   4444544333 332    122345677777788887664421 22222


Q ss_pred             HHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccC-
Q 029661           90 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG-  168 (190)
Q Consensus        90 ~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~-  168 (190)
                      +.-....++||..   .-|--.. .....++.++++++++..++++..|-+..=-|.+++.++..+|+|.+-++-.+++ 
T Consensus       116 ~~Aa~aGa~yisp---yvgRi~d-~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl~~  191 (214)
T PRK01362        116 LLAAKAGATYVSP---FVGRLDD-IGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVIKQ  191 (214)
T ss_pred             HHHHhcCCcEEEe---ecchHhh-cCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHHHH
Confidence            2222335777743   2222111 1223467788888888877778888666555689999999999999999977664 


Q ss_pred             ---CCCHHHHHHHHHH
Q 029661          169 ---AKDYAEAIKGIKT  181 (190)
Q Consensus       169 ---~~dp~~~~~~l~~  181 (190)
                         .+-..++++.+.+
T Consensus       192 l~~~p~t~~~~~~F~~  207 (214)
T PRK01362        192 LFKHPLTDKGLEKFLA  207 (214)
T ss_pred             HHcCCchHHHHHHHHH
Confidence               4555677777654

>PRK15447 putative protease; Provisional

Probab=95.30  E-value=0.37  Score=40.49  Aligned_cols=114  Identities=9%  Similarity=-0.049  Sum_probs=75.3

Q ss_pred             cChHHHHHHHHHcCCCEEEEcccC------CCcchHHHHHHHHHHhCCcEEEEEcCC-C-C--HHHHHHhhcc-cceEEE
Q 029661           34 VEPEQRVPDFIKAGADIVSVHCEQ------SSTIHLHRTLNQIKDLGAKAGVVLNPA-T-S--LSAIECVLDV-VDLVLI  102 (190)
Q Consensus        34 ~dp~~~i~~~~~~Gad~v~vh~e~------~~~~~~~~~i~~i~~~g~~~g~~i~p~-t-~--~~~~~~~~~~-~d~i~~  102 (190)
                      .+.+.|...+.+.|||.|.+..+.      -+.+++.+.++.++++|+++.++++.- . +  .+.+.++++. .|.|++
T Consensus        15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v   94 (301)
T PRK15447         15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA   94 (301)
T ss_pred             CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE
Confidence            455678888889999999997432      124678999999999999999987643 2 2  3345555443 232221


Q ss_pred             EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc---ccHHHHHHcCCCEEEEccccc
Q 029661          103 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP---KNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus       103 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~---e~~~~~~~aGad~~VvGsaI~  167 (190)
                        -+         ...   +..+++.      +.++.+|-.+|.   .++.-+.+.|++-+++..-+-
T Consensus        95 --~d---------~g~---l~~~~e~------~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELs  142 (301)
T PRK15447         95 --ND---------LGA---VRLLAER------GLPFVAGPALNCYNAATLALLARLGATRWCMPVELS  142 (301)
T ss_pred             --eC---------HHH---HHHHHhc------CCCEEEecccccCCHHHHHHHHHcCCcEEEECCcCC
Confidence              11         122   3333331      256888888874   566778899999988876554

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=95.28  E-value=0.88  Score=38.71  Aligned_cols=141  Identities=13%  Similarity=0.092  Sum_probs=90.3

Q ss_pred             CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEE--------cC--CC
Q 029661           24 DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVL--------NP--AT   85 (190)
Q Consensus        24 ~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i--------~p--~t   85 (190)
                      .+|+.+||==..-.+.+..+.++|.+.|-+=....+. ++   -.++++.++.+|+.+    |-.-        ..  -|
T Consensus        85 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T  164 (321)
T PRK07084         85 PIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYT  164 (321)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccC
Confidence            6899999855544557889999999999885443221 22   356777888877655    2210        11  35


Q ss_pred             CHHHHHHhhc--ccceEEE--EeeecCCCC-cc--cchhhHHHHHHHHHHHhhcCCCCeEEEeCCC--------------
Q 029661           86 SLSAIECVLD--VVDLVLI--MSVNPGFGG-QS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGV--------------  144 (190)
Q Consensus        86 ~~~~~~~~~~--~~d~i~~--m~v~pG~~g-q~--~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI--------------  144 (190)
                      ..+...++++  .+|.+.+  -++|--+.+ +.  -..--+++++++++.++    ++++..=||-              
T Consensus       165 ~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~----~vPLVLHGgSg~~~~~~~~~~~~g  240 (321)
T PRK07084        165 QPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP----GFPIVLHGSSSVPQEYVKTINEYG  240 (321)
T ss_pred             CHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC----CCCEEEeCCCCCcHHHHHHHHHhc
Confidence            6777777776  3786542  333411111 00  11234778888877763    3677766655              


Q ss_pred             ---------CcccHHHHHHcCCCEEEEcccccC
Q 029661          145 ---------GPKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       145 ---------~~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                               ..|.++++++.|+.-|=++|.+..
T Consensus       241 ~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~  273 (321)
T PRK07084        241 GKLKDAIGIPEEQLRKAAKSAVCKINIDSDGRL  273 (321)
T ss_pred             CccccCCCCCHHHHHHHHHcCCceeccchHHHH
Confidence                     468999999999999999998754

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=95.27  E-value=1.4  Score=36.35  Aligned_cols=152  Identities=19%  Similarity=0.224  Sum_probs=82.7

Q ss_pred             CccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcch--------HHHHHHHHHHh
Q 029661            2 DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH--------LHRTLNQIKDL   73 (190)
Q Consensus         2 Dg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~--------~~~~i~~i~~~   73 (190)
                      ||.+.||..|+.+...+|                    .+.+.++|+|.|=+..-+.+..+        ..+.++.+.+.
T Consensus         8 DG~q~~~~~f~~~~~~~i--------------------a~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~   67 (266)
T cd07944           8 DGGYVNNWDFGDEFVKAI--------------------YRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGD   67 (266)
T ss_pred             cCccccCccCCHHHHHHH--------------------HHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhh
Confidence            888899988888766544                    45567778888766422111111        13445555443


Q ss_pred             ---CCcEEEEEcCCC-CHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCe--EEEeCCCCc
Q 029661           74 ---GAKAGVVLNPAT-SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW--IEVDGGVGP  146 (190)
Q Consensus        74 ---g~~~g~~i~p~t-~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~--i~vdGGI~~  146 (190)
                         +.++...+.+.. ..+.+....+. +|.|-+ +    +     ....++++.+.-++.++++..+.  ++-..+.++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri-~----~-----~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~  137 (266)
T cd07944          68 SKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRV-A----F-----HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSD  137 (266)
T ss_pred             hccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEE-e----c-----ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCH
Confidence               567777776653 45666665543 666533 1    1     11235555555555555554333  334466665


Q ss_pred             c----cHHHHHHcCCCEEEEc-cc-ccCCCCHHHHHHHHHHhh
Q 029661          147 K----NAYKVIEAGANALVAG-SA-VFGAKDYAEAIKGIKTSK  183 (190)
Q Consensus       147 e----~~~~~~~aGad~~VvG-sa-I~~~~dp~~~~~~l~~~~  183 (190)
                      +    .++.+.++|+|.+.+. |. +..-.+..+.++.+++.+
T Consensus       138 ~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~  180 (266)
T cd07944         138 EELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNL  180 (266)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhc
Confidence            4    4556678899988665 22 222223334445555444

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=95.26  E-value=0.18  Score=41.15  Aligned_cols=140  Identities=13%  Similarity=0.164  Sum_probs=79.1

Q ss_pred             HHHHHhccCCCCcEEEEEee--cChH---HHHHHHHHcCCCEEEE--------cc---cC--CCcchHHHHHHHHHHh--
Q 029661           14 LVVDALRPVTDLPLDVHLMI--VEPE---QRVPDFIKAGADIVSV--------HC---EQ--SSTIHLHRTLNQIKDL--   73 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv--~dp~---~~i~~~~~~Gad~v~v--------h~---e~--~~~~~~~~~i~~i~~~--   73 (190)
                      ..++.|.+.++.|+.+|+-.  .++.   +.++.+.++|+++|.+        ..   +.  .+.++..+-++++++.  
T Consensus        59 ~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~  138 (243)
T cd00377          59 AAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD  138 (243)
T ss_pred             HHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh
Confidence            44555666678899999877  2443   3477888999999999        11   00  0233344455555552  


Q ss_pred             C-CcEEEEEc-----CC-CC----HHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE-
Q 029661           74 G-AKAGVVLN-----PA-TS----LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV-  140 (190)
Q Consensus        74 g-~~~g~~i~-----p~-t~----~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v-  140 (190)
                      + .++.+...     .. ..    +++.+.|.+. +|.+.+.+..           ..+.++++.+..     +.++.+ 
T Consensus       139 ~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~-----------~~~~~~~~~~~~-----~~Pl~~~  202 (243)
T cd00377         139 DLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK-----------DPEEIRAFAEAP-----DVPLNVN  202 (243)
T ss_pred             ccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHHHHhcC-----CCCEEEE
Confidence            3 23333322     11 12    3455566654 8988763222           223344444332     234333 


Q ss_pred             -eCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661          141 -DGGVGPKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       141 -dGGI~~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                       .++-+.-+..++.+.|++.++.|+..+.+
T Consensus       203 ~~~~~~~~~~~~l~~lG~~~v~~~~~~~~~  232 (243)
T cd00377         203 MTPGGNLLTVAELAELGVRRVSYGLALLRA  232 (243)
T ss_pred             ecCCCCCCCHHHHHHCCCeEEEEChHHHHH
Confidence             22222257788888999999999877663

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>KOG3055 consensus Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=95.19  E-value=0.026  Score=44.33  Aligned_cols=51  Identities=24%  Similarity=0.410  Sum_probs=40.8

Q ss_pred             eEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCH-HHHHHHHHHhhcccc
Q 029661          137 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDY-AEAIKGIKTSKRPQA  187 (190)
Q Consensus       137 ~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp-~~~~~~l~~~~~~~~  187 (190)
                      -++|.||||.+|.....+-||.-+||-|.+|+.... .+.++.+-+.+.+.|
T Consensus        84 ~LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~~g~fdL~RLk~i~s~~GKdR  135 (263)
T KOG3055|consen   84 GLQVGGGINSENCMSWLEEGASKVIVTSWLFNNGKFDLERLKDIVSIVGKDR  135 (263)
T ss_pred             ceeecCccChHHHHHHHHhcCceEEEEEEeccCCcccHHHHHHHHHHhCcce
Confidence            489999999999999999999999999999985432 256666666665544

>COG1891 Uncharacterized protein conserved in archaea [Function unknown]

Probab=95.18  E-value=0.94  Score=35.32  Aligned_cols=161  Identities=16%  Similarity=0.205  Sum_probs=90.4

Q ss_pred             ccccCcCCCCHHHHHHhccCCC--CcEEEEEee--cChHHH-HH--HHHHcCCCEEEEcccCC-----CcchHHHHHHHH
Q 029661            3 GRFVPNITIGPLVVDALRPVTD--LPLDVHLMI--VEPEQR-VP--DFIKAGADIVSVHCEQS-----STIHLHRTLNQI   70 (190)
Q Consensus         3 g~fvpn~~~G~~~v~~i~~~~~--~~i~~hlmv--~dp~~~-i~--~~~~~Gad~v~vh~e~~-----~~~~~~~~i~~i   70 (190)
                      |+.--||.+   .|+++|+.++  .++.+.+=-  ..|+.. ..  -++-+|||++-+..-..     ..+-...+.++.
T Consensus        32 GSLGANFPW---vIr~i~Ev~p~d~~vSAT~GDvpYKPGT~slAalGaav~GaDYiKVGLYg~kn~~eA~e~m~~vvrAV  108 (235)
T COG1891          32 GSLGANFPW---VIREIREVVPEDQEVSATVGDVPYKPGTASLAALGAAVAGADYIKVGLYGTKNEEEALEVMKNVVRAV  108 (235)
T ss_pred             CcccCCChH---HHHHHHHhCccceeeeeeecCCCCCCchHHHHHHHhHhhCCceEEEeecccccHHHHHHHHHHHHHHH
Confidence            444455544   6777877643  345442211  235543 22  24678999999964310     122344555666


Q ss_pred             HHhCC--cEEEE-------EcCCCCHHHHHHhh--cccceEEEEeeecCCCCc-ccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661           71 KDLGA--KAGVV-------LNPATSLSAIECVL--DVVDLVLIMSVNPGFGGQ-SFIESQVKKISDLRRMCLEKGVNPWI  138 (190)
Q Consensus        71 ~~~g~--~~g~~-------i~p~t~~~~~~~~~--~~~d~i~~m~v~pG~~gq-~~~~~~~~ki~~~~~~~~~~~~~~~i  138 (190)
                      |+.+-  ++.-+       ++.-.|+. +-+..  ..+|..++=+--  .+|. .|.-...+.+.+.-+...+++  +..
T Consensus       109 kd~d~~k~VVAaGYaDa~Rvgsv~Pl~-~P~vaa~ag~DvaMvDTai--KDGkslFdfm~~e~l~eFvd~Ah~hG--L~~  183 (235)
T COG1891         109 KDFDPSKKVVAAGYADAHRVGSVSPLL-LPEVAAEAGADVAMVDTAI--KDGKSLFDFMDEEELEEFVDLAHEHG--LEV  183 (235)
T ss_pred             hccCCCceEEeccccchhhccCcCccc-cHHHHHhcCCCEEEEeccc--ccchhHHhhhcHHHHHHHHHHHHHcc--hHH
Confidence            66543  32211       22223332 11222  236877653221  1232 355555666777777666665  456


Q ss_pred             EEeCCCCcccHHHHHHcCCCEEEEcccccCCCC
Q 029661          139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD  171 (190)
Q Consensus       139 ~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~d  171 (190)
                      +..|.++.|+++.+.+.|+|++=+-++.....|
T Consensus       184 AlAGs~~~ehlp~l~eig~DivGvRgaaC~~GD  216 (235)
T COG1891         184 ALAGSLKFEHLPILKEIGPDIVGVRGAACEGGD  216 (235)
T ss_pred             HhccccccccchHHHHhCCCeeeecchhccCCC
Confidence            789999999999999999998877677665433

>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase

Probab=95.17  E-value=0.067  Score=43.86  Aligned_cols=135  Identities=16%  Similarity=0.228  Sum_probs=77.4

Q ss_pred             CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE----EEEEcCCCCH
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA----GVVLNPATSL   87 (190)
Q Consensus        12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~----g~~i~p~t~~   87 (190)
                      |.++++++++.++.|+.-++|..+   .++.+.+. +|++=+.+..  ..+ .++++++-+.|+-+    |.+.+|..=+
T Consensus        61 GL~iL~~vk~~~glpvvTeV~~~~---~~~~vae~-vDilQIgArn--~rn-~~LL~a~g~t~kpV~lKrG~~~t~~e~l  133 (258)
T TIGR01362        61 GLKILQKVKEEFGVPILTDVHESS---QCEPVAEV-VDIIQIPAFL--CRQ-TDLLVAAAKTGRIVNVKKGQFLSPWDMK  133 (258)
T ss_pred             HHHHHHHHHHHhCCceEEEeCCHH---HHHHHHhh-CcEEEeCchh--cch-HHHHHHHhccCCeEEecCCCcCCHHHHH
Confidence            667788888889999999887654   56677777 8999999874  333 46788777776544    2333332112


Q ss_pred             HHHHHhhcc-cceEEEEeeecCCCCcccch--hh--HHHHHHHHHHHhhcCCCCeEEEe---------------CCCCc-
Q 029661           88 SAIECVLDV-VDLVLIMSVNPGFGGQSFIE--SQ--VKKISDLRRMCLEKGVNPWIEVD---------------GGVGP-  146 (190)
Q Consensus        88 ~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~--~~--~~ki~~~~~~~~~~~~~~~i~vd---------------GGI~~-  146 (190)
                      ..++++... -+.|++  .+=|++   |..  .+  +.-+-.+|++      ++++.+|               ||.+. 
T Consensus       134 ~aaeyi~~~Gn~~viL--cERG~t---f~y~r~~~D~~~ip~~k~~------~~PVi~DpSHsvq~pg~~g~~s~G~r~~  202 (258)
T TIGR01362       134 NVVEKVLSTGNKNILL--CERGTS---FGYNNLVVDMRSLPIMREL------GCPVIFDATHSVQQPGGLGGASGGLREF  202 (258)
T ss_pred             HHHHHHHHcCCCcEEE--EeCCCC---cCCCCcccchhhhHHHHhc------CCCEEEeCCccccCCCCCCCCCCCcHHH
Confidence            223333332 232322  344542   311  11  2223333332      4678877               44442 


Q ss_pred             --ccHHHHHHcCCCEEEEcc
Q 029661          147 --KNAYKVIEAGANALVAGS  164 (190)
Q Consensus       147 --e~~~~~~~aGad~~VvGs  164 (190)
                        .-.+..+.+|||++.+=+
T Consensus       203 v~~la~AAvA~GaDGl~iEv  222 (258)
T TIGR01362       203 VPTLARAAVAVGIDGLFMET  222 (258)
T ss_pred             HHHHHHHHHHhCCCEEEEEe
Confidence              244456889999998765

In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.

>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase

Probab=95.15  E-value=0.5  Score=38.36  Aligned_cols=145  Identities=17%  Similarity=0.258  Sum_probs=81.2

Q ss_pred             CCCCHHHHHHhccCCCCcEEEEEeec--ChHHHHHHHHHcCCCEEEEcccCCCcchH-HHHHHHHHHh-CCcEEEEEcCC
Q 029661            9 ITIGPLVVDALRPVTDLPLDVHLMIV--EPEQRVPDFIKAGADIVSVHCEQSSTIHL-HRTLNQIKDL-GAKAGVVLNPA   84 (190)
Q Consensus         9 ~~~G~~~v~~i~~~~~~~i~~hlmv~--dp~~~i~~~~~~Gad~v~vh~e~~~~~~~-~~~i~~i~~~-g~~~g~~i~p~   84 (190)
                      ++...+-|.-||+.-+        +.  ||-.....+.++|||+||+|.-- +..++ .+-+..+++. ..+.-+-.+|+
T Consensus         2 LgVNIdhVAtLRnaR~--------~~~Pd~v~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~l~~~~~~~lNlE~a~~   72 (237)
T TIGR00559         2 LGVNVDHIATLRNARG--------TNEPDPLRAALIAEQAGADGITVHLRE-DRRHIQDRDVYDLKEALTTPFNIEMAPT   72 (237)
T ss_pred             CccchhhhhhhhhcCC--------CCCCCHHHHHHHHHHcCCCEEEecCCC-CcCcCCHHHHHHHHHHcCCCEEeccCCC
Confidence            3445556666665421        22  45666777899999999999763 23333 2334444442 33444545543


Q ss_pred             CCHHHHHHhhc-ccceEEEEeeecC---C-CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCE
Q 029661           85 TSLSAIECVLD-VVDLVLIMSVNPG---F-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANA  159 (190)
Q Consensus        85 t~~~~~~~~~~-~~d~i~~m~v~pG---~-~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~  159 (190)
                      ...  +.-.++ ..|++.+..-.+.   + +|-.+ ....++++.+.+.+.+.|..+.+=+|.-  ++.++...+.|||.
T Consensus        73 ~em--i~ia~~vkP~~vtLVPEkr~ElTTegGldv-~~~~~~l~~~i~~l~~~gI~VSLFiDP~--~~qi~~A~~~GAd~  147 (237)
T TIGR00559        73 EEM--IRIAEEIKPEQVTLVPEARDEVTTEGGLDV-ARLKDKLCELVKRFHAAGIEVSLFIDAD--KDQISAAAEVGADR  147 (237)
T ss_pred             HHH--HHHHHHcCCCEEEECCCCCCCccCCcCchh-hhCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCE
Confidence            322  222222 3688877543332   1 23211 2334566666666666554444444443  67899999999999


Q ss_pred             EEEccccc
Q 029661          160 LVAGSAVF  167 (190)
Q Consensus       160 ~VvGsaI~  167 (190)
                      +=.=+.=|
T Consensus       148 VELhTG~Y  155 (237)
T TIGR00559       148 IEIHTGPY  155 (237)
T ss_pred             EEEechhh
Confidence            98766544

PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=95.12  E-value=0.59  Score=40.58  Aligned_cols=114  Identities=23%  Similarity=0.191  Sum_probs=74.0

Q ss_pred             HHHHHHHHHcCCCEEEEcccCCCc---------------chHHHHHHHHHHhCCcEEEEEc--CCCCHHHHHHhhcc---
Q 029661           37 EQRVPDFIKAGADIVSVHCEQSST---------------IHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV---   96 (190)
Q Consensus        37 ~~~i~~~~~~Gad~v~vh~e~~~~---------------~~~~~~i~~i~~~g~~~g~~i~--p~t~~~~~~~~~~~---   96 (190)
                      ..-++.+.++|++.|.+-... +.               +.+.+.++.+++.|.++.+...  ..++.+.+.+++..   
T Consensus        78 ~~di~~a~~~g~~~i~i~~~~-Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~  156 (378)
T PRK11858         78 KSDIDASIDCGVDAVHIFIAT-SDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEE  156 (378)
T ss_pred             HHHHHHHHhCCcCEEEEEEcC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHh
Confidence            345788899999998885433 12               3456788899999998877543  33556666655532   


Q ss_pred             --cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661           97 --VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        97 --~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~  160 (190)
                        +|.|.+    +.+.|...+.++.+.++.+++..     +.+|++    |-|.-.-|.-..+++||+.+
T Consensus       157 ~Ga~~I~l----~DT~G~~~P~~v~~lv~~l~~~~-----~~~l~~H~Hnd~GlA~AN~laAv~aGa~~v  217 (378)
T PRK11858        157 AGADRVRF----CDTVGILDPFTMYELVKELVEAV-----DIPIEVHCHNDFGMATANALAGIEAGAKQV  217 (378)
T ss_pred             CCCCEEEE----eccCCCCCHHHHHHHHHHHHHhc-----CCeEEEEecCCcCHHHHHHHHHHHcCCCEE
Confidence              566543    34445555666677777777654     245554    44555556677789999976

>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E

Probab=95.09  E-value=0.84  Score=39.34  Aligned_cols=153  Identities=12%  Similarity=0.096  Sum_probs=92.4

Q ss_pred             HHHHHhccCCCCcEEEEEeecChH--HHHHHHHHcC-----------CCEEEEcccCCCc-ch---HHHHHHHHHHhCCc
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPE--QRVPDFIKAG-----------ADIVSVHCEQSST-IH---LHRTLNQIKDLGAK   76 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~--~~i~~~~~~G-----------ad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~   76 (190)
                      ..++.+.+..++|+.+||==....  ++++.+.++|           .++|-+=....+. ++   -.++++.++..|+.
T Consensus        89 ~~v~~~Ae~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~Gvs  168 (357)
T TIGR01520        89 HHVHSIAEHYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMW  168 (357)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence            355556555688999998554333  5688888886           6777664332111 22   35677777777765


Q ss_pred             E----EEE--------E------cCCCCHHHHHHhhc------ccceEE--EEeeecCCCCcccchhhHHHHHHHHHHHh
Q 029661           77 A----GVV--------L------NPATSLSAIECVLD------VVDLVL--IMSVNPGFGGQSFIESQVKKISDLRRMCL  130 (190)
Q Consensus        77 ~----g~~--------i------~p~t~~~~~~~~~~------~~d~i~--~m~v~pG~~gq~~~~~~~~ki~~~~~~~~  130 (190)
                      +    |-.        .      ..-|..+..+++.+      .+|.+.  +-++| |.....-..-.+++++++++.+.
T Consensus       169 VEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~H-G~Yk~~~p~Ld~d~L~~I~~~~~  247 (357)
T TIGR01520       169 LEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVH-GVYKPGNVKLTPDILADGQEYVS  247 (357)
T ss_pred             EEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeecccc-CCcCCCCCccCHHHHHHHHHHHH
Confidence            4    211        1      11366777777765      457653  34455 32210012233667777765432


Q ss_pred             hcCCCCe------EEEeCCCC--cccHHHHHHcCCCEEEEcccccC
Q 029661          131 EKGVNPW------IEVDGGVG--PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       131 ~~~~~~~------i~vdGGI~--~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      +. .+++      +..=||-.  .+.++++++.|..-+=++|.+..
T Consensus       248 ~~-~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI~KINi~Tdl~~  292 (357)
T TIGR01520       248 EK-LGLPAAKPLFFVFHGGSGSTKQEIKEALSYGVVKMNIDTDTQW  292 (357)
T ss_pred             Hh-cCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHH
Confidence            11 1234      88888766  58999999999999999987754

coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.

>PRK05265 pyridoxine 5'-phosphate synthase; Provisional

Probab=95.09  E-value=0.54  Score=38.20  Aligned_cols=147  Identities=16%  Similarity=0.246  Sum_probs=81.0

Q ss_pred             CCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchH-HHHHHHHHHh-CCcEEEEEcCCCC
Q 029661            9 ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHL-HRTLNQIKDL-GAKAGVVLNPATS   86 (190)
Q Consensus         9 ~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~-~~~i~~i~~~-g~~~g~~i~p~t~   86 (190)
                      ++...+-|.-||+.-+.      -.-||......+.++|||+||+|.-- +..++ .+-+..+++. ..+.-+-.+|...
T Consensus         5 LgVNIdhvAtLRnaR~~------~~Pd~v~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~~~e   77 (239)
T PRK05265          5 LGVNIDHIATLRNARGT------NYPDPVRAALIAEQAGADGITVHLRE-DRRHIRDRDVRLLRETLKTELNLEMAATEE   77 (239)
T ss_pred             EEeehhhheeccccCCC------CCCCHHHHHHHHHHcCCCEEEecCCC-CcccCCHHHHHHHHHhcCCCEEeccCCCHH
Confidence            44455566666653210      01256667778899999999999763 22232 2233344432 2344444444322


Q ss_pred             HHHHHHhhc-ccceEEEEeeecC---C-CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEE
Q 029661           87 LSAIECVLD-VVDLVLIMSVNPG---F-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV  161 (190)
Q Consensus        87 ~~~~~~~~~-~~d~i~~m~v~pG---~-~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~V  161 (190)
                        .+.-.++ ..|++.+..-.+.   + +|-. .....++++.+.+.+.+.|..+.+=+|  =+++.++...+.|||.+=
T Consensus        78 --m~~ia~~~kP~~vtLVPE~r~E~TTegGld-v~~~~~~l~~~i~~L~~~gIrVSLFid--P~~~qi~~A~~~GAd~VE  152 (239)
T PRK05265         78 --MLDIALEVKPHQVTLVPEKREELTTEGGLD-VAGQFDKLKPAIARLKDAGIRVSLFID--PDPEQIEAAAEVGADRIE  152 (239)
T ss_pred             --HHHHHHHCCCCEEEECCCCCCCccCCccch-hhcCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEE
Confidence              2222222 3688876433321   1 2211 233356666666666665544445465  356889999999999998


Q ss_pred             Eccccc
Q 029661          162 AGSAVF  167 (190)
Q Consensus       162 vGsaI~  167 (190)
                      .=+.=|
T Consensus       153 LhTG~y  158 (239)
T PRK05265        153 LHTGPY  158 (239)
T ss_pred             Eechhh
Confidence            765444

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=95.06  E-value=0.86  Score=37.42  Aligned_cols=140  Identities=15%  Similarity=0.106  Sum_probs=79.6

Q ss_pred             CCHHHHHHhcc---CCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEc-CCCC
Q 029661           11 IGPLVVDALRP---VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN-PATS   86 (190)
Q Consensus        11 ~G~~~v~~i~~---~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~-p~t~   86 (190)
                      +|.+-++.|++   ..++++....+-..   .++.+.+ .+|++-+....  ..+ ..+++++-+.|+.+.+.-. ..|+
T Consensus        63 ~G~~gl~~L~~~~~~~Gl~~~Tev~d~~---~v~~~~e-~vdilqIgs~~--~~n-~~LL~~va~tgkPVilk~G~~~t~  135 (250)
T PRK13397         63 LGLQGIRYLHEVCQEFGLLSVSEIMSER---QLEEAYD-YLDVIQVGARN--MQN-FEFLKTLSHIDKPILFKRGLMATI  135 (250)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEeeCCHH---HHHHHHh-cCCEEEECccc--ccC-HHHHHHHHccCCeEEEeCCCCCCH
Confidence            35555665554   47888887555433   4556666 59999998764  333 4688888888887777766 3344


Q ss_pred             HHHH--HHhhcc---cceEEEE-eeecCCCCcccc-hhhHHHHHHHHHHHhhcCCCCeEEEe----CCCCc---ccHHHH
Q 029661           87 LSAI--ECVLDV---VDLVLIM-SVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVD----GGVGP---KNAYKV  152 (190)
Q Consensus        87 ~~~~--~~~~~~---~d~i~~m-~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vd----GGI~~---e~~~~~  152 (190)
                      -++.  .+++..   -++++.- ++ -++.. ... .--+.-|..+|+..     +++|.+|    +|.+.   ......
T Consensus       136 ~e~~~A~e~i~~~Gn~~i~L~eRg~-~~Y~~-~~~n~~dl~ai~~lk~~~-----~lPVivd~SHs~G~r~~v~~~a~AA  208 (250)
T PRK13397        136 EEYLGALSYLQDTGKSNIILCERGV-RGYDV-ETRNMLDIMAVPIIQQKT-----DLPIIVDVSHSTGRRDLLLPAAKIA  208 (250)
T ss_pred             HHHHHHHHHHHHcCCCeEEEEcccc-CCCCC-ccccccCHHHHHHHHHHh-----CCCeEECCCCCCcccchHHHHHHHH
Confidence            3321  222221   2444443 33 23321 111 11234455555443     4677777    55542   345567


Q ss_pred             HHcCCCEEEEcc
Q 029661          153 IEAGANALVAGS  164 (190)
Q Consensus       153 ~~aGad~~VvGs  164 (190)
                      +.+|||++++-+
T Consensus       209 vA~GAdGl~IE~  220 (250)
T PRK13397        209 KAVGANGIMMEV  220 (250)
T ss_pred             HHhCCCEEEEEe
Confidence            889999988775

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.05  E-value=0.18  Score=43.62  Aligned_cols=29  Identities=24%  Similarity=0.376  Sum_probs=23.2

Q ss_pred             CCeEEEeCCCC-cccHHHHHHcCCCEEEEcc
Q 029661          135 NPWIEVDGGVG-PKNAYKVIEAGANALVAGS  164 (190)
Q Consensus       135 ~~~i~vdGGI~-~e~~~~~~~aGad~~VvGs  164 (190)
                      ++++.+ |++. .+.+..+.++|||++.+|+
T Consensus       187 ~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~  216 (368)
T PRK08649        187 DVPVIV-GGCVTYTTALHLMRTGAAGVLVGI  216 (368)
T ss_pred             CCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence            356655 5565 7899999999999999994

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=95.05  E-value=0.082  Score=52.07  Aligned_cols=141  Identities=15%  Similarity=0.150  Sum_probs=91.3

Q ss_pred             HHHHHHhccC-CCCcEEEEEeecC-------h----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661           13 PLVVDALRPV-TDLPLDVHLMIVE-------P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        13 ~~~v~~i~~~-~~~~i~~hlmv~d-------p----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~   80 (190)
                      .+-++.+|+. ++.++..-|-=.|       |    ..|++.+++.|.|.+-+-..-...+++...++++|+.|..+..+
T Consensus       592 werl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~  671 (1143)
T TIGR01235       592 WERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAA  671 (1143)
T ss_pred             HHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEE
Confidence            3567788875 8878775443334       3    35777889999999888432213567889999999999998766


Q ss_pred             EcCC-------C---CHHHHHHhh----c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----e
Q 029661           81 LNPA-------T---SLSAIECVL----D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----D  141 (190)
Q Consensus        81 i~p~-------t---~~~~~~~~~----~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----d  141 (190)
                      |+-.       .   +++.+.++.    + .+|.|.+    ....|......+.+.++.+|+..     +.+|.+    +
T Consensus       672 i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~i----kDt~Gll~P~~~~~Lv~~lk~~~-----~~pi~~H~Hdt  742 (1143)
T TIGR01235       672 ICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGI----KDMAGLLKPAAAKLLIKALREKT-----DLPIHFHTHDT  742 (1143)
T ss_pred             EEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEE----CCCcCCcCHHHHHHHHHHHHHhc-----CCeEEEEECCC
Confidence            5532       2   233333332    2 2565543    34456555566677777777654     245554    4


Q ss_pred             CCCCcccHHHHHHcCCCEEEE
Q 029661          142 GGVGPKNAYKVIEAGANALVA  162 (190)
Q Consensus       142 GGI~~e~~~~~~~aGad~~Vv  162 (190)
                      -|....|.-..+++|||++=+
T Consensus       743 ~Gla~an~laA~eaGad~vD~  763 (1143)
T TIGR01235       743 SGIAVASMLAAVEAGVDVVDV  763 (1143)
T ss_pred             CCcHHHHHHHHHHhCCCEEEe
Confidence            566667777889999998643

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=95.01  E-value=0.88  Score=39.13  Aligned_cols=150  Identities=13%  Similarity=0.105  Sum_probs=95.3

Q ss_pred             HHHHHhccCC-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------C-cch---HHHHHHHHHHhCCcE----
Q 029661           14 LVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------S-TIH---LHRTLNQIKDLGAKA----   77 (190)
Q Consensus        14 ~~v~~i~~~~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------~-~~~---~~~~i~~i~~~g~~~----   77 (190)
                      ..++...+.. .+|+-+||==..-.+.+..+.++|.+.|-+=....       + .++   -.++++.++..|+.+    
T Consensus        64 ~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaEL  143 (347)
T PRK09196         64 HLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGEL  143 (347)
T ss_pred             HHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence            3455554444 48999998554344568889999999998854421       1 122   256777788777655    


Q ss_pred             EEE--E--------------------cCCCCHHHHHHhhc--ccceEE--EEeeecCCCCcccch----hhHHHHHHHHH
Q 029661           78 GVV--L--------------------NPATSLSAIECVLD--VVDLVL--IMSVNPGFGGQSFIE----SQVKKISDLRR  127 (190)
Q Consensus        78 g~~--i--------------------~p~t~~~~~~~~~~--~~d~i~--~m~v~pG~~gq~~~~----~~~~ki~~~~~  127 (190)
                      |-.  .                    ..-|..+...++.+  .+|.+.  +-++| |...+...|    --+++++++++
T Consensus       144 G~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~H-G~Yk~~~~p~~~~LdfdrL~eI~~  222 (347)
T PRK09196        144 GCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSH-GAYKFTRKPTGDVLAIDRIKEIHA  222 (347)
T ss_pred             eeccCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhcccc-CCCCCCCCCChhhccHHHHHHHHh
Confidence            221  1                    01356777777775  378764  33444 222111112    24677877777


Q ss_pred             HHhhcCCCCeEEEeCCC-----------------------CcccHHHHHHcCCCEEEEcccccC
Q 029661          128 MCLEKGVNPWIEVDGGV-----------------------GPKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       128 ~~~~~~~~~~i~vdGGI-----------------------~~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      ..+    ++++..=||-                       ..+.++++++.|+.-|=++|.+..
T Consensus       223 ~v~----~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~  282 (347)
T PRK09196        223 RLP----NTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRL  282 (347)
T ss_pred             cCC----CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHH
Confidence            652    3678888877                       448899999999999999998764

>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family

Probab=94.99  E-value=1.5  Score=35.13  Aligned_cols=159  Identities=13%  Similarity=0.114  Sum_probs=93.8

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHH---HHHcCCCEEE-EcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPD---FIKAGADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA   89 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~---~~~~Gad~v~-vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~   89 (190)
                      +.+++|++.-+-++.+-..-.|.+..+++   +.+.+-+.++ ++.-    ..--+.++.+++.|+++-+..-- +..+.
T Consensus        41 ~~~~~i~~~~~g~vs~qv~~~~~~~mi~~a~~l~~~~~~i~iKIP~T----~~Gl~A~~~L~~~Gi~v~~T~vf-s~~Qa  115 (213)
T TIGR00875        41 EVLKEIQEAVEGPVSAETISLDAEGMVEEAKELAKLAPNIVVKIPMT----SEGLKAVKILKKEGIKTNVTLVF-SAAQA  115 (213)
T ss_pred             HHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHHHHhCCCeEEEeCCC----HHHHHHHHHHHHCCCceeEEEec-CHHHH
Confidence            34555555434466665666676655443   4444545333 3321    22345677777788887664421 12222


Q ss_pred             HHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccC-
Q 029661           90 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG-  168 (190)
Q Consensus        90 ~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~-  168 (190)
                      +.-....+|||..   .-|--.. ......+.++++++++..++++.+|-+..=-|.+++-++..+|+|.+-++-.+++ 
T Consensus       116 ~~Aa~aGa~yisp---yvgRi~d-~g~dg~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~d~vTip~~vl~~  191 (213)
T TIGR00875       116 LLAAKAGATYVSP---FVGRLDD-IGGDGMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVMQQ  191 (213)
T ss_pred             HHHHHcCCCEEEe---ecchHHH-cCCCHHHHHHHHHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCCCEEEcCHHHHHH
Confidence            2222235777742   2232111 1123477788889998877788888665555589999999999999999977664 


Q ss_pred             ---CCCHHHHHHHHHH
Q 029661          169 ---AKDYAEAIKGIKT  181 (190)
Q Consensus       169 ---~~dp~~~~~~l~~  181 (190)
                         .+-...+++.+.+
T Consensus       192 l~~~p~t~~~~~~F~~  207 (213)
T TIGR00875       192 LFNHPLTDIGLERFLK  207 (213)
T ss_pred             HHcCCchHHHHHHHHH
Confidence               3555666666654

This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.

>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family

Probab=94.96  E-value=0.12  Score=40.10  Aligned_cols=126  Identities=20%  Similarity=0.261  Sum_probs=69.9

Q ss_pred             HHHHHHhccCCCCcEEEEEeecC---hHH-HHHHHHHcC-CCEEEEcccCCCcchHHHHHHHHHHhCCcEEE--EEcCCC
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVE---PEQ-RVPDFIKAG-ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV--VLNPAT   85 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~d---p~~-~i~~~~~~G-ad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~--~i~p~t   85 (190)
                      ++.++.+++ .++.+.+|+=.-+   ..+ -++.+++.+ +|+|+--        -...++.+|+.|+....  ++-.+.
T Consensus        34 ~~~v~~~~~-~gK~vfVHiDli~Gl~~D~~~i~~L~~~~~~dGIIST--------k~~~i~~Ak~~gl~tIqRiFliDS~  104 (175)
T PF04309_consen   34 KDIVKRLKA-AGKKVFVHIDLIEGLSRDEAGIEYLKEYGKPDGIIST--------KSNLIKRAKKLGLLTIQRIFLIDSS  104 (175)
T ss_dssp             HHHHHHHHH-TT-EEEEECCGEETB-SSHHHHHHHHHTT--SEEEES--------SHHHHHHHHHTT-EEEEEEE-SSHH
T ss_pred             HHHHHHHHH-cCCEEEEEehhcCCCCCCHHHHHHHHHcCCCcEEEeC--------CHHHHHHHHHcCCEEEEEeeeecHH
Confidence            456666666 3555555553321   122 356666666 7877632        23578999999998864  444444


Q ss_pred             CHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661           86 SLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA  162 (190)
Q Consensus        86 ~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv  162 (190)
                      .++...+.+.  ..|.|-+|   ||.     .|..+   +++++.     .+++|-.+|=|+ .|.+.++.++||+.+-.
T Consensus       105 al~~~~~~i~~~~PD~vEil---Pg~-----~p~vi---~~i~~~-----~~~PiIAGGLI~~~e~v~~al~aGa~aVST  168 (175)
T PF04309_consen  105 ALETGIKQIEQSKPDAVEIL---PGV-----MPKVI---KKIREE-----TNIPIIAGGLIRTKEDVEEALKAGADAVST  168 (175)
T ss_dssp             HHHHHHHHHHHHT-SEEEEE---SCC-----HHHHH---CCCCCC-----CSS-EEEESS--SHHHHHHHCCTTCEEEEE
T ss_pred             HHHHHHHHHhhcCCCEEEEc---hHH-----HHHHH---HHHHHh-----cCCCEEeecccCCHHHHHHHHHcCCEEEEc
Confidence            4555444443  47999775   772     23333   222222     346785555566 68999999999998765


Q ss_pred             c
Q 029661          163 G  163 (190)
Q Consensus       163 G  163 (190)
                      +
T Consensus       169 S  169 (175)
T PF04309_consen  169 S  169 (175)
T ss_dssp             -
T ss_pred             C
Confidence            5

Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.

>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism

Probab=94.94  E-value=0.61  Score=37.79  Aligned_cols=146  Identities=19%  Similarity=0.285  Sum_probs=80.4

Q ss_pred             CCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchH-HHHHHHHHHh-CCcEEEEEcCCCCH
Q 029661           10 TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHL-HRTLNQIKDL-GAKAGVVLNPATSL   87 (190)
Q Consensus        10 ~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~-~~~i~~i~~~-g~~~g~~i~p~t~~   87 (190)
                      +...+-|.-||+.-+.      ---||......+.++|||+||+|.-- +..++ .+-+..+++. ..+.-+-.+|+.  
T Consensus         3 gVNIdhvAtLRnaR~~------~~Pdpv~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~--   73 (234)
T cd00003           3 GVNIDHVATLRNARGT------NYPDPVEAALLAEKAGADGITVHLRE-DRRHIQDRDVRLLRELVRTELNLEMAPTE--   73 (234)
T ss_pred             ccchhhhhhhhhcCCC------CCCCHHHHHHHHHHcCCCEEEecCCC-CcCcCCHHHHHHHHHHcCCCEEeccCCCH--
Confidence            4445556666654210      01256667778899999999999763 22232 2333344432 234444444422  


Q ss_pred             HHHHHhhc-ccceEEEEeeecC---C-CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEE
Q 029661           88 SAIECVLD-VVDLVLIMSVNPG---F-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVA  162 (190)
Q Consensus        88 ~~~~~~~~-~~d~i~~m~v~pG---~-~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~Vv  162 (190)
                      +.+.-.++ ..|++.+..-.+.   + +|-. .....++++.+.+.+.+.+..+.+=+|.-  ++.++...+.|||.+=.
T Consensus        74 em~~ia~~~kP~~vtLVPEkr~E~TTegGld-v~~~~~~l~~~i~~l~~~gI~VSLFiDPd--~~qi~~A~~~GAd~VEL  150 (234)
T cd00003          74 EMLEIALEVKPHQVTLVPEKREELTTEGGLD-VAGQAEKLKPIIERLKDAGIRVSLFIDPD--PEQIEAAKEVGADRVEL  150 (234)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCccCCccch-hhcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEE
Confidence            22222222 3688876433221   1 2211 12334566666666666554444445553  67899999999999988


Q ss_pred             ccccc
Q 029661          163 GSAVF  167 (190)
Q Consensus       163 GsaI~  167 (190)
                      =+.=|
T Consensus       151 hTG~Y  155 (234)
T cd00003         151 HTGPY  155 (234)
T ss_pred             echhh
Confidence            76544

In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=94.90  E-value=0.2  Score=41.75  Aligned_cols=86  Identities=13%  Similarity=0.174  Sum_probs=64.3

Q ss_pred             HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHH
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC   92 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~   92 (190)
                      +.++.+|+. ++.++.+.+-  + .+-.+.+.++|+|.|.+|-..  .+++.+.++.+++.+.++.+..+-.-..+.+.+
T Consensus       177 ~av~~~r~~~~~~kIeVEv~--t-leea~ea~~~GaDiI~lDn~~--~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~  251 (277)
T TIGR01334       177 GAIGRLKQTAPERKITVEAD--T-IEQALTVLQASPDILQLDKFT--PQQLHHLHERLKFFDHIPTLAAAGGINPENIAD  251 (277)
T ss_pred             HHHHHHHHhCCCCCEEEECC--C-HHHHHHHHHcCcCEEEECCCC--HHHHHHHHHHHhccCCCEEEEEECCCCHHHHHH
Confidence            567777764 5566666443  3 335566789999999999764  677888888888767788888888888888888


Q ss_pred             hhcc-cceEEEEe
Q 029661           93 VLDV-VDLVLIMS  104 (190)
Q Consensus        93 ~~~~-~d~i~~m~  104 (190)
                      |... +|+|..-+
T Consensus       252 ya~~GvD~is~ga  264 (277)
T TIGR01334       252 YIEAGIDLFITSA  264 (277)
T ss_pred             HHhcCCCEEEeCc
Confidence            8765 89986533

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=94.83  E-value=1.8  Score=35.65  Aligned_cols=121  Identities=15%  Similarity=0.161  Sum_probs=68.8

Q ss_pred             HHHHHHHHcCCCEEEEc-ccCCCcchHHHHHHHHHHhCCcEEEE--EcCCCCHHHHHHhhc-ccceEEE-EeeecCC---
Q 029661           38 QRVPDFIKAGADIVSVH-CEQSSTIHLHRTLNQIKDLGAKAGVV--LNPATSLSAIECVLD-VVDLVLI-MSVNPGF---  109 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh-~e~~~~~~~~~~i~~i~~~g~~~g~~--i~p~t~~~~~~~~~~-~~d~i~~-m~v~pG~---  109 (190)
                      ++++.+.++|.+.|=+. +-.  .++..+.++.+.+.+.+..+.  +.+  ..+.++..++ .+|.|-+ +++.+..   
T Consensus        26 ~i~~~L~~~Gv~~IEvG~P~~--~~~~~~~~~~l~~~~~~~~v~~~~r~--~~~di~~a~~~g~~~i~i~~~~S~~~~~~  101 (262)
T cd07948          26 EIAKALDAFGVDYIELTSPAA--SPQSRADCEAIAKLGLKAKILTHIRC--HMDDARIAVETGVDGVDLVFGTSPFLREA  101 (262)
T ss_pred             HHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHHHhCCCCCcEEEEecC--CHHHHHHHHHcCcCEEEEEEecCHHHHHH
Confidence            46788999999999883 322  334555666666655544442  332  2333444443 3676543 3333221   


Q ss_pred             -CCcccchhhHHHHHHHHHHHhhcCCCCeEE--EeCCCCcccH----HHHHHcCCCEEEEc
Q 029661          110 -GGQSFIESQVKKISDLRRMCLEKGVNPWIE--VDGGVGPKNA----YKVIEAGANALVAG  163 (190)
Q Consensus       110 -~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~--vdGGI~~e~~----~~~~~aGad~~VvG  163 (190)
                       -+. -.++.++++.++.++..+.+..+.+.  -.++.+++.+    +.+.++|+|.+.+.
T Consensus       102 ~~~~-~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~  161 (262)
T cd07948         102 SHGK-SITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIA  161 (262)
T ss_pred             HhCC-CHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence             111 13566777777777776666544433  3455555544    56677899987766

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>PRK09197 fructose-bisphosphate aldolase; Provisional

Probab=94.79  E-value=1  Score=38.74  Aligned_cols=154  Identities=12%  Similarity=0.125  Sum_probs=95.5

Q ss_pred             HHHHHhccCCCCcEEEEEeecCh--HHHHHHHHHcC-----------CCEEEEcccCCCc-chH---HHHHHHHHHhCCc
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEP--EQRVPDFIKAG-----------ADIVSVHCEQSST-IHL---HRTLNQIKDLGAK   76 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp--~~~i~~~~~~G-----------ad~v~vh~e~~~~-~~~---~~~i~~i~~~g~~   76 (190)
                      ..++.+.+..++|+-+||==...  .++++.+.++|           .+.|-+=....+. +++   .++++.++.+|+.
T Consensus        82 ~~v~~~A~~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~Gvs  161 (350)
T PRK09197         82 KHVHEVAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMT  161 (350)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence            45555555578999999855433  45777777777           7877764432221 222   4567778877765


Q ss_pred             E----EEE------E--------cCCCCHHHHHHhhcc--c----ceEE--EEeeecCCCCcccchhhHHHHHHHHHHHh
Q 029661           77 A----GVV------L--------NPATSLSAIECVLDV--V----DLVL--IMSVNPGFGGQSFIESQVKKISDLRRMCL  130 (190)
Q Consensus        77 ~----g~~------i--------~p~t~~~~~~~~~~~--~----d~i~--~m~v~pG~~gq~~~~~~~~ki~~~~~~~~  130 (190)
                      +    |-.      .        ..-|..+..+++.+.  +    |.+.  +-++| |...+.-..-.+++++++++.+.
T Consensus       162 VEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~H-G~Yk~~~p~Ld~e~L~~I~~~v~  240 (350)
T PRK09197        162 LEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVH-GVYKPGNVKLRPEILKDSQEYVS  240 (350)
T ss_pred             EEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeeccccc-CCcCCCCCccCHHHHHHHHHHHH
Confidence            4    221      1        113667777777764  3    5443  23344 22211012234778888888774


Q ss_pred             hc-C---CCCeEEEeCCCC--cccHHHHHHcCCCEEEEcccccC
Q 029661          131 EK-G---VNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       131 ~~-~---~~~~i~vdGGI~--~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      +. +   .++++..=||-.  .+.++++++.|..-+=++|.+..
T Consensus       241 ~~~~~~~~~vPLVLHGgSGipde~i~~ai~~GI~KINi~T~l~~  284 (350)
T PRK09197        241 KKFGLPAKPFDFVFHGGSGSTLEEIREAVSYGVVKMNIDTDTQW  284 (350)
T ss_pred             HhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCCCeeEEeCcHHHH
Confidence            22 1   147888888766  58999999999999999987753

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated

Probab=94.79  E-value=0.45  Score=39.23  Aligned_cols=137  Identities=16%  Similarity=0.248  Sum_probs=73.6

Q ss_pred             HHHHhccCCCCcEEEEEeecChHHHHHHHHHc--CCCEEEEc-ccCCCcchHHHHHHHHHHhCCcEEEEEc--CCCC---
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA--GADIVSVH-CEQSSTIHLHRTLNQIKDLGAKAGVVLN--PATS---   86 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~--Gad~v~vh-~e~~~~~~~~~~i~~i~~~g~~~g~~i~--p~t~---   86 (190)
                      .|+.+++.++.|+.+  -+.+|. .++.+.++  |+++|.=- .+   .+...+.+..++++|..+.+...  ..+|   
T Consensus        60 ~v~~l~~~~~~plsI--DT~~~~-v~eaaL~~~~G~~iINsIs~~---~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~  133 (261)
T PRK07535         60 LVETVQEVVDVPLCI--DSPNPA-AIEAGLKVAKGPPLINSVSAE---GEKLEVVLPLVKKYNAPVVALTMDDTGIPKDA  133 (261)
T ss_pred             HHHHHHHhCCCCEEE--eCCCHH-HHHHHHHhCCCCCEEEeCCCC---CccCHHHHHHHHHhCCCEEEEecCCCCCCCCH
Confidence            566676656778765  345665 44556666  98876532 22   12245778889999998877544  2223   


Q ss_pred             ---HHHHHHhhcc-----c--ceEEEEeeecCCC----CcccchhhHHHHHHHHHHHhhcCCCCeEE---EeCCCCcc--
Q 029661           87 ---LSAIECVLDV-----V--DLVLIMSVNPGFG----GQSFIESQVKKISDLRRMCLEKGVNPWIE---VDGGVGPK--  147 (190)
Q Consensus        87 ---~~~~~~~~~~-----~--d~i~~m~v~pG~~----gq~~~~~~~~ki~~~~~~~~~~~~~~~i~---vdGGI~~e--  147 (190)
                         .+.+++.++.     +  +.|+   ++||++    ++...-++++.++++++..+  +....+.   +.+|+ ++  
T Consensus       134 ~~~~~~l~~~v~~a~~~GI~~~~Ii---lDPgi~~~~~~~~~~~~~l~~i~~l~~~~p--g~p~l~G~Sn~Sfgl-p~r~  207 (261)
T PRK07535        134 EDRLAVAKELVEKADEYGIPPEDIY---IDPLVLPLSAAQDAGPEVLETIRRIKELYP--KVHTTCGLSNISFGL-PNRK  207 (261)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHhHEE---EeCCCCcccCChHHHHHHHHHHHHHHHhCC--CCCEEEEeCCCccCC-cchH
Confidence               2333333321     2  2333   388876    22223344666666665542  2222222   34444 22  


Q ss_pred             -----cHHHHHHcCCCEEEEc
Q 029661          148 -----NAYKVIEAGANALVAG  163 (190)
Q Consensus       148 -----~~~~~~~aGad~~VvG  163 (190)
                           =+..+.++|.|..|+=
T Consensus       208 ~in~~fl~~a~~~Gl~~aI~n  228 (261)
T PRK07535        208 LINRAFLVMAMGAGMDSAILD  228 (261)
T ss_pred             HHHHHHHHHHHHcCCCEEeeC
Confidence                 2345678898866653

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=94.78  E-value=0.57  Score=40.43  Aligned_cols=114  Identities=18%  Similarity=0.167  Sum_probs=71.8

Q ss_pred             HHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHhCCcEEEEEc--CCCCHHHHHHhhcc-----
Q 029661           38 QRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----   96 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~g~~~g~~i~--p~t~~~~~~~~~~~-----   96 (190)
                      +-++.+.++|++.|.+..-..              ..+...+.++.+|+.|.++.+.+.  ..++.+.+.+++..     
T Consensus        75 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g  154 (363)
T TIGR02090        75 KDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAG  154 (363)
T ss_pred             HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCC
Confidence            347888999999988832210              013355788889999998876543  33556655555432     


Q ss_pred             cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661           97 VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        97 ~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~  160 (190)
                      +|.|.+    +.+.|...+..+.+.++.+++..+     .++++    |-|....|.-..+++||+.+
T Consensus       155 ~~~i~l----~DT~G~~~P~~v~~li~~l~~~~~-----~~l~~H~Hnd~GlA~AN~laA~~aGa~~v  213 (363)
T TIGR02090       155 ADRINI----ADTVGVLTPQKMEELIKKLKENVK-----LPISVHCHNDFGLATANSIAGVKAGAEQV  213 (363)
T ss_pred             CCEEEE----eCCCCccCHHHHHHHHHHHhcccC-----ceEEEEecCCCChHHHHHHHHHHCCCCEE
Confidence            566654    334455555666666777765432     34543    45555557778889999875

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=94.71  E-value=1.9  Score=35.00  Aligned_cols=166  Identities=16%  Similarity=0.212  Sum_probs=98.0

Q ss_pred             CHHHHHHhccCC--CCcEEEEEe--ecChHHHH---HHHHHcCCCEEEEcccCCCcchH-------HHHHHHHHHh--CC
Q 029661           12 GPLVVDALRPVT--DLPLDVHLM--IVEPEQRV---PDFIKAGADIVSVHCEQSSTIHL-------HRTLNQIKDL--GA   75 (190)
Q Consensus        12 G~~~v~~i~~~~--~~~i~~hlm--v~dp~~~i---~~~~~~Gad~v~vh~e~~~~~~~-------~~~i~~i~~~--g~   75 (190)
                      -+.+|++|+...  .+|+-+-+=  -++|+...   ......|+|+|=+....  ..+.       ..+.+..++.  +.
T Consensus        38 ~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g--~~~~~~a~e~l~~v~~av~~~~~~~  115 (235)
T PF04476_consen   38 FPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFG--CKDYDEAIEALEAVVRAVKDFDPDK  115 (235)
T ss_pred             CHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCC--CCCHHHHHHHHHHHHHHHhhhCCCc
Confidence            467888888763  367777331  13455432   23456799999997652  2233       3333444443  33


Q ss_pred             cEEEEEcCCC-------CHHHHHHhhcc--cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc
Q 029661           76 KAGVVLNPAT-------SLSAIECVLDV--VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP  146 (190)
Q Consensus        76 ~~g~~i~p~t-------~~~~~~~~~~~--~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~  146 (190)
                      ++.-+.-.+.       |.+ +.+++..  .+.+++=|-... ++..|.....+.+.+..+...+++  ...+..|.++.
T Consensus       116 ~vVAv~yAD~~r~~~~~p~~-l~~~a~~aG~~gvMlDTa~Kd-g~~L~d~~~~~~L~~Fv~~ar~~g--L~~aLAGSL~~  191 (235)
T PF04476_consen  116 KVVAVGYADAQRVGSISPLD-LPEIAAEAGFDGVMLDTADKD-GGSLFDHLSEEELAEFVAQARAHG--LMCALAGSLRF  191 (235)
T ss_pred             EEEEEEecchhhhcCCCHHH-HHHHHHHcCCCEEEEecccCC-CCchhhcCCHHHHHHHHHHHHHcc--chhhccccCCh
Confidence            4433333222       233 3344333  566655333322 233455555666776666665544  56788999999


Q ss_pred             ccHHHHHHcCCCEEEEcccccCCCCH------HHHHHHHHHhh
Q 029661          147 KNAYKVIEAGANALVAGSAVFGAKDY------AEAIKGIKTSK  183 (190)
Q Consensus       147 e~~~~~~~aGad~~VvGsaI~~~~dp------~~~~~~l~~~~  183 (190)
                      ++++.+...++|++=+=+++....|-      .+.+++|++.+
T Consensus       192 ~di~~L~~l~pD~lGfRGAvC~ggdR~~G~id~~~V~~lr~~~  234 (235)
T PF04476_consen  192 EDIPRLKRLGPDILGFRGAVCGGGDRRAGRIDPELVAALRALM  234 (235)
T ss_pred             hHHHHHHhcCCCEEEechhhCCCCCcCccccCHHHHHHHHHhc
Confidence            99999999999999887888865322      24666666654

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=94.67  E-value=0.31  Score=41.95  Aligned_cols=111  Identities=24%  Similarity=0.220  Sum_probs=70.7

Q ss_pred             HHHHHHcCCCEEEEccc---------CCCcchHHHHHHHHHHhCCcEEEEEcCCCC---HHHHHHhhcc-----cceEEE
Q 029661           40 VPDFIKAGADIVSVHCE---------QSSTIHLHRTLNQIKDLGAKAGVVLNPATS---LSAIECVLDV-----VDLVLI  102 (190)
Q Consensus        40 i~~~~~~Gad~v~vh~e---------~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~---~~~~~~~~~~-----~d~i~~  102 (190)
                      +..+.+.|||.|.+..-         .-+.+++.+.++.++++|+++.+++|....   .+.+.++++.     +|.|.+
T Consensus        19 l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv   98 (347)
T COG0826          19 LKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIV   98 (347)
T ss_pred             HHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEE
Confidence            45678899999999522         113567899999999999999999985533   3333344432     455543


Q ss_pred             EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccc
Q 029661          103 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAV  166 (190)
Q Consensus       103 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI  166 (190)
                        -         .|..   |.-+++..++  ..+.+.+.-.++ .+++.-+.+.|+..+|.-+.+
T Consensus        99 --~---------Dpg~---i~l~~e~~p~--l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEl  147 (347)
T COG0826          99 --A---------DPGL---IMLARERGPD--LPIHVSTQANVTNAETAKFWKELGAKRVVLPREL  147 (347)
T ss_pred             --c---------CHHH---HHHHHHhCCC--CcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccC
Confidence              1         2223   3333443322  233455566666 788888999998888877643

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=94.62  E-value=0.5  Score=38.31  Aligned_cols=109  Identities=15%  Similarity=0.067  Sum_probs=66.5

Q ss_pred             HHhccC-CCCcEEEEEeec-------ChHHHHHHHHHcCCCEEEEc---------ccCCCcchHHHHHHHHHHhCCcEEE
Q 029661           17 DALRPV-TDLPLDVHLMIV-------EPEQRVPDFIKAGADIVSVH---------CEQSSTIHLHRTLNQIKDLGAKAGV   79 (190)
Q Consensus        17 ~~i~~~-~~~~i~~hlmv~-------dp~~~i~~~~~~Gad~v~vh---------~e~~~~~~~~~~i~~i~~~g~~~g~   79 (190)
                      +.++.. .+..+++-++-.       +|..+.+.+.++|++.+.+-         .+.-+.+.+.++++.+|++|..+|+
T Consensus       106 ~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aL  185 (235)
T PF04476_consen  106 RAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMCAL  185 (235)
T ss_pred             HHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchhhc
Confidence            445543 456677766653       25677788999999999882         1111245788999999999999999


Q ss_pred             EEcCCCC-HHHHHHhhcccceEEEEeeecCCCCccc-chhhHHHHHHHHHH
Q 029661           80 VLNPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRM  128 (190)
Q Consensus        80 ~i~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~-~~~~~~ki~~~~~~  128 (190)
                      +=+-..+ +..+..+  ..|++-+-+--.+. |+.- ..-..++++++|+.
T Consensus       186 AGSL~~~di~~L~~l--~pD~lGfRGAvC~g-gdR~~G~id~~~V~~lr~~  233 (235)
T PF04476_consen  186 AGSLRFEDIPRLKRL--GPDILGFRGAVCGG-GDRRAGRIDPELVAALRAL  233 (235)
T ss_pred             cccCChhHHHHHHhc--CCCEEEechhhCCC-CCcCccccCHHHHHHHHHh
Confidence            7554333 3444443  47999776544432 1111 11224455555554

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=94.59  E-value=0.1  Score=42.92  Aligned_cols=60  Identities=10%  Similarity=0.134  Sum_probs=44.4

Q ss_pred             CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE
Q 029661           11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA   77 (190)
Q Consensus        11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~   77 (190)
                      -|.++++++++.++.|+.-+.|...   .++.+.+. +|++=+.+..  ..+ .++++++-+.|+-+
T Consensus        68 eGL~~L~~vk~~~GlpvvTeV~~~~---~~~~v~~~-~DilQIgArn--~rn-~~LL~a~g~t~kpV  127 (264)
T PRK05198         68 EGLKILQEVKETFGVPVLTDVHEPE---QAAPVAEV-VDVLQIPAFL--CRQ-TDLLVAAAKTGKVV  127 (264)
T ss_pred             HHHHHHHHHHHHHCCceEEEeCCHH---HHHHHHhh-CcEEEECchh--cch-HHHHHHHhccCCeE
Confidence            3677888888889999999877654   56777777 9999999874  332 46787777766543

>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors

Probab=94.59  E-value=1.2  Score=40.07  Aligned_cols=140  Identities=11%  Similarity=0.140  Sum_probs=87.2

Q ss_pred             HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCC-Ccccc
Q 029661           39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFG-GQSFI  115 (190)
Q Consensus        39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~-gq~~~  115 (190)
                      .++...+.|+|+|.+-.-. +.+++.++-+.+++.|.++.+...-+|+  ++.+++++..+|.|++-.-+-|.. |   .
T Consensus       179 di~f~~~~~vD~ia~SFV~-~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~DgImIargDLg~e~g---~  254 (480)
T cd00288         179 DLRFGVEQGVDMIFASFVR-KASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGVEIP---A  254 (480)
T ss_pred             HHHHHHHcCCCEEEECCCC-CHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEECcchhhhhcC---h
Confidence            4666789999999987543 3556777777777777676665444444  678889888899988632222211 1   2


Q ss_pred             hhhHHHHHHHHHHHhhcCCCCeEEEeCCC--------Cc-----ccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661          116 ESQVKKISDLRRMCLEKGVNPWIEVDGGV--------GP-----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS  182 (190)
Q Consensus       116 ~~~~~ki~~~~~~~~~~~~~~~i~vdGGI--------~~-----e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~  182 (190)
                      ++.....+++.+.+.+++.  ++.+.-=+        .|     ..+..++..|+|.+.+..-=-....|.++++.+.+.
T Consensus       255 ~~v~~~qk~ii~~~~~~gk--pvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I  332 (480)
T cd00288         255 EEVFLAQKMLIAKCNLAGK--PVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARI  332 (480)
T ss_pred             HHHHHHHHHHHHHHHHcCC--CEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHH
Confidence            4445555555565555543  33332211        11     145556667999999864433346889998888775


Q ss_pred             hc
Q 029661          183 KR  184 (190)
Q Consensus       183 ~~  184 (190)
                      +.
T Consensus       333 ~~  334 (480)
T cd00288         333 CL  334 (480)
T ss_pred             HH
Confidence            53

Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=94.57  E-value=0.16  Score=45.68  Aligned_cols=79  Identities=20%  Similarity=0.289  Sum_probs=51.7

Q ss_pred             CcEEEEEcCCCC-HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHH
Q 029661           75 AKAGVVLNPATS-LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV  152 (190)
Q Consensus        75 ~~~g~~i~p~t~-~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~  152 (190)
                      ..+|.++..... .++++.+++ .+|.|.+   ++. .|  -.+..++.|+++|+..+    +.+|.+....+.+.+..+
T Consensus       230 L~Vgaavg~~~~~~~~~~~l~~ag~d~i~i---d~a-~G--~s~~~~~~i~~ik~~~~----~~~v~aG~V~t~~~a~~~  299 (495)
T PTZ00314        230 LLVGAAISTRPEDIERAAALIEAGVDVLVV---DSS-QG--NSIYQIDMIKKLKSNYP----HVDIIAGNVVTADQAKNL  299 (495)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHCCCCEEEE---ecC-CC--CchHHHHHHHHHHhhCC----CceEEECCcCCHHHHHHH
Confidence            446677765322 466666665 3787754   332 22  12335677888887643    367766566668999999


Q ss_pred             HHcCCCEEEEc
Q 029661          153 IEAGANALVAG  163 (190)
Q Consensus       153 ~~aGad~~VvG  163 (190)
                      +++|||++.+|
T Consensus       300 ~~aGad~I~vg  310 (495)
T PTZ00314        300 IDAGADGLRIG  310 (495)
T ss_pred             HHcCCCEEEEC
Confidence            99999999875

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=94.53  E-value=0.46  Score=42.24  Aligned_cols=77  Identities=21%  Similarity=0.289  Sum_probs=51.5

Q ss_pred             EEEEEcCC-CCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHH
Q 029661           77 AGVVLNPA-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE  154 (190)
Q Consensus        77 ~g~~i~p~-t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~  154 (190)
                      ++-++... ...++.+.+++ .+|.|.+=+.+ |     -.+..++.|+++|+..+    +.+|.+.+..+.+.+..+++
T Consensus       215 V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~-g-----~~~~~~~~i~~i~~~~~----~~~vi~G~v~t~~~a~~l~~  284 (450)
T TIGR01302       215 VGAAVGTREFDKERAEALVKAGVDVIVIDSSH-G-----HSIYVIDSIKEIKKTYP----DLDIIAGNVATAEQAKALID  284 (450)
T ss_pred             EEEEecCchhHHHHHHHHHHhCCCEEEEECCC-C-----cHhHHHHHHHHHHHhCC----CCCEEEEeCCCHHHHHHHHH
Confidence            34444432 22456666655 37887653333 2     22456777888877643    46787878888999999999


Q ss_pred             cCCCEEEEc
Q 029661          155 AGANALVAG  163 (190)
Q Consensus       155 aGad~~VvG  163 (190)
                      +|||++.+|
T Consensus       285 aGad~i~vg  293 (450)
T TIGR01302       285 AGADGLRVG  293 (450)
T ss_pred             hCCCEEEEC
Confidence            999999766

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=94.50  E-value=0.32  Score=42.16  Aligned_cols=92  Identities=17%  Similarity=0.313  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeee--cCC-CCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661           63 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVN--PGF-GGQSFIESQVKKISDLRRMCLEKGVNPWI  138 (190)
Q Consensus        63 ~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~--pG~-~gq~~~~~~~~ki~~~~~~~~~~~~~~~i  138 (190)
                      +.+.++.+|+.+..+-+-++|....+..+.+.+ .+|.|.+.+..  ..+ ++..    ....+.++++.     .++++
T Consensus       121 ~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~----~p~~l~~~i~~-----~~IPV  191 (369)
T TIGR01304       121 LGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSG----EPLNLKEFIGE-----LDVPV  191 (369)
T ss_pred             HHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCC----CHHHHHHHHHH-----CCCCE
Confidence            345566777766444455555444444444444 38888764321  111 1211    12334444432     23667


Q ss_pred             EEeCCCC-cccHHHHHHcCCCEEEEcc
Q 029661          139 EVDGGVG-PKNAYKVIEAGANALVAGS  164 (190)
Q Consensus       139 ~vdGGI~-~e~~~~~~~aGad~~VvGs  164 (190)
                      .+ |++. .+.+..+.++|||++++|+
T Consensus       192 I~-G~V~t~e~A~~~~~aGaDgV~~G~  217 (369)
T TIGR01304       192 IA-GGVNDYTTALHLMRTGAAGVIVGP  217 (369)
T ss_pred             EE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence            55 5555 7899999999999999885

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK15108 biotin synthase; Provisional

Probab=94.49  E-value=2.8  Score=35.96  Aligned_cols=162  Identities=16%  Similarity=0.211  Sum_probs=91.4

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-----------CcchHHHHHHHHHHhCCcEE--EE
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-----------STIHLHRTLNQIKDLGAKAG--VV   80 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-----------~~~~~~~~i~~i~~~g~~~g--~~   80 (190)
                      +.++.||+ .+..+.+.+-..+ .+.++.+.++|+|.+.+-.|+.           +.++.-+.++.+++.|++++  +.
T Consensus       115 ~~i~~ik~-~~i~v~~s~G~ls-~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i  192 (345)
T PRK15108        115 QMVQGVKA-MGLETCMTLGTLS-ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGI  192 (345)
T ss_pred             HHHHHHHh-CCCEEEEeCCcCC-HHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEE
Confidence            45666664 3444444433333 5678889999999988855541           11234567777777888874  45


Q ss_pred             EcCCCCH-HHHHHhh---c---ccceEEEEeee--cCCC--Ccc-c-chhhHHHHHHHHHHHhhcCCCCeEEEeCCC-C-
Q 029661           81 LNPATSL-SAIECVL---D---VVDLVLIMSVN--PGFG--GQS-F-IESQVKKISDLRRMCLEKGVNPWIEVDGGV-G-  145 (190)
Q Consensus        81 i~p~t~~-~~~~~~~---~---~~d~i~~m~v~--pG~~--gq~-~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI-~-  145 (190)
                      +...... ++++-+.   +   .++.|-+.-..  ||+-  +.+ . ..+.+..|.-.|=++++    ..+-+.||- + 
T Consensus       193 ~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~----~~i~i~~g~~~~  268 (345)
T PRK15108        193 VGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPT----SYVRLSAGREQM  268 (345)
T ss_pred             EeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----ceeeecccHhHh
Confidence            5554443 3332222   1   23455444443  3542  211 1 13345556666655543    346677776 2 


Q ss_pred             -cccHHHHHHcCCCEEEEcccc-cCC-CCHHHHHHHHHH
Q 029661          146 -PKNAYKVIEAGANALVAGSAV-FGA-KDYAEAIKGIKT  181 (190)
Q Consensus       146 -~e~~~~~~~aGad~~VvGsaI-~~~-~dp~~~~~~l~~  181 (190)
                       .+.-+....+|||.+++|-.+ +.. .++++-++-+++
T Consensus       269 ~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i~~  307 (345)
T PRK15108        269 NEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRK  307 (345)
T ss_pred             ChhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHHHH
Confidence             345677889999999999864 443 345554444543

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=94.48  E-value=1.4  Score=37.81  Aligned_cols=149  Identities=13%  Similarity=0.111  Sum_probs=94.5

Q ss_pred             HHHHhccCC-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------C-cchH---HHHHHHHHHhCCcE----E
Q 029661           15 VVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------S-TIHL---HRTLNQIKDLGAKA----G   78 (190)
Q Consensus        15 ~v~~i~~~~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------~-~~~~---~~~i~~i~~~g~~~----g   78 (190)
                      .++.+.+.. ++|+-+||==..-.+.+..+.++|.+.|-+=....       + .+++   .++++.++..|+.+    |
T Consensus        63 ~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG  142 (347)
T TIGR01521        63 LILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELG  142 (347)
T ss_pred             HHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence            455555444 48999998554345578889999999998854421       1 1222   46777788766554    2


Q ss_pred             EE--E--------------------cCCCCHHHHHHhhc--ccceEE--EEeeecCCCCcccch----hhHHHHHHHHHH
Q 029661           79 VV--L--------------------NPATSLSAIECVLD--VVDLVL--IMSVNPGFGGQSFIE----SQVKKISDLRRM  128 (190)
Q Consensus        79 ~~--i--------------------~p~t~~~~~~~~~~--~~d~i~--~m~v~pG~~gq~~~~----~~~~ki~~~~~~  128 (190)
                      -.  .                    ..-|..+..+++.+  .+|.+.  +-++| |...+...|    --+++++++++.
T Consensus       143 ~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~H-G~Yk~~~~p~~~~Ld~~rL~eI~~~  221 (347)
T TIGR01521       143 CLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSH-GAYKFTRKPTGEVLAIQRIEEIHAR  221 (347)
T ss_pred             ecccccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhccccc-CCcCCCCCCChhhcCHHHHHHHHcc
Confidence            21  0                    11356677777776  378754  23344 222111112    336777777766


Q ss_pred             HhhcCCCCeEEEeCCCC-----------------------cccHHHHHHcCCCEEEEcccccC
Q 029661          129 CLEKGVNPWIEVDGGVG-----------------------PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       129 ~~~~~~~~~i~vdGGI~-----------------------~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      ++    ++++..=||-.                       .+.++++++.|..-+=++|.+..
T Consensus       222 v~----~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~  280 (347)
T TIGR01521       222 LP----DTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRL  280 (347)
T ss_pred             CC----CCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHH
Confidence            52    36788888776                       47999999999999999998864

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>KOG0538 consensus Glycolate oxidase [Energy production and conversion]

Probab=94.47  E-value=0.99  Score=38.14  Aligned_cols=70  Identities=13%  Similarity=0.321  Sum_probs=51.4

Q ss_pred             CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-ccHHHHHHcCCCEEEEcccc-cC-----CCCHHHHHHHHHHhh
Q 029661          111 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAV-FG-----AKDYAEAIKGIKTSK  183 (190)
Q Consensus       111 gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-e~~~~~~~aGad~~VvGsaI-~~-----~~dp~~~~~~l~~~~  183 (190)
                      .+.+.|.+++-+.++-+..+.   .+++..|||++. ..+-+....||..+-+|+.+ |.     ..-.++.++-|++.+
T Consensus       257 QlD~vpAtI~~L~Evv~aV~~---ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~ef  333 (363)
T KOG0538|consen  257 QLDYVPATIEALPEVVKAVEG---RIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEF  333 (363)
T ss_pred             ccCcccchHHHHHHHHHHhcC---ceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHHHH
Confidence            345567888878777776654   478899999995 56777889999999999975 43     235567777777643

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)

Probab=94.46  E-value=1  Score=31.86  Aligned_cols=92  Identities=20%  Similarity=0.230  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE
Q 029661           63 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV  140 (190)
Q Consensus        63 ~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v  140 (190)
                      +.-+...++++|.++-+. ..+.+.+.+.+.+.  ..|.|.+ |+.-  ..      ......++.+..++.+.+..+.+
T Consensus        17 l~~la~~l~~~G~~v~~~-d~~~~~~~l~~~~~~~~pd~V~i-S~~~--~~------~~~~~~~l~~~~k~~~p~~~iv~   86 (121)
T PF02310_consen   17 LLYLAAYLRKAGHEVDIL-DANVPPEELVEALRAERPDVVGI-SVSM--TP------NLPEAKRLARAIKERNPNIPIVV   86 (121)
T ss_dssp             HHHHHHHHHHTTBEEEEE-ESSB-HHHHHHHHHHTTCSEEEE-EESS--ST------HHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             HHHHHHHHHHCCCeEEEE-CCCCCHHHHHHHHhcCCCcEEEE-EccC--cC------cHHHHHHHHHHHHhcCCCCEEEE
Confidence            455666677788887643 33444455544432  4677765 3321  11      12223333344444455677755


Q ss_pred             eCCCCcccHHHHHH--cCCCEEEEcc
Q 029661          141 DGGVGPKNAYKVIE--AGANALVAGS  164 (190)
Q Consensus       141 dGGI~~e~~~~~~~--aGad~~VvGs  164 (190)
                      .|..-.....++.+  .|+|.++.|-
T Consensus        87 GG~~~t~~~~~~l~~~~~~D~vv~Ge  112 (121)
T PF02310_consen   87 GGPHATADPEEILREYPGIDYVVRGE  112 (121)
T ss_dssp             EESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred             ECCchhcChHHHhccCcCcceecCCC
Confidence            55543444455444  7999999994

Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=94.42  E-value=3.1  Score=36.15  Aligned_cols=142  Identities=18%  Similarity=0.150  Sum_probs=78.6

Q ss_pred             HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcc-cceEEE-EeeecCCCC---c
Q 029661           38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLI-MSVNPGFGG---Q  112 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~-~d~i~~-m~v~pG~~g---q  112 (190)
                      .+++.+.++|++.|=+..-+ ..+...+.++.+.+.+.+.-+.....+..+.++..++. +|.|-+ .++.+-.--   .
T Consensus        30 ~ia~~L~~~GV~~IE~G~p~-~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~  108 (378)
T PRK11858         30 AIARMLDEIGVDQIEAGFPA-VSEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLK  108 (378)
T ss_pred             HHHHHHHHhCCCEEEEeCCC-cChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhC
Confidence            46778899999998774221 12234467888888887765544333444455554443 666543 222211000   0


Q ss_pred             ccchhhHHHHHHHHHHHhhcCCCCeEE-EeCCCC-cc----cHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661          113 SFIESQVKKISDLRRMCLEKGVNPWIE-VDGGVG-PK----NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       113 ~~~~~~~~ki~~~~~~~~~~~~~~~i~-vdGGI~-~e----~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~  181 (190)
                      .-.++.++++.+.-++..+.+..+.+. -|++-. ++    -++.+.++|||.+.+-=.. ..-.|.+..+.++.
T Consensus       109 ~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~-G~~~P~~v~~lv~~  182 (378)
T PRK11858        109 KTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTV-GILDPFTMYELVKE  182 (378)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccC-CCCCHHHHHHHHHH
Confidence            114666777777777777666544433 244433 33    4456678899988766322 33456655444433

>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain

Probab=94.42  E-value=1.3  Score=31.90  Aligned_cols=100  Identities=15%  Similarity=0.166  Sum_probs=59.1

Q ss_pred             HHHHHHHhCCcEEEEEcCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCC-CCeEEEeC
Q 029661           66 TLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDG  142 (190)
Q Consensus        66 ~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~-~~~i~vdG  142 (190)
                      +...++..|.++. .+.+.+|.+.+.+.+.  .+|+|.+-+..         +...+.++++.+.+.+.+. ++.+.+.|
T Consensus        19 ~~~~l~~~G~~vi-~lG~~vp~e~~~~~a~~~~~d~V~iS~~~---------~~~~~~~~~~~~~L~~~~~~~i~i~~GG   88 (122)
T cd02071          19 IARALRDAGFEVI-YTGLRQTPEEIVEAAIQEDVDVIGLSSLS---------GGHMTLFPEVIELLRELGAGDILVVGGG   88 (122)
T ss_pred             HHHHHHHCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEcccc---------hhhHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence            3445666776653 4556677766655443  37777653332         1223333444444434333 56777777


Q ss_pred             CCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 029661          143 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK  180 (190)
Q Consensus       143 GI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~  180 (190)
                      ....+...++.++|.|.++-++     .++++.+..++
T Consensus        89 ~~~~~~~~~~~~~G~d~~~~~~-----~~~~~~~~~~~  121 (122)
T cd02071          89 IIPPEDYELLKEMGVAEIFGPG-----TSIEEIIDKIR  121 (122)
T ss_pred             CCCHHHHHHHHHCCCCEEECCC-----CCHHHHHHHHh
Confidence            7777788899999999887553     45555555554

This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=94.41  E-value=1.1  Score=38.85  Aligned_cols=136  Identities=14%  Similarity=0.125  Sum_probs=72.8

Q ss_pred             HHHHHHHcCCCEEEEcccCCC---------------cchHHHHHHHHHHhCCc-E--EEEEcCCCCHHHHHHhhc-----
Q 029661           39 RVPDFIKAGADIVSVHCEQSS---------------TIHLHRTLNQIKDLGAK-A--GVVLNPATSLSAIECVLD-----   95 (190)
Q Consensus        39 ~i~~~~~~Gad~v~vh~e~~~---------------~~~~~~~i~~i~~~g~~-~--g~~i~p~t~~~~~~~~~~-----   95 (190)
                      .++.+.++|++.+++-.|+.+               .+..-+.++.+++.|++ +  |+.+......+...+.+.     
T Consensus       165 ~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L  244 (371)
T PRK09240        165 EYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYL  244 (371)
T ss_pred             HHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHH
Confidence            457899999999999877631               12234567777888986 4  555554433322222221     


Q ss_pred             --c-------cceEEEEeeecC-CCCccc-c-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHH-H-------HHc
Q 029661           96 --V-------VDLVLIMSVNPG-FGGQSF-I-ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYK-V-------IEA  155 (190)
Q Consensus        96 --~-------~d~i~~m~v~pG-~~gq~~-~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~-~-------~~a  155 (190)
                        .       +.+.-+|.. || +..+.. . .+.++.|...|-+.++    ..|.+.||=. .+++. +       ..+
T Consensus       245 ~~~~~~~~~sv~~~~l~P~-~g~~~~~~~~~~~e~l~~ia~~Rl~lP~----~~i~~s~g~~-~~lrd~~~~~~~~~~~a  318 (371)
T PRK09240        245 QRKYWQAEYSISFPRLRPC-TGGIEPASIVSDKQLVQLICAFRLFLPD----VEISLSTRES-PEFRDNLIPLGITKMSA  318 (371)
T ss_pred             HHhCCCCceeeecCccccC-CCCCCCCCCCCHHHHHHHHHHHHHHCcc----cccEEecCCC-HHHHHHHHhhcceeecc
Confidence              0       122234444 45 222221 1 3445556666666654    5688899843 33332 1       233


Q ss_pred             CCCEEEEcccccC-----------CCCHHHHHHHHHH
Q 029661          156 GANALVAGSAVFG-----------AKDYAEAIKGIKT  181 (190)
Q Consensus       156 Gad~~VvGsaI~~-----------~~dp~~~~~~l~~  181 (190)
                      | +...+|.+...           ...+++-++.|++
T Consensus       319 g-~~~~~G~y~~~~~~~~qf~~~~~r~~~~~~~~i~~  354 (371)
T PRK09240        319 G-SSTQPGGYADDHKELEQFEISDDRSVEEVAAALRA  354 (371)
T ss_pred             C-ccCCCCCcCCCCCCcCCccCCCCCCHHHHHHHHHH
Confidence            3 55566666654           2345555555554

>PRK02261 methylaspartate mutase subunit S; Provisional

Probab=94.40  E-value=1.5  Score=32.52  Aligned_cols=105  Identities=18%  Similarity=0.076  Sum_probs=60.0

Q ss_pred             HHHHHHHhCCcEEEEEcCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC
Q 029661           66 TLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG  143 (190)
Q Consensus        66 ~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG  143 (190)
                      +...++.+|.++. .+-+.+|.+.+.+.+.  .+|+|.+-+.. +..    .+...+-++++++..   ..++.+.+.|.
T Consensus        23 v~~~lr~~G~eVi-~LG~~vp~e~i~~~a~~~~~d~V~lS~~~-~~~----~~~~~~~~~~L~~~~---~~~~~i~vGG~   93 (137)
T PRK02261         23 LDRALTEAGFEVI-NLGVMTSQEEFIDAAIETDADAILVSSLY-GHG----EIDCRGLREKCIEAG---LGDILLYVGGN   93 (137)
T ss_pred             HHHHHHHCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEcCcc-ccC----HHHHHHHHHHHHhcC---CCCCeEEEECC
Confidence            4455677777753 4556677776666543  37777653333 211    222333333443331   12577888888


Q ss_pred             CC------cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661          144 VG------PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       144 I~------~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~  184 (190)
                      +.      .+..+.+.+.|.|.+--+     ..++++.+..+++.++
T Consensus        94 ~~~~~~~~~~~~~~l~~~G~~~vf~~-----~~~~~~i~~~l~~~~~  135 (137)
T PRK02261         94 LVVGKHDFEEVEKKFKEMGFDRVFPP-----GTDPEEAIDDLKKDLN  135 (137)
T ss_pred             CCCCccChHHHHHHHHHcCCCEEECc-----CCCHHHHHHHHHHHhc
Confidence            83      234457888897644322     3577888888877654

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=94.38  E-value=0.61  Score=41.79  Aligned_cols=66  Identities=26%  Similarity=0.378  Sum_probs=47.0

Q ss_pred             HHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEc
Q 029661           88 SAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG  163 (190)
Q Consensus        88 ~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvG  163 (190)
                      ++++.+++ .+|.|.+=+.+    |..  ...++.++++|+..+    ++++.++.+.+.+.+..+.++|||++-+|
T Consensus       228 ~ra~~Lv~aGVd~i~~D~a~----g~~--~~~~~~i~~i~~~~~----~~~vi~g~~~t~~~~~~l~~~G~d~i~vg  294 (475)
T TIGR01303       228 GKAKALLDAGVDVLVIDTAH----GHQ--VKMISAIKAVRALDL----GVPIVAGNVVSAEGVRDLLEAGANIIKVG  294 (475)
T ss_pred             HHHHHHHHhCCCEEEEeCCC----CCc--HHHHHHHHHHHHHCC----CCeEEEeccCCHHHHHHHHHhCCCEEEEC
Confidence            55666655 37887664444    322  456777888777543    46787777999999999999999999755

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=94.33  E-value=1  Score=42.72  Aligned_cols=124  Identities=15%  Similarity=0.176  Sum_probs=74.5

Q ss_pred             HHHHcCCCEEEEccc---------CC-----------Cc----chHHHHHHHHHHh---CCcEEEEEcCCC------CHH
Q 029661           42 DFIKAGADIVSVHCE---------QS-----------ST----IHLHRTLNQIKDL---GAKAGVVLNPAT------SLS   88 (190)
Q Consensus        42 ~~~~~Gad~v~vh~e---------~~-----------~~----~~~~~~i~~i~~~---g~~~g~~i~p~t------~~~   88 (190)
                      .+.++|+|+|-+|.-         +.           +.    .-+.++++.+|+.   ++.+++=+++..      +.+
T Consensus       559 ~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~  638 (765)
T PRK08255        559 RAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPD  638 (765)
T ss_pred             HHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHH
Confidence            457789999999865         20           11    1245788888884   456777777521      222


Q ss_pred             H---HHHhhcc--cceEEEEeeecCCCCcccc---h-hhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-C
Q 029661           89 A---IECVLDV--VDLVLIMSVNPGFGGQSFI---E-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-A  157 (190)
Q Consensus        89 ~---~~~~~~~--~d~i~~m~v~pG~~gq~~~---~-~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-a  157 (190)
                      .   +.+.++.  +|+|-+-+  .++..+...   + ......+++|+..     +.++.+-|+|+ ++++.++++.| +
T Consensus       639 ~~~~~~~~l~~~g~d~i~vs~--g~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pv~~~G~i~~~~~a~~~l~~g~~  711 (765)
T PRK08255        639 DAVEIARAFKAAGADLIDVSS--GQVSKDEKPVYGRMYQTPFADRIRNEA-----GIATIAVGAISEADHVNSIIAAGRA  711 (765)
T ss_pred             HHHHHHHHHHhcCCcEEEeCC--CCCCcCCCCCcCccccHHHHHHHHHHc-----CCEEEEeCCCCCHHHHHHHHHcCCc
Confidence            2   2223332  68876521  111111100   0 1122234444433     46888999997 78999998876 9


Q ss_pred             CEEEEcccccCCCCH
Q 029661          158 NALVAGSAVFGAKDY  172 (190)
Q Consensus       158 d~~VvGsaI~~~~dp  172 (190)
                      |.+-+|+++...++.
T Consensus       712 D~v~~gR~~l~dP~~  726 (765)
T PRK08255        712 DLCALARPHLADPAW  726 (765)
T ss_pred             ceeeEcHHHHhCccH
Confidence            999999999886654

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=94.32  E-value=1  Score=37.83  Aligned_cols=155  Identities=12%  Similarity=0.121  Sum_probs=85.2

Q ss_pred             HHHHHHhccCCCCcEEEEEeec--ChH---HHHHHHHHcCCCEEEEcccC----------C-----CcchHHHHHHHHHH
Q 029661           13 PLVVDALRPVTDLPLDVHLMIV--EPE---QRVPDFIKAGADIVSVHCEQ----------S-----STIHLHRTLNQIKD   72 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~--dp~---~~i~~~~~~Gad~v~vh~e~----------~-----~~~~~~~~i~~i~~   72 (190)
                      ...+++|...+++|+.+|+=.-  ++.   +.++.+.++|+-++++--..          +     +.++..+-|+++++
T Consensus        64 ~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~  143 (290)
T TIGR02321        64 LEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATA  143 (290)
T ss_pred             HHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHH
Confidence            3456667777899999998773  433   34788999999998883210          0     11222344455554


Q ss_pred             hCCcEEEEEcCCCC-----------HHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE
Q 029661           73 LGAKAGVVLNPATS-----------LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV  140 (190)
Q Consensus        73 ~g~~~g~~i~p~t~-----------~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v  140 (190)
                      .-...-++|+--|+           +++.+.|.+. +|.|.+    ||..      ...+.++++.+.++   ...++.+
T Consensus       144 a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv----~~~~------~~~~ei~~~~~~~~---~p~pv~~  210 (290)
T TIGR02321       144 ARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILI----HSRQ------KTPDEILAFVKSWP---GKVPLVL  210 (290)
T ss_pred             hCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEe----cCCC------CCHHHHHHHHHhcC---CCCCeEE
Confidence            32223344432222           2445555543 788764    3310      12344555554432   1134433


Q ss_pred             eCCCCcc-cHHHHHHcC-CCEEEEcccccCC--CCHHHHHHHHH
Q 029661          141 DGGVGPK-NAYKVIEAG-ANALVAGSAVFGA--KDYAEAIKGIK  180 (190)
Q Consensus       141 dGGI~~e-~~~~~~~aG-ad~~VvGsaI~~~--~dp~~~~~~l~  180 (190)
                      -.|-++. +..++.+.| ...++.|+..+.+  ....++++.++
T Consensus       211 ~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~aa~~a~~~~~~~i~  254 (290)
T TIGR02321       211 VPTAYPQLTEADIAALSKVGIVIYGNHAIRAAVGAVREVFARIR  254 (290)
T ss_pred             ecCCCCCCCHHHHHHhcCCcEEEEChHHHHHHHHHHHHHHHHHH
Confidence            3344443 667888888 8999999877654  23334444443

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>PRK09389 (R)-citramalate synthase; Provisional

Probab=94.28  E-value=1.7  Score=39.20  Aligned_cols=114  Identities=15%  Similarity=0.148  Sum_probs=71.8

Q ss_pred             HHHHHHHHcCCCEEEEcccCCC--------------cchHHHHHHHHHHhCCcEEEEEc--CCCCHHHHHHhhcc-----
Q 029661           38 QRVPDFIKAGADIVSVHCEQSS--------------TIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----   96 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~~--------------~~~~~~~i~~i~~~g~~~g~~i~--p~t~~~~~~~~~~~-----   96 (190)
                      .-++.+.++|++.|++..-..+              .+.+.+.++++|++|.++-+...  ..++.+.+.+++..     
T Consensus        77 ~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G  156 (488)
T PRK09389         77 VDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAG  156 (488)
T ss_pred             HHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCC
Confidence            3578889999999888643210              12355667888999988766543  33556666555432     


Q ss_pred             cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661           97 VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        97 ~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~  160 (190)
                      +|.|.+    |.+.|-..+.+..+.++.+++..     +++|.+    |-|...-|.-..+++||+.+
T Consensus       157 a~~i~l----~DTvG~~~P~~~~~lv~~l~~~~-----~v~l~~H~HND~GlAvANalaAv~aGa~~V  215 (488)
T PRK09389        157 ADRICF----CDTVGILTPEKTYELFKRLSELV-----KGPVSIHCHNDFGLAVANTLAALAAGADQV  215 (488)
T ss_pred             CCEEEE----ecCCCCcCHHHHHHHHHHHHhhc-----CCeEEEEecCCccHHHHHHHHHHHcCCCEE
Confidence            566644    45555555556666666666543     245554    55666557778889999964

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]

Probab=94.27  E-value=0.36  Score=43.12  Aligned_cols=121  Identities=21%  Similarity=0.291  Sum_probs=78.6

Q ss_pred             HHcCCCEEEE--cccCCCcchHHHHHHHHHHhC--CcEEEEEcCCCCHHHHHHh-hc-ccceEEEEeeecCCCCccc--c
Q 029661           44 IKAGADIVSV--HCEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECV-LD-VVDLVLIMSVNPGFGGQSF--I  115 (190)
Q Consensus        44 ~~~Gad~v~v--h~e~~~~~~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~-~~-~~d~i~~m~v~pG~~gq~~--~  115 (190)
                      ..-|.+.++=  |.+..+.+++...|..+|+.+  .++++=+-....++.+.-- +. .+|.|++=+-+-|++-.++  +
T Consensus       269 ~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~  348 (485)
T COG0069         269 SPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSI  348 (485)
T ss_pred             CCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHh
Confidence            3446677765  222224677889999999974  6677767777888766653 32 4899988555544432221  1


Q ss_pred             -----hhhHHHHHHHHHHHhhcC--CCCeEEEeCCCC-cccHHHHHHcCCCEEEEccc
Q 029661          116 -----ESQVKKISDLRRMCLEKG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA  165 (190)
Q Consensus       116 -----~~~~~ki~~~~~~~~~~~--~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsa  165 (190)
                           |.- --|.+..+.+..++  ..+.|.+|||++ ...+...+..|||.|=.|++
T Consensus       349 ~~~GiP~e-~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa  405 (485)
T COG0069         349 DHAGIPWE-LGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTA  405 (485)
T ss_pred             hcCCchHH-HHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchH
Confidence                 111 11444444444433  457899999999 57888889999999999985

>PRK06739 pyruvate kinase; Validated

Probab=94.10  E-value=1.3  Score=38.18  Aligned_cols=138  Identities=11%  Similarity=0.245  Sum_probs=83.0

Q ss_pred             HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcCC--CCHHHHHHhhcccceEEEE----eeecCCC
Q 029661           38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPA--TSLSAIECVLDVVDLVLIM----SVNPGFG  110 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p~--t~~~~~~~~~~~~d~i~~m----~v~pG~~  110 (190)
                      ..++...+.|+|+|.+-.-- +.+++.++-+.++++|. .+.+...-+  ..++.+.+++..+|.|++-    +++-++.
T Consensus       169 ~di~f~~~~~vD~ia~SFVr-~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVARGDLgve~~~e  247 (352)
T PRK06739        169 KDIQFLLEEDVDFIACSFVR-KPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIARGDLGVELPYQ  247 (352)
T ss_pred             HHHHHHHHcCCCEEEECCCC-CHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEECcccccccCHH
Confidence            34667788999999997543 35667777777777754 455543333  4468889999999999872    3332211


Q ss_pred             CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC--------Cc-----ccHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 029661          111 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV--------GP-----KNAYKVIEAGANALVAGSAVFGAKDYAEAIK  177 (190)
Q Consensus       111 gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI--------~~-----e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~  177 (190)
                         ..|..-++|-   +.+.+.+.  ++-+.-=+        .|     ..+..++..|+|.+.+..-=-....|.++++
T Consensus       248 ---~vp~~Qk~Ii---~~c~~~gk--PvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPveaV~  319 (352)
T PRK06739        248 ---FIPLLQKMMI---QECNRTNT--YVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIESVS  319 (352)
T ss_pred             ---HHHHHHHHHH---HHHHHhCC--CEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHHHHH
Confidence               1233333332   22222222  33222111        11     1555678889999998743333468999999


Q ss_pred             HHHHhhc
Q 029661          178 GIKTSKR  184 (190)
Q Consensus       178 ~l~~~~~  184 (190)
                      .+++.+.
T Consensus       320 ~m~~I~~  326 (352)
T PRK06739        320 TLRLVSE  326 (352)
T ss_pred             HHHHHHH
Confidence            9887553

>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases

Probab=94.08  E-value=3.1  Score=35.81  Aligned_cols=154  Identities=12%  Similarity=0.082  Sum_probs=90.1

Q ss_pred             HHHHHhccCCCCcEEEEEeecCh-------------HHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCc
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEP-------------EQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAK   76 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp-------------~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~   76 (190)
                      ..++.+.+..++|+.+||==...             .+++..+.+.|.+.|-+=....+. ++   -.++++.++..|+.
T Consensus        77 ~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvs  156 (345)
T cd00946          77 HHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMW  156 (345)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence            34455555568999999854432             234444557788888775433221 22   24666777777765


Q ss_pred             E----EEE--------E------cCCCCHHHHHHhhcc------cceEE--EEeeecCCCCcccchhhHHHHHHHHHHHh
Q 029661           77 A----GVV--------L------NPATSLSAIECVLDV------VDLVL--IMSVNPGFGGQSFIESQVKKISDLRRMCL  130 (190)
Q Consensus        77 ~----g~~--------i------~p~t~~~~~~~~~~~------~d~i~--~m~v~pG~~gq~~~~~~~~ki~~~~~~~~  130 (190)
                      +    |-.        -      ..-|..+...++.+.      +|.+.  +-++| |...+.-..-.+++++++++.+.
T Consensus       157 VEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~H-G~Y~~~~p~L~~~~L~~I~~~i~  235 (345)
T cd00946         157 LEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVH-GVYKPGNVKLQPEILGEHQDYVR  235 (345)
T ss_pred             EEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccc-cCCCCCCCccCHHHHHHHHHHHH
Confidence            4    221        0      013677777777763      46543  33444 22210011223666676655422


Q ss_pred             hc-----CCCCeEEEeCCCC--cccHHHHHHcCCCEEEEcccccC
Q 029661          131 EK-----GVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       131 ~~-----~~~~~i~vdGGI~--~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      +.     +.++++..=||-.  .+.++++++.|..-+=++|.+..
T Consensus       236 ~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~GI~KiNi~T~l~~  280 (345)
T cd00946         236 EKLGLADDKPLYFVFHGGSGSTKEEIREAISYGVVKMNIDTDTQW  280 (345)
T ss_pred             HhhccccCCCCCEEEeCCCCCCHHHHHHHHHcCCeeEEeCcHHHH
Confidence            21     1246777777655  68999999999999999998754

The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>PRK02227 hypothetical protein; Provisional

Probab=94.02  E-value=0.78  Score=37.32  Aligned_cols=111  Identities=12%  Similarity=0.051  Sum_probs=69.6

Q ss_pred             HHhccC-CCCcEEEEEeec-------ChHHHHHHHHHcCCCEEEEc---------ccCCCcchHHHHHHHHHHhCCcEEE
Q 029661           17 DALRPV-TDLPLDVHLMIV-------EPEQRVPDFIKAGADIVSVH---------CEQSSTIHLHRTLNQIKDLGAKAGV   79 (190)
Q Consensus        17 ~~i~~~-~~~~i~~hlmv~-------dp~~~i~~~~~~Gad~v~vh---------~e~~~~~~~~~~i~~i~~~g~~~g~   79 (190)
                      ++++.. .+..+++-++..       +|..+.+.++++|++.+.+-         .+.-+.+++.++++.+|++|+.+|+
T Consensus       106 ~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gL  185 (238)
T PRK02227        106 RAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLMSAL  185 (238)
T ss_pred             HhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccHhHh
Confidence            334443 466777766654       46778888999999999882         0101245789999999999999999


Q ss_pred             EEcCCCC-HHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHh
Q 029661           80 VLNPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCL  130 (190)
Q Consensus        80 ~i~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~  130 (190)
                      +=+-..+ +..++.+  ..||+-+-+--.+.+ +.-..-..++++++++.+.
T Consensus       186 AGSL~~~dip~L~~l--~pD~lGfRgavC~g~-dR~~~id~~~V~~~~~~l~  234 (238)
T PRK02227        186 AGSLKFEDIPALKRL--GPDILGVRGAVCGGG-DRTGRIDPELVAELREALR  234 (238)
T ss_pred             cccCchhhHHHHHhc--CCCEEEechhccCCC-CcccccCHHHHHHHHHHhh
Confidence            7554333 3444443  479997765544222 1111223455666676654

>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART)

Probab=93.91  E-value=3.2  Score=34.38  Aligned_cols=149  Identities=14%  Similarity=0.214  Sum_probs=81.1

Q ss_pred             HHhccC-CCCcEEEEEeecCh----HHHHHHHHHcCCCEEEEcccCC-------------C--cchHHHHHHHHHHhCCc
Q 029661           17 DALRPV-TDLPLDVHLMIVEP----EQRVPDFIKAGADIVSVHCEQS-------------S--TIHLHRTLNQIKDLGAK   76 (190)
Q Consensus        17 ~~i~~~-~~~~i~~hlmv~dp----~~~i~~~~~~Gad~v~vh~e~~-------------~--~~~~~~~i~~i~~~g~~   76 (190)
                      +++-.. .+.|+.+=+...||    ..|++.+.+.|..+|.=-+-.+             .  .+.=-+.++.+++.|+-
T Consensus        73 ~eiLp~v~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~  152 (268)
T PF09370_consen   73 REILPVVKDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLF  152 (268)
T ss_dssp             HHHGGG-SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-E
T ss_pred             HhhhhhccCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCe
Confidence            445443 56899999999999    4688999999999886432110             0  00112577888888876


Q ss_pred             EE-EEEcCCCCHHHHHHhhc-ccceEE-EEeeecC-CCCcc---cchhhHHHHHHHHHHHhhcCCCCe-EEEeCCCC-cc
Q 029661           77 AG-VVLNPATSLSAIECVLD-VVDLVL-IMSVNPG-FGGQS---FIESQVKKISDLRRMCLEKGVNPW-IEVDGGVG-PK  147 (190)
Q Consensus        77 ~g-~~i~p~t~~~~~~~~~~-~~d~i~-~m~v~pG-~~gq~---~~~~~~~ki~~~~~~~~~~~~~~~-i~vdGGI~-~e  147 (190)
                      .. .+.    ..+..+...+ .+|.|. .|+...| .-|.+   -..++.++++++.+-..+.+.++- +.-.|-|+ |+
T Consensus       153 T~~yvf----~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~  228 (268)
T PF09370_consen  153 TTAYVF----NEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPE  228 (268)
T ss_dssp             E--EE-----SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHH
T ss_pred             eeeeec----CHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHH
Confidence            53 333    3344555543 488774 3443322 12322   235667777777776666666654 44556677 78


Q ss_pred             cHHHHHHc--CCCEEEEcccccCC
Q 029661          148 NAYKVIEA--GANALVAGSAVFGA  169 (190)
Q Consensus       148 ~~~~~~~a--Gad~~VvGsaI~~~  169 (190)
                      .+..+.+.  |+++++.||++=+-
T Consensus       229 D~~~~l~~t~~~~Gf~G~Ss~ERl  252 (268)
T PF09370_consen  229 DAQYVLRNTKGIHGFIGASSMERL  252 (268)
T ss_dssp             HHHHHHHH-TTEEEEEESTTTTHH
T ss_pred             HHHHHHhcCCCCCEEecccchhhc
Confidence            88766543  47999999987653

Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.

>PRK00915 2-isopropylmalate synthase; Validated

Probab=93.81  E-value=1.2  Score=40.41  Aligned_cols=141  Identities=17%  Similarity=0.127  Sum_probs=82.3

Q ss_pred             HHHHHhccC-CCCcEEEEEeec--ChHHHHHHHHHcCCCEEEEcccCCCc---------------chHHHHHHHHHHhCC
Q 029661           14 LVVDALRPV-TDLPLDVHLMIV--EPEQRVPDFIKAGADIVSVHCEQSST---------------IHLHRTLNQIKDLGA   75 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~--dp~~~i~~~~~~Gad~v~vh~e~~~~---------------~~~~~~i~~i~~~g~   75 (190)
                      +.+++|.+. .+..+-+.....  |....++.+.++|++.|++..-. ++               +.+.+.++.+|++|.
T Consensus        56 ~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~~-Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~  134 (513)
T PRK00915         56 EAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIAT-SPIHMEYKLKMSREEVLEMAVEAVKYARSYTD  134 (513)
T ss_pred             HHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEECC-cHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence            345555432 344555533222  11222333347888888876432 11               124578889999999


Q ss_pred             cEEEEEc--CCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCC
Q 029661           76 KAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGV  144 (190)
Q Consensus        76 ~~g~~i~--p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI  144 (190)
                      ++-+...  ..++.+.+.+++..     +|.|.+    |.+.|...+..+.+.++.+++.++.. .+.+|++    |.|.
T Consensus       135 ~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l----~DTvG~~~P~~~~~~i~~l~~~~~~~-~~v~l~~H~HND~Gl  209 (513)
T PRK00915        135 DVEFSAEDATRTDLDFLCRVVEAAIDAGATTINI----PDTVGYTTPEEFGELIKTLRERVPNI-DKAIISVHCHNDLGL  209 (513)
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEE----ccCCCCCCHHHHHHHHHHHHHhCCCc-ccceEEEEecCCCCH
Confidence            9877653  33556655555432     566543    45556555666777788887765421 1245655    5667


Q ss_pred             CcccHHHHHHcCCCEE
Q 029661          145 GPKNAYKVIEAGANAL  160 (190)
Q Consensus       145 ~~e~~~~~~~aGad~~  160 (190)
                      -..|.-..+++||+.+
T Consensus       210 AvANslaAv~aGa~~V  225 (513)
T PRK00915        210 AVANSLAAVEAGARQV  225 (513)
T ss_pred             HHHHHHHHHHhCCCEE
Confidence            6667778889999964

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=93.74  E-value=1.8  Score=33.83  Aligned_cols=111  Identities=16%  Similarity=0.147  Sum_probs=57.4

Q ss_pred             HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh--CCcEEEEEcCCCCHHH-HHHhhc-ccceEEEEeeecCCCCcc
Q 029661           38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSA-IECVLD-VVDLVLIMSVNPGFGGQS  113 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~--g~~~g~~i~p~t~~~~-~~~~~~-~~d~i~~m~v~pG~~gq~  113 (190)
                      ++++.+ +.|.+++-+.... ....-.+.++.+|+.  +..++..+...++... ++.+.+ .+|+|.+....    +. 
T Consensus        16 ~~~~~l-~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~----~~-   88 (206)
T TIGR03128        16 ELAEKV-ADYVDIIEIGTPL-IKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA----DD-   88 (206)
T ss_pred             HHHHHc-ccCeeEEEeCCHH-HHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC----CH-
Confidence            455556 7778887773111 011224678888876  5566666543344433 555444 48998754322    11 


Q ss_pred             cchhhHHHHHHHHHHHhhcCCCCeEEEe--C-CCCcccHHHHHHcCCCEEEEc
Q 029661          114 FIESQVKKISDLRRMCLEKGVNPWIEVD--G-GVGPKNAYKVIEAGANALVAG  163 (190)
Q Consensus       114 ~~~~~~~ki~~~~~~~~~~~~~~~i~vd--G-GI~~e~~~~~~~aGad~~VvG  163 (190)
                         ..   +.++.+.+.++|  .++.++  + .-..+.+..+.+.|+|++-+.
T Consensus        89 ---~~---~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~  133 (206)
T TIGR03128        89 ---AT---IKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVH  133 (206)
T ss_pred             ---HH---HHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEc
Confidence               11   222333333333  334332  1 111355667778899988664

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=93.73  E-value=2.3  Score=34.97  Aligned_cols=147  Identities=18%  Similarity=0.234  Sum_probs=77.8

Q ss_pred             CcEEEEEeecChH-----HHHHHHHHcCCCEEEEcc-c-------------------CC-CcchHHHHHHHHHHh--CCc
Q 029661           25 LPLDVHLMIVEPE-----QRVPDFIKAGADIVSVHC-E-------------------QS-STIHLHRTLNQIKDL--GAK   76 (190)
Q Consensus        25 ~~i~~hlmv~dp~-----~~i~~~~~~Gad~v~vh~-e-------------------~~-~~~~~~~~i~~i~~~--g~~   76 (190)
                      .-+..+++.-+|.     ++++.+.+.|||++=+.. .                   .+ ..+...+.++.+|+.  +..
T Consensus        10 ~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~p   89 (256)
T TIGR00262        10 GAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIP   89 (256)
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence            4688888888873     356778899999999863 1                   10 011233445555543  333


Q ss_pred             EEEE--EcC--CCCHHH-HHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHH
Q 029661           77 AGVV--LNP--ATSLSA-IECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY  150 (190)
Q Consensus        77 ~g~~--i~p--~t~~~~-~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~  150 (190)
                      +.+.  .||  ....+. ++.+.+ .+|.+++            .....+...++.+.+.+++...-+.+...-+.+.++
T Consensus        90 lv~m~Y~Npi~~~G~e~f~~~~~~aGvdgvii------------pDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~  157 (256)
T TIGR00262        90 IGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLV------------ADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLK  157 (256)
T ss_pred             EEEEEeccHHhhhhHHHHHHHHHHcCCCEEEE------------CCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHH
Confidence            2221  121  011122 222222 1444433            222345556666666677766656677777778887


Q ss_pred             HHHHcCC-CEEEEcc-cccCC-----CCHHHHHHHHHHhh
Q 029661          151 KVIEAGA-NALVAGS-AVFGA-----KDYAEAIKGIKTSK  183 (190)
Q Consensus       151 ~~~~aGa-d~~VvGs-aI~~~-----~dp~~~~~~l~~~~  183 (190)
                      .+.+..- -+.++++ .++..     ++..+.++++|+..
T Consensus       158 ~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~  197 (256)
T TIGR00262       158 QIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS  197 (256)
T ss_pred             HHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc
Confidence            7766643 1333332 23322     34566777777643

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=93.67  E-value=2.6  Score=34.68  Aligned_cols=145  Identities=17%  Similarity=0.137  Sum_probs=81.4

Q ss_pred             CCHHHHHHhcc---CCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661           11 IGPLVVDALRP---VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL   87 (190)
Q Consensus        11 ~G~~~v~~i~~---~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~   87 (190)
                      +|.+-++.|++   ..++++....+-..   -++.+.+. +|++-+....  ..+ ..+++++.+.|+.+.+.-.+.-.+
T Consensus        73 ~g~~gl~~l~~~~~~~Gl~~~t~~~d~~---~~~~l~~~-~d~lkI~s~~--~~n-~~LL~~~a~~gkPVilk~G~~~t~  145 (260)
T TIGR01361        73 LGEEGLKLLRRAADEHGLPVVTEVMDPR---DVEIVAEY-ADILQIGARN--MQN-FELLKEVGKQGKPVLLKRGMGNTI  145 (260)
T ss_pred             cHHHHHHHHHHHHHHhCCCEEEeeCChh---hHHHHHhh-CCEEEECccc--ccC-HHHHHHHhcCCCcEEEeCCCCCCH
Confidence            35555555554   36777777444332   34555666 8999888763  333 358888888999888887766334


Q ss_pred             HHHHHhhcc-----c-ceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEe----CCCC---cccHHHHHH
Q 029661           88 SAIECVLDV-----V-DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD----GGVG---PKNAYKVIE  154 (190)
Q Consensus        88 ~~~~~~~~~-----~-d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vd----GGI~---~e~~~~~~~  154 (190)
                      +.+...++.     . ++++..+-...+.+......-+..|..+|+..     +++|..|    +|-+   +......+.
T Consensus       146 ~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~-----~~pV~~ds~Hs~G~r~~~~~~~~aAva  220 (260)
T TIGR01361       146 EEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET-----HLPIIVDPSHAAGRRDLVIPLAKAAIA  220 (260)
T ss_pred             HHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh-----CCCEEEcCCCCCCccchHHHHHHHHHH
Confidence            333332221     2 44443321222212122223355666666543     3677774    3322   223445688


Q ss_pred             cCCCEEEEccccc
Q 029661          155 AGANALVAGSAVF  167 (190)
Q Consensus       155 aGad~~VvGsaI~  167 (190)
                      .|||++++-+-+.
T Consensus       221 ~Ga~gl~iE~H~t  233 (260)
T TIGR01361       221 AGADGLMIEVHPD  233 (260)
T ss_pred             cCCCEEEEEeCCC
Confidence            9999988887665

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=93.60  E-value=1.8  Score=34.80  Aligned_cols=112  Identities=21%  Similarity=0.241  Sum_probs=65.5

Q ss_pred             HHHHHHcCCCEEEEcccCC-----CcchHHHHHHHHHHh--CCcEEEEEc-CCCCHHHHHHhhc-----ccceEEEEeee
Q 029661           40 VPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDL--GAKAGVVLN-PATSLSAIECVLD-----VVDLVLIMSVN  106 (190)
Q Consensus        40 i~~~~~~Gad~v~vh~e~~-----~~~~~~~~i~~i~~~--g~~~g~~i~-p~t~~~~~~~~~~-----~~d~i~~m~v~  106 (190)
                      .+.+.+.||+-+=+-.-.+     ..+.+.+.++.+++.  +..+=+.+. +.-+.+.+....+     .+|+|-   ..
T Consensus        80 ~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIK---Ts  156 (221)
T PRK00507         80 AKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVK---TS  156 (221)
T ss_pred             HHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEE---cC
Confidence            4667888998776632211     122344455555553  433333332 2222233333221     378663   34


Q ss_pred             cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661          107 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus       107 pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      .|++   ....+++.++.+++..+   .++.|-+.|||+ .+++.+++++||+-+
T Consensus       157 TG~~---~~gat~~~v~~m~~~~~---~~~~IKasGGIrt~~~a~~~i~aGA~ri  205 (221)
T PRK00507        157 TGFS---TGGATVEDVKLMRETVG---PRVGVKASGGIRTLEDALAMIEAGATRL  205 (221)
T ss_pred             CCCC---CCCCCHHHHHHHHHHhC---CCceEEeeCCcCCHHHHHHHHHcCcceE
Confidence            4653   12356777777777664   347899999999 799999999999976

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=93.53  E-value=0.38  Score=43.42  Aligned_cols=78  Identities=23%  Similarity=0.307  Sum_probs=54.7

Q ss_pred             CcEEEEEcCC-CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHH
Q 029661           75 AKAGVVLNPA-TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYK  151 (190)
Q Consensus        75 ~~~g~~i~p~-t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~  151 (190)
                      ..+|.++.+. ...++.+.+++. +|.|.+=+.    .|  ....+++.++++|+..++    ..| +.|+|. .+....
T Consensus       237 l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~----~g--~~~~~~~~i~~ik~~~p~----~~v-i~g~v~t~e~a~~  305 (505)
T PLN02274        237 LLVGAAIGTRESDKERLEHLVKAGVDVVVLDSS----QG--DSIYQLEMIKYIKKTYPE----LDV-IGGNVVTMYQAQN  305 (505)
T ss_pred             EEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCC----CC--CcHHHHHHHHHHHHhCCC----CcE-EEecCCCHHHHHH
Confidence            4467788764 336788887764 898876332    23  233567778888876542    344 567776 799999


Q ss_pred             HHHcCCCEEEEc
Q 029661          152 VIEAGANALVAG  163 (190)
Q Consensus       152 ~~~aGad~~VvG  163 (190)
                      +.++|||++++|
T Consensus       306 a~~aGaD~i~vg  317 (505)
T PLN02274        306 LIQAGVDGLRVG  317 (505)
T ss_pred             HHHcCcCEEEEC
Confidence            999999999886

>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes

Probab=93.50  E-value=0.95  Score=39.41  Aligned_cols=149  Identities=18%  Similarity=0.131  Sum_probs=79.1

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHh
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV   93 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~   93 (190)
                      +.++.+.+.++.|+.+  +..||+-+-+.+-.++-.-..++.-.  .++.+++.+.++++|..+++.-  ..+++.++++
T Consensus        88 ~~vk~V~~a~~~PLIL--~~~D~evl~aale~~~~~kpLL~aAt--~eNyk~m~~lA~~y~~pl~v~s--p~Dln~lk~L  161 (386)
T PF03599_consen   88 KAVKKVAEAVDVPLIL--CGCDPEVLKAALEACAGKKPLLYAAT--EENYKAMAALAKEYGHPLIVSS--PIDLNLLKQL  161 (386)
T ss_dssp             HHHHHHHHC-SSEEEE--ESSHHHHHHHHHHHTTTS--EEEEEB--TTTHHHHHHHHHHCT-EEEEE---SSCHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEE--EeCCHHHHHHHHHHhCcCCcEEeEcC--HHHHHHHHHHHHHcCCeEEEEe--cccHHHHHHH
Confidence            4566666667888887  77888866555555555566665543  5689999999999998876633  2356555554


Q ss_pred             hc---c--c-ceEEEEeeecCCCC-cccchhhHHHHHHHHHHHh--hcCCCCeEEEeCCCCcccHH-----HHHHcCCCE
Q 029661           94 LD---V--V-DLVLIMSVNPGFGG-QSFIESQVKKISDLRRMCL--EKGVNPWIEVDGGVGPKNAY-----KVIEAGANA  159 (190)
Q Consensus        94 ~~---~--~-d~i~~m~v~pG~~g-q~~~~~~~~ki~~~~~~~~--~~~~~~~i~vdGGI~~e~~~-----~~~~aGad~  159 (190)
                      -.   .  + |.|+    +||... -.-..+++....++|..--  ++-+.+++ +..+.+....+     .++..+||+
T Consensus       162 n~~l~~~Gv~dIVl----Dpgt~~lGyGie~t~s~~~rIRraALk~Dr~lgyPi-I~~~~~aw~~~e~~~~~~i~kYa~I  236 (386)
T PF03599_consen  162 NIKLTELGVKDIVL----DPGTRALGYGIEYTYSNMERIRRAALKGDRPLGYPI-ITFPTEAWKAKEADAVAFIAKYASI  236 (386)
T ss_dssp             HHHHHTTT-GGEEE----E---SSTTTTHHHHHHHHHHHHHHHHHT-GGG-S-B-EECHHHCTCCHHHHHHHHHHTT-SE
T ss_pred             HHHHHhcCcccEEe----cCCcccchhHHHHHHHHHHHHHHHHhccCcccCCce-eecchhccchhHHHHHHHHHhhCcE
Confidence            32   2  2 4443    666542 1123455555555554422  23355676 34555532221     367889999


Q ss_pred             EEEcccccCCCCHHHHHHH
Q 029661          160 LVAGSAVFGAKDYAEAIKG  178 (190)
Q Consensus       160 ~VvGsaI~~~~dp~~~~~~  178 (190)
                      +|+-     ..++.+.+-.
T Consensus       237 iVl~-----~~~~~~~lpl  250 (386)
T PF03599_consen  237 IVLH-----DMEPWELLPL  250 (386)
T ss_dssp             EEES--------HHHHHHH
T ss_pred             EEEc-----CCCHHHHHHH
Confidence            9875     3566655544

; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes

Probab=93.47  E-value=3.1  Score=34.17  Aligned_cols=61  Identities=26%  Similarity=0.302  Sum_probs=39.8

Q ss_pred             HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEE-EcccCCCcchHHHHHHHHHHhCCcEEEEEc
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN   82 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~-vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~   82 (190)
                      .|+.|++..+.|+-+|  +.+|. .++.+.+.|+++|- +-.+.   .+ .+.++.++++|..+.+.-.
T Consensus        67 ~v~~i~~~~~~plSID--T~~~~-v~e~al~~G~~iINdisg~~---~~-~~~~~l~~~~~~~vV~m~~  128 (257)
T cd00739          67 VLEALRGELDVLISVD--TFRAE-VARAALEAGADIINDVSGGS---DD-PAMLEVAAEYGAPLVLMHM  128 (257)
T ss_pred             HHHHHHhcCCCcEEEe--CCCHH-HHHHHHHhCCCEEEeCCCCC---CC-hHHHHHHHHcCCCEEEECC
Confidence            4566776556776554  34555 56677778999877 44442   12 5678888999988877543

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.

>TIGR01064 pyruv_kin pyruvate kinase

Probab=93.47  E-value=2.5  Score=37.88  Aligned_cols=139  Identities=13%  Similarity=0.161  Sum_probs=83.6

Q ss_pred             HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCC-Ccccc
Q 029661           40 VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFG-GQSFI  115 (190)
Q Consensus        40 i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~-gq~~~  115 (190)
                      ++.+.+.|+|+|.+.--. +.+++..+-+.+.+.+ ..+.+...-+|+  ++.+.+++...|-+++-.-+-|.. |   .
T Consensus       177 l~~~~~~~~d~I~lskV~-sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi~iG~gDL~~~lg---~  252 (473)
T TIGR01064       177 LKFGVEQGVDMVAASFVR-TAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGIMVARGDLGVEIP---A  252 (473)
T ss_pred             HHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcEEEchHHHHhhcC---c
Confidence            566788999999997443 3556776777776655 244444333555  577888887778665522221111 1   1


Q ss_pred             hhhHHHHHHHHHHHhhcCCCCeEEEeC--------CC-----CcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661          116 ESQVKKISDLRRMCLEKGVNPWIEVDG--------GV-----GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS  182 (190)
Q Consensus       116 ~~~~~ki~~~~~~~~~~~~~~~i~vdG--------GI-----~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~  182 (190)
                      ++...-.+++-......+.  +..+..        .-     ....+..++..|+|.+.+++-..-...|.++++.+++.
T Consensus       253 ~~l~~~~~~ii~aaraag~--pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I  330 (473)
T TIGR01064       253 EEVPIAQKKMIRKCNRAGK--PVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKI  330 (473)
T ss_pred             HHHHHHHHHHHHHHHHcCC--CEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHH
Confidence            2233223333333333332  222222        11     12467778888999999998777668999999998875


Q ss_pred             hc
Q 029661          183 KR  184 (190)
Q Consensus       183 ~~  184 (190)
                      +.
T Consensus       331 ~~  332 (473)
T TIGR01064       331 AK  332 (473)
T ss_pred             HH
Confidence            53

This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily

Probab=93.44  E-value=1.1  Score=38.12  Aligned_cols=119  Identities=11%  Similarity=0.066  Sum_probs=72.0

Q ss_pred             ChHHHHH---HHHHcCCCEEEEcccCCC-----cchHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhhcccceEEEE
Q 029661           35 EPEQRVP---DFIKAGADIVSVHCEQSS-----TIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVDLVLIM  103 (190)
Q Consensus        35 dp~~~i~---~~~~~Gad~v~vh~e~~~-----~~~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m  103 (190)
                      +|+.+.+   .+.+.|.+.+=+|.-...     .+...+.++++|+.   +..+.+..|...+.+...++++..+-.-  
T Consensus       139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~--  216 (357)
T cd03316         139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYD--  216 (357)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccC--
Confidence            4665544   456789999999865311     12234667777773   5677777887777766666654432110  


Q ss_pred             eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-CCEEEEc
Q 029661          104 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG  163 (190)
Q Consensus       104 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-ad~~VvG  163 (190)
                         +.+--|++.+..++.++++|+..     +++|..|..+. ++.+..+++.| +|++.+-
T Consensus       217 ---i~~iEqP~~~~~~~~~~~l~~~~-----~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k  270 (357)
T cd03316         217 ---LFWFEEPVPPDDLEGLARLRQAT-----SVPIAAGENLYTRWEFRDLLEAGAVDIIQPD  270 (357)
T ss_pred             ---CCeEcCCCCccCHHHHHHHHHhC-----CCCEEeccccccHHHHHHHHHhCCCCEEecC
Confidence               11123445544455566666542     46888888886 78888777654 6766543

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).

>PRK12656 fructose-6-phosphate aldolase; Reviewed

Probab=93.44  E-value=3.4  Score=33.29  Aligned_cols=158  Identities=15%  Similarity=0.109  Sum_probs=93.5

Q ss_pred             HHHHHhccC-C-CCcEEEEEeecChHHHHHHH---H-HcCCCEEE-EcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC
Q 029661           14 LVVDALRPV-T-DLPLDVHLMIVEPEQRVPDF---I-KAGADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS   86 (190)
Q Consensus        14 ~~v~~i~~~-~-~~~i~~hlmv~dp~~~i~~~---~-~~Gad~v~-vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~   86 (190)
                      +.+++|++. + +.++.+...-.|.+..++++   . ..|-+.+. ++.-    .+--+.++.+++.|+++-+.+-- ++
T Consensus        42 ~~~~~i~~~i~~~~~vs~ev~~~~~~~mi~eA~~l~~~~~~nv~VKIP~T----~~Gl~Ai~~L~~~Gi~vn~T~if-s~  116 (222)
T PRK12656         42 ERIREVREIIGDEASIHVQVVAQDYEGILKDAHEIRRQCGDDVYIKVPVT----PAGLAAIKTLKAEGYHITATAIY-TV  116 (222)
T ss_pred             HHHHHHHHHhCCCCcEEEEEEECCHHHHHHHHHHHHHHhCCCEEEEeCCC----HHHHHHHHHHHHCCCceEEeeeC-CH
Confidence            456667665 3 35676666667777766553   2 34544444 3432    23446777888889988765431 22


Q ss_pred             HHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccc
Q 029661           87 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV  166 (190)
Q Consensus        87 ~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI  166 (190)
                      -+.+.-....++||.   ..-|--. .......+.++++++++...+++.+|-+.-=-+++++-++..+|+|.+-++-.+
T Consensus       117 ~Qa~~Aa~aGa~yvs---PyvgRi~-d~g~D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp~~v  192 (222)
T PRK12656        117 FQGLLAIEAGADYLA---PYYNRME-NLNIDSNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQAVTAGPDV  192 (222)
T ss_pred             HHHHHHHHCCCCEEe---cccchhh-hcCCCHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCCEEecCHHH
Confidence            222222334567763   2222100 001112456788888887777788885555455899999999999999999777


Q ss_pred             cC----CCCHHHHHHHHH
Q 029661          167 FG----AKDYAEAIKGIK  180 (190)
Q Consensus       167 ~~----~~dp~~~~~~l~  180 (190)
                      ++    .+-..+.++.+.
T Consensus       193 l~~l~~~p~t~~~~~~F~  210 (222)
T PRK12656        193 FEAAFAMPSIQKAVDDFA  210 (222)
T ss_pred             HHHHhcCCcHHHHHHHHH
Confidence            64    344455555553

>PLN02858 fructose-bisphosphate aldolase

Probab=93.39  E-value=1.9  Score=43.71  Aligned_cols=147  Identities=18%  Similarity=0.195  Sum_probs=96.0

Q ss_pred             hccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC-cch---HHHHHHHHHHhCCcE----EEE--E------c
Q 029661           19 LRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS-TIH---LHRTLNQIKDLGAKA----GVV--L------N   82 (190)
Q Consensus        19 i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~-~~~---~~~~i~~i~~~g~~~----g~~--i------~   82 (190)
                      +.+..++|+-+||==....+.+..+.++|.+.|-+=....+ .++   -.++++.++.+|+.+    |-.  -      .
T Consensus      1164 ~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~ 1243 (1378)
T PLN02858       1164 AAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVE 1243 (1378)
T ss_pred             HHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccc
Confidence            33346789999985554456788999999999988544322 122   356777788877654    221  0      0


Q ss_pred             ----CCCCHHHHHHhhcc--cceEE--EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--cccHHHH
Q 029661           83 ----PATSLSAIECVLDV--VDLVL--IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKV  152 (190)
Q Consensus        83 ----p~t~~~~~~~~~~~--~d~i~--~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~~~~~  152 (190)
                          .-|..+..+++++.  +|.+.  +-++| |.....-..--+++++++++.+..  .++++..=||-.  .+.++++
T Consensus      1244 ~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~H-G~Y~~~~p~l~~~~l~~i~~~~~~--~~vpLVlHGgSG~~~~~~~~a 1320 (1378)
T PLN02858       1244 EYEAKLTDVDQAKEFIDETGIDALAVCIGNVH-GKYPASGPNLRLDLLKELRALSSK--KGVLLVLHGASGLPESLIKEC 1320 (1378)
T ss_pred             ccccCCCCHHHHHHHHHhcCCcEEeeeccccc-ccCCCCCCccCHHHHHHHHHHhcC--CCCcEEEeCCCCCCHHHHHHH
Confidence                13566777787764  78764  33344 222110122347778888887642  247888888765  6899999


Q ss_pred             HHcCCCEEEEcccccC
Q 029661          153 IEAGANALVAGSAVFG  168 (190)
Q Consensus       153 ~~aGad~~VvGsaI~~  168 (190)
                      ++.|..-|=++|.+..
T Consensus      1321 i~~Gi~KiNi~T~~~~ 1336 (1378)
T PLN02858       1321 IENGVRKFNVNTEVRT 1336 (1378)
T ss_pred             HHcCCeEEEeCHHHHH
Confidence            9999999999998754

>PRK12653 fructose-6-phosphate aldolase; Reviewed

Probab=93.33  E-value=3.5  Score=33.14  Aligned_cols=159  Identities=16%  Similarity=0.088  Sum_probs=93.6

Q ss_pred             HHHHHhccCC-C-CcEEEEEeecChHHHHHH---HHHcCCCEEE-EcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661           14 LVVDALRPVT-D-LPLDVHLMIVEPEQRVPD---FIKAGADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL   87 (190)
Q Consensus        14 ~~v~~i~~~~-~-~~i~~hlmv~dp~~~i~~---~~~~Gad~v~-vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~   87 (190)
                      +.+++|++.. + -++.+...-.|.+..+++   +.+.+-+.++ ++.    ...=-+.++.+++.|+++-+...- +..
T Consensus        41 ~~~~~i~~~~~~~~~v~~Qv~~~d~e~mi~ea~~l~~~~~ni~IKIP~----T~~Gl~A~~~L~~~GI~vn~T~vf-s~~  115 (220)
T PRK12653         41 VVLPQLHEAMGGQGRLFAQVMATTAEGMVNDARKLRSIIADIVVKVPV----TAEGLAAIKMLKAEGIPTLGTAVY-GAA  115 (220)
T ss_pred             HHHHHHHHHhCCCCcEEEEEecCCHHHHHHHHHHHHHhCCCEEEEeCC----CHHHHHHHHHHHHcCCCeeEEEec-CHH
Confidence            3456666542 2 256655555677666554   4555555443 332    222346777788889888664432 222


Q ss_pred             HHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccccc
Q 029661           88 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus        88 ~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~  167 (190)
                      +.+......++||..   .-|--. ......++.++++++++..++++..|-+..=-|.+++.++..+|+|.+-+.-.++
T Consensus       116 Qa~~Aa~aGa~yIsp---yvgR~~-~~g~dg~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip~~vl  191 (220)
T PRK12653        116 QGLLSALAGAEYVAP---YVNRID-AQGGSGIQTVTDLQQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESITLPLDVA  191 (220)
T ss_pred             HHHHHHhcCCcEEEe---ecChHh-hcCCChHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECCHHHH
Confidence            222222345777632   222110 1112345667888888877677788765555558888888899999999997766


Q ss_pred             C----CCCHHHHHHHHHH
Q 029661          168 G----AKDYAEAIKGIKT  181 (190)
Q Consensus       168 ~----~~dp~~~~~~l~~  181 (190)
                      +    .+...+.++.+.+
T Consensus       192 ~~l~~~p~t~~~~~~F~~  209 (220)
T PRK12653        192 QQMISYPAVDAAVAKFEQ  209 (220)
T ss_pred             HHHHcCCchHHHHHHHHH
Confidence            4    4555666666654

>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]

Probab=93.28  E-value=3  Score=33.27  Aligned_cols=129  Identities=18%  Similarity=0.259  Sum_probs=76.4

Q ss_pred             HHHHHHcCCCEEEE-ccc-----CCCcchHHHHHHHHHHhCCcEEEEEcCCCC-------HH----HHHHhhccc-ce-E
Q 029661           40 VPDFIKAGADIVSV-HCE-----QSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LS----AIECVLDVV-DL-V  100 (190)
Q Consensus        40 i~~~~~~Gad~v~v-h~e-----~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-------~~----~~~~~~~~~-d~-i  100 (190)
                      .+++.++|+++|++ |.|     -.+++.+.+-.+.+...|.++...|.-.-.       .+    .+..+.+.+ |. -
T Consensus        79 ~~mlkd~G~~wVIlGHSERR~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~leeREaG~t~dVv~~Ql~aiad~v~~w~n  158 (247)
T KOG1643|consen   79 AEMLKDLGAEWVILGHSERRHVFGESDEFIADKTAHALAEGLKVIACIGETLEEREAGKTLDVVFRQLKAIADKVKDWSN  158 (247)
T ss_pred             HHHHHhCCCCEEEecchhhhhhhCCchHHHHHHHHHHHHcCCeEEEEecccHHhhhcCchHHHHHHHHHHHHHhcCCccc
Confidence            67789999999998 322     112455677778888999998887752211       11    122222222 11 0


Q ss_pred             EEEeeec----CCCCcccchhhHHHHHHHHHHHhhc-----CCCCeEEEeCCCCcccHHHHH-HcCCCEEEEcccccC
Q 029661          101 LIMSVNP----GFGGQSFIESQVKKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVFG  168 (190)
Q Consensus       101 ~~m~v~p----G~~gq~~~~~~~~ki~~~~~~~~~~-----~~~~~i~vdGGI~~e~~~~~~-~aGad~~VvGsaI~~  168 (190)
                      ++..-+|    |++--.-+.+.-+--..+|+...++     ....+|.-.|.+|..|.+++. +.-.|+|.+|.+=.+
T Consensus       159 iviAYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGGSV~g~N~~el~~~~diDGFLVGGaSLK  236 (247)
T KOG1643|consen  159 IVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGGSVNGGNCKELAKKPDIDGFLVGGASLK  236 (247)
T ss_pred             eEEEeeceeeecCCCCCCHHHHHHHHHHHHHHHhhcchhhhhhceEEEeccccccccHHHhcccccccceEEcCcccC
Confidence            1223344    5432222333344445566665432     223578899999999988774 456899999987665

>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form

Probab=93.25  E-value=4.1  Score=33.65  Aligned_cols=134  Identities=19%  Similarity=0.213  Sum_probs=75.0

Q ss_pred             HHHHHHcCCCEEEEcccCCC--cchHHHHHHHHH-HhCCcEEEEEc-CCCCHHHHHHhhc-----ccceEEEEeeecCCC
Q 029661           40 VPDFIKAGADIVSVHCEQSS--TIHLHRTLNQIK-DLGAKAGVVLN-PATSLSAIECVLD-----VVDLVLIMSVNPGFG  110 (190)
Q Consensus        40 i~~~~~~Gad~v~vh~e~~~--~~~~~~~i~~i~-~~g~~~g~~i~-p~t~~~~~~~~~~-----~~d~i~~m~v~pG~~  110 (190)
                      ++.+.+.|+|.|++-.-++.  ....-++.+.++ +.|+.+..=+. -+.+...++.++.     .++-|++++-+|-.+
T Consensus        21 ~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~  100 (272)
T TIGR00676        21 VDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPPKG  100 (272)
T ss_pred             HHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            56688899999999755421  122334556666 45888865333 2334334444432     267777766665432


Q ss_pred             C-----cccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc------c-------HHHHHHcCCCEEEEcccccCCCCH
Q 029661          111 G-----QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK------N-------AYKVIEAGANALVAGSAVFGAKDY  172 (190)
Q Consensus       111 g-----q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e------~-------~~~~~~aGad~~VvGsaI~~~~dp  172 (190)
                      +     ..|. ...+.|+.++++.+    ++.|  .++..||      +       +++=+++||| +++--.+|..+..
T Consensus       101 ~~~~~~~~f~-~a~~Li~~i~~~~~----~f~i--g~a~~Peghp~~~~~~~~~~~L~~K~~aGA~-f~iTQ~~fd~~~~  172 (272)
T TIGR00676       101 EGTPTPGGFN-YASELVEFIRNEFG----DFDI--GVAAYPEKHPEAPNLEEDIENLKRKVDAGAD-YAITQLFFDNDDY  172 (272)
T ss_pred             CCCCCCCCCC-CHHHHHHHHHHhcC----CeeE--EEEeCCCCCCCCCCHHHHHHHHHHHHHcCCC-eEeeccccCHHHH
Confidence            2     2344 56777777766532    2444  4444332      1       2222479999 5556677776555


Q ss_pred             HHHHHHHHH
Q 029661          173 AEAIKGIKT  181 (190)
Q Consensus       173 ~~~~~~l~~  181 (190)
                      .+.++++++
T Consensus       173 ~~~~~~~~~  181 (272)
T TIGR00676       173 YRFVDRCRA  181 (272)
T ss_pred             HHHHHHHHH
Confidence            555555544

This protein is an FAD-containing flavoprotein.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=93.24  E-value=1.2  Score=39.96  Aligned_cols=116  Identities=15%  Similarity=0.216  Sum_probs=69.2

Q ss_pred             HHHHHHHHcCCCEEEEcccCCC---cchHHHHHHHHHH-------h-CCcEEEEEcCC-CCHHHHHHhhc-ccceEEEEe
Q 029661           38 QRVPDFIKAGADIVSVHCEQSS---TIHLHRTLNQIKD-------L-GAKAGVVLNPA-TSLSAIECVLD-VVDLVLIMS  104 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~~---~~~~~~~i~~i~~-------~-g~~~g~~i~p~-t~~~~~~~~~~-~~d~i~~m~  104 (190)
                      +..+.+.+.+.+.+.+--+.+.   .-+...+++....       . ...++-++.+. .+.+.++.+++ .+|.+.+  
T Consensus       169 eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvdvivv--  246 (486)
T PRK05567        169 EALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVDVLVV--  246 (486)
T ss_pred             HHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCCEEEE--
Confidence            4456677777777766443210   1133444443321       1 12344444422 34677777665 4886533  


Q ss_pred             eecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEc
Q 029661          105 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG  163 (190)
Q Consensus       105 v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvG  163 (190)
                       +.. .|+  ....++.++++|+..+    +.++.+.++.+.+++..+.++|||++.+|
T Consensus       247 -D~a-~g~--~~~vl~~i~~i~~~~p----~~~vi~g~v~t~e~a~~l~~aGad~i~vg  297 (486)
T PRK05567        247 -DTA-HGH--SEGVLDRVREIKAKYP----DVQIIAGNVATAEAARALIEAGADAVKVG  297 (486)
T ss_pred             -ECC-CCc--chhHHHHHHHHHhhCC----CCCEEEeccCCHHHHHHHHHcCCCEEEEC
Confidence             211 132  2346777777776542    46788888899999999999999999886

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=93.13  E-value=3.3  Score=34.27  Aligned_cols=142  Identities=17%  Similarity=0.200  Sum_probs=80.6

Q ss_pred             CCHHHHHHhccC---CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661           11 IGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL   87 (190)
Q Consensus        11 ~G~~~v~~i~~~---~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~   87 (190)
                      +|.+.++.++++   .++++....+-..   .++.+.+. +|++-+....  ..+ ..+++++-+.|+.+++.-...-.+
T Consensus        75 ~g~~gl~~l~~~~~~~Gl~~~te~~d~~---~~~~l~~~-vd~~kIga~~--~~n-~~LL~~~a~~gkPV~lk~G~~~s~  147 (266)
T PRK13398         75 LGEEGLKILKEVGDKYNLPVVTEVMDTR---DVEEVADY-ADMLQIGSRN--MQN-FELLKEVGKTKKPILLKRGMSATL  147 (266)
T ss_pred             cHHHHHHHHHHHHHHcCCCEEEeeCChh---hHHHHHHh-CCEEEECccc--ccC-HHHHHHHhcCCCcEEEeCCCCCCH
Confidence            455566666553   6777777555433   34445566 7889888764  333 357888888898888877766344


Q ss_pred             HHHHH---hhc---ccceEEEEeeecCC-CCcccchhh--HHHHHHHHHHHhhcCCCCeEEEeCC--CC-----cccHHH
Q 029661           88 SAIEC---VLD---VVDLVLIMSVNPGF-GGQSFIESQ--VKKISDLRRMCLEKGVNPWIEVDGG--VG-----PKNAYK  151 (190)
Q Consensus        88 ~~~~~---~~~---~~d~i~~m~v~pG~-~gq~~~~~~--~~ki~~~~~~~~~~~~~~~i~vdGG--I~-----~e~~~~  151 (190)
                      +.+..   ++.   .-+.+++   +-|+ +...+....  +..+..+|+.     ++++|.+|-+  .+     +.....
T Consensus       148 ~e~~~A~e~i~~~Gn~~i~L~---~rG~~t~~~Y~~~~vdl~~i~~lk~~-----~~~pV~~D~sHs~G~~~~v~~~~~a  219 (266)
T PRK13398        148 EEWLYAAEYIMSEGNENVVLC---ERGIRTFETYTRNTLDLAAVAVIKEL-----SHLPIIVDPSHATGRRELVIPMAKA  219 (266)
T ss_pred             HHHHHHHHHHHhcCCCeEEEE---ECCCCCCCCCCHHHHHHHHHHHHHhc-----cCCCEEEeCCCcccchhhHHHHHHH
Confidence            33322   222   1244443   3333 111122222  3334444433     3467888633  23     334556


Q ss_pred             HHHcCCCEEEEccccc
Q 029661          152 VIEAGANALVAGSAVF  167 (190)
Q Consensus       152 ~~~aGad~~VvGsaI~  167 (190)
                      .+.+|||++++=+-+.
T Consensus       220 Ava~Ga~Gl~iE~H~~  235 (266)
T PRK13398        220 AIAAGADGLMIEVHPE  235 (266)
T ss_pred             HHHcCCCEEEEeccCC
Confidence            7889999999887765

>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]

Probab=93.04  E-value=1.6  Score=33.82  Aligned_cols=81  Identities=20%  Similarity=0.239  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhCCcEEE--EEcCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEE
Q 029661           64 HRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE  139 (190)
Q Consensus        64 ~~~i~~i~~~g~~~g~--~i~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~  139 (190)
                      ...+..+|++|+.+.-  ++-.+..++...+.+.  .+|.|-+   -||.     .|..+++|   .+.     .+.+|-
T Consensus        85 ~~~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEv---LPGv-----~Pkvi~~i---~~~-----t~~piI  148 (181)
T COG1954          85 SNVIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEV---LPGV-----MPKVIKEI---TEK-----THIPII  148 (181)
T ss_pred             HHHHHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEE---cCcc-----cHHHHHHH---HHh-----cCCCEE
Confidence            3568888999998863  4444455555444443  4788865   4772     44444333   332     346774


Q ss_pred             EeCCCC-cccHHHHHHcCCCEE
Q 029661          140 VDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus       140 vdGGI~-~e~~~~~~~aGad~~  160 (190)
                      .+|=|. .|.+.++.++||-.+
T Consensus       149 AGGLi~t~Eev~~Al~aGA~av  170 (181)
T COG1954         149 AGGLIETEEEVREALKAGAVAV  170 (181)
T ss_pred             eccccccHHHHHHHHHhCcEEE
Confidence            444455 588999999998654

>PRK09206 pyruvate kinase; Provisional

Probab=93.03  E-value=3.6  Score=36.92  Aligned_cols=140  Identities=14%  Similarity=0.132  Sum_probs=84.4

Q ss_pred             HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCCCccc-
Q 029661           39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFGGQSF-  114 (190)
Q Consensus        39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~gq~~-  114 (190)
                      .++...+.|+|+|.+-.-- +.+++.++-+.+.+.| -.+.+...-+|+  ++.+.+++..+|-|++-   ||-=|... 
T Consensus       177 di~f~~~~~vD~ia~SFVr-~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~DgImVa---RGDLgvelg  252 (470)
T PRK09206        177 DLIFGCEQGVDFVAASFIR-KRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIMVA---RGDLGVEIP  252 (470)
T ss_pred             HHHHHHHcCCCEEEEcCCC-CHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCEEEEC---cchhhhhcC
Confidence            4666789999999986543 3456777777777766 356665554554  68889999889998862   22112111 


Q ss_pred             chhhHHHHHHHHHHHhhcCCCCeEEEeCCC----------C-c--ccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661          115 IESQVKKISDLRRMCLEKGVNPWIEVDGGV----------G-P--KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       115 ~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI----------~-~--e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~  181 (190)
                      .+......+++-+.+.+.+.  ++-+.-=+          | .  ..+..++.-|+|.+.+..-=-....|.++++.+.+
T Consensus       253 ~e~vp~~qk~ii~~~~~~gk--pvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV~~m~~  330 (470)
T PRK09206        253 VEEVIFAQKMMIEKCNRARK--VVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMAT  330 (470)
T ss_pred             HHHHHHHHHHHHHHHHHcCC--CEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHHHHHHH
Confidence            23333344444444444433  22222211          1 1  14556777899999885433334688999988877


Q ss_pred             hhc
Q 029661          182 SKR  184 (190)
Q Consensus       182 ~~~  184 (190)
                      .+.
T Consensus       331 I~~  333 (470)
T PRK09206        331 ICE  333 (470)
T ss_pred             HHH
Confidence            553

>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]

Probab=92.96  E-value=4.9  Score=34.42  Aligned_cols=163  Identities=20%  Similarity=0.240  Sum_probs=97.8

Q ss_pred             HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-----------CcchHHHHHHHHHHhCCcE--EEE
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-----------STIHLHRTLNQIKDLGAKA--GVV   80 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-----------~~~~~~~~i~~i~~~g~~~--g~~   80 (190)
                      +.++.+++.++.++-+-+=..+ .+..++++++|+|.+.--.|+.           +-++--.+++.+|+.|+++  |..
T Consensus       122 ~~v~~Vk~~~~le~c~slG~l~-~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI  200 (335)
T COG0502         122 EAIKAVKEELGLEVCASLGMLT-EEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGI  200 (335)
T ss_pred             HHHHHHHHhcCcHHhhccCCCC-HHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceE
Confidence            3455556555655554443333 3467889999999998755541           1133457888999999998  455


Q ss_pred             EcCCCCH-HHHHH---hhc--ccceEEEEeeec--CCC-C-ccc-c-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC---
Q 029661           81 LNPATSL-SAIEC---VLD--VVDLVLIMSVNP--GFG-G-QSF-I-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG---  145 (190)
Q Consensus        81 i~p~t~~-~~~~~---~~~--~~d~i~~m~v~p--G~~-g-q~~-~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~---  145 (190)
                      +...-+. +++.-   +.+  .+|-|=++..+|  |+- + ++- . -+.++-|.-.|=+.++    ..|=+.||..   
T Consensus       201 ~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~----~~Ir~s~gr~~~~  276 (335)
T COG0502         201 VGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPK----SMIRLSAGRETML  276 (335)
T ss_pred             ecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCc----ceeEccCCccccc
Confidence            6555443 33332   222  167787777665  542 1 111 1 2335556666666654    4565667765   


Q ss_pred             cccHHHHHHcCCCEEEEcc-cccCC-CCHHHHHHHHHH
Q 029661          146 PKNAYKVIEAGANALVAGS-AVFGA-KDYAEAIKGIKT  181 (190)
Q Consensus       146 ~e~~~~~~~aGad~~VvGs-aI~~~-~dp~~~~~~l~~  181 (190)
                      ++....+..+|||.+.+|- .++.. .++++-.+.+++
T Consensus       277 ~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~  314 (335)
T COG0502         277 PELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKD  314 (335)
T ss_pred             HHHHHHHHHhccceeeecceEeecCCCCchhHHHHHHH
Confidence            4666778899999999997 66643 455544444444

>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=92.96  E-value=0.28  Score=40.80  Aligned_cols=60  Identities=17%  Similarity=0.178  Sum_probs=43.6

Q ss_pred             CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE
Q 029661           11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA   77 (190)
Q Consensus        11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~   77 (190)
                      -|.++++++|+.++.|+.-+.|...   .++.+.+. +|++=+.+..  . .-..+++++-+.|+-+
T Consensus        74 eGL~iL~~vk~~~glpvvTeV~~~~---q~~~vae~-~DilQIgAr~--~-rqtdLL~a~~~tgkpV  133 (290)
T PLN03033         74 EGLKILEKVKVAYDLPIVTDVHESS---QCEAVGKV-ADIIQIPAFL--C-RQTDLLVAAAKTGKII  133 (290)
T ss_pred             HHHHHHHHHHHHHCCceEEeeCCHH---HHHHHHhh-CcEEeeCcHH--H-HHHHHHHHHHccCCeE
Confidence            3667888888889999999877654   56677776 6999999874  2 2356777777766543

>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria

Probab=92.89  E-value=0.77  Score=37.27  Aligned_cols=42  Identities=26%  Similarity=0.321  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHcCCCEEEE---cccCCCcchHHHHHHHHHHhCCcE
Q 029661           36 PEQRVPDFIKAGADIVSV---HCEQSSTIHLHRTLNQIKDLGAKA   77 (190)
Q Consensus        36 p~~~i~~~~~~Gad~v~v---h~e~~~~~~~~~~i~~i~~~g~~~   77 (190)
                      |.++++.+..+|.|.+++   |...-..+-+.++++.+++.|+..
T Consensus        64 ~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~  108 (250)
T PF09587_consen   64 PPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPY  108 (250)
T ss_pred             CHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcE
Confidence            455789999999999998   533211345778999999999774

Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].

>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit

Probab=92.78  E-value=3.1  Score=30.89  Aligned_cols=102  Identities=20%  Similarity=0.250  Sum_probs=53.0

Q ss_pred             HHHHHHHhCCcEEEEEcCCCCHHHHHHhh-c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCC-CCeEEEeC
Q 029661           66 TLNQIKDLGAKAGVVLNPATSLSAIECVL-D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDG  142 (190)
Q Consensus        66 ~i~~i~~~g~~~g~~i~p~t~~~~~~~~~-~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~-~~~i~vdG  142 (190)
                      +...++.+|.++. .+-...|.+.+-+-+ + .+|.|.+-+.. |.        +...++++.+.+.+++. +..+.+.|
T Consensus        21 v~~~l~~~GfeVi-~LG~~v~~e~~v~aa~~~~adiVglS~l~-~~--------~~~~~~~~~~~l~~~gl~~~~vivGG   90 (134)
T TIGR01501        21 LDHAFTNAGFNVV-NLGVLSPQEEFIKAAIETKADAILVSSLY-GH--------GEIDCKGLRQKCDEAGLEGILLYVGG   90 (134)
T ss_pred             HHHHHHHCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEeccc-cc--------CHHHHHHHHHHHHHCCCCCCEEEecC
Confidence            3445566777653 334445554433322 2 47777653332 21        22234444444444543 34444444


Q ss_pred             C--CCcccHH----HHHHcCCCEEEEcccccCC-CCHHHHHHHHHHhh
Q 029661          143 G--VGPKNAY----KVIEAGANALVAGSAVFGA-KDYAEAIKGIKTSK  183 (190)
Q Consensus       143 G--I~~e~~~----~~~~aGad~~VvGsaI~~~-~dp~~~~~~l~~~~  183 (190)
                      +  |.++...    ++.+.|.|.+      |.. ..+++.+..+++.+
T Consensus        91 ~~vi~~~d~~~~~~~l~~~Gv~~v------F~pgt~~~~iv~~l~~~~  132 (134)
T TIGR01501        91 NLVVGKQDFPDVEKRFKEMGFDRV------FAPGTPPEVVIADLKKDL  132 (134)
T ss_pred             CcCcChhhhHHHHHHHHHcCCCEE------ECcCCCHHHHHHHHHHHh
Confidence            4  3444443    5889997644      433 46777788887755

This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=92.69  E-value=5.9  Score=34.13  Aligned_cols=149  Identities=14%  Similarity=0.135  Sum_probs=94.1

Q ss_pred             HHHHhccCC-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC--------cchH---HHHHHHHHHhCCcE----E
Q 029661           15 VVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS--------TIHL---HRTLNQIKDLGAKA----G   78 (190)
Q Consensus        15 ~v~~i~~~~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~--------~~~~---~~~i~~i~~~g~~~----g   78 (190)
                      .++.+.+.. ++|+.+||==..-.+.+..+.++|.+.|-+=....+        .+++   .++++.++..|+.+    |
T Consensus        65 ~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG  144 (347)
T PRK13399         65 MVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELG  144 (347)
T ss_pred             HHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence            445555444 589999985443455788999999999988544211        1122   46777788777655    2


Q ss_pred             EEE----------------------cCCCCHHHHHHhhcc--cceEE--EEeeecCCCCcccch----hhHHHHHHHHHH
Q 029661           79 VVL----------------------NPATSLSAIECVLDV--VDLVL--IMSVNPGFGGQSFIE----SQVKKISDLRRM  128 (190)
Q Consensus        79 ~~i----------------------~p~t~~~~~~~~~~~--~d~i~--~m~v~pG~~gq~~~~----~~~~ki~~~~~~  128 (190)
                      -.-                      ..-|..+...++.+.  +|.+.  +-++| |.......|    --+++++++++.
T Consensus       145 ~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~H-G~Yk~~~~p~~~~L~~drl~eI~~~  223 (347)
T PRK13399        145 CLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSH-GAYKFTRKPDGDILAIDRIEEIHAR  223 (347)
T ss_pred             eccCcccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhcccc-CCcCCCCCCChhhccHHHHHHHHhh
Confidence            110                      013556777777753  77653  33444 222111012    236778877776


Q ss_pred             HhhcCCCCeEEEeCCCC-----------------------cccHHHHHHcCCCEEEEcccccC
Q 029661          129 CLEKGVNPWIEVDGGVG-----------------------PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       129 ~~~~~~~~~i~vdGGI~-----------------------~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      ++    ++++..=||-.                       .|.++++++.|..-|=++|.+..
T Consensus       224 v~----~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~  282 (347)
T PRK13399        224 LP----NTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRL  282 (347)
T ss_pred             cC----CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHH
Confidence            52    36788877775                       48899999999999999998754

>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional

Probab=92.66  E-value=2  Score=39.01  Aligned_cols=114  Identities=15%  Similarity=0.219  Sum_probs=72.8

Q ss_pred             HHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHhCCcEEEEEc-----CCCCHHHHHHhhc---
Q 029661           38 QRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLN-----PATSLSAIECVLD---   95 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~g~~~g~~i~-----p~t~~~~~~~~~~---   95 (190)
                      .-++.+.++|++.|++-.-+.              ..+.+.+.++.+|++|.++-+...     ..++.+.+.++..   
T Consensus        89 ~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~  168 (524)
T PRK12344         89 PNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAA  168 (524)
T ss_pred             HHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHH
Confidence            346778899999988853210              022355788899999998765322     2355665555432   


Q ss_pred             --ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661           96 --VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        96 --~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~  160 (190)
                        .+|.|.+    |.+.|...+..+.+.++.+++..     +.+|.+    |-|...-|.-..+++|||.+
T Consensus       169 ~~Gad~i~l----~DTvG~~~P~~v~~li~~l~~~~-----~v~i~~H~HND~GlA~ANslaAi~aGa~~V  230 (524)
T PRK12344        169 EAGADWVVL----CDTNGGTLPHEVAEIVAEVRAAP-----GVPLGIHAHNDSGCAVANSLAAVEAGARQV  230 (524)
T ss_pred             hCCCCeEEE----ccCCCCcCHHHHHHHHHHHHHhc-----CCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence              2676653    55556656666677777777654     245554    55666567777889999965

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=92.64  E-value=2.4  Score=33.94  Aligned_cols=120  Identities=17%  Similarity=0.079  Sum_probs=62.5

Q ss_pred             cChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC-------CCCH----HHHHHhhc-ccceEE
Q 029661           34 VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP-------ATSL----SAIECVLD-VVDLVL  101 (190)
Q Consensus        34 ~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p-------~t~~----~~~~~~~~-~~d~i~  101 (190)
                      .||.+.++.+.+.|++.++++.-.     +..+.+.. ..+....+-++.       ..+.    ..+++.+. .+|.+.
T Consensus        21 ~d~~~~~~~~~~~g~~av~v~~~~-----~~~~~~~~-~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~   94 (235)
T cd00958          21 EDPEETVKLAAEGGADAVALTKGI-----ARAYGREY-AGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGADAVG   94 (235)
T ss_pred             cCHHHHHHHHHhcCCCEEEeChHH-----HHhccccc-CCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCCCEEE
Confidence            578889999999999999998542     11111111 112121111211       1111    12333333 366654


Q ss_pred             EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE--eCC-----CCcccHHH----HHHcCCCEEEEc
Q 029661          102 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV--DGG-----VGPKNAYK----VIEAGANALVAG  163 (190)
Q Consensus       102 ~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v--dGG-----I~~e~~~~----~~~aGad~~VvG  163 (190)
                      ++-. .|..   ...+.++.++++++...+.+..+-+.+  +|-     .+.+++..    +.++|||++-..
T Consensus        95 ~~~~-~~~~---~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~  163 (235)
T cd00958          95 VTVY-VGSE---EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTK  163 (235)
T ss_pred             EEEe-cCCc---hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEec
Confidence            4333 2311   134567778888887766554443332  111     23445444    778899988774

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK10076 pyruvate formate lyase II activase; Provisional

Probab=92.57  E-value=1.8  Score=34.63  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=49.7

Q ss_pred             ChHHHHHHHHHc------CCCEEEEc-ccCCC-cchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEE
Q 029661           35 EPEQRVPDFIKA------GADIVSVH-CEQSS-TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI  102 (190)
Q Consensus        35 dp~~~i~~~~~~------Gad~v~vh-~e~~~-~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~  102 (190)
                      .|++.++.+.+.      +..+||+- .|..- .+-+.++++.+|+.|+.+.+..|-..+.+.++++++.+|.+++
T Consensus        20 t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~   95 (213)
T PRK10076         20 TLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLF   95 (213)
T ss_pred             CHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEE
Confidence            466666555433      55789885 34210 1225688999999999999999988898888999888998764

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily

Probab=92.56  E-value=3.4  Score=33.70  Aligned_cols=128  Identities=16%  Similarity=0.161  Sum_probs=72.3

Q ss_pred             CcEEEEEeecChHHH---HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhhcccc
Q 029661           25 LPLDVHLMIVEPEQR---VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVD   98 (190)
Q Consensus        25 ~~i~~hlmv~dp~~~---i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~~~~d   98 (190)
                      +|+-+-+-..+|+..   ++.+.+.|...+=+..-. ..+.-.+.++.+|+.   +.++.+..|...+.+...+++...+
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~-~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~  153 (265)
T cd03315          75 VRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGR-DPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALE  153 (265)
T ss_pred             eEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecCC-CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHH
Confidence            455443333466654   445677899988887532 122234567777774   4566667776666655555443321


Q ss_pred             eEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-CCEEEEc
Q 029661           99 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG  163 (190)
Q Consensus        99 ~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-ad~~VvG  163 (190)
                      -.-+.-++     |++.+..++.++++++..     +++|+.|+.+. ++.+..+++.+ +|++.+-
T Consensus       154 ~~~i~~iE-----eP~~~~d~~~~~~l~~~~-----~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k  210 (265)
T cd03315         154 DLGLDYVE-----QPLPADDLEGRAALARAT-----DTPIMADESAFTPHDAFRELALGAADAVNIK  210 (265)
T ss_pred             hcCCCEEE-----CCCCcccHHHHHHHHhhC-----CCCEEECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence            10000112     233333455556666543     47899999886 57777776654 7887764

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.

>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria

Probab=92.56  E-value=1.4  Score=38.82  Aligned_cols=46  Identities=13%  Similarity=0.184  Sum_probs=36.5

Q ss_pred             EEeCCCCcccHHHH-HHcC-CCEEEE-cccccCC-CCHHHHHHHHHHhhc
Q 029661          139 EVDGGVGPKNAYKV-IEAG-ANALVA-GSAVFGA-KDYAEAIKGIKTSKR  184 (190)
Q Consensus       139 ~vdGGI~~e~~~~~-~~aG-ad~~Vv-GsaI~~~-~dp~~~~~~l~~~~~  184 (190)
                      ...||+++.+++.+ ...| .|++.. |..|+.. +.+.+-++.+|+.++
T Consensus       335 v~sgG~~~~~vp~~~~~~G~~Dvi~~aGGGi~gHP~G~~aGa~A~rqA~e  384 (406)
T cd08207         335 VFSSGQWGGQAPPTYRRLGSVDLLYLAGGGIMAHPDGPAAGVRSLRQAWE  384 (406)
T ss_pred             eccCCCCHhHHHHHHHHhCCCceEEecCCceecCCCCchhHHHHHHHHHH
Confidence            48999999999866 5667 588776 8999987 678888888887654

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=92.55  E-value=1.7  Score=32.57  Aligned_cols=104  Identities=22%  Similarity=0.309  Sum_probs=56.5

Q ss_pred             HHHHHHHhCCcEEEEEcCCCCHHHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCC-CCeEEEeCC
Q 029661           66 TLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDGG  143 (190)
Q Consensus        66 ~i~~i~~~g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~-~~~i~vdGG  143 (190)
                      +-+..++.|+++...=...||.|.+...+ +.+|.|.+-+.. | +.....|.       +++.+.+.+. +..+.+.|=
T Consensus        32 ia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~-g-~h~~l~~~-------lve~lre~G~~~i~v~~GGv  102 (143)
T COG2185          32 IARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLD-G-GHLTLVPG-------LVEALREAGVEDILVVVGGV  102 (143)
T ss_pred             HHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEecc-c-hHHHHHHH-------HHHHHHHhCCcceEEeecCc
Confidence            44556667777654433345555555443 347777654333 2 12222233       3333334443 333445555


Q ss_pred             CCcccHHHHHHcCCCEEEEcccccCC-CCHHHHHHHHHHhhc
Q 029661          144 VGPKNAYKVIEAGANALVAGSAVFGA-KDYAEAIKGIKTSKR  184 (190)
Q Consensus       144 I~~e~~~~~~~aGad~~VvGsaI~~~-~dp~~~~~~l~~~~~  184 (190)
                      |.+++...+.+.|+|-+      |.. .+..+.++.++..+.
T Consensus       103 ip~~d~~~l~~~G~~~i------f~pgt~~~~~~~~v~~~l~  138 (143)
T COG2185         103 IPPGDYQELKEMGVDRI------FGPGTPIEEALSDLLTRLG  138 (143)
T ss_pred             cCchhHHHHHHhCccee------eCCCCCHHHHHHHHHHHHH
Confidence            55899999999998854      443 355667777665443

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=92.53  E-value=0.64  Score=35.85  Aligned_cols=85  Identities=20%  Similarity=0.330  Sum_probs=60.6

Q ss_pred             HHHHHHhccC-CCCc-EEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661           13 PLVVDALRPV-TDLP-LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI   90 (190)
Q Consensus        13 ~~~v~~i~~~-~~~~-i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~   90 (190)
                      .+.++++|+. +..+ +.+  -+.+.+ -.+.+.++|+|.|-+=-.  +.+++.++++.+++.+.++.+..+-.-..+.+
T Consensus        67 ~~av~~~~~~~~~~~~I~V--Ev~~~e-e~~ea~~~g~d~I~lD~~--~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni  141 (169)
T PF01729_consen   67 EEAVKAARQAAPEKKKIEV--EVENLE-EAEEALEAGADIIMLDNM--SPEDLKEAVEELRELNPRVKIEASGGITLENI  141 (169)
T ss_dssp             HHHHHHHHHHSTTTSEEEE--EESSHH-HHHHHHHTT-SEEEEES---CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTH
T ss_pred             HHHHHHHHHhCCCCceEEE--EcCCHH-HHHHHHHhCCCEEEecCc--CHHHHHHHHHHHhhcCCcEEEEEECCCCHHHH
Confidence            4567777775 4443 444  556644 456788899999988654  35778899999989998999998888777778


Q ss_pred             HHhhcc-cceEEE
Q 029661           91 ECVLDV-VDLVLI  102 (190)
Q Consensus        91 ~~~~~~-~d~i~~  102 (190)
                      .+|... +|++.+
T Consensus       142 ~~ya~~gvD~isv  154 (169)
T PF01729_consen  142 AEYAKTGVDVISV  154 (169)
T ss_dssp             HHHHHTT-SEEEE
T ss_pred             HHHHhcCCCEEEc
Confidence            888764 798865

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II

Probab=92.53  E-value=4.4  Score=34.74  Aligned_cols=152  Identities=11%  Similarity=0.122  Sum_probs=95.5

Q ss_pred             HHHHhccCCCCcEEEEEeecC--hHHHHHHHHHcC-----------CCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE
Q 029661           15 VVDALRPVTDLPLDVHLMIVE--PEQRVPDFIKAG-----------ADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA   77 (190)
Q Consensus        15 ~v~~i~~~~~~~i~~hlmv~d--p~~~i~~~~~~G-----------ad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~   77 (190)
                      .++...+..++|+.+||==..  ...++..+.++|           .+.|-+=....+. ++   -.++++.++..|+.+
T Consensus        76 ~~~~~A~~~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~V  155 (340)
T cd00453          76 HVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTL  155 (340)
T ss_pred             HHHHHHHHCCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence            444444556899999986554  457899999999           8888775433221 22   346677777777654


Q ss_pred             ----EEE--------Ec------CCCCHHHHHHhhcc------cceEE--EEeeecCCC-CcccchhhHHHHHHHHHHHh
Q 029661           78 ----GVV--------LN------PATSLSAIECVLDV------VDLVL--IMSVNPGFG-GQSFIESQVKKISDLRRMCL  130 (190)
Q Consensus        78 ----g~~--------i~------p~t~~~~~~~~~~~------~d~i~--~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~  130 (190)
                          |-.        ..      .-|..+...++.+.      +|.+.  +-++|--+. |.  ..-.+++++++++..+
T Consensus       156 EaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~--p~L~~~~L~~i~~~~~  233 (340)
T cd00453         156 EIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGN--VVLTPTILRDSQEYVS  233 (340)
T ss_pred             EEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCC--CccCHHHHHHHHHHHH
Confidence                222        00      13456777777653      55543  233441111 11  2234777788888774


Q ss_pred             h-cCC---CCeEEEeCCCC--cccHHHHHHcCCCEEEEcccccC
Q 029661          131 E-KGV---NPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       131 ~-~~~---~~~i~vdGGI~--~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      + +|.   ++++..=||-.  .+.++.+++.|+.-+=+++.+..
T Consensus       234 ~~~gl~~~~~pLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Te~~~  277 (340)
T cd00453         234 KKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQW  277 (340)
T ss_pred             hhcccCCCCCceEEeCCCCCCHHHHHHHHHcCCeEEEcccHHHH
Confidence            2 222   57788888766  58999999999999999987643

This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C

Probab=92.50  E-value=0.15  Score=41.81  Aligned_cols=47  Identities=23%  Similarity=0.385  Sum_probs=34.1

Q ss_pred             eCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhcccc
Q 029661          141 DGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQA  187 (190)
Q Consensus       141 dGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~~~~  187 (190)
                      ..||++++..++.++|+|++-.|--+|...|..+.+++-.+.++|+-
T Consensus        41 G~Git~~~~~~L~~~GvDviT~GNH~wdkkei~~~i~~~~~ilRPaN   87 (253)
T PF13277_consen   41 GFGITPKIAEELFKAGVDVITMGNHIWDKKEIFDFIDKEPRILRPAN   87 (253)
T ss_dssp             TSS--HHHHHHHHHHT-SEEE--TTTTSSTTHHHHHHH-SSEE--TT
T ss_pred             CCCCCHHHHHHHHhcCCCEEecCcccccCcHHHHHHhcCCCcEECCC
Confidence            56888999999999999999999999999988888888777777653

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=92.41  E-value=1.1  Score=38.17  Aligned_cols=96  Identities=19%  Similarity=0.152  Sum_probs=60.5

Q ss_pred             CcCCCCHHHHHHhccCCCCcEEEEEeec--C------hHHHHHHHHHcCCCEEEEcccCC---Ccc-h--------HHHH
Q 029661            7 PNITIGPLVVDALRPVTDLPLDVHLMIV--E------PEQRVPDFIKAGADIVSVHCEQS---STI-H--------LHRT   66 (190)
Q Consensus         7 pn~~~G~~~v~~i~~~~~~~i~~hlmv~--d------p~~~i~~~~~~Gad~v~vh~e~~---~~~-~--------~~~~   66 (190)
                      .+..+-.++++++++..++|+.+.+.+.  +      ..++++.+.++|+|.+++|.-..   ... .        -.+.
T Consensus       116 ~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~  195 (333)
T PRK11815        116 AEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDR  195 (333)
T ss_pred             cCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHH
Confidence            4445556788888887788999976442  2      23567788899999999996421   000 0        1345


Q ss_pred             HHHHHHhCCc-EEEEEcCCCCHHHHHHhhcccceEEE
Q 029661           67 LNQIKDLGAK-AGVVLNPATSLSAIECVLDVVDLVLI  102 (190)
Q Consensus        67 i~~i~~~g~~-~g~~i~p~t~~~~~~~~~~~~d~i~~  102 (190)
                      +..+++.-.. +.+.-.--++.+.++++++.+|.|++
T Consensus       196 i~~v~~~~~~iPVI~nGgI~s~eda~~~l~~aDgVmI  232 (333)
T PRK11815        196 VYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGVMI  232 (333)
T ss_pred             HHHHHHhCCCCeEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            6666665322 33333333567778888777887765

>PRK06267 hypothetical protein; Provisional

Probab=92.40  E-value=6.5  Score=33.74  Aligned_cols=111  Identities=20%  Similarity=0.182  Sum_probs=62.7

Q ss_pred             chHHHHHHHHHHhCCcE--EEEEcCCCCHHHHHHhhc-----ccceEEEE--eeecCCC--Ccc--cchhhHHHHHHHHH
Q 029661           61 IHLHRTLNQIKDLGAKA--GVVLNPATSLSAIECVLD-----VVDLVLIM--SVNPGFG--GQS--FIESQVKKISDLRR  127 (190)
Q Consensus        61 ~~~~~~i~~i~~~g~~~--g~~i~p~t~~~~~~~~~~-----~~d~i~~m--~v~pG~~--gq~--~~~~~~~ki~~~~~  127 (190)
                      ++..+.++.+++.|+++  ++.+.+....+.+.+.+.     .+|.+.+.  .-.||+.  +++  -..+.++-+.-.|-
T Consensus       153 ed~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl  232 (350)
T PRK06267        153 DKIKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRL  232 (350)
T ss_pred             HHHHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence            34567788899999995  455644444544444332     25665443  4446652  211  11344555666666


Q ss_pred             HHhhcCCCCeEEEeCCC--CcccHHHHHHcCCCEE----EEcccccCC-CCHHHHH
Q 029661          128 MCLEKGVNPWIEVDGGV--GPKNAYKVIEAGANAL----VAGSAVFGA-KDYAEAI  176 (190)
Q Consensus       128 ~~~~~~~~~~i~vdGGI--~~e~~~~~~~aGad~~----VvGsaI~~~-~dp~~~~  176 (190)
                      +.++    ..| +.||-  +.........+|||++    ..|-+++.. .++++-.
T Consensus       233 ~lP~----~~I-~~~~~~~~l~~~~~~~~aGaN~i~~~p~~g~ylt~~g~~~~~~~  283 (350)
T PRK06267        233 NFPK----IKI-ITGTWVDKLTNIGPLIMSGSNVITKFPLFSMYGTKEGKRVENEI  283 (350)
T ss_pred             HCCC----CCc-chhhHhHhcchhhHHhhcCcceeeccchhccCcccCCCCHHHHH
Confidence            6553    456 55552  2233344567999999    889888865 3444333

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=92.37  E-value=0.45  Score=39.67  Aligned_cols=145  Identities=14%  Similarity=0.154  Sum_probs=82.9

Q ss_pred             HHHHHHhccCCCCcEEEEEeec--Ch---HHHHHHHHHcCCCEEEEcc----------cCC---CcchHHHHHHHHHHhC
Q 029661           13 PLVVDALRPVTDLPLDVHLMIV--EP---EQRVPDFIKAGADIVSVHC----------EQS---STIHLHRTLNQIKDLG   74 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv~--dp---~~~i~~~~~~Gad~v~vh~----------e~~---~~~~~~~~i~~i~~~g   74 (190)
                      ...+++|...+++|+.+|+=+-  +|   .+.+..+.++|+.++++--          ...   +.++..+-|+++++.-
T Consensus        67 ~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~  146 (289)
T COG2513          67 LADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEAR  146 (289)
T ss_pred             HHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhc
Confidence            3456666666899999999872  44   4578889999999998831          110   1123334455555554


Q ss_pred             CcEEEEEcCCCC----------HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC
Q 029661           75 AKAGVVLNPATS----------LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG  143 (190)
Q Consensus        75 ~~~g~~i~p~t~----------~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG  143 (190)
                      ...-++|+--|+          +++.+-|.+ .+|.|..    ||..       ..+.++++.+-.+ ...-..+.-.|+
T Consensus       147 ~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~----~al~-------~~e~i~~f~~av~-~pl~~N~t~~g~  214 (289)
T COG2513         147 RDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFP----EALT-------DLEEIRAFAEAVP-VPLPANITEFGK  214 (289)
T ss_pred             cCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEcc----ccCC-------CHHHHHHHHHhcC-CCeeeEeeccCC
Confidence            445555554444          234444443 2566642    3321       1333333333321 001122333344


Q ss_pred             CCcccHHHHHHcCCCEEEEcccccCC
Q 029661          144 VGPKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       144 I~~e~~~~~~~aGad~~VvGsaI~~~  169 (190)
                      --.-++.++.++|...++-|...|++
T Consensus       215 tp~~~~~~L~~~Gv~~V~~~~~~~ra  240 (289)
T COG2513         215 TPLLTVAELAELGVKRVSYGLTAFRA  240 (289)
T ss_pred             CCCcCHHHHHhcCceEEEECcHHHHH
Confidence            33568899999999999999887764

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=92.36  E-value=1.7  Score=36.40  Aligned_cols=84  Identities=15%  Similarity=0.249  Sum_probs=62.6

Q ss_pred             HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHH
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC   92 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~   92 (190)
                      +.+++.|+. +..++.+  -+.+.+ -...+.++|+|+|-+=-.  +.+++.+.++.+++.+-++-+..+-+-..+.+.+
T Consensus       188 ~ai~~~r~~~~~~kIeV--Ev~tl~-ea~eal~~gaDiI~LDnm--~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~  262 (289)
T PRK07896        188 AALRAVRAAAPDLPCEV--EVDSLE-QLDEVLAEGAELVLLDNF--PVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAA  262 (289)
T ss_pred             HHHHHHHHhCCCCCEEE--EcCCHH-HHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHH
Confidence            567777764 5566666  556655 445567999999998655  3667888888877777778888888888888899


Q ss_pred             hhcc-cceEEE
Q 029661           93 VLDV-VDLVLI  102 (190)
Q Consensus        93 ~~~~-~d~i~~  102 (190)
                      |.+. +|+|.+
T Consensus       263 yA~tGvD~Is~  273 (289)
T PRK07896        263 YAETGVDYLAV  273 (289)
T ss_pred             HHhcCCCEEEe
Confidence            8876 999865

>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins

Probab=92.30  E-value=3.1  Score=32.67  Aligned_cols=94  Identities=16%  Similarity=0.160  Sum_probs=55.6

Q ss_pred             HHHHHHHhCCcEEEEEcCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCC--CCeEEEe
Q 029661           66 TLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV--NPWIEVD  141 (190)
Q Consensus        66 ~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~--~~~i~vd  141 (190)
                      +...++.+|.++ +.+.+++|.+.+.+.+.  .+|+|.+-+..+. .    .+...+-++.+|+.    +.  +++|.+.
T Consensus       102 v~~~l~~~G~~v-i~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~-~----~~~~~~~i~~lr~~----~~~~~~~i~vG  171 (201)
T cd02070         102 VATMLEANGFEV-IDLGRDVPPEEFVEAVKEHKPDILGLSALMTT-T----MGGMKEVIEALKEA----GLRDKVKVMVG  171 (201)
T ss_pred             HHHHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccccc-c----HHHHHHHHHHHHHC----CCCcCCeEEEE
Confidence            445677889988 66778889877776554  3777765322211 1    23333334444443    33  6788888


Q ss_pred             CCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 029661          142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI  179 (190)
Q Consensus       142 GGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l  179 (190)
                      |..=.+.  .....|||...        +|..++++..
T Consensus       172 G~~~~~~--~~~~~GaD~~~--------~da~~av~~~  199 (201)
T cd02070         172 GAPVNQE--FADEIGADGYA--------EDAAEAVAIA  199 (201)
T ss_pred             CCcCCHH--HHHHcCCcEEE--------CCHHHHHHHH
Confidence            8543332  44566999874        5666665543

A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=92.29  E-value=3.7  Score=35.42  Aligned_cols=143  Identities=16%  Similarity=0.157  Sum_probs=82.1

Q ss_pred             CCHHHHHHhc---cCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661           11 IGPLVVDALR---PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL   87 (190)
Q Consensus        11 ~G~~~v~~i~---~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~   87 (190)
                      +|.+-++.|+   +.+++++....|-.+   .++.+.+. +|++-+....  ..+ ..+++++-+.|+.+.+.-...-.+
T Consensus       149 ~g~~gl~~L~~~~~e~Gl~~~tev~d~~---~v~~~~~~-~d~lqIga~~--~~n-~~LL~~va~t~kPVllk~G~~~t~  221 (352)
T PRK13396        149 HGESALELLAAAREATGLGIITEVMDAA---DLEKIAEV-ADVIQVGARN--MQN-FSLLKKVGAQDKPVLLKRGMAATI  221 (352)
T ss_pred             chHHHHHHHHHHHHHcCCcEEEeeCCHH---HHHHHHhh-CCeEEECccc--ccC-HHHHHHHHccCCeEEEeCCCCCCH
Confidence            4555555554   458888888666544   45556666 8999998774  333 568888888888877776666333


Q ss_pred             HHHHH---hh-c-ccceEEEEeeecCC---C-CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC----CC---cccHHH
Q 029661           88 SAIEC---VL-D-VVDLVLIMSVNPGF---G-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG----VG---PKNAYK  151 (190)
Q Consensus        88 ~~~~~---~~-~-~~d~i~~m~v~pG~---~-gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG----I~---~e~~~~  151 (190)
                      +.+..   ++ . .-+.|.++  +-|+   . +..-..--+.-|..+|+..     +++|.+|..    -+   +.....
T Consensus       222 ee~~~A~e~i~~~Gn~~viL~--erG~rtf~s~y~~~~~dl~ai~~lk~~~-----~lPVi~DpsH~~G~sd~~~~~a~A  294 (352)
T PRK13396        222 DEWLMAAEYILAAGNPNVILC--ERGIRTFDRQYTRNTLDLSVIPVLRSLT-----HLPIMIDPSHGTGKSEYVPSMAMA  294 (352)
T ss_pred             HHHHHHHHHHHHcCCCeEEEE--ecCCccCcCCCCCCCcCHHHHHHHHHhh-----CCCEEECCcccCCcHHHHHHHHHH
Confidence            32222   22 1 12333332  4443   1 1111122255555665543     467877753    33   234445


Q ss_pred             HHHcCCCEEEEccccc
Q 029661          152 VIEAGANALVAGSAVF  167 (190)
Q Consensus       152 ~~~aGad~~VvGsaI~  167 (190)
                      .+.+|||++++=.=..
T Consensus       295 Ava~GAdGliIE~H~~  310 (352)
T PRK13396        295 AIAAGTDSLMIEVHPN  310 (352)
T ss_pred             HHhhCCCeEEEEecCC
Confidence            6789999988876444

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=92.27  E-value=1.9  Score=37.00  Aligned_cols=117  Identities=20%  Similarity=0.204  Sum_probs=67.6

Q ss_pred             cChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE--EcCCCCH-----------HHHHHhhcc-cce
Q 029661           34 VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV--LNPATSL-----------SAIECVLDV-VDL   99 (190)
Q Consensus        34 ~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~--i~p~t~~-----------~~~~~~~~~-~d~   99 (190)
                      .||...++.+.+.|+|.+..|.-.     +..+   .+.+..++++.  +|..|++           ..+++-+.. +|-
T Consensus        91 ~dp~~~i~~a~~~g~dAv~~~~G~-----l~~~---~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdA  162 (348)
T PRK09250         91 FDPENIVKLAIEAGCNAVASTLGV-----LEAV---ARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVA  162 (348)
T ss_pred             cCHHHHHHHHHhcCCCEEEeCHHH-----HHhc---cccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCE
Confidence            477888999999999999999531     2211   33443344443  4443333           112333332 566


Q ss_pred             EEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE--EE-eCCCCccc------------HHHHHHcCCCEEEE
Q 029661          100 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI--EV-DGGVGPKN------------AYKVIEAGANALVA  162 (190)
Q Consensus       100 i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i--~v-dGGI~~e~------------~~~~~~aGad~~Vv  162 (190)
                      |.+ +++||..   ....+++.+.++.....+.|..+-+  .. .+.++.+.            .+...+.|||++=+
T Consensus       163 V~~-tvy~Gs~---~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv  236 (348)
T PRK09250        163 VGA-TIYFGSE---ESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQ  236 (348)
T ss_pred             EEE-EEecCCH---HHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEe
Confidence            654 6778832   3456788888888877776643322  12 33344322            34567889998754

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=92.25  E-value=3.1  Score=33.79  Aligned_cols=144  Identities=20%  Similarity=0.275  Sum_probs=77.9

Q ss_pred             EEEEEeecChH-----HHHHHHHHcCCCEEEEc------ccCCC-cc--------------hHHHHHHHHHHh-CCcEEE
Q 029661           27 LDVHLMIVEPE-----QRVPDFIKAGADIVSVH------CEQSS-TI--------------HLHRTLNQIKDL-GAKAGV   79 (190)
Q Consensus        27 i~~hlmv~dp~-----~~i~~~~~~Gad~v~vh------~e~~~-~~--------------~~~~~i~~i~~~-g~~~g~   79 (190)
                      +..+++.-+|.     ++++.+.++|||++.+-      .-.++ .+              ...+.++.+|+. .+.+.+
T Consensus         2 li~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~l   81 (242)
T cd04724           2 LIPYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVL   81 (242)
T ss_pred             cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEE
Confidence            45678887773     45667888999999996      22111 01              223455566653 344444


Q ss_pred             EE--cCCCC--HHH-HHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHH
Q 029661           80 VL--NPATS--LSA-IECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI  153 (190)
Q Consensus        80 ~i--~p~t~--~~~-~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~  153 (190)
                      ..  ||-..  ++. ++.+.+ .+|.+++    |.-        ..+.+.++.+.+.+++.+.-+.+...-+.+.++.+.
T Consensus        82 m~y~n~~~~~G~~~fi~~~~~aG~~giii----pDl--------~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~  149 (242)
T cd04724          82 MGYYNPILQYGLERFLRDAKEAGVDGLII----PDL--------PPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIA  149 (242)
T ss_pred             EEecCHHHHhCHHHHHHHHHHCCCcEEEE----CCC--------CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence            32  32111  122 333322 2565544    211        124556666667676666656677777778888887


Q ss_pred             HcCCCE-EEEc-ccccCC-----CCHHHHHHHHHHh
Q 029661          154 EAGANA-LVAG-SAVFGA-----KDYAEAIKGIKTS  182 (190)
Q Consensus       154 ~aGad~-~VvG-saI~~~-----~dp~~~~~~l~~~  182 (190)
                      +...+. .+++ ...|..     ++..+.++++|+.
T Consensus       150 ~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~  185 (242)
T cd04724         150 ELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY  185 (242)
T ss_pred             hhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence            744443 3334 345532     3345666777764

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=92.20  E-value=5.5  Score=32.45  Aligned_cols=119  Identities=19%  Similarity=0.317  Sum_probs=73.9

Q ss_pred             HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEE-EEcCC--------------------C---CHHHHHHhh
Q 029661           39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPA--------------------T---SLSAIECVL   94 (190)
Q Consensus        39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~-~i~p~--------------------t---~~~~~~~~~   94 (190)
                      -++.+..+|||=|++---+  ..+++-+-+.+++.|..+.+ +|...                    |   .++|.++.-
T Consensus        88 D~~~ll~aGADKVSINsaA--v~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e  165 (256)
T COG0107          88 DARKLLRAGADKVSINSAA--VKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVE  165 (256)
T ss_pred             HHHHHHHcCCCeeeeChhH--hcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHH
Confidence            4567888999999998664  56677666777778877654 33211                    1   235555554


Q ss_pred             cc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-CCEEEEcccccC
Q 029661           95 DV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVFG  168 (190)
Q Consensus        95 ~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-ad~~VvGsaI~~  168 (190)
                      +. +--|++=+++-....+-|   -++.++.+++..     ++|+-+.||.. ++++.++...| ||..... +||.
T Consensus       166 ~~GAGEIlLtsmD~DGtk~Gy---Dl~l~~~v~~~v-----~iPvIASGGaG~~ehf~eaf~~~~adAaLAA-siFH  233 (256)
T COG0107         166 ELGAGEILLTSMDRDGTKAGY---DLELTRAVREAV-----NIPVIASGGAGKPEHFVEAFTEGKADAALAA-SIFH  233 (256)
T ss_pred             HcCCceEEEeeecccccccCc---CHHHHHHHHHhC-----CCCEEecCCCCcHHHHHHHHHhcCccHHHhh-hhhh
Confidence            33 555665455421111223   344455555543     47888888888 79999888777 8876544 4554

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=92.09  E-value=2.5  Score=36.57  Aligned_cols=60  Identities=23%  Similarity=0.239  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEc----ccccCCCCHHHHHHHHHHh
Q 029661          118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG----SAVFGAKDYAEAIKGIKTS  182 (190)
Q Consensus       118 ~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvG----saI~~~~dp~~~~~~l~~~  182 (190)
                      +++.|+++|+..+     .++.+-|=++.+++..+.++|+|+++++    +.+-....+-+++.++++.
T Consensus       224 ~w~~i~~ir~~~~-----~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~  287 (361)
T cd04736         224 NWQDLRWLRDLWP-----HKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAA  287 (361)
T ss_pred             CHHHHHHHHHhCC-----CCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHH
Confidence            4678888888753     4677777677999999999999999864    3333333445555555543

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=92.08  E-value=3.6  Score=35.61  Aligned_cols=142  Identities=11%  Similarity=0.087  Sum_probs=81.1

Q ss_pred             CCCHHHHHHhccC---CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC
Q 029661           10 TIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS   86 (190)
Q Consensus        10 ~~G~~~v~~i~~~---~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~   86 (190)
                      ++|.+..+.|+++   .++++....+-..   .++.+.+. +|++-+....  ..+ ..+++++-+.|+.+.+.-.....
T Consensus       165 g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~---~~~~l~~~-vd~lkI~s~~--~~n-~~LL~~~a~~gkPVilk~G~~~t  237 (360)
T PRK12595        165 GLGVEGLKILKQVADEYGLAVISEIVNPA---DVEVALDY-VDVIQIGARN--MQN-FELLKAAGRVNKPVLLKRGLSAT  237 (360)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeeCCHH---HHHHHHHh-CCeEEECccc--ccC-HHHHHHHHccCCcEEEeCCCCCC
Confidence            3466666666553   6777777444332   45666777 8999988764  333 46888888899888887776433


Q ss_pred             HHHHHH---hhcc--c-ceEEEE-eee--cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc-------cHH
Q 029661           87 LSAIEC---VLDV--V-DLVLIM-SVN--PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-------NAY  150 (190)
Q Consensus        87 ~~~~~~---~~~~--~-d~i~~m-~v~--pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e-------~~~  150 (190)
                      ++.+..   ++..  - +++++- ++.  |.++   ...--+.-|..+|+..     ++++.+|-.=+..       ...
T Consensus       238 ~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~---~~~ldl~~i~~lk~~~-----~~PV~~d~~Hs~G~r~~~~~~a~  309 (360)
T PRK12595        238 IEEFIYAAEYIMSQGNGQIILCERGIRTYEKAT---RNTLDISAVPILKQET-----HLPVMVDVTHSTGRRDLLLPTAK  309 (360)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCccCCCCCCC---CCCcCHHHHHHHHHHh-----CCCEEEeCCCCCcchhhHHHHHH
Confidence            333222   2221  2 344432 332  2111   1111355555666543     4678886332221       334


Q ss_pred             HHHHcCCCEEEEcccc
Q 029661          151 KVIEAGANALVAGSAV  166 (190)
Q Consensus       151 ~~~~aGad~~VvGsaI  166 (190)
                      ..+..|||++++-.=.
T Consensus       310 aAva~GAdg~~iE~H~  325 (360)
T PRK12595        310 AALAIGADGVMAEVHP  325 (360)
T ss_pred             HHHHcCCCeEEEEecC
Confidence            4688999998887655

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=92.06  E-value=4.8  Score=32.38  Aligned_cols=124  Identities=7%  Similarity=0.072  Sum_probs=71.9

Q ss_pred             cEEEEEeecChHH---HHHHHHHcCCCEEEEcccCCC---c-chHHHHHHHHHHhCCcEEE--EEcCCCCHHHHHHhhc-
Q 029661           26 PLDVHLMIVEPEQ---RVPDFIKAGADIVSVHCEQSS---T-IHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD-   95 (190)
Q Consensus        26 ~i~~hlmv~dp~~---~i~~~~~~Gad~v~vh~e~~~---~-~~~~~~i~~i~~~g~~~g~--~i~p~t~~~~~~~~~~-   95 (190)
                      .+..-+|..|+..   .++.+.+.|+|++|+=...+.   . ..-.+.++++|+++.+.-+  =+.+++|...++.+.+ 
T Consensus         8 ~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~   87 (228)
T PTZ00170          8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKA   87 (228)
T ss_pred             EEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHc
Confidence            4566677888754   566788889999998544321   1 1123688999988633333  3557788877777665 


Q ss_pred             ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC-CCEE
Q 029661           96 VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANAL  160 (190)
Q Consensus        96 ~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG-ad~~  160 (190)
                      .+|++.+   |.-... .....+   ++.+|+    .|....+++-..-..+.+..+.+.+ .|.+
T Consensus        88 Gad~itv---H~ea~~-~~~~~~---l~~ik~----~G~~~gval~p~t~~e~l~~~l~~~~vD~V  142 (228)
T PTZ00170         88 GASQFTF---HIEATE-DDPKAV---ARKIRE----AGMKVGVAIKPKTPVEVLFPLIDTDLVDMV  142 (228)
T ss_pred             CCCEEEE---eccCCc-hHHHHH---HHHHHH----CCCeEEEEECCCCCHHHHHHHHccchhhhH
Confidence            3888865   422111 101122   233333    3444556666666667777765333 6655

>PRK02227 hypothetical protein; Provisional

Probab=92.04  E-value=5.7  Score=32.35  Aligned_cols=164  Identities=18%  Similarity=0.185  Sum_probs=99.4

Q ss_pred             CHHHHHHhccCC--CCcEEEEEeec----ChHHH---HHHHHHcCCCEEEEcccCCCcchHHHH-------HHHHHHh--
Q 029661           12 GPLVVDALRPVT--DLPLDVHLMIV----EPEQR---VPDFIKAGADIVSVHCEQSSTIHLHRT-------LNQIKDL--   73 (190)
Q Consensus        12 G~~~v~~i~~~~--~~~i~~hlmv~----dp~~~---i~~~~~~Gad~v~vh~e~~~~~~~~~~-------i~~i~~~--   73 (190)
                      .|.+|++|+...  .+|+-+  -+-    +|...   +.....+|+|+|=+....  ..+..+.       ++..+.+  
T Consensus        38 ~p~vir~Iv~~~~~~~pvSA--tiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~--~~~~~~~~~~~~~v~~a~~~~~~  113 (238)
T PRK02227         38 FPWVIREIVAAVPGRKPVSA--TIGDVPYKPGTISLAALGAAATGADYVKVGLYG--GKTAEEAVEVMKAVVRAVKDLDP  113 (238)
T ss_pred             CHHHHHHHHHHhCCCCCcee--eccCCCCCchHHHHHHHHHHhhCCCEEEEcCCC--CCcHHHHHHHHHHHHHhhhhcCC
Confidence            467888888752  267776  333    34433   334577899999997542  2223333       3333332  


Q ss_pred             CCcEEEEEc-CCC-----CHHHHHHhhc--ccceEEEEeeecCCCCc-ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC
Q 029661           74 GAKAGVVLN-PAT-----SLSAIECVLD--VVDLVLIMSVNPGFGGQ-SFIESQVKKISDLRRMCLEKGVNPWIEVDGGV  144 (190)
Q Consensus        74 g~~~g~~i~-p~t-----~~~~~~~~~~--~~d~i~~m~v~pG~~gq-~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI  144 (190)
                      +.++.-+.- -..     +...+-+++.  ..|.+++=|  -+.+|. .|.....+.+++..+...++|  ...+..|.+
T Consensus       114 ~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDT--a~Kdg~~Lfd~l~~~~L~~Fv~~ar~~G--l~~gLAGSL  189 (238)
T PRK02227        114 GKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDT--AIKDGKSLFDHMDEEELAEFVAEARSHG--LMSALAGSL  189 (238)
T ss_pred             CCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEec--ccCCCcchHhhCCHHHHHHHHHHHHHcc--cHhHhcccC
Confidence            444443332 222     3334455553  356665522  244444 455555777777777766654  456789999


Q ss_pred             CcccHHHHHHcCCCEEEEcccccCCC------CHHHHHHHHHHhhc
Q 029661          145 GPKNAYKVIEAGANALVAGSAVFGAK------DYAEAIKGIKTSKR  184 (190)
Q Consensus       145 ~~e~~~~~~~aGad~~VvGsaI~~~~------dp~~~~~~l~~~~~  184 (190)
                      +.++++.+...++|++=+=+++....      || +.+.+|++.+.
T Consensus       190 ~~~dip~L~~l~pD~lGfRgavC~g~dR~~~id~-~~V~~~~~~l~  234 (238)
T PRK02227        190 KFEDIPALKRLGPDILGVRGAVCGGGDRTGRIDP-ELVAELREALR  234 (238)
T ss_pred             chhhHHHHHhcCCCEEEechhccCCCCcccccCH-HHHHHHHHHhh
Confidence            99999999999999997778888544      33 45566666554

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=92.01  E-value=1.8  Score=37.29  Aligned_cols=96  Identities=15%  Similarity=0.157  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhC-Cc-EEEEEcCCCC----HHHHHHhhc--ccceEEEEeeecCCC-Ccccc----hhhHHHHHHHHHHH
Q 029661           63 LHRTLNQIKDLG-AK-AGVVLNPATS----LSAIECVLD--VVDLVLIMSVNPGFG-GQSFI----ESQVKKISDLRRMC  129 (190)
Q Consensus        63 ~~~~i~~i~~~g-~~-~g~~i~p~t~----~~~~~~~~~--~~d~i~~m~v~pG~~-gq~~~----~~~~~ki~~~~~~~  129 (190)
                      ..+.++.+|+.. -. +..-++..++    .+.+.+.++  .+|.+-+ .+.|+.. .|+-.    ...++.|+++++..
T Consensus       107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l-~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~  185 (352)
T PRK05437        107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQI-HLNPLQELVQPEGDRDFRGWLDNIAEIVSAL  185 (352)
T ss_pred             hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEE-eCccchhhcCCCCcccHHHHHHHHHHHHHhh
Confidence            556777778764 23 3333433333    455555544  3566654 2233211 11111    22345666666654


Q ss_pred             hhcCCCCeEEE---eCCCCcccHHHHHHcCCCEEEEcc
Q 029661          130 LEKGVNPWIEV---DGGVGPKNAYKVIEAGANALVAGS  164 (190)
Q Consensus       130 ~~~~~~~~i~v---dGGI~~e~~~~~~~aGad~~VvGs  164 (190)
                           +++|.+   .+|.+.+.++.+.++|+|+++++.
T Consensus       186 -----~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg  218 (352)
T PRK05437        186 -----PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG  218 (352)
T ss_pred             -----CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence                 356664   677999999999999999999854

>PRK12655 fructose-6-phosphate aldolase; Reviewed

Probab=91.98  E-value=5.5  Score=32.03  Aligned_cols=159  Identities=13%  Similarity=0.073  Sum_probs=93.4

Q ss_pred             HHHHHhccC-C-CCcEEEEEeecChHHHHHH---HHHcCCCEEE-EcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661           14 LVVDALRPV-T-DLPLDVHLMIVEPEQRVPD---FIKAGADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL   87 (190)
Q Consensus        14 ~~v~~i~~~-~-~~~i~~hlmv~dp~~~i~~---~~~~Gad~v~-vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~   87 (190)
                      +.+++|++. . .-++.+...-.|.+..+++   +.+.+-+.+. ++.    ...=-+.++.+++.|+++-+...- +..
T Consensus        41 ~~~~~i~~~~~~~~~v~~qv~~~d~e~mi~eA~~l~~~~~nv~IKIP~----T~~Gl~Ai~~L~~~GI~vn~T~vf-s~~  115 (220)
T PRK12655         41 EVLPRLQKAIGGEGILFAQTMSRDAQGMVEEAKRLRNAIPGIVVKIPV----TAEGLAAIKKLKKEGIPTLGTAVY-SAA  115 (220)
T ss_pred             HHHHHHHHHhCCCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEeCC----CHHHHHHHHHHHHCCCceeEeEec-CHH
Confidence            455666664 2 2356666666777766554   3444544333 332    122346777778888888664431 222


Q ss_pred             HHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccccc
Q 029661           88 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus        88 ~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~  167 (190)
                      +.+......++||.   ..-|--. .......+.++++++++..++++..|-+..=-|++++-++..+|+|.+-+.-.++
T Consensus       116 Qa~~Aa~aGa~yIs---pyvgR~~-~~g~dg~~~i~~~~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip~~vl  191 (220)
T PRK12655        116 QGLLAALAGAKYVA---PYVNRVD-AQGGDGIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAGCQSITLPLDVA  191 (220)
T ss_pred             HHHHHHHcCCeEEE---eecchHh-HcCCCHHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECCHHHH
Confidence            33333334567763   1222110 0112346677888888877777787755555558888888899999999997766


Q ss_pred             C----CCCHHHHHHHHHH
Q 029661          168 G----AKDYAEAIKGIKT  181 (190)
Q Consensus       168 ~----~~dp~~~~~~l~~  181 (190)
                      +    .+-..+.++.+.+
T Consensus       192 ~~l~~~p~t~~~~~~F~~  209 (220)
T PRK12655        192 QQMLNTPAVESAIEKFEQ  209 (220)
T ss_pred             HHHHcCCChHHHHHHHHH
Confidence            4    4555666666643

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides

Probab=91.88  E-value=2.2  Score=35.75  Aligned_cols=123  Identities=12%  Similarity=0.029  Sum_probs=72.8

Q ss_pred             cChHHH---HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh-C-CcEEEEEcCCCCHHHHHHhhcccceEEEEeeecC
Q 029661           34 VEPEQR---VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-G-AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG  108 (190)
Q Consensus        34 ~dp~~~---i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~-g-~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG  108 (190)
                      .+|+.+   ++.+.+.|.+.+=++.-. ..+...+.++.+|+. | .++.+..|...+.+...+++...+-.-+.-+   
T Consensus       133 ~~~~~~~~~~~~~~~~Gf~~iKik~g~-~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~i---  208 (316)
T cd03319         133 DTPEAMAAAAKKAAKRGFPLLKIKLGG-DLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELI---  208 (316)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeCC-ChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEE---
Confidence            567654   445667899999988642 123345677777764 4 5566667766665555555433211000011   


Q ss_pred             CCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH-cCCCEEEEccccc
Q 029661          109 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE-AGANALVAGSAVF  167 (190)
Q Consensus       109 ~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~-aGad~~VvGsaI~  167 (190)
                        .|++.+...+.++++++.     .+++|+.|+.+. .+.+..+.+ .++|++..-..-+
T Consensus       209 --EeP~~~~d~~~~~~L~~~-----~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~  262 (316)
T cd03319         209 --EQPVPAGDDDGLAYLRDK-----SPLPIMADESCFSAADAARLAGGGAYDGINIKLMKT  262 (316)
T ss_pred             --ECCCCCCCHHHHHHHHhc-----CCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecccc
Confidence              344444455556666553     347898998886 677777766 5688887764444

The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=91.82  E-value=1.4  Score=44.44  Aligned_cols=127  Identities=18%  Similarity=0.255  Sum_probs=80.9

Q ss_pred             HHHHHHHc--CCCEEEEc--ccCCCcchHHHHHHHHHHh--CCcEEEEEcCCCCHHHHHHhh--cccceEEEEeeecCCC
Q 029661           39 RVPDFIKA--GADIVSVH--CEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVL--DVVDLVLIMSVNPGFG  110 (190)
Q Consensus        39 ~i~~~~~~--Gad~v~vh--~e~~~~~~~~~~i~~i~~~--g~~~g~~i~p~t~~~~~~~~~--~~~d~i~~m~v~pG~~  110 (190)
                      ++..+...  |.+.++-.  .+..+.+++...+..+|+.  +.++++=+...+-+..+..-+  ..+|+|++=+-+-|++
T Consensus       955 ~IA~~R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTG 1034 (1485)
T PRK11750        955 LIARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTG 1034 (1485)
T ss_pred             HHHHHcCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcc
Confidence            45555333  67776653  2222356788888888886  457787665544454444322  2589998866665554


Q ss_pred             Ccccc--hhh---H-HHHHHHHHHHhhcC--CCCeEEEeCCCC-cccHHHHHHcCCCEEEEccc
Q 029661          111 GQSFI--ESQ---V-KKISDLRRMCLEKG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA  165 (190)
Q Consensus       111 gq~~~--~~~---~-~ki~~~~~~~~~~~--~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsa  165 (190)
                      ..+..  ..+   + --+.+.++.+..++  -.+.+.+|||+. ..++..++..|||.+-.|++
T Consensus      1035 Aap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~ 1098 (1485)
T PRK11750       1035 ASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTG 1098 (1485)
T ss_pred             cccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchH
Confidence            32211  000   1 12566666665554  347899999999 67888889999999999975

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=91.81  E-value=3.4  Score=32.49  Aligned_cols=138  Identities=20%  Similarity=0.211  Sum_probs=75.6

Q ss_pred             ChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEc-CC--CC----HHHHHHhhc-ccceEEEEeee
Q 029661           35 EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN-PA--TS----LSAIECVLD-VVDLVLIMSVN  106 (190)
Q Consensus        35 dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~-p~--t~----~~~~~~~~~-~~d~i~~m~v~  106 (190)
                      ++.++++.+.+.|++.+.++...     +....+.+++.+.++..+++ |.  .+    ....++.+. .+|-|-+ .++
T Consensus        18 ~i~~~~~~a~~~~~~av~v~p~~-----v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevdv-v~~   91 (203)
T cd00959          18 DIRKLCDEAKEYGFAAVCVNPCF-----VPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIADGADEIDM-VIN   91 (203)
T ss_pred             HHHHHHHHHHHcCCCEEEEcHHH-----HHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEEE-eec
Confidence            45678888999999999999653     33334444445566665554 11  11    122333333 2555533 233


Q ss_pred             cCC--CCcccchhhHHHHHHHHHHHhhcCCCCe-EEEeCCCCccc----HHHHHHcCCCEEEEccccc-CCCCHHHHHHH
Q 029661          107 PGF--GGQSFIESQVKKISDLRRMCLEKGVNPW-IEVDGGVGPKN----AYKVIEAGANALVAGSAVF-GAKDYAEAIKG  178 (190)
Q Consensus       107 pG~--~gq~~~~~~~~ki~~~~~~~~~~~~~~~-i~vdGGI~~e~----~~~~~~aGad~~VvGsaI~-~~~dp~~~~~~  178 (190)
                      .|.  +|  ......+.|.++++...  +..+. |.-.|..+.+.    .+.+.++|||++=.++.-. ....+ +.++.
T Consensus        92 ~g~~~~~--~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~-~~v~~  166 (203)
T cd00959          92 IGALKSG--DYEAVYEEIAAVVEACG--GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATV-EDVKL  166 (203)
T ss_pred             HHHHhCC--CHHHHHHHHHHHHHhcC--CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCH-HHHHH
Confidence            442  22  23456777777777654  22222 33456666554    4456899999998886554 22333 33344


Q ss_pred             HHHhh
Q 029661          179 IKTSK  183 (190)
Q Consensus       179 l~~~~  183 (190)
                      +++.+
T Consensus       167 ~~~~~  171 (203)
T cd00959         167 MKEAV  171 (203)
T ss_pred             HHHHh
Confidence            44443

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=91.76  E-value=6.3  Score=32.19  Aligned_cols=125  Identities=19%  Similarity=0.113  Sum_probs=63.4

Q ss_pred             HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE-EcCCCCHHHHHHhhc-ccceEEEE-eeecCCCCc-
Q 029661           37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNPATSLSAIECVLD-VVDLVLIM-SVNPGFGGQ-  112 (190)
Q Consensus        37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~-i~p~t~~~~~~~~~~-~~d~i~~m-~v~pG~~gq-  112 (190)
                      ..+++.+.++|.+.|=+..-+ ..++..+.++.+++.+...-+. +.. ...+.++...+ .+|.|-+. ++.+-.... 
T Consensus        23 ~~i~~~L~~~Gv~~iE~g~p~-~~~~~~e~~~~l~~~~~~~~~~~~~r-~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~  100 (259)
T cd07939          23 LAIARALDEAGVDEIEVGIPA-MGEEEREAIRAIVALGLPARLIVWCR-AVKEDIEAALRCGVTAVHISIPVSDIHLAHK  100 (259)
T ss_pred             HHHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHHhcCCCCEEEEecc-CCHHHHHHHHhCCcCEEEEEEecCHHHHHHH
Confidence            346777888888888773211 0223345677777654333332 221 22344444443 36766442 222111000 


Q ss_pred             --ccchhhHHHHHHHHHHHhhcCCCCeEE--EeCCCCcc----cHHHHHHcCCCEEEEc
Q 029661          113 --SFIESQVKKISDLRRMCLEKGVNPWIE--VDGGVGPK----NAYKVIEAGANALVAG  163 (190)
Q Consensus       113 --~~~~~~~~ki~~~~~~~~~~~~~~~i~--vdGGI~~e----~~~~~~~aGad~~VvG  163 (190)
                        .-.++.++++.+.-++..+.|..+.+.  -.+..+++    .++.+.++|+|.+.+.
T Consensus       101 ~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~  159 (259)
T cd07939         101 LGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFA  159 (259)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeC
Confidence              113456677777777766666543322  22223344    3445667899988765

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>TIGR02351 thiH thiazole biosynthesis protein ThiH

Probab=91.75  E-value=2.6  Score=36.39  Aligned_cols=124  Identities=15%  Similarity=0.129  Sum_probs=63.9

Q ss_pred             HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc---------------chHHHHHHHHHHhCCc-
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST---------------IHLHRTLNQIKDLGAK-   76 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~---------------~~~~~~i~~i~~~g~~-   76 (190)
                      +.++.|++. +.+.+.+..+  +. +-++.+.++|++.+++-.|+...               +..-+.++.+++.|++ 
T Consensus       141 eii~~Ik~~~p~i~Iei~~l--t~-e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~  217 (366)
T TIGR02351       141 EAIKLAREYFSSLAIEVQPL--NE-EEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRK  217 (366)
T ss_pred             HHHHHHHHhCCccccccccC--CH-HHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCe
Confidence            455666653 3333433222  22 24578999999999998776311               1123467788888876 


Q ss_pred             E--EEEEcCC-CCHHHHHH-----hhcc--------cceEEEEeeecC-CCCcc-cc-hhhHHHHHHHHHHHhhcCCCCe
Q 029661           77 A--GVVLNPA-TSLSAIEC-----VLDV--------VDLVLIMSVNPG-FGGQS-FI-ESQVKKISDLRRMCLEKGVNPW  137 (190)
Q Consensus        77 ~--g~~i~p~-t~~~~~~~-----~~~~--------~d~i~~m~v~pG-~~gq~-~~-~~~~~ki~~~~~~~~~~~~~~~  137 (190)
                      +  |+.+... +..+.+.-     ++..        +-...+|.. +| +..+. +. .+.++.|..+|-+.+.    ..
T Consensus       218 v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~-~g~~~~~~~l~~~~~~~~i~~~R~~~P~----~~  292 (366)
T TIGR02351       218 IGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPC-TNGLKPKVIVTDRELVQIICAYRLFDPF----VE  292 (366)
T ss_pred             eceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccccccccccC-CCCCCCCCcCCHHHHHHHHHHHHHhCcc----cc
Confidence            4  4444433 22332220     1111        122234433 23 11111 22 3445666666766654    46


Q ss_pred             EEEeCCCC
Q 029661          138 IEVDGGVG  145 (190)
Q Consensus       138 i~vdGGI~  145 (190)
                      |-+.||=.
T Consensus       293 i~~s~g~~  300 (366)
T TIGR02351       293 ISLSTRES  300 (366)
T ss_pred             cEEecCCC
Confidence            77888843

Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.

>smart00812 Alpha_L_fucos Alpha-L-fucosidase

Probab=91.73  E-value=2.8  Score=36.57  Aligned_cols=121  Identities=17%  Similarity=0.154  Sum_probs=67.7

Q ss_pred             cChHHHHHHHHHcCCCEEEE---ccc----------------CCC-cchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHh
Q 029661           34 VEPEQRVPDFIKAGADIVSV---HCE----------------QSS-TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV   93 (190)
Q Consensus        34 ~dp~~~i~~~~~~Gad~v~v---h~e----------------~~~-~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~   93 (190)
                      -||.++++.++++|+.++++   |-+                +++ .+=+.++.+++|++|+++|+-.++   .++-.+ 
T Consensus        81 fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~DW~~p-  156 (384)
T smart00812       81 FDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FDWFNP-  156 (384)
T ss_pred             CCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---HHhCCC-
Confidence            57899999999999999988   211                000 123688999999999999997664   332211 


Q ss_pred             hcccceEEEE--eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--c------ccHHHHHHcCCCE---E
Q 029661           94 LDVVDLVLIM--SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--P------KNAYKVIEAGANA---L  160 (190)
Q Consensus        94 ~~~~d~i~~m--~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~------e~~~~~~~aGad~---~  160 (190)
                          ++-...  ...+. .-..+....-+-..++++++.+-+. -.+.-||+..  .      +-+..+.+...+.   +
T Consensus       157 ----~y~~~~~~~~~~~-~~~~~~~y~~~~~~Ql~ELit~Ygp-d~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~~~~vv  230 (384)
T smart00812      157 ----LYAGPTSSDEDPD-NWPRFQEFVDDWLPQLRELVTRYKP-DLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVKDTVV  230 (384)
T ss_pred             ----ccccccccccccc-cchhHHHHHHHHHHHHHHHHhcCCC-ceEEEeCCCCCccchhcHHHHHHHHHHhCCCCceEE
Confidence                110000  00000 0111122221113566777765555 5688999863  1      1223456666765   5


Q ss_pred             EEcc
Q 029661          161 VAGS  164 (190)
Q Consensus       161 VvGs  164 (190)
                      |-.+
T Consensus       231 vn~R  234 (384)
T smart00812      231 VNDR  234 (384)
T ss_pred             EEcc
Confidence            5444

O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=91.72  E-value=2.6  Score=35.57  Aligned_cols=93  Identities=18%  Similarity=0.176  Sum_probs=58.6

Q ss_pred             CCCHHHHHHhccCCCCcEEEEEee------cChHHHHHHHHHcCCCEEEEcccCCC----cchHHHHHHHHHHhCCcEEE
Q 029661           10 TIGPLVVDALRPVTDLPLDVHLMI------VEPEQRVPDFIKAGADIVSVHCEQSS----TIHLHRTLNQIKDLGAKAGV   79 (190)
Q Consensus        10 ~~G~~~v~~i~~~~~~~i~~hlmv------~dp~~~i~~~~~~Gad~v~vh~e~~~----~~~~~~~i~~i~~~g~~~g~   79 (190)
                      .+-.++++++|+.+++|+.+.+-.      .+..++++.+.++|+|.+++|.....    .....+.++.+++.=..+.+
T Consensus       117 ~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi  196 (319)
T TIGR00737       117 DLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVI  196 (319)
T ss_pred             HHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEE
Confidence            344567888888778899886532      12346777889999999999965310    01124566677664223333


Q ss_pred             EEcCCCCHHHHHHhhc--ccceEEE
Q 029661           80 VLNPATSLSAIECVLD--VVDLVLI  102 (190)
Q Consensus        80 ~i~p~t~~~~~~~~~~--~~d~i~~  102 (190)
                      +..--++.+.+.++++  .+|.|++
T Consensus       197 ~nGgI~~~~da~~~l~~~gad~Vmi  221 (319)
T TIGR00737       197 GNGDIFSPEDAKAMLETTGCDGVMI  221 (319)
T ss_pred             EeCCCCCHHHHHHHHHhhCCCEEEE
Confidence            4444466677777774  3788765

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=91.70  E-value=2.4  Score=34.05  Aligned_cols=141  Identities=16%  Similarity=0.194  Sum_probs=79.4

Q ss_pred             ChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC---H---------HHHHHhhcc-cceEE
Q 029661           35 EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS---L---------SAIECVLDV-VDLVL  101 (190)
Q Consensus        35 dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~---~---------~~~~~~~~~-~d~i~  101 (190)
                      ++.++++++.+.|++.|++++..     +..+.+.....+.++++.++-...   .         ...++.+.. +|-|-
T Consensus        20 ~~~~~~~~a~~~~~~av~v~p~~-----~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd   94 (236)
T PF01791_consen   20 DIKKLCREAIEYGFDAVCVTPGY-----VKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVD   94 (236)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEGGG-----HHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEE
T ss_pred             hHHHHHHHHHHhCCCEEEECHHH-----HHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHcCCceee
Confidence            56778899999999999999763     444444444445688888874321   1         122233322 44443


Q ss_pred             EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCccc-------------HHHHHHcCCCEEEEcccccC
Q 029661          102 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-------------AYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       102 ~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~-------------~~~~~~aGad~~VvGsaI~~  168 (190)
                      + .++.|..+........+.++++++...+.+  +++.+-+=.+.+.             .+.+.++|||++=..+.=+ 
T Consensus        95 ~-vi~~~~~~~~~~~~~~~~i~~v~~~~~~~g--l~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-  170 (236)
T PF01791_consen   95 V-VINYGALGSGNEDEVIEEIAAVVEECHKYG--LKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-  170 (236)
T ss_dssp             E-EEEHHHHHTTHHHHHHHHHHHHHHHHHTSE--EEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-
T ss_pred             e-eccccccccccHHHHHHHHHHHHHHHhcCC--cEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-
Confidence            2 234433333234566778888888876544  4444444444332             3456889999998876633 


Q ss_pred             CCCHHHHHHHHHHhhc
Q 029661          169 AKDYAEAIKGIKTSKR  184 (190)
Q Consensus       169 ~~dp~~~~~~l~~~~~  184 (190)
                      ...-.+..+.+++..+
T Consensus       171 ~~~t~~~~~~~~~~~~  186 (236)
T PF01791_consen  171 VGATPEDVELMRKAVE  186 (236)
T ss_dssp             SCSHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHH
Confidence            3333344555555443

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=91.67  E-value=5.8  Score=31.67  Aligned_cols=143  Identities=20%  Similarity=0.286  Sum_probs=79.7

Q ss_pred             cCCCCHHHHHHhccC-CCCcEEEEEeecCh-------H--HHHHHHHHcCCCEEEEcccCC-----CcchHHHHHHHHHH
Q 029661            8 NITIGPLVVDALRPV-TDLPLDVHLMIVEP-------E--QRVPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKD   72 (190)
Q Consensus         8 n~~~G~~~v~~i~~~-~~~~i~~hlmv~dp-------~--~~i~~~~~~Gad~v~vh~e~~-----~~~~~~~~i~~i~~   72 (190)
                      .....|..++..++. .+..+-+.--+.=|       .  .-++.+.+.|||-+-+....+     ..+...+.+..+++
T Consensus        34 avcv~p~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~  113 (211)
T TIGR00126        34 AVCVNPSYVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVE  113 (211)
T ss_pred             EEEeCHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHH
Confidence            344567777777653 22222222234434       1  125678999999887753321     12233444444444


Q ss_pred             h--CCcEEEEEc--CCCCHHHHHHhh-----cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC
Q 029661           73 L--GAKAGVVLN--PATSLSAIECVL-----DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG  143 (190)
Q Consensus        73 ~--g~~~g~~i~--p~t~~~~~~~~~-----~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG  143 (190)
                      .  |+.+-+.+.  .-++ +.+....     ..+|+|-.   ..||.+   ...+++.++.+++..+.   .++|-+.||
T Consensus       114 ~~~g~~lKvIlE~~~L~~-~ei~~a~~ia~eaGADfvKT---sTGf~~---~gat~~dv~~m~~~v~~---~v~IKaaGG  183 (211)
T TIGR00126       114 ACAGVLLKVIIETGLLTD-EEIRKACEICIDAGADFVKT---STGFGA---GGATVEDVRLMRNTVGD---TIGVKASGG  183 (211)
T ss_pred             HcCCCeEEEEEecCCCCH-HHHHHHHHHHHHhCCCEEEe---CCCCCC---CCCCHHHHHHHHHHhcc---CCeEEEeCC
Confidence            2  543333222  2122 2222221     13788742   335542   23566777777777653   478999999


Q ss_pred             CC-cccHHHHHHcCCCEE
Q 029661          144 VG-PKNAYKVIEAGANAL  160 (190)
Q Consensus       144 I~-~e~~~~~~~aGad~~  160 (190)
                      |+ .+++..++++|++-+
T Consensus       184 irt~~~a~~~i~aGa~ri  201 (211)
T TIGR00126       184 VRTAEDAIAMIEAGASRI  201 (211)
T ss_pred             CCCHHHHHHHHHHhhHHh
Confidence            99 688999999999865

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=91.61  E-value=1.5  Score=34.72  Aligned_cols=122  Identities=12%  Similarity=0.168  Sum_probs=71.7

Q ss_pred             EEeecCh---HHHHHHHHHcCCCEEEEcccCC---C-cchHHHHHHHHHHhCCcEEEE--EcCCCCHHHHHHhhcc-cce
Q 029661           30 HLMIVEP---EQRVPDFIKAGADIVSVHCEQS---S-TIHLHRTLNQIKDLGAKAGVV--LNPATSLSAIECVLDV-VDL   99 (190)
Q Consensus        30 hlmv~dp---~~~i~~~~~~Gad~v~vh~e~~---~-~~~~~~~i~~i~~~g~~~g~~--i~p~t~~~~~~~~~~~-~d~   99 (190)
                      -++..|+   ++.++.+.++|+|++++=...+   + ..--.+.++.+|+.- +.-+.  +-...|...++++.+. +|+
T Consensus         5 Sil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~-~~~~DvHLMv~~P~~~i~~~~~~g~~~   83 (201)
T PF00834_consen    5 SILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKIT-DLPLDVHLMVENPERYIEEFAEAGADY   83 (201)
T ss_dssp             BGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTS-SSEEEEEEESSSGGGHHHHHHHHT-SE
T ss_pred             hhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcC-CCcEEEEeeeccHHHHHHHHHhcCCCE
Confidence            3455565   4567888999999999943322   1 111246788888873 33333  3355677778887765 788


Q ss_pred             EEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccc
Q 029661          100 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA  165 (190)
Q Consensus       100 i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsa  165 (190)
                      |.+   |+=..     +...+.++.+|+    .|....|++..+-..+.+..+++ -.|.+.+=|-
T Consensus        84 i~~---H~E~~-----~~~~~~i~~ik~----~g~k~GialnP~T~~~~~~~~l~-~vD~VlvMsV  136 (201)
T PF00834_consen   84 ITF---HAEAT-----EDPKETIKYIKE----AGIKAGIALNPETPVEELEPYLD-QVDMVLVMSV  136 (201)
T ss_dssp             EEE---EGGGT-----TTHHHHHHHHHH----TTSEEEEEE-TTS-GGGGTTTGC-CSSEEEEESS
T ss_pred             EEE---cccch-----hCHHHHHHHHHH----hCCCEEEEEECCCCchHHHHHhh-hcCEEEEEEe
Confidence            754   43211     122333444443    45567788888887888888877 4898877653

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=91.60  E-value=2.7  Score=35.08  Aligned_cols=85  Identities=16%  Similarity=0.216  Sum_probs=59.6

Q ss_pred             HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC--CcEEEEEcCCCCHHHH
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAI   90 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~   90 (190)
                      +.++.+|+. +.+++.+  -+.+.+ -...+.++|+|.|-+=-.  +.+++.+.++.+++.|  -++-+..+-+-..+.+
T Consensus       171 ~av~~~r~~~~~~kIeV--Ev~~le-ea~~a~~agaDiI~LDn~--~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni  245 (278)
T PRK08385        171 EAIRRAKEFSVYKVVEV--EVESLE-DALKAAKAGADIIMLDNM--TPEEIREVIEALKREGLRERVKIEVSGGITPENI  245 (278)
T ss_pred             HHHHHHHHhCCCCcEEE--EeCCHH-HHHHHHHcCcCEEEECCC--CHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHH
Confidence            345666654 4455444  555554 445678999998776544  3667888888888876  4567777777788888


Q ss_pred             HHhhcc-cceEEEE
Q 029661           91 ECVLDV-VDLVLIM  103 (190)
Q Consensus        91 ~~~~~~-~d~i~~m  103 (190)
                      ++|+.. +|+|.+-
T Consensus       246 ~~yA~tGvD~Is~g  259 (278)
T PRK08385        246 EEYAKLDVDVISLG  259 (278)
T ss_pred             HHHHHcCCCEEEeC
Confidence            998876 8998653

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=91.58  E-value=1.4  Score=36.90  Aligned_cols=84  Identities=14%  Similarity=0.190  Sum_probs=60.4

Q ss_pred             HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHH
Q 029661           14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC   92 (190)
Q Consensus        14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~   92 (190)
                      ..++.+|+. +..++.+.  +.+.+ -.+.+.++|+|.|-+--.  +.+++.+.++.+++.+.++-+..+-.-..+.+.+
T Consensus       178 ~av~~~r~~~~~~kIeVE--v~tle-qa~ea~~agaDiI~LDn~--~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~  252 (284)
T PRK06096        178 GAINQLRRHAPEKKIVVE--ADTPK-EAIAALRAQPDVLQLDKF--SPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKN  252 (284)
T ss_pred             HHHHHHHHhCCCCCEEEE--CCCHH-HHHHHHHcCCCEEEECCC--CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHH
Confidence            467777765 45556663  33433 456678999999998544  3567888888777656677888888888888888


Q ss_pred             hhcc-cceEEE
Q 029661           93 VLDV-VDLVLI  102 (190)
Q Consensus        93 ~~~~-~d~i~~  102 (190)
                      |... +|+|..
T Consensus       253 yA~tGvD~Is~  263 (284)
T PRK06096        253 YADCGIRLFIT  263 (284)
T ss_pred             HHhcCCCEEEE
Confidence            8875 999854

>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm)

Probab=91.53  E-value=4.3  Score=29.87  Aligned_cols=97  Identities=23%  Similarity=0.319  Sum_probs=52.3

Q ss_pred             HHHHHhCCcEEEEEcCCCCHHHHHHh-h-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCC-CCeEEEeCCC
Q 029661           68 NQIKDLGAKAGVVLNPATSLSAIECV-L-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDGGV  144 (190)
Q Consensus        68 ~~i~~~g~~~g~~i~p~t~~~~~~~~-~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~-~~~i~vdGGI  144 (190)
                      ..++.+|.++. .+-...|.+.+.+- . ..+|.|.+-+.. |.        +...++++.+++.+.+. ++++.+.|++
T Consensus        21 ~~L~~~GfeVi-dLG~~v~~e~~v~aa~~~~adiVglS~L~-t~--------~~~~~~~~~~~l~~~gl~~v~vivGG~~   90 (128)
T cd02072          21 HAFTEAGFNVV-NLGVLSPQEEFIDAAIETDADAILVSSLY-GH--------GEIDCKGLREKCDEAGLKDILLYVGGNL   90 (128)
T ss_pred             HHHHHCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEeccc-cC--------CHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence            34555676652 33344454443332 2 247777653332 21        22333444444545554 6788888885


Q ss_pred             --CcccH----HHHHHcCCCEEEEcccccCC-CCHHHHHHHHH
Q 029661          145 --GPKNA----YKVIEAGANALVAGSAVFGA-KDYAEAIKGIK  180 (190)
Q Consensus       145 --~~e~~----~~~~~aGad~~VvGsaI~~~-~dp~~~~~~l~  180 (190)
                        .++..    .++.++|.|.      +|.. .++.+.+..|+
T Consensus        91 ~i~~~d~~~~~~~L~~~Gv~~------vf~pgt~~~~i~~~l~  127 (128)
T cd02072          91 VVGKQDFEDVEKRFKEMGFDR------VFAPGTPPEEAIADLK  127 (128)
T ss_pred             CCChhhhHHHHHHHHHcCCCE------EECcCCCHHHHHHHHh
Confidence              34444    5699999873      4433 46666666664

Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=91.51  E-value=8.5  Score=33.22  Aligned_cols=144  Identities=15%  Similarity=0.113  Sum_probs=77.1

Q ss_pred             HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEE-EeeecCCCCcc-
Q 029661           37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLI-MSVNPGFGGQS-  113 (190)
Q Consensus        37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~-m~v~pG~~gq~-  113 (190)
                      ..+++.+.++|++.|-+..-. ..+...+.++.+.+.+...-+...-....+.++..++ .+|.|-+ .++.+-..-.+ 
T Consensus        25 ~~ia~~L~~~Gv~~IEvG~p~-~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~  103 (363)
T TIGR02090        25 VEIARKLDELGVDVIEAGFPI-ASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKL  103 (363)
T ss_pred             HHHHHHHHHcCCCEEEEeCCC-CChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh
Confidence            346777888999988875332 1334556777777766655443221223344555443 3666543 22221110001 


Q ss_pred             --cchhhHHHHHHHHHHHhhcCCCCeEEE-eCCCC-cc----cHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661          114 --FIESQVKKISDLRRMCLEKGVNPWIEV-DGGVG-PK----NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS  182 (190)
Q Consensus       114 --~~~~~~~ki~~~~~~~~~~~~~~~i~v-dGGI~-~e----~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~  182 (190)
                        -.++.++++.+.-++..+.+..+.+.. |.+-. ++    -++.+.++|+|.+.+.-.. ..-.|.+..+.++..
T Consensus       104 ~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~-G~~~P~~v~~li~~l  179 (363)
T TIGR02090       104 KKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTV-GVLTPQKMEELIKKL  179 (363)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-CccCHHHHHHHHHHH
Confidence              134556666666666666665555443 44433 34    3445678899988776332 344666555544443

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins

Probab=91.47  E-value=3.2  Score=33.52  Aligned_cols=153  Identities=22%  Similarity=0.231  Sum_probs=79.4

Q ss_pred             CCCHHHHHHhccC-CCC--cEEEEEeecCh-HHHHHHHHH-cCCCEEEEcccCCCcchHHHHHHHHHHh--CCcEEE--E
Q 029661           10 TIGPLVVDALRPV-TDL--PLDVHLMIVEP-EQRVPDFIK-AGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGV--V   80 (190)
Q Consensus        10 ~~G~~~v~~i~~~-~~~--~i~~hlmv~dp-~~~i~~~~~-~Gad~v~vh~e~~~~~~~~~~i~~i~~~--g~~~g~--~   80 (190)
                      .||-.-+.++... ...  .+.-|| +-+. .+-++.+.. --+++|  |.-. +.+.+.++-+++.+.  |..+.+  -
T Consensus        48 ~fGENrvQe~~~K~~~l~~~i~wHf-IG~LQ~NK~k~i~~~~~~~~i--hsvD-s~~la~~L~~~a~~~~~~~~~~VlIq  123 (227)
T cd06822          48 HFGENYVQELIEKAPDLPIDIKWHF-IGHLQSNKVKKLLKVPNLYMV--ETVD-SEKLADKLNKAWEKLGEREPLKVMVQ  123 (227)
T ss_pred             cccCcHHHHHHHHHHhccCCceEEE-ECCCchhhHHHHhccccccEE--EecC-CHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence            3565566665432 111  244454 3222 123444433 235655  4432 233444455555556  655444  4


Q ss_pred             EcCCC-------CHHHHHHhh-------cccceEEEEeeecCCCC-cccchhhHHHHHHHHHHHhhc-CCC--CeEEEeC
Q 029661           81 LNPAT-------SLSAIECVL-------DVVDLVLIMSVNPGFGG-QSFIESQVKKISDLRRMCLEK-GVN--PWIEVDG  142 (190)
Q Consensus        81 i~p~t-------~~~~~~~~~-------~~~d~i~~m~v~pG~~g-q~~~~~~~~ki~~~~~~~~~~-~~~--~~i~vdG  142 (190)
                      +|...       +.+.+.+++       +.+.+.-+|+..|-... +.-....+++++++++.+.+. +..  ++ .+..
T Consensus       124 Vn~g~e~~K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~~~~~~~~~~r~~f~~l~~l~~~L~~~~g~~~~~~-~lSm  202 (227)
T cd06822         124 VNTSGEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDL-ELSM  202 (227)
T ss_pred             EeCCCCCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEe
Confidence            55333       113233322       23456677877543222 122234577788877776654 333  23 4677


Q ss_pred             CCCcccHHHHHHcCCCEEEEcccccC
Q 029661          143 GVGPKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       143 GI~~e~~~~~~~aGad~~VvGsaI~~  168 (190)
                      |.|++ ....++.|++.+=+||+||+
T Consensus       203 GmS~D-~~~Ai~~GsT~VRiGt~IFg  227 (227)
T cd06822         203 GMSAD-FEHAIEMGSTNVRVGSAIFG  227 (227)
T ss_pred             cccHh-HHHHHHcCCCEEeCCchhcC
Confidence            77766 44467799999999999995

This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=91.42  E-value=8.2  Score=33.08  Aligned_cols=142  Identities=13%  Similarity=0.145  Sum_probs=80.2

Q ss_pred             CCHHHHHHhcc---CCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661           11 IGPLVVDALRP---VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL   87 (190)
Q Consensus        11 ~G~~~v~~i~~---~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~   87 (190)
                      +|.+-++.|++   .+++++....|-..   .++.+.+. +|++-+....  ..+ ..+++++-+.|+.+.+--.+...+
T Consensus       141 ~g~~gL~~L~~~~~~~Gl~v~tev~d~~---~~~~l~~~-vd~lqIgAr~--~~N-~~LL~~va~~~kPViLk~G~~~ti  213 (335)
T PRK08673        141 LGEEGLKLLAEAREETGLPIVTEVMDPR---DVELVAEY-VDILQIGARN--MQN-FDLLKEVGKTNKPVLLKRGMSATI  213 (335)
T ss_pred             ccHHHHHHHHHHHHHcCCcEEEeeCCHH---HHHHHHHh-CCeEEECccc--ccC-HHHHHHHHcCCCcEEEeCCCCCCH
Confidence            34455555544   47888888665543   34555666 8999998764  333 458888888899888877766344


Q ss_pred             HHHHH---hhc---ccceEEEEeeecCCCCc-ccchhh--HHHHHHHHHHHhhcCCCCeEEEeCCCCc-------ccHHH
Q 029661           88 SAIEC---VLD---VVDLVLIMSVNPGFGGQ-SFIESQ--VKKISDLRRMCLEKGVNPWIEVDGGVGP-------KNAYK  151 (190)
Q Consensus        88 ~~~~~---~~~---~~d~i~~m~v~pG~~gq-~~~~~~--~~ki~~~~~~~~~~~~~~~i~vdGGI~~-------e~~~~  151 (190)
                      +.+..   ++.   .-+.+++   +-|...- ......  +..+..+|+.     +++++.+|-+=+.       .....
T Consensus       214 ~E~l~A~e~i~~~GN~~viL~---erG~~tf~~~~~~~ldl~ai~~lk~~-----~~lPVi~d~sH~~G~~~~v~~~a~A  285 (335)
T PRK08673        214 EEWLMAAEYILAEGNPNVILC---ERGIRTFETATRNTLDLSAVPVIKKL-----THLPVIVDPSHATGKRDLVEPLALA  285 (335)
T ss_pred             HHHHHHHHHHHHcCCCeEEEE---ECCCCCCCCcChhhhhHHHHHHHHHh-----cCCCEEEeCCCCCccccchHHHHHH
Confidence            33222   221   1233433   3333111 111222  4445555544     2467766533222       23456


Q ss_pred             HHHcCCCEEEEccccc
Q 029661          152 VIEAGANALVAGSAVF  167 (190)
Q Consensus       152 ~~~aGad~~VvGsaI~  167 (190)
                      .+.+|||++++-.-..
T Consensus       286 AvA~GAdGliIE~H~~  301 (335)
T PRK08673        286 AVAAGADGLIVEVHPD  301 (335)
T ss_pred             HHHhCCCEEEEEecCC
Confidence            6889999998876544

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=91.39  E-value=4.4  Score=33.77  Aligned_cols=114  Identities=18%  Similarity=0.093  Sum_probs=63.5

Q ss_pred             HHHHHHhccCCCCcEEEEEee--cChHHHHHHHHHcCCCEEEEcc---------cCC-----------Cc----chHHHH
Q 029661           13 PLVVDALRPVTDLPLDVHLMI--VEPEQRVPDFIKAGADIVSVHC---------EQS-----------ST----IHLHRT   66 (190)
Q Consensus        13 ~~~v~~i~~~~~~~i~~hlmv--~dp~~~i~~~~~~Gad~v~vh~---------e~~-----------~~----~~~~~~   66 (190)
                      .++++++|+..++|+.+.+-.  .+...+.+.+.++|+|+++++-         +..           +.    ....+.
T Consensus       146 ~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~  225 (301)
T PRK07259        146 YEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRM  225 (301)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHH
Confidence            566777887778899986642  2344567788999999998731         100           00    001345


Q ss_pred             HHHHHHh-CCcEEEEEcCCCCHHHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHH-HHHHHHhhcC
Q 029661           67 LNQIKDL-GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKIS-DLRRMCLEKG  133 (190)
Q Consensus        67 i~~i~~~-g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~-~~~~~~~~~~  133 (190)
                      +..+++. ++ +.+...--+..+.+.+++ ..+|.|.+-+-      --..|..+++++ .+.++..+++
T Consensus       226 v~~i~~~~~i-pvi~~GGI~~~~da~~~l~aGAd~V~igr~------ll~~P~~~~~i~~~l~~~~~~~g  288 (301)
T PRK07259        226 VYQVYQAVDI-PIIGMGGISSAEDAIEFIMAGASAVQVGTA------NFYDPYAFPKIIEGLEAYLDKYG  288 (301)
T ss_pred             HHHHHHhCCC-CEEEECCCCCHHHHHHHHHcCCCceeEcHH------HhcCcHHHHHHHHHHHHHHHHcC
Confidence            6666664 33 334444434555556654 45888765221      112455666554 4445555444

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain

Probab=91.31  E-value=3.1  Score=34.69  Aligned_cols=129  Identities=17%  Similarity=0.117  Sum_probs=72.8

Q ss_pred             cEEEEEeecChHHHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHhCCcEEEEEcCCCCH----
Q 029661           26 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLNPATSL----   87 (190)
Q Consensus        26 ~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~g~~~g~~i~p~t~~----   87 (190)
                      .+.++ ...+... ++.+.++|++.|.+..-+.              ..+.+.+.++.+|++|+++.+.+.-.++.    
T Consensus        68 ~v~~~-~r~~~~d-ie~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~  145 (279)
T cd07947          68 EVTGW-IRANKED-LKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYG  145 (279)
T ss_pred             EEEEE-ecCCHHH-HHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCccc
Confidence            35554 4455444 5888999999999853221              12235667778889999988776533322    


Q ss_pred             ---HHHHHhhc-----ccc-eEEEEeeecCCCCccc-----chhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccH
Q 029661           88 ---SAIECVLD-----VVD-LVLIMSVNPGFGGQSF-----IESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNA  149 (190)
Q Consensus        88 ---~~~~~~~~-----~~d-~i~~m~v~pG~~gq~~-----~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~  149 (190)
                         +.++++.+     .+| .|.+ +=..|... ++     +.++.+.++.+++..+  -.+.+|++    |-|....|.
T Consensus       146 ~v~~~~~~~~~~~~~~G~~~~i~l-~DTvG~a~-P~~~~~~p~~v~~l~~~l~~~~~--~p~~~l~~H~Hn~~Gla~AN~  221 (279)
T cd07947         146 FVLPFVNKLMKLSKESGIPVKIRL-CDTLGYGV-PYPGASLPRSVPKIIYGLRKDCG--VPSENLEWHGHNDFYKAVANA  221 (279)
T ss_pred             chHHHHHHHHHHHHHCCCCEEEEe-ccCCCcCC-ccccccchHHHHHHHHHHHHhcC--CCCceEEEEecCCCChHHHHH
Confidence               34555554     256 3433 22223221 11     1344555666665421  01123443    556666677


Q ss_pred             HHHHHcCCCEE
Q 029661          150 YKVIEAGANAL  160 (190)
Q Consensus       150 ~~~~~aGad~~  160 (190)
                      -..+++|++.+
T Consensus       222 laA~~aG~~~v  232 (279)
T cd07947         222 VAAWLYGASWV  232 (279)
T ss_pred             HHHHHhCCCEE
Confidence            78899999975

Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with

>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family

Probab=91.28  E-value=4.8  Score=32.81  Aligned_cols=125  Identities=18%  Similarity=0.225  Sum_probs=67.4

Q ss_pred             cCh-HHHHHHHHHcCCCEEEEcc---cCC----CcchHHHHHHHHHHhCCcEEEEEcCCCCH--------HHHHHhhccc
Q 029661           34 VEP-EQRVPDFIKAGADIVSVHC---EQS----STIHLHRTLNQIKDLGAKAGVVLNPATSL--------SAIECVLDVV   97 (190)
Q Consensus        34 ~dp-~~~i~~~~~~Gad~v~vh~---e~~----~~~~~~~~i~~i~~~g~~~g~~i~p~t~~--------~~~~~~~~~~   97 (190)
                      -|+ .+.++++.+.|+|.++.|-   ...    .......-++.+.++|+-+.-+   .|++        ..+.+.+..-
T Consensus        43 lD~t~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~~~~li~~~I~vy~~---Ht~lD~~~~G~n~~La~~Lgl~  119 (249)
T TIGR00486        43 VDASESVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGRLKILLQNDISLYSA---HTNLDAHDGGNNDALARALGLE  119 (249)
T ss_pred             ecCCHHHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHHHHHHHHCCCeEEEe---ecchhcCCCCHHHHHHHHcCCC
Confidence            355 3468899999999999982   110    0122333377788888765433   2332        2344444332


Q ss_pred             ceEEEEeeec-CCC--CcccchhhH-HHHHHHHHHHhhc-----C-C--C-CeEEEeCCCCcccHHHHHHcCCCEEEEcc
Q 029661           98 DLVLIMSVNP-GFG--GQSFIESQV-KKISDLRRMCLEK-----G-V--N-PWIEVDGGVGPKNAYKVIEAGANALVAGS  164 (190)
Q Consensus        98 d~i~~m~v~p-G~~--gq~~~~~~~-~ki~~~~~~~~~~-----~-~--~-~~i~vdGGI~~e~~~~~~~aGad~~VvGs  164 (190)
                      +.-   ...+ |.+  |..-.|.++ +-++++++.++-.     + .  . -+|++-+|-....+..+.+.|||.+|-|-
T Consensus       120 ~~~---~~~~~g~G~vg~l~~~~~~~~~~~~vk~~l~~~~vr~~~~~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~ITGd  196 (249)
T TIGR00486       120 NPK---EFEDYGLGRVGEFKAPIESLEEVLEIKKVLNVKPLLVVKNGPEYVKKVAVVSGSGLSFIMKALREGVDAYITGD  196 (249)
T ss_pred             ccc---cccCCCceeEEECCCCCCHHHHHHHHHHHhCCCCEEEeCCCCCceeEEEEEcCchHHHHHHHHHcCCCEEEecC
Confidence            211   1121 222  211122222 2234444443210     0 0  1 15888888888788888899999999884

The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.

>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional

Probab=91.27  E-value=4.8  Score=34.27  Aligned_cols=117  Identities=12%  Similarity=0.062  Sum_probs=64.4

Q ss_pred             HHHHHhccCCCCcEEEEEeec----ChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661           14 LVVDALRPVTDLPLDVHLMIV----EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA   89 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv~----dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~   89 (190)
                      ..++.+.+.+++|+.++- +.    ||..+-+.+..++-.--.+..-  +.++.+++...++++|..++... +. +++.
T Consensus       114 ~~Vk~V~eavd~PL~Id~-s~n~~kD~evleaale~~~g~~pLInSa--t~en~~~i~~lA~~y~~~Vva~s-~~-Dln~  188 (319)
T PRK04452        114 KTVEEVLQAVDVPLIIGG-SGNPEKDAEVLEKVAEAAEGERCLLGSA--EEDNYKKIAAAAMAYGHAVIAWS-PL-DINL  188 (319)
T ss_pred             HHHHHHHHhCCCCEEEec-CCCCCCCHHHHHHHHHHhCCCCCEEEEC--CHHHHHHHHHHHHHhCCeEEEEc-HH-HHHH
Confidence            356666666888887532 33    6665544444444232333333  25578899999999998766543 22 2554


Q ss_pred             HHHhhcc-----c--ceEEEEeeecCCC----CcccchhhHHHHHHHHHHHhhcCCCCeEE
Q 029661           90 IECVLDV-----V--DLVLIMSVNPGFG----GQSFIESQVKKISDLRRMCLEKGVNPWIE  139 (190)
Q Consensus        90 ~~~~~~~-----~--d~i~~m~v~pG~~----gq~~~~~~~~ki~~~~~~~~~~~~~~~i~  139 (190)
                      ++++...     +  +.|++   +|+..    |+...-..+++||++-=. +++.+.+++.
T Consensus       189 ak~L~~~l~~~Gi~~edIvi---DP~~~~lg~g~e~~~~~~e~IR~aAl~-~d~~l~~P~i  245 (319)
T PRK04452        189 AKQLNILLTELGVPRERIVM---DPTTGALGYGIEYSYSVMERIRLAALK-GDEMLQMPMI  245 (319)
T ss_pred             HHHHHHHHHHcCCCHHHEEE---eCCcccccCCHHHHHHHHHHHHHHHhc-CCCcCCCCeE
Confidence            4444321     2  33332   67765    666555556666554332 3444566653

>PRK06354 pyruvate kinase; Provisional

Probab=91.24  E-value=6.7  Score=36.23  Aligned_cols=140  Identities=13%  Similarity=0.157  Sum_probs=84.2

Q ss_pred             HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHH-hCCcEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCC-Cccc
Q 029661           39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-LGAKAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFG-GQSF  114 (190)
Q Consensus        39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~-~g~~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~-gq~~  114 (190)
                      .++...+.|+|+|.+-.-- +.+++.++-+.+.+ .|....+...-+|+  ++.+.++++.+|-|++-.-+-|.. |   
T Consensus       183 di~f~~~~~vD~ia~SFVr-~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~g---  258 (590)
T PRK06354        183 DLIFGLEQGVDWIALSFVR-NPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELCDGLMVARGDLGVEIP---  258 (590)
T ss_pred             HHHHHHHcCCCEEEEcCCC-CHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEEccchhhcccC---
Confidence            4566789999999987543 34567677777744 36566665544444  678889988899998732222211 1   


Q ss_pred             chhhHHHHHHHHHHHhhcCCCCeEEEeCCC--------Cc-----ccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661          115 IESQVKKISDLRRMCLEKGVNPWIEVDGGV--------GP-----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       115 ~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI--------~~-----e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~  181 (190)
                      .+......+++.+.+.+.+.  ++-+.-=+        .|     ..+..++--|+|.+.+..-=-....|.++++.+++
T Consensus       259 ~e~v~~~qk~ii~~~~~~gk--pvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~yPveaV~~m~~  336 (590)
T PRK06354        259 AEEVPLLQKRLIKKANRLGK--PVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGDYPVEAVQTMAT  336 (590)
T ss_pred             cHHHHHHHHHHHHHHHHcCC--CEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCCCHHHHHHHHHH
Confidence            23334444455454444443  22222111        11     15556777899999987443334688999988887


Q ss_pred             hhc
Q 029661          182 SKR  184 (190)
Q Consensus       182 ~~~  184 (190)
                      .+.
T Consensus       337 I~~  339 (590)
T PRK06354        337 IAV  339 (590)
T ss_pred             HHH
Confidence            553

>PF14871 GHL6: Hypothetical glycosyl hydrolase 6

Probab=91.23  E-value=1.4  Score=32.55  Aligned_cols=53  Identities=13%  Similarity=0.172  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHcCCCEEEEccc-----C------------CCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661           35 EPEQRVPDFIKAGADIVSVHCE-----Q------------SSTIHLHRTLNQIKDLGAKAGVVLNPATSL   87 (190)
Q Consensus        35 dp~~~i~~~~~~Gad~v~vh~e-----~------------~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~   87 (190)
                      ||+++++.+.++|+|.+++.+-     +            ...+-+.++++++++.|+++..-++....-
T Consensus         1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~   70 (132)
T PF14871_consen    1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDE   70 (132)
T ss_pred             CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecCh
Confidence            6889999999999999999211     0            012336899999999999998877766443

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=91.20  E-value=0.72  Score=41.65  Aligned_cols=77  Identities=19%  Similarity=0.266  Sum_probs=48.9

Q ss_pred             EEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661           77 AGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE  154 (190)
Q Consensus        77 ~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~  154 (190)
                      ++-++++....++.+.+++ .+|.|.+ ...+|.+     ...++.|+++|+..+.   +..| ..|.|- ++.+..+++
T Consensus       234 V~~av~~~~~~~ra~~Lv~aGvd~i~v-d~a~g~~-----~~~~~~i~~ir~~~~~---~~~V-~aGnV~t~e~a~~li~  303 (502)
T PRK07107        234 VGAGINTRDYAERVPALVEAGADVLCI-DSSEGYS-----EWQKRTLDWIREKYGD---SVKV-GAGNVVDREGFRYLAE  303 (502)
T ss_pred             eeeccChhhHHHHHHHHHHhCCCeEee-cCccccc-----HHHHHHHHHHHHhCCC---CceE-EeccccCHHHHHHHHH
Confidence            3445555433566666665 4888765 2334432     2457778888876541   1323 455555 789999999


Q ss_pred             cCCCEEEEc
Q 029661          155 AGANALVAG  163 (190)
Q Consensus       155 aGad~~VvG  163 (190)
                      +|||++.+|
T Consensus       304 aGAd~I~vg  312 (502)
T PRK07107        304 AGADFVKVG  312 (502)
T ss_pred             cCCCEEEEC
Confidence            999999993

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain

Probab=91.11  E-value=4  Score=33.97  Aligned_cols=124  Identities=13%  Similarity=0.063  Sum_probs=74.6

Q ss_pred             HHHHHHHHHcC-----CCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcCCCCHHHHHHhhc-ccceEEE-EeeecC
Q 029661           37 EQRVPDFIKAG-----ADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLD-VVDLVLI-MSVNPG  108 (190)
Q Consensus        37 ~~~i~~~~~~G-----ad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p~t~~~~~~~~~~-~~d~i~~-m~v~pG  108 (190)
                      .++++.+.++|     .+.|=+....  ..+.+ .+..+.+.+. ..++........+.++..++ .+|.|.+ +++.+.
T Consensus        24 v~i~~~L~~~G~~~~~v~~IE~~s~~--~~d~~-~v~~~~~~~~~~~~v~~~~r~~~~die~A~~~g~~~v~i~~s~S~~  100 (279)
T cd07947          24 VKIYDYLHELGGGSGVIRQTEFFLYT--EKDRE-AVEACLDRGYKFPEVTGWIRANKEDLKLVKEMGLKETGILMSVSDY  100 (279)
T ss_pred             HHHHHHHHHcCCCCCccceEEecCcC--hHHHH-HHHHHHHcCCCCCEEEEEecCCHHHHHHHHHcCcCEEEEEEcCCHH
Confidence            35788899999     9988886542  33443 4444445554 34554332222344444443 4665543 344333


Q ss_pred             CCCccc---chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc-------cHHHHHH----cCCC-EEEEc
Q 029661          109 FGGQSF---IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-------NAYKVIE----AGAN-ALVAG  163 (190)
Q Consensus       109 ~~gq~~---~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e-------~~~~~~~----aGad-~~VvG  163 (190)
                      +.-.++   .++.+++++++.++.++++..+.+.+.|..+++       .+.++.+    +|+| .+-+.
T Consensus       101 ~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~  170 (279)
T cd07947         101 HIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLC  170 (279)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEec
Confidence            221122   477788888888888887777788888888762       4666666    8999 45444

Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with

>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type

Probab=91.06  E-value=8.1  Score=32.17  Aligned_cols=137  Identities=13%  Similarity=0.232  Sum_probs=76.0

Q ss_pred             HHHHHHHHcCCCEEEEcccCC-C-cchHHHHHHHHHH-hCCcEEEEEc-CCCCHHHHHHhhc-----ccceEEEEeeecC
Q 029661           38 QRVPDFIKAGADIVSVHCEQS-S-TIHLHRTLNQIKD-LGAKAGVVLN-PATSLSAIECVLD-----VVDLVLIMSVNPG  108 (190)
Q Consensus        38 ~~i~~~~~~Gad~v~vh~e~~-~-~~~~~~~i~~i~~-~g~~~g~~i~-p~t~~~~~~~~~~-----~~d~i~~m~v~pG  108 (190)
                      ..++.+.+.+.+.|++-..++ + .+.--++...+++ .|+.+..=+. -+..-..++.++.     .++-|++++-+|.
T Consensus        20 ~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p   99 (281)
T TIGR00677        20 ERMDRMVASGPLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPP   99 (281)
T ss_pred             HHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            346677889999999976542 1 1222345566664 4888865332 3333345555542     3777888777663


Q ss_pred             CCC-------cccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc-------------cHHHHHHcCCCEEEEcccccC
Q 029661          109 FGG-------QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-------------NAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       109 ~~g-------q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e-------------~~~~~~~aGad~~VvGsaI~~  168 (190)
                      ..+       ..|.. ..+.|+.+|+..+   .++.|.+  +..||             .+++=+++||| +++--.+|.
T Consensus       100 ~~~~~~~~~~~~f~~-a~~Li~~i~~~~~---~~f~igv--a~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~-f~iTQ~~Fd  172 (281)
T TIGR00677       100 HIGDDWTEVEGGFQY-AVDLVKYIRSKYG---DYFCIGV--AGYPEGHPEAESVELDLKYLKEKVDAGAD-FIITQLFYD  172 (281)
T ss_pred             CCCCCCCCCCCCCcC-HHHHHHHHHHhCC---CceEEEE--EECCCCCCCCCCHHHHHHHHHHHHHcCCC-Eeeccceec
Confidence            222       12333 6666777665532   2244444  44432             22222369999 555667777


Q ss_pred             CCCHHHHHHHHHH
Q 029661          169 AKDYAEAIKGIKT  181 (190)
Q Consensus       169 ~~dp~~~~~~l~~  181 (190)
                      .+...+.++++++
T Consensus       173 ~~~~~~f~~~~~~  185 (281)
T TIGR00677       173 VDNFLKFVNDCRA  185 (281)
T ss_pred             HHHHHHHHHHHHH
Confidence            6555555555554

This protein is an FAD-containing flavoprotein.

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ

Probab=91.05  E-value=0.56  Score=41.74  Aligned_cols=79  Identities=16%  Similarity=0.217  Sum_probs=49.4

Q ss_pred             HHHHHhccCCCCcEEEEEee-cChHHHHHHHHHcCCCEEEEcccCCCc------------chHHHHHHHHHHhCCcEEEE
Q 029661           14 LVVDALRPVTDLPLDVHLMI-VEPEQRVPDFIKAGADIVSVHCEQSST------------IHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        14 ~~v~~i~~~~~~~i~~hlmv-~dp~~~i~~~~~~Gad~v~vh~e~~~~------------~~~~~~i~~i~~~g~~~g~~   80 (190)
                      ++.+.|++. ++.+.+..-. .+ .+.++.+.++|+..+.+..|+++.            ++..+.++.++++|+.+...
T Consensus       265 ~l~~~l~~~-~i~~~~~~~~~~~-~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~  342 (472)
T TIGR03471       265 EIARKLGPL-GVTWSCNARANVD-YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGT  342 (472)
T ss_pred             HHHHHHhhc-CceEEEEecCCCC-HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence            344444442 4444443322 23 347888999999999999998521            23556788888999988643


Q ss_pred             --Ec-CCCCHHHHHHhh
Q 029661           81 --LN-PATSLSAIECVL   94 (190)
Q Consensus        81 --i~-p~t~~~~~~~~~   94 (190)
                        +. |....+.+++.+
T Consensus       343 ~IiGlPget~e~~~~ti  359 (472)
T TIGR03471       343 FILGLPGETRETIRKTI  359 (472)
T ss_pred             EEEeCCCCCHHHHHHHH
Confidence              33 555555555544

One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.

>COG0320 LipA Lipoate synthase [Coenzyme metabolism]

Probab=91.03  E-value=6.3  Score=32.91  Aligned_cols=130  Identities=20%  Similarity=0.255  Sum_probs=86.3

Q ss_pred             ChHHHHHHHHHcCCCEEEEcccC------CCcchHHHHHHHHHHhCCcEEE-EEcCCCC--HHHHHHhhcc-cceEE---
Q 029661           35 EPEQRVPDFIKAGADIVSVHCEQ------SSTIHLHRTLNQIKDLGAKAGV-VLNPATS--LSAIECVLDV-VDLVL---  101 (190)
Q Consensus        35 dp~~~i~~~~~~Gad~v~vh~e~------~~~~~~~~~i~~i~~~g~~~g~-~i~p~t~--~~~~~~~~~~-~d~i~---  101 (190)
                      .|.+..+...+.|-++|.+-..+      +.-.+..+++++||+.+=...+ .+.|+..  ...++.+++. .|...   
T Consensus       101 EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNv  180 (306)
T COG0320         101 EPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAGPDVFNHNV  180 (306)
T ss_pred             hHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhcCcchhhccc
Confidence            36778888899999999986432      1124578899999998755555 4555544  2344444443 34321   


Q ss_pred             ------EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc----ccHHHHHHcCCCEEEEcccccC
Q 029661          102 ------IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP----KNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       102 ------~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~----e~~~~~~~aGad~~VvGsaI~~  168 (190)
                            .-.|.||.+-    ...++-+++.+++.++.-.+..|.++=|=+.    ++..++.++|+|++.+|-++--
T Consensus       181 ETVprL~~~VRp~A~Y----~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqP  253 (306)
T COG0320         181 ETVPRLYPRVRPGATY----ERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQP  253 (306)
T ss_pred             ccchhcccccCCCCcH----HHHHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCC
Confidence                  1233455432    3467778888887655433445778888774    4778899999999999998863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
1rpx_A	230	D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tub		4e-97
1tqj_A	230	Crystal Structure Of D-Ribulose 5-Phosphate 3-Epime		3e-72
2fli_A	220	The Crystal Structure Of D-Ribulose 5-Phosphate 3-E		4e-44
3inp_A	246	2.05 Angstrom Resolution Crystal Structure Of D-Rib		8e-34
1h1y_A	228	The Structure Of The Cytosolic D-Ribulose-5-Phospha		9e-30
3ovp_A	228	Crystal Structure Of Hrpe Length = 228		3e-28
3ct7_A	231	Crystal Structure Of D-Allulose 6-Phosphate 3-Epime		1e-27
3qc3_A	225	Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epi		3e-24
1tqx_A	227	Crystal Structure Of Pfal009167 A Putative D-Ribulo		9e-23

>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum Chloroplasts Length = 230

Iteration: 1
 Score =  350 bits (897), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 169/186 (90%), Positives = 179/186 (96%)
Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSST
Sbjct: 45  MDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST 104
Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 105 IHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVK 164
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLR++C E+G+NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIK
Sbjct: 165 KISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIK 224
Query: 181 TSKRPQ 186
           TSKRP+
Sbjct: 225 TSKRPE 230

>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1.6 Angstrom Resolution Length = 230

Iteration: 1
 Score =  267 bits (682), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 154/186 (82%)
Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPL+VDA+RP+T   LDVHLMIVEPE+ V DF KAGADI+SVH E +++
Sbjct: 39  MDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNAS 98
Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            HLHRTL QI++LG KAG VLNP+T L  +E VL V DL+LIMSVNPGFGGQSFI   + 
Sbjct: 99  PHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLP 158
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KI  LR+MC E+G++PWIEVDGG+ P N ++V+EAGANA+VAGSAVF A +YAEAI G++
Sbjct: 159 KIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVR 218
Query: 181 TSKRPQ 186
            SKRP+
Sbjct: 219 NSKRPE 224

>pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate Length = 220

Iteration: 1
 Score =  173 bits (439), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 125/182 (68%), Gaps = 2/182 (1%)
Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG+FVPNI+ G  VV ++R  + L  D HLM+V+PE+ V  F +AGADI+++H E  ST
Sbjct: 38  MDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTE--ST 95
Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            H+H  L +IK  G KAGVV+NP T  +A+E +LD+VD VLIM+VNPGFGGQ+FI   ++
Sbjct: 96  RHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLE 155
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           K++ + +   EKG++  IEVDGGV  K      EAGAN  VAGS +F A D    ++ ++
Sbjct: 156 KVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLR 215
Query: 181 TS 182
           T+
Sbjct: 216 TA 217

>pdb|3INP|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of D-Ribulose-Phosphate 3- Epimerase From Francisella Tularensis Length = 246

Iteration: 1
 Score =  139 bits (351), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 106/181 (58%), Gaps = 3/181 (1%)
Query: 1   MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
           MD  +VPN+T GP+V+ ALR       +DVHLM+   +  +  F KAGA  +  H E S 
Sbjct: 62  MDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASE 121
Query: 60  TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
             H+ R+L  IK  G +AG+ LNPAT +  ++ V   +D VLIMSVNPGFGGQ FI + +
Sbjct: 122 --HIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAML 179
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
            K  ++ +       +  +E+DGGV P N  ++   G NA VAGSA+F +  Y + I  +
Sbjct: 180 DKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKM 239
Query: 180 K 180
           +
Sbjct: 240 R 240

>pdb|1H1Y|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3- Epimerase From Rice Complexed With Sulfate Length = 228

Iteration: 1
 Score =  126 bits (316), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPN+TIG  V+ +LR  T   LD HLM+  P   V    KAGA   + H E S  
Sbjct: 41  MDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD 100
Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV---VDLVLIMSVNPGFGGQSFIES 117
            +    +  IK  G + GV L P T +  +  +++    V+LVL+M+V PGFGGQ F+  
Sbjct: 101 -NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPE 159
Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
            ++K+  LR+    K  +  IEVDGG+GP        AGAN +VAGS++FGA +  E I 
Sbjct: 160 MMEKVRALRK----KYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVIS 215
Query: 178 GIKTS 182
            ++ S
Sbjct: 216 ALRKS 220

>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe Length = 228

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 1   MDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 58
           MDG FVPNIT G  VV++LR     D   D+H+M+ +PEQ V     AGA+  + H E  
Sbjct: 39  MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE-- 96
Query: 59  STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 118
           +T +    +  I++ G K G+ + P TS+  +    + +D+ L+M+V PGFGGQ F+E  
Sbjct: 97  ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDM 156
Query: 119 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 171
           + K+  LR           IEVDGGVGP   +K  EAGAN +V+GSA+  ++D
Sbjct: 157 MPKVHWLRTQFPSLD----IEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSED 205

>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase From Escherichia Coli K-12 Length = 231

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 3/176 (1%)
Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPN+T+ P  V  ++ +   PLD HLM+  P+  +    +AGAD +++H E  + 
Sbjct: 34  MDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETING 93
Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
               R +++I+    K G++LNP T + A++  +   D + +M+V+PGF GQ FI   + 
Sbjct: 94  -QAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLD 152
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 176
           K+++L+     +G+   IEVDG        K++ AGA+  + G++  G  ++AE I
Sbjct: 153 KLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTS--GLFNHAENI 206

>pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase (Np_954699) From Homo Sapiens At 2.20 A Resolution Length = 225

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 93/172 (54%), Gaps = 8/172 (4%)
Query: 2   DGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
           DG FVPNIT G  VV++LR     D   D H  + +PEQ V     AGA+  + H E  +
Sbjct: 41  DGHFVPNITFGHPVVESLRKQLGQDPFFDXHXXVSKPEQWVKPXAVAGANQYTFHLE--A 98
Query: 60  TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
           T +    +  I++ G K G+ + P TS+  +    + +D  L+ +V PGFGGQ F E   
Sbjct: 99  TENPGALIKDIRENGXKVGLAIKPGTSVEYLAPWANQIDXALVXTVEPGFGGQKFXEDXX 158
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 171
            K+  LR           IEVDGGVGP   +K  EAGAN +V+GSA+  ++D
Sbjct: 159 PKVHWLRTQFPSLD----IEVDGGVGPDTVHKCAEAGANXIVSGSAIXRSED 206

>pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose 5-Phosphate 3- Epimerase From P.Falciparum Length = 227

Iteration: 1
 Score =  103 bits (256), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 11/187 (5%)
Query: 1   MDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE--Q 57
           MD  FVPN++ GP V++ L+  T  +  DVHLM+  PE+ VP  +   ++ ++ H E   
Sbjct: 40  MDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVP--LLKTSNQLTFHFEALN 97
Query: 58  SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFI 115
             T    +   +I+D     G+ + P T +  +  +LD  +++ VL+M+V PGFGGQSF+
Sbjct: 98  EDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFM 157
Query: 116 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEA 175
              + K+S LR+    K  N  I+VDGG+  +        GAN +VAG+++F A+D    
Sbjct: 158 HDMMGKVSFLRK----KYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYV 213
Query: 176 IKGIKTS 182
           I  ++ S
Sbjct: 214 IDTMRVS 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	1e-122
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	1e-121
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	1e-112
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	1e-108
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	1e-103
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	1e-102
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	1e-100
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	2e-96
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	3e-93
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	1e-29
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	2e-28
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	4e-28
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	7e-27
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	6e-23
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	5e-04

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Length = 230

 Score =  343 bits (882), Expect = e-122
 Identities = 169/186 (90%), Positives = 179/186 (96%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSST
Sbjct: 45  MDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST 104

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 105 IHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVK 164

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLR++C E+G+NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIK
Sbjct: 165 KISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIK 224

Query: 181 TSKRPQ 186
           TSKRP+
Sbjct: 225 TSKRPE 230

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Length = 230

 Score =  341 bits (878), Expect = e-121
 Identities = 127/190 (66%), Positives = 154/190 (81%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPL+VDA+RP+T   LDVHLMIVEPE+ V DF KAGADI+SVH E +++
Sbjct: 39  MDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNAS 98

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            HLHRTL QI++LG KAG VLNP+T L  +E VL V DL+LIMSVNPGFGGQSFI   + 
Sbjct: 99  PHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLP 158

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KI  LR+MC E+G++PWIEVDGG+ P N ++V+EAGANA+VAGSAVF A +YAEAI G++
Sbjct: 159 KIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVR 218

Query: 181 TSKRPQAVAV 190
            SKRP+    
Sbjct: 219 NSKRPEPQLA 228

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Length = 220

 Score =  316 bits (813), Expect = e-112
 Identities = 90/182 (49%), Positives = 125/182 (68%), Gaps = 2/182 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG+FVPNI+ G  VV ++R  + L  D HLM+V+PE+ V  F +AGADI+++H E  ST
Sbjct: 38  MDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTE--ST 95

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            H+H  L +IK  G KAGVV+NP T  +A+E +LD+VD VLIM+VNPGFGGQ+FI   ++
Sbjct: 96  RHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLE 155

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           K++ + +   EKG++  IEVDGGV  K      EAGAN  VAGS +F A D    ++ ++
Sbjct: 156 KVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLR 215

Query: 181 TS 182
           T+
Sbjct: 216 TA 217

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Length = 246

 Score =  309 bits (795), Expect = e-108
 Identities = 73/183 (39%), Positives = 107/183 (58%), Gaps = 3/183 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
           MD  +VPN+T GP+V+ ALR       +DVHLM+   +  +  F KAGA  +  H E  +
Sbjct: 62  MDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE--A 119

Query: 60  TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
           + H+ R+L  IK  G +AG+ LNPAT +  ++ V   +D VLIMSVNPGFGGQ FI + +
Sbjct: 120 SEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAML 179

Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
            K  ++ +       +  +E+DGGV P N  ++   G NA VAGSA+F +  Y + I  +
Sbjct: 180 DKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKM 239

Query: 180 KTS 182
           +  
Sbjct: 240 RDE 242

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Length = 231

 Score =  296 bits (761), Expect = e-103
 Identities = 58/184 (31%), Positives = 102/184 (55%), Gaps = 3/184 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPN+T+ P  V  ++ +   PLD HLM+  P+  +    +AGAD +++H E +  
Sbjct: 34  MDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPE-TIN 92

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
               R +++I+    K G++LNP T + A++  +   D + +M+V+PGF GQ FI   + 
Sbjct: 93  GQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLD 152

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF--GAKDYAEAIKG 178
           K+++L+     +G+   IEVDG        K++ AGA+  + G++     A++  EA + 
Sbjct: 153 KLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRI 212

Query: 179 IKTS 182
           +   
Sbjct: 213 MTAQ 216

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Length = 228

 Score =  293 bits (753), Expect = e-102
 Identities = 74/185 (40%), Positives = 103/185 (55%), Gaps = 8/185 (4%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPN+TIG  V+ +LR  T   LD HLM+  P   V    KAGA   + H E S  
Sbjct: 41  MDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD 100

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV---VDLVLIMSVNPGFGGQSFIES 117
            +    +  IK  G + GV L P T +  +  +++    V+LVL+M+V PGFGGQ F+  
Sbjct: 101 -NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPE 159

Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
            ++K+  LR+       +  IEVDGG+GP        AGAN +VAGS++FGA +  E I 
Sbjct: 160 MMEKVRALRKKYP----SLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVIS 215

Query: 178 GIKTS 182
            ++ S
Sbjct: 216 ALRKS 220

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A Length = 228

 Score =  288 bits (739), Expect = e-100
 Identities = 71/184 (38%), Positives = 105/184 (57%), Gaps = 8/184 (4%)

Query: 1   MDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 58
           MDG FVPNIT G  VV++LR     D   D+H+M+ +PEQ V     AGA+  + H E  
Sbjct: 39  MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE-- 96

Query: 59  STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 118
           +T +    +  I++ G K G+ + P TS+  +    + +D+ L+M+V PGFGGQ F+E  
Sbjct: 97  ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDM 156

Query: 119 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 178
           + K+  LR        +  IEVDGGVGP   +K  EAGAN +V+GSA+  ++D    I  
Sbjct: 157 MPKVHWLRTQFP----SLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINL 212

Query: 179 IKTS 182
           ++  
Sbjct: 213 LRNV 216

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} Length = 237

 Score =  278 bits (714), Expect = 2e-96
 Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 16/193 (8%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
            DG+F    T+G + +      T    DVHLM+    +     +  GA++V++  E    
Sbjct: 48  ADGQFSSLFTVGAIGIKYFP--THCFKDVHLMVRNQLEVAKAVVANGANLVTLQLE--QY 103

Query: 61  IHLHRTLNQIKDL---------GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG 111
                T+  +                G  L P T +S +E  LD +D++ +++++P  G 
Sbjct: 104 HDFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYLDQIDVIQLLTLDPRNGT 163

Query: 112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANA--LVAGSAVFGA 169
           +   E  + ++  + +    + V   I +DG +  + A    +       LV+GSA+F  
Sbjct: 164 KYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG 223

Query: 170 KDYAEAIKGIKTS 182
            +    +K  K+S
Sbjct: 224 -ELKTNLKVWKSS 235

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 Length = 227

 Score =  270 bits (692), Expect = 3e-93
 Identities = 63/188 (33%), Positives = 103/188 (54%), Gaps = 13/188 (6%)

Query: 1   MDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
           MD  FVPN++ GP V++ L+  T  +  DVHLM+  PE+ VP      ++ ++ H E + 
Sbjct: 40  MDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLL--KTSNQLTFHFE-AL 96

Query: 60  TIHLHRTL---NQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSF 114
                R +    +I+D     G+ + P T +  +  +LD  +++ VL+M+V PGFGGQSF
Sbjct: 97  NEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSF 156

Query: 115 IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 174
           +   + K+S LR+       N  I+VDGG+  +        GAN +VAG+++F A+D   
Sbjct: 157 MHDMMGKVSFLRKKYK----NLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKY 212

Query: 175 AIKGIKTS 182
            I  ++ S
Sbjct: 213 VIDTMRVS 220

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Length = 221

 Score =  108 bits (270), Expect = 1e-29
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 12/188 (6%)

Query: 1   MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPD-FIKAGADIVSVHCE-- 56
           ++   V  + +G  +V+ LR +  D  +       +    V       GAD ++  C   
Sbjct: 34  IEAGTVCLLQVGSELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWMTCICSAT 93

Query: 57  QSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLDVVDLVLI-MSVNPGFGGQSF 114
             +     + +  I     +  V +    T   A + +   +   +   S +    G+++
Sbjct: 94  IPTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQSRDALLAGETW 153

Query: 115 IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 174
            E  + K+  L        +   + V GG+                +AG  +  AK+ A 
Sbjct: 154 GEKDLNKVKKLI------EMGFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGITEAKNPAG 207

Query: 175 AIKGIKTS 182
           A +  K  
Sbjct: 208 AARAFKDE 215

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* Length = 216

 Score =  104 bits (260), Expect = 2e-28
 Identities = 30/186 (16%), Positives = 65/186 (34%), Gaps = 11/186 (5%)

Query: 1   MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPD-FIKAGADIVSVHCEQS 58
           ++   +  +  G   V  L+ +     +     I +  + +     +A AD V+V C  +
Sbjct: 32  IEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVIC-CA 90

Query: 59  STIHLHRTLNQIKDLGAKAGVVLNPATSL-SAIECVLDVVDLVLI-MSVNPGFGGQSFIE 116
                   L+  K+      + L    +   A +     +  V+   S +    G ++ E
Sbjct: 91  DINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGE 150

Query: 117 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 176
           + +  I  L        +   + V GG+  ++         +  +AG ++  A    EA 
Sbjct: 151 ADITAIKRLS------DMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAA 204

Query: 177 KGIKTS 182
           +  K S
Sbjct: 205 RQFKRS 210

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Length = 207

 Score =  103 bits (258), Expect = 4e-28
 Identities = 34/184 (18%), Positives = 66/184 (35%), Gaps = 9/184 (4%)

Query: 1   MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPD-FIKAGADIVSVHCEQS 58
           ++         G  V+ A++    D  +   +  ++  +   D   KAGAD+V+V    +
Sbjct: 29  IELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGS-A 87

Query: 59  STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 118
               +   +   +       V L      +     +  +     + ++ G   Q+     
Sbjct: 88  DDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRALG-AKFVEMHAGLDEQAKPGFD 146

Query: 119 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 178
           +  +         +       V GGV       V +AGA   VAG A++GA D A A K 
Sbjct: 147 LNGLLAAG-----EKARVPFSVAGGVKVATIPAVQKAGAEVAVAGGAIYGAADPAAAAKE 201

Query: 179 IKTS 182
           ++ +
Sbjct: 202 LRAA 205

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Length = 218

 Score =  100 bits (251), Expect = 7e-27
 Identities = 26/181 (14%), Positives = 61/181 (33%), Gaps = 11/181 (6%)

Query: 1   MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRV-PDFIKAGADIVSVHCEQS 58
           ++   +     G   V  LR    +  L   +   +    +     +AGAD ++V    +
Sbjct: 35  IEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAA-A 93

Query: 59  STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIE 116
               +        +L  +  + +    ++   +  +D  +   +   S +    G  +  
Sbjct: 94  HIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTT 153

Query: 117 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 176
             + K+  L        +   + + GG+ P++ Y          +AG A+ GA+    A 
Sbjct: 154 DDLDKMRQL------SALGIELSITGGIVPEDIYLFEGIKTKTFIAGRALAGAEGQQTAA 207

Query: 177 K 177
            
Sbjct: 208 A 208

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} Length = 211

 Score = 90.3 bits (224), Expect = 6e-23
 Identities = 28/185 (15%), Positives = 66/185 (35%), Gaps = 10/185 (5%)

Query: 1   MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPD-FIKAGADIVSVHCEQS 58
           ++      I  G   + A++       +     I++           AGAD V+V    +
Sbjct: 29  IEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGV-T 87

Query: 59  STIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES 117
             + +   +   K+ G +  V ++      + +  + +      +++V+ G   Q+    
Sbjct: 88  DVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAG--ADMLAVHTGTDQQAAGRK 145

Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
            +  +  + ++         I V GG+  +        G + ++ GSA+  A D A   +
Sbjct: 146 PIDDLITMLKVRR----KARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEAR 201

Query: 178 GIKTS 182
            I   
Sbjct: 202 KISQV 206

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 Length = 215

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           GG+   NA +V++ G + +   SAV GA+D  +A + ++
Sbjct: 169 GGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELR 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1rpxa_	230	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {P	4e-66
d1tqja_	221	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {S	3e-59
d2flia1	217	c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimera	6e-55
d1h1ya_	220	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {R	2e-40
d1tqxa_	221	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {P	4e-38
d1q6oa_	213	c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarbo	2e-34
d2czda1	206	c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decar	3e-08
d1yxya1	230	c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p	5e-08
d1w0ma_	226	c.1.1.1 (A:) Triosephosphate isomerase {Thermoprot	5e-06
d1y0ea_	222	c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph	6e-06
d1xi3a_	206	c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon	9e-06
d1wa3a1	202	c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga marit	2e-05
d1km4a_	212	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	5e-05
d2tpsa_	226	c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus	8e-05
d1hg3a_	224	c.1.1.1 (A:) Triosephosphate isomerase {Archaeon P	7e-04

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 230

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  200 bits (509), Expect = 4e-66
 Identities = 169/186 (90%), Positives = 179/186 (96%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSST
Sbjct: 45  MDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST 104

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
           IHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 105 IHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVK 164

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KISDLR++C E+G+NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIK
Sbjct: 165 KISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIK 224

Query: 181 TSKRPQ 186
           TSKRP+
Sbjct: 225 TSKRPE 230

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 221

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

 Score =  183 bits (464), Expect = 3e-59
 Identities = 127/185 (68%), Positives = 153/185 (82%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDGRFVPNITIGPL+VDA+RP+T   LDVHLMIVEPE+ V DF KAGADI+SVH E +++
Sbjct: 37  MDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNAS 96

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            HLHRTL QI++LG KAG VLNP+T L  +E VL V DL+LIMSVNPGFGGQSFI   + 
Sbjct: 97  PHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLP 156

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           KI  LR+MC E+G++PWIEVDGG+ P N ++V+EAGANA+VAGSAVF A +YAEAI G++
Sbjct: 157 KIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVR 216

Query: 181 TSKRP 185
            SKRP
Sbjct: 217 NSKRP 221

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Length = 217

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  171 bits (434), Expect = 6e-55
 Identities = 89/182 (48%), Positives = 124/182 (68%), Gaps = 2/182 (1%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG+FVPNI+ G  VV ++R  + L  D HLM+V+PE+ V  F +AGADI+++H E   T
Sbjct: 36  MDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTES--T 93

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
            H+H  L +IK  G KAGVV+NP T  +A+E +LD+VD VLIM+VNPGFGGQ+FI   ++
Sbjct: 94  RHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLE 153

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           K++ + +   EKG++  IEVDGGV  K      EAGAN  VAGS +F A D    ++ ++
Sbjct: 154 KVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLR 213

Query: 181 TS 182
           T+
Sbjct: 214 TA 215

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} Length = 220

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

 Score =  134 bits (338), Expect = 2e-40
 Identities = 74/185 (40%), Positives = 101/185 (54%), Gaps = 8/185 (4%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
           MDG FVPN+TIG  V+ +LR  T   LD HLM+  P   V    KAGA   + H E  S 
Sbjct: 36  MDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIE-VSR 94

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAI---ECVLDVVDLVLIMSVNPGFGGQSFIES 117
            +    +  IK  G + GV L P T +  +       + V+LVL+M+V PGFGGQ F+  
Sbjct: 95  DNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPE 154

Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
            ++K+  LR+       +  IEVDGG+GP        AGAN +VAGS++FGA +  E I 
Sbjct: 155 MMEKVRALRKKYP----SLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVIS 210

Query: 178 GIKTS 182
            ++ S
Sbjct: 211 ALRKS 215

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} Length = 221

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

 Score =  128 bits (323), Expect = 4e-38
 Identities = 60/185 (32%), Positives = 96/185 (51%), Gaps = 7/185 (3%)

Query: 1   MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
           MD  FVPN++ GP V++ L+     +  DVHLM+  PE+ VP    +             
Sbjct: 37  MDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKTSNQLTFHFEALNED 96

Query: 60  TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIES 117
           T    +   +I+D     G+ + P T +  +  +LD  +++ VL+M+V PGFGGQSF+  
Sbjct: 97  TERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHD 156

Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
            + K+S LR+       N  I+VDGG+  +        GAN +VAG+++F A+D    I 
Sbjct: 157 MMGKVSFLRKKYK----NLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVID 212

Query: 178 GIKTS 182
            ++ S
Sbjct: 213 TMRVS 217

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

 Score =  118 bits (297), Expect = 2e-34
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 11/186 (5%)

Query: 1   MDGRFVPNITIGPLVVDALRPVTD--LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 58
           ++   +  +  G   V  L+ +    + L    +    +       +A AD V+V C  +
Sbjct: 30  IEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICC-A 88

Query: 59  STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIE 116
                   L+  K+      + L    +    +   D  +  +V   S +    G ++ E
Sbjct: 89  DINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGE 148

Query: 117 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 176
           + +  I  L        +   + V GG+  ++         +  +AG ++  A    EA 
Sbjct: 149 ADITAIKRLSD------MGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAA 202

Query: 177 KGIKTS 182
           +  K S
Sbjct: 203 RQFKRS 208

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} Length = 206

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.2 bits (116), Expect = 3e-08
 Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 7/174 (4%)

Query: 12  GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK 71
           G  ++  L+  T + +   L +      +P+  +  A  V         +H     + + 
Sbjct: 39  GVDIIRRLKEETGVEIIADLKL----ADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVM 94

Query: 72  DLGAKAGVVLNPAT-SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCL 130
            +     +++        A+E +  + D  + ++      G     ++ ++I  +R    
Sbjct: 95  AVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLK 154

Query: 131 EKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184
           E      +    G     A   ++AGA+ ++ G A++ A +  EA K I    R
Sbjct: 155 EG--IKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR 206

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 49.1 bits (116), Expect = 5e-08
 Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 8/155 (5%)

Query: 28  DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 87
                I      V         ++++ C +          + I+ +  K    L  A   
Sbjct: 79  PQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADIS 138

Query: 88  SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P 146
           +  E ++     +  +      G   +   +      L     + G+   +  +G +  P
Sbjct: 139 TFDEGLVAHQAGIDFVGTT-LSGYTPYSRQEAGPDVALIEALCKAGI--AVIAEGKIHSP 195

Query: 147 KNAYKVIEAGANALVAGSAVFG----AKDYAEAIK 177
           + A K+ + G   +V G A+      A+ + EA+K
Sbjct: 196 EEAKKINDLGVAGIVVGGAITRPKEIAERFIEALK 230

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} Length = 226

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

 Score = 43.0 bits (100), Expect = 5e-06
 Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 4/179 (2%)

Query: 5   FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLH 64
              ++ +G +      PV     DV            + IK       V    S      
Sbjct: 42  APNHLELGLVSQSVDIPVYAQGADVEAGGAHTAHVSLENIKEA-GGSGVILNHSEAPLKL 100

Query: 65  RTLNQIKDLGAKAG--VVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 122
             L ++       G  VV+      +++         V +        G++    + + I
Sbjct: 101 NDLARLVAKAKSLGLDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAI 160

Query: 123 SDLRRMCLEKGVNPWIEVDGGVGPKN-AYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
            +   +         +    G+   +     +  G   ++  SA   AKD    I  + 
Sbjct: 161 VETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELA 219

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

 Score = 42.9 bits (100), Expect = 6e-06
 Identities = 26/182 (14%), Positives = 63/182 (34%), Gaps = 19/182 (10%)

Query: 12  GPLVVDALRPVTDLPL---------DVHLMIVEPEQRVPDFIKAGADIVSVHCEQ--SST 60
               + A++   DLP+            + I    + V + I++  +++++         
Sbjct: 44  TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPK 103

Query: 61  IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
             L   ++ I+       ++ + AT   A        D   I +   G+   +  +   +
Sbjct: 104 ETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDY--IGTTLHGYTSYTQGQLLYQ 161

Query: 121 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAV----FGAKDYAEA 175
                 +  L+      I  +G V  P    +V++ G +  V G A+       K + + 
Sbjct: 162 NDFQFLKDVLQSVDAKVI-AEGNVITPDMYKRVMDLGVHCSVVGGAITRPKEITKRFVQV 220

Query: 176 IK 177
           ++
Sbjct: 221 ME 222

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} Length = 206

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

 Score = 42.1 bits (98), Expect = 9e-06
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 89  AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 148
           A+E      D +   SV P    +      ++ +  +          P +   GG+   N
Sbjct: 112 ALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV----KIPVV-AIGGINKDN 166

Query: 149 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
           A +V++ G + +   SAV GA+D  +A + ++
Sbjct: 167 AREVLKTGVDGIAVISAVMGAEDVRKATEELR 198

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} Length = 202

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 31/195 (15%), Positives = 64/195 (32%), Gaps = 23/195 (11%)

Query: 4   RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ----SS 59
           + V  +      V+  +       +  + ++E    VPD      ++  +  +     + 
Sbjct: 10  KIVAVLRANS--VEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAG 67

Query: 60  TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP-------GFGGQ 112
           T+       +  + GA+  V  +    +S       V  +  +M+          G    
Sbjct: 68  TVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTIL 127

Query: 113 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG---- 168
                +V     ++ M        ++   GGV   N  +  +AG  A+  GSA+      
Sbjct: 128 KLFPGEVVGPQFVKAMKGPFPNVKFVPT-GGVNLDNVCEWFKAGVLAVGVGSALVKGTPD 186

Query: 169 -----AKDYAEAIKG 178
                AK + E I+G
Sbjct: 187 EVREKAKAFVEKIRG 201

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 212

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 11/176 (6%)

Query: 12  GPLVVDALRPVTDLPLDVHLMIVE----PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTL 67
           G  ++   R      +     + +     E+      KAGAD + VH          R  
Sbjct: 42  GMDIIAEFRKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHG--FPGADSVRAC 99

Query: 68  NQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 127
             + +   +   +L   +   A   +    D +  M V+ G        ++ +++S LR 
Sbjct: 100 LNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLRE 159

Query: 128 MCLEKGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
           +           +  GVG +          A+A++ G +++ A + A A  GI  S
Sbjct: 160 II----GQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIES 211

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} Length = 226

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 26/132 (19%), Positives = 58/132 (43%)

Query: 49  DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG 108
           D+      ++  IH+ +     K++ A  G ++   ++ +  E      D    + + P 
Sbjct: 85  DVELALNLKADGIHIGQEDANAKEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPI 144

Query: 109 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 168
           +  ++  +++  +   L      +G++  I   GG+   NA  VI+AGA+ +   SA+  
Sbjct: 145 YPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQ 204

Query: 169 AKDYAEAIKGIK 180
           A+D   A +  +
Sbjct: 205 AEDPESAARKFR 216

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 224

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 98  DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-AYKVIEAG 156
           D V +        G    +++ + I++   +  +      +    G+       K IE G
Sbjct: 138 DYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELG 197

Query: 157 ANALVAGSAVFGAKDYAEAIKGIKTS 182
              ++  S V  AKD  +AI  + + 
Sbjct: 198 TVGVLLASGVTKAKDPEKAIWDLVSG 223

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	100.0
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	100.0
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	100.0
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	100.0
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	100.0
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	99.95
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.71
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.71
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	99.7
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	99.69
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	99.67
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	99.66
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.6
d1dbta_	237	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.47
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	99.43
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	99.28
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	99.18
d1vqta1	198	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.14
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	99.14
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	99.02
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.96
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	98.95
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	98.94
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	98.92
d1dqwa_	267	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.92
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	98.91
d2ffca1	332	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.63
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	98.54
d2fdsa1	324	Protozoan orotidine monophosphate decarboxylase {P	98.52
d2q8za1	323	Protozoan orotidine monophosphate decarboxylase {P	98.52
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	98.46
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	98.44
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	98.4
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	98.22
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	98.21
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	98.16
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	98.13
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	98.13
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	98.07
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	98.07
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	97.95
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	97.95
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	97.87
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	97.8
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	97.77
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	97.76
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	97.75
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	97.72
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	97.7
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	97.69
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	97.68
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	97.67
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	97.67
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	97.62
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	97.59
d1m5wa_	242	Pyridoxine 5'-phosphate synthase {Escherichia coli	97.57
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	97.56
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	97.55
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	97.53
d1m6ja_	260	Triosephosphate isomerase {Entamoeba histolytica [	97.53
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	97.5
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	97.49
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	97.47
d1trea_	255	Triosephosphate isomerase {Escherichia coli [TaxId	97.43
d1izca_	299	Macrophomate synthase {Macrophoma commelinae [TaxI	97.38
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	97.29
d1n55a_	249	Triosephosphate isomerase {Leishmania mexicana [Ta	97.27
d2btma_	251	Triosephosphate isomerase {Bacillus stearothermoph	97.26
d1piia1	198	N-(5'phosphoribosyl)antranilate isomerase, PRAI {E	97.18
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	97.04
d1aw1a_	255	Triosephosphate isomerase {Vibrio marinus [TaxId:	96.97
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	96.89
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	96.88
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	96.87
d1kv5a_	249	Triosephosphate isomerase {Trypanosoma brucei [Tax	96.85
d1r2ra_	246	Triosephosphate isomerase {Rabbit (Oryctolagus cun	96.79
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	96.75
d1dxea_	253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	96.64
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	96.56
d1o5xa_	246	Triosephosphate isomerase {Plasmodium falciparum [	96.43
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	96.41
d1b9ba_	252	Triosephosphate isomerase {Thermotoga maritima [Ta	96.41
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	96.34
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	96.34
d1nsja_	205	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	96.25
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	96.17
d1mo0a_	257	Triosephosphate isomerase {Nematode (Caenorhabditi	96.16
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	96.09
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	95.95
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	95.92
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	95.87
d1r30a_	312	Biotin synthase {Escherichia coli [TaxId: 562]}	95.78
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	95.7
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	95.68
d1v5xa_	200	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	95.64
d1neya_	247	Triosephosphate isomerase {Baker's yeast (Saccharo	95.5
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	95.48
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	95.41
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	95.29
d1pkla2	258	Pyruvate kinase, N-terminal domain {Leishmania mex	94.89
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	94.73
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	94.32
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	93.87
d1a3xa2	265	Pyruvate kinase, N-terminal domain {Baker's yeast	93.55
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	93.52
d1m5wa_	242	Pyridoxine 5'-phosphate synthase {Escherichia coli	92.14
d1vpxa_	218	Decameric fructose-6-phosphate aldolase/transaldol	92.12
d1ytda1	270	Nicotinate phosphoribosyltransferase Ta1145 {Therm	92.06
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	91.98
d2g50a2	282	Pyruvate kinase, N-terminal domain {Rabbit (Orycto	91.5
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	90.98
d1e0ta2	246	Pyruvate kinase, N-terminal domain {Escherichia co	90.77
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	88.05
d2i14a1	279	Nicotinate-nucleotide pyrophosphorylase PF1904 {Py	87.61
d1wx0a1	211	Decameric fructose-6-phosphate aldolase/transaldol	86.86
d1l6wa_	220	Decameric fructose-6-phosphate aldolase/transaldol	86.49
d1ccwa_	137	Glutamate mutase, small subunit {Clostridium cochl	84.27
d1oyaa_	399	Old yellow enzyme (OYE) {Lager yeast (Saccharomyce	83.42
d2f7fa1	345	Putative nicotinate phosphoribosyltransferase EF26	82.79

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=0  Score=323.30  Aligned_cols=185  Identities=91%  Similarity=1.380  Sum_probs=177.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             98644686777988898703479993788881129588999998749999999113788521999999999809949999
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus         1 mDg~fv~n~~~g~~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~   80 (190)
                      |||+||||++||+..++++|+.+++++|+|||+.+|..|++.+.++|+|.+++|.|+....++.++++.+|++|+++|++
T Consensus        45 mDG~Fvpn~t~~~~~v~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gia  124 (230)
T d1rpxa_          45 MDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVV  124 (230)
T ss_dssp             EBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             46971776552857876655335750645333220666678875325622577322235305999999999869859999


Q ss_pred             ECCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEE
Q ss_conf             73899988899743113657997330688875332245899999999876329998089827889115899998099799
Q 029661           81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        81 i~~~t~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~i  160 (190)
                      ++|.||++.+.+|++.+|+|++||++||++||+|.+.+++||+++++++.+++.++.|+||||||.+|++++.++|||.+
T Consensus       125 lnp~T~~~~l~~~l~~vD~VllM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~~i~~l~~~Gad~~  204 (230)
T d1rpxa_         125 LNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANAL  204 (230)
T ss_dssp             ECTTCCGGGGTTTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEE
T ss_pred             ECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             67999879999999657989998736886420013566899999877777537734899987768999999997699999


Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             9864256988999999999971031
Q 029661          161 VAGSAVFGAKDYAEAIKGIKTSKRP  185 (190)
Q Consensus       161 VvGsai~~~~d~~~~~~~l~~~~~~  185 (190)
                      |+||+||+++||.+++++||++.++
T Consensus       205 V~GS~if~~~d~~~~i~~lk~~~~~  229 (230)
T d1rpxa_         205 VAGSAVFGAPDYAEAIKGIKTSKRP  229 (230)
T ss_dssp             EESHHHHTSSCHHHHHHHHHTCCCC
T ss_pred             EECHHHHCCCCHHHHHHHHHHHCCC
T ss_conf             9886987899999999999974489

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=100.00  E-value=0  Score=318.41  Aligned_cols=185  Identities=69%  Similarity=1.116  Sum_probs=178.0

Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             98644686777988898703479993788881129588999998749999999113788521999999999809949999
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus         1 mDg~fv~n~~~g~~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~   80 (190)
                      ||||||||++||+..++++++.+++++|+|||+.+|..|++.++++|++.+++|.|+....++.+.++.+++.|+++|++
T Consensus        37 mDG~Fvpn~t~~~~~~~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gia  116 (221)
T d1tqja_          37 MDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAV  116 (221)
T ss_dssp             EBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             26974676564827677665316762334678708889899874314527998622456736689999999779977999


Q ss_pred             ECCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEE
Q ss_conf             73899988899743113657997330688875332245899999999876329998089827889115899998099799
Q 029661           81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        81 i~~~t~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~i  160 (190)
                      ++|+||++.+.+|++.+|+|++|+++||++||+|.+.+++|++++++++.+++.++.|+||||||.+|++++.++|||.+
T Consensus       117 l~p~T~~~~l~~~l~~~d~vlvM~V~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~  196 (221)
T d1tqja_         117 LNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAI  196 (221)
T ss_dssp             ECTTCCGGGGTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEE
T ss_pred             ECCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             64898688999997331189999864788874220015799999886542036533799977768898999998699999


Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             9864256988999999999971031
Q 029661          161 VAGSAVFGAKDYAEAIKGIKTSKRP  185 (190)
Q Consensus       161 VvGsai~~~~d~~~~~~~l~~~~~~  185 (190)
                      |+||+||+++||++++++||++.+|
T Consensus       197 V~GS~if~~~d~~~~i~~lr~~~~~  221 (221)
T d1tqja_         197 VAGSAVFNAPNYAEAIAGVRNSKRP  221 (221)
T ss_dssp             EESHHHHTSSCHHHHHHHHHTCCC-
T ss_pred             EECHHHHCCCCHHHHHHHHHHCCCC
T ss_conf             9895886899999999999850598

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=100.00  E-value=0  Score=316.70  Aligned_cols=182  Identities=49%  Similarity=0.772  Sum_probs=176.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             98644686777988898703479993788881129588999998749999999113788521999999999809949999
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus         1 mDg~fv~n~~~g~~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~   80 (190)
                      ||||||||++||++.++++++.++.++|+|||+.||..|++.+.++|+|.+++|+|+  ..++.++++.+++.|+++|++
T Consensus        36 mDg~Fvpn~s~g~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~~H~E~--~~~~~~~i~~i~~~g~~~Gia  113 (217)
T d2flia1          36 MDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTES--TRHIHGALQKIKAAGMKAGVV  113 (217)
T ss_dssp             EBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGG--CSCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCHHHHHHHHHHCCCEEEEE
T ss_conf             159487755628899999874678725767773598898999997099679950434--457788999998659738999


Q ss_pred             ECCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEE
Q ss_conf             73899988899743113657997330688875332245899999999876329998089827889115899998099799
Q 029661           81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        81 i~~~t~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~i  160 (190)
                      ++|+||++.+.++++.+|+|++|+++||++||+|.+.+++|++++++++.+++.++.|+||||||.+|+++++++|||.+
T Consensus       114 l~p~T~~~~~~~~l~~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn~~~i~~l~~aGad~~  193 (217)
T d2flia1         114 INPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVF  193 (217)
T ss_dssp             ECTTSCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEE
T ss_pred             ECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             63776554777687640878999976765544210024788988888887509974899927878888999998799999


Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             986425698899999999997103
Q 029661          161 VAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       161 VvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      |+||+||+++|+.+++++||+.++
T Consensus       194 V~Gsaif~~~d~~~~i~~lr~~in  217 (217)
T d2flia1         194 VAGSYLFKASDLVSQVQTLRTALN  217 (217)
T ss_dssp             EESHHHHTSSCHHHHHHHHHHHHC
T ss_pred             EECHHHHCCCCHHHHHHHHHHHHC
T ss_conf             974488579999999999998639

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=100.00  E-value=0  Score=296.97  Aligned_cols=179  Identities=41%  Similarity=0.668  Sum_probs=168.0

Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             98644686777988898703479993788881129588999998749999999113788521999999999809949999
Q 029661            1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus         1 mDg~fv~n~~~g~~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~   80 (190)
                      |||+||||++||++.++++|+.++.++|+|||+.+|..+++.+.++|++.+++|.|+. ..++.++++.+++.|+++|++
T Consensus        36 mDg~Fvpn~t~~~~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~g~~~I~~H~E~~-~~~~~~~i~~i~~~g~~~Gla  114 (220)
T d1h1ya_          36 MDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVS-RDNWQELIQSIKAKGMRPGVS  114 (220)
T ss_dssp             EBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGGC-TTTHHHHHHHHHHTTCEEEEE
T ss_pred             ECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHHHHCCCCCCEE
T ss_conf             0694466545583666566542450134388751054555776530234156400101-012889999999749772324


Q ss_pred             ECCCCCHHHHHHHHC---CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCC
Q ss_conf             738999888997431---13657997330688875332245899999999876329998089827889115899998099
Q 029661           81 LNPATSLSAIECVLD---VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGA  157 (190)
Q Consensus        81 i~~~t~~~~~~~~~~---~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGa  157 (190)
                      ++|+||++.+.+++.   .+|++++|+++||++||+|.+.+++|++++|+..    .++.|+||||||.+|++.+.++||
T Consensus       115 l~p~t~~~~~~~~l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~----~~~~I~VDGGIn~~~i~~l~~aGa  190 (220)
T d1h1ya_         115 LRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY----PSLDIEVDGGLGPSTIDVAASAGA  190 (220)
T ss_dssp             ECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC----TTSEEEEESSCSTTTHHHHHHHTC
T ss_pred             ECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCC----CCCEEEEEECCCHHHHHHHHHCCC
T ss_conf             2134215678777742356656888714799864443004667999998628----976299992579999999998799


Q ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             799986425698899999999997103
Q 029661          158 NALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       158 d~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      |.+|+||+||+++||.+++++||+.++
T Consensus       191 d~~V~GS~if~~~d~~~~i~~lr~~~~  217 (220)
T d1h1ya_         191 NCIVAGSSIFGAAEPGEVISALRKSVE  217 (220)
T ss_dssp             CEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred             CEEEECHHHHCCCCHHHHHHHHHHHHH
T ss_conf             999978799789999999999999998

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=0  Score=295.31  Aligned_cols=180  Identities=33%  Similarity=0.541  Sum_probs=166.1

Q ss_pred             CCCCCCCCCCCCHHHHHHHCCC-CCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf             9864468677798889870347-999378888112958899999874999999911378852199999999980994999
Q 029661            1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV   79 (190)
Q Consensus         1 mDg~fv~n~~~g~~~i~~i~~~-~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl   79 (190)
                      |||+||||++||+..++++|+. ++.++|+|||+.+|..|++.+.++|++.+++|.+.....++.+.++.+++.|+++|+
T Consensus        37 mDG~Fvpn~t~g~~~v~~i~~~~~~~~~dvHLMv~~P~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~~g~~~Gi  116 (221)
T d1tqxa_          37 MDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGI  116 (221)
T ss_dssp             EBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTTSSEEEEEGGGGTTCHHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf             06947676460828872223117746666567755314442566515852688512215420036778988755973777


Q ss_pred             EECCCCCHHHHHHHHC--CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCC
Q ss_conf             9738999888997431--13657997330688875332245899999999876329998089827889115899998099
Q 029661           80 VLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGA  157 (190)
Q Consensus        80 ~i~~~t~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGa  157 (190)
                      +++|.||++.+.++++  .+|+|++|+++||++||+|.+.+++||+++|++.    .++.|+||||||.+|++.+.++||
T Consensus       117 al~p~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~----~~~~I~VDGGIn~~~i~~l~~aGa  192 (221)
T d1tqxa_         117 SIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY----KNLNIQVDGGLNIETTEISASHGA  192 (221)
T ss_dssp             EECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC----TTCEEEEESSCCHHHHHHHHHHTC
T ss_pred             EECCCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHC----CCCCEEEECCCCHHHHHHHHHCCC
T ss_conf             5125655111020100044568999863134543124751267888998736----784348973668876999997699


Q ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             799986425698899999999997103
Q 029661          158 NALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       158 d~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      |.+|+||+||+++||.+++++||+.++
T Consensus       193 d~iV~GS~if~~~d~~~~i~~Lr~~i~  219 (221)
T d1tqxa_         193 NIIVAGTSIFNAEDPKYVIDTMRVSVQ  219 (221)
T ss_dssp             CEEEESHHHHTCSSHHHHHHHHHHHHH
T ss_pred             CEEEECHHHHCCCCHHHHHHHHHHHHH
T ss_conf             999978598789999999999999996

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=9.6e-28  Score=173.57  Aligned_cols=177  Identities=17%  Similarity=0.165  Sum_probs=153.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHCCC-CCCCEEEEEEECCHHH-HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             9864468677798889870347-9993788881129588-9999987499999991137885219999999998099499
Q 029661            1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQ-RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAG   78 (190)
Q Consensus         1 mDg~fv~n~~~g~~~i~~i~~~-~~~~i~vhlmv~~p~~-~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~g   78 (190)
                      ++.+|.+++++|++.++.|++. ++.++.+|+|..|+.. +.+.+.++|+|++++|.+.+ .+.+.+.++.++++|.+.+
T Consensus        30 ikig~~~~~~~G~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~gad~vtvh~~~g-~~~~~~~~~~~~~~~~~~~  108 (213)
T d1q6oa_          30 IEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCAD-INTAKGALDVAKEFNGDVQ  108 (213)
T ss_dssp             EEECHHHHHHHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC-HHHHHHHHHHHHHTTCEEE
T ss_pred             EEECEECCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHHHHCCCCEE
T ss_conf             994701400589899999998545556046776145157888999980999999803578-1689999999997198201


Q ss_pred             EEECCCCCHHHHHHHHCC-CCE-EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCC
Q ss_conf             997389998889974311-365-799733068887533224589999999987632999808982788911589999809
Q 029661           79 VVLNPATSLSAIECVLDV-VDL-VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG  156 (190)
Q Consensus        79 l~i~~~t~~~~~~~~~~~-~d~-vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aG  156 (190)
                      +.+.+.++.+...++... ++. ++.++.++|+.+|.+.+..++++++.+.      .++.+.+|||++.+|++++.++|
T Consensus       109 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~------~~~~i~~~gGi~~~~~~~~~~~G  182 (213)
T d1q6oa_         109 IELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSD------MGFKVTVTGGLALEDLPLFKGIP  182 (213)
T ss_dssp             EEECSCCCHHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHH------TTCEEEEESSCCGGGGGGGTTSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHC------CCCEEECCCCCCCCCHHHHHHCC
T ss_conf             265899999999999986788989887024685886577889999998625------58618338886858999999869


Q ss_pred             CCEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9799986425698899999999997103
Q 029661          157 ANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       157 ad~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      +|++|+||+||+++||.++++++++.++
T Consensus       183 ad~iVVGr~I~~a~dp~~a~~~~~~~i~  210 (213)
T d1q6oa_         183 IHVFIAGRSIRDAASPVEAARQFKRSIA  210 (213)
T ss_dssp             CSEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred             CCEEEECHHHCCCCCHHHHHHHHHHHHH
T ss_conf             9999988242689999999999999999

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=9e-18  Score=117.19  Aligned_cols=164  Identities=23%  Similarity=0.261  Sum_probs=110.3

Q ss_pred             CCCCHHHHHHHCCCCCCCEEEEEEECCHH----HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEE-ECC
Q ss_conf             77798889870347999378888112958----8999998749999999113788521999999999809949999-738
Q 029661            9 ITIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNP   83 (190)
Q Consensus         9 ~~~g~~~i~~i~~~~~~~i~vhlmv~~p~----~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~-i~~   83 (190)
                      ..+|++.++++++.+++++.+|++..|..    .+++.++++|+|++|+|..++     .+.++.+++.+....+. ++.
T Consensus        36 ~~~G~~~i~~l~~~~~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~~~g-----~~~i~~~~~~~~~~~~~~~s~  110 (206)
T d2czda1          36 LGSGVDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVG-----RDSVMAVKELGEIIMVVEMSH  110 (206)
T ss_dssp             HHHCTTHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTC-----HHHHHHHHTTSEEEEECCCCS
T ss_pred             HHCCHHHHHHHHHHCCCEEEEEEEEEEECCCCHHEEHHHCCCCCCEEEEEECCC-----HHHHHHHHHCCCCEEEEECCC
T ss_conf             634988999999855982897754533046310000111154441787640033-----888877652266447873157


Q ss_pred             CCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC--CCCHHHHHHCCCCEEE
Q ss_conf             99988899743113657997330688875332245899999999876329998089827889--1158999980997999
Q 029661           84 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALV  161 (190)
Q Consensus        84 ~t~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~~~~~~~~~aGad~iV  161 (190)
                      .++.+...+   ..+.+..++.+++..|+.......+.+..+|+..+   .++.+ +.+||+  ..+..+++++|+|++|
T Consensus       111 ~~~~~~~~~---~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~r~~~~---~~~~i-~~pGI~~~~~~~~~ai~~Gad~iV  183 (206)
T d2czda1         111 PGALEFINP---LTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLK---EGIKI-LAPGIGAQGGKAKDAVKAGADYII  183 (206)
T ss_dssp             GGGGTTTGG---GHHHHHHHHHHHCCSEEECCCSSTHHHHHHHHHSC---TTCEE-EECCCCSSTTHHHHHHHHTCSEEE
T ss_pred             CCCCCCCCH---HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC---CCCEE-ECCCCCCCCCCHHHHHHHCCCEEE
T ss_conf             764210147---99999999974233455444457136666665422---56537-778713468999999980999999


Q ss_pred             ECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             86425698899999999997103
Q 029661          162 AGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       162 vGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      +||+|++++||.+++++++++++
T Consensus       184 vGR~I~~a~dP~~aa~~i~~~ik  206 (206)
T d2czda1         184 VGRAIYNAPNPREAAKAIYDEIR  206 (206)
T ss_dssp             ECHHHHTSSSHHHHHHHHHHHHC
T ss_pred             ECHHHCCCCCHHHHHHHHHHHHC
T ss_conf             89466158999999999999719

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=8.7e-18  Score=117.28  Aligned_cols=167  Identities=19%  Similarity=0.221  Sum_probs=123.2

Q ss_pred             CCCCHHHHHHHCCCCCCCEEEEEEECCHH----HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             77798889870347999378888112958----89999987499999991137885219999999998099499997389
Q 029661            9 ITIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA   84 (190)
Q Consensus         9 ~~~g~~~i~~i~~~~~~~i~vhlmv~~p~----~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~   84 (190)
                      ..+|+..++++++..+.++-+|++..|..    .+++.++++|+|++|+|..++ .+.+..+++.+++.+..+.+....+
T Consensus        39 ~~~G~~~v~~l~~~~~~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g-~~~i~~~~~~a~~~~~~~~~l~~~s  117 (212)
T d1km4a_          39 LSEGMDIIAEFRKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPG-ADSVRACLNVAEEMGREVFLLTEMS  117 (212)
T ss_dssp             HHHCTHHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTC-HHHHHHHHHHHHHHTCEEEEECSCS
T ss_pred             HHCCHHHHHHHHHHCCCCEEHHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCCC-HHHHHHHHHHHHHCCCCCCCCHHHC
T ss_conf             762999999998746642653335602443888767643034554787741189-6889999999984197432220001


Q ss_pred             CCH-HHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CHHHHHHCCCCEEE
Q ss_conf             998-889974311365799733068887533224589999999987632999808982788911--58999980997999
Q 029661           85 TSL-SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK--NAYKVIEAGANALV  161 (190)
Q Consensus        85 t~~-~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~--~~~~~~~aGad~iV  161 (190)
                      .+- +.+.+  ...+.+..++++.|.+|+.......+.++++|+..++   ++ +.+.+||+++  +..+. ..++|++|
T Consensus       118 ~~~~~~~~~--~~~~~~~~~~~~~g~~g~v~~~~~~~~i~~ir~~~~~---~~-~~vtpGI~~~g~~~~d~-~~~ad~iI  190 (212)
T d1km4a_         118 HPGAEMFIQ--GAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQ---DS-FLISPGVGAQGGDPGET-LRFADAII  190 (212)
T ss_dssp             SGGGGTTHH--HHHHHHHHHHHHHTCCEEECCTTCHHHHHHHHHHHCS---SS-EEEECCBSTTSBCHHHH-TTTCSEEE
T ss_pred             CHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC---CE-EEECCCCCCCCCCHHHH-HHHCCEEE
T ss_conf             204554332--4789999999883876421345677777656540587---51-68767633588998899-73199999


Q ss_pred             ECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             8642569889999999999710
Q 029661          162 AGSAVFGAKDYAEAIKGIKTSK  183 (190)
Q Consensus       162 vGsai~~~~d~~~~~~~l~~~~  183 (190)
                      +||+|++++||.++++++++++
T Consensus       191 vGR~I~~a~dP~~aa~~i~~~i  212 (212)
T d1km4a_         191 VGRSIYLADNPAAAAAGIIESI  212 (212)
T ss_dssp             ECHHHHTSSSHHHHHHHHHHHC
T ss_pred             ECCHHCCCCCHHHHHHHHHHHC
T ss_conf             8902044989999999999739

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.70  E-value=1.2e-15  Score=105.21  Aligned_cols=147  Identities=20%  Similarity=0.329  Sum_probs=116.5

Q ss_pred             CHHHHHHHCCCCCCCEEEEEEEC-CH------HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             98889870347999378888112-95------889999987499999991137885219999999998099499997389
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA   84 (190)
Q Consensus        12 g~~~i~~i~~~~~~~i~vhlmv~-~p------~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~   84 (190)
                      -.+.++++|+.++.|+..  |+. ||      .++++.+.++|+|+++++--  +.++..++.+.++++|......++|+
T Consensus        68 ~~~~~~~~r~~~~~pivl--m~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDL--P~eE~~~~~~~~~~~gl~~I~lvaPt  143 (248)
T d1geqa_          68 AFWIVKEFRRHSSTPIVL--MTYYNPIYRAGVRNFLAEAKASGVDGILVVDL--PVFHAKEFTEIAREEGIKTVFLAAPN  143 (248)
T ss_dssp             HHHHHHHHHTTCCCCEEE--EECHHHHHHHCHHHHHHHHHHHTCCEEEETTC--CGGGHHHHHHHHHHHTCEEEEEECTT
T ss_pred             HHHHHHHHHHCCCCCEEE--EECCCCCCCCCHHHHHHHHCCCCEEEEECCCC--CHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             999999986168986799--85034333367778865410167268753678--47788898765024685268886453


Q ss_pred             CCHHHHHHHHCCC-CEEEEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEE
Q ss_conf             9988899743113-65799733068887--5332245899999999876329998089827889-115899998099799
Q 029661           85 TSLSAIECVLDVV-DLVLIMSVNPGFGG--QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        85 t~~~~~~~~~~~~-d~vl~m~v~pG~~g--q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~i  160 (190)
                      |+.++++.+.... .+|.+.++ +|.+|  ..+.....+.++++|+..     +.++.|++||+ +++++++.++|||++
T Consensus       144 t~~~ri~~i~~~s~gFiY~vs~-~GvTG~~~~~~~~~~~~v~~vk~~t-----~~Pv~vGFGI~~~e~v~~~~~~~ADGv  217 (248)
T d1geqa_         144 TPDERLKVIDDMTTGFVYLVSL-YGTTGAREEIPKTAYDLLRRAKRIC-----RNKVAVGFGVSKREHVVSLLKEGANGV  217 (248)
T ss_dssp             CCHHHHHHHHHHCSSEEEEECC-C-------CCCHHHHHHHHHHHHHC-----SSCEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred             CHHHHHHHHHHCCCCEEEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHC-----CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             4157889888538872899841-4665420113356778888876503-----641466136499999999986599999


Q ss_pred             EECCCCCC
Q ss_conf             98642569
Q 029661          161 VAGSAVFG  168 (190)
Q Consensus       161 VvGsai~~  168 (190)
                      |+||++.+
T Consensus       218 IVGSaiv~  225 (248)
T d1geqa_         218 VVGSALVK  225 (248)
T ss_dssp             EECHHHHH
T ss_pred             EECHHHHH
T ss_conf             98889999

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.69  E-value=7.7e-16  Score=106.26  Aligned_cols=164  Identities=16%  Similarity=0.245  Sum_probs=124.5

Q ss_pred             CHHHHHHHCCCCCCCEEEEEEEC-CHH--HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf             98889870347999378888112-958--899999874999999911378852199999999980994999973899988
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIV-EPE--QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS   88 (190)
Q Consensus        12 g~~~i~~i~~~~~~~i~vhlmv~-~p~--~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~   88 (190)
                      -.+.++.+|+..+.|+.+  |.. ||.  ..++.+.++|+|+++++-.  +.++..++.+.++++|+.....+.|+|+.+
T Consensus        81 ~~~~~~~~r~~~~~p~il--m~Y~n~~~~~~~~~~~~~GvdG~IipDl--p~eE~~~~~~~~~~~gl~~I~lvaPtt~~~  156 (261)
T d1rd5a_          81 VLEMLREVTPELSCPVVL--LSYYKPIMFRSLAKMKEAGVHGLIVPDL--PYVAAHSLWSEAKNNNLELVLLTTPAIPED  156 (261)
T ss_dssp             HHHHHHHHGGGCSSCEEE--ECCSHHHHSCCTHHHHHTTCCEEECTTC--BTTTHHHHHHHHHHTTCEECEEECTTSCHH
T ss_pred             HHHHHHCCCCCCCCCEEE--EEEECCHHHHHHHHHHHCCCEEEEECCC--CHHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf             666653025455675034--4212451267788887559205420576--077777888887434653698745677236


Q ss_pred             HHHHHHCC-CCEEEEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCC
Q ss_conf             89974311-36579973306888753-32245899999999876329998089827889-11589999809979998642
Q 029661           89 AIECVLDV-VDLVLIMSVNPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA  165 (190)
Q Consensus        89 ~~~~~~~~-~d~vl~m~v~pG~~gq~-~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsa  165 (190)
                      +++.+... -.+|.++++.+-+|.+. +.+...+.++++|+..     +.++.+++||+ +++++.+.++|||++|+||+
T Consensus       157 Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-----~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSa  231 (261)
T d1rd5a_         157 RMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT-----NKPVAVGFGISKPEHVKQIAQWGADGVIIGSA  231 (261)
T ss_dssp             HHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC-----SSCEEEESCCCSHHHHHHHHHTTCSEEEECHH
T ss_pred             HHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC-----CCCEEEECCCCCHHHHHHHHHCCCCEEEECHH
T ss_conf             7888885096453211113765322221157999998762036-----78769981779999999998659999998889


Q ss_pred             CCC----CCCHHHHHHHHHHHHC
Q ss_conf             569----8899999999997103
Q 029661          166 VFG----AKDYAEAIKGIKTSKR  184 (190)
Q Consensus       166 i~~----~~d~~~~~~~l~~~~~  184 (190)
                      +.+    +.++++.++.+.+.++
T Consensus       232 iv~~i~~~~~~~~~~~~~~~~~~  254 (261)
T d1rd5a_         232 MVRQLGEAASPKQGLRRLEEYAR  254 (261)
T ss_dssp             HHHHHHSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99999975787899999999999

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.67  E-value=1.2e-15  Score=105.21  Aligned_cols=162  Identities=13%  Similarity=0.121  Sum_probs=122.7

Q ss_pred             HHHHHHHCCC-CCCCEEEEEEEC-CH------HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             8889870347-999378888112-95------889999987499999991137885219999999998099499997389
Q 029661           13 PLVVDALRPV-TDLPLDVHLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA   84 (190)
Q Consensus        13 ~~~i~~i~~~-~~~~i~vhlmv~-~p------~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~   84 (190)
                      .+.++.+|+. .+.|+..  |+. ||      +++++.+.++|+|++.++..  +.++..+..+.++++|......+.|+
T Consensus        82 ~~~~~~~r~~~~~~pivl--m~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDl--P~ee~~~~~~~~~~~~l~~I~lvaPt  157 (267)
T d1qopa_          82 FEMLAIIREKHPTIPIGL--LMYANLVFNNGIDAFYARCEQVGVDSVLVADV--PVEESAPFRQAALRHNIAPIFICPPN  157 (267)
T ss_dssp             HHHHHHHHHHCSSSCEEE--EECHHHHHTTCHHHHHHHHHHHTCCEEEETTC--CGGGCHHHHHHHHHTTCEEECEECTT
T ss_pred             HHHHHHHCCCCCCCCEEE--EEECCCHHHCCCHHHHHHHHHCCCCCEECCCH--HHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             656544012346540688--85215220068157899998659772124540--34546788776512576089971556


Q ss_pred             CCHHHHHHHHCCC-CEEEEEEEECCCCCCC--CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEE
Q ss_conf             9988899743113-6579973306888753--32245899999999876329998089827889-115899998099799
Q 029661           85 TSLSAIECVLDVV-DLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL  160 (190)
Q Consensus        85 t~~~~~~~~~~~~-d~vl~m~v~pG~~gq~--~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~i  160 (190)
                      |+.++++.+.... .+|.++++. |.+|..  +.....+.++++|+..     +.++.|++||+ ++++.+..++|||++
T Consensus       158 t~~~Ri~~i~~~a~gFiY~vs~~-GvTG~~~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~v~~~~~~~ADGv  231 (267)
T d1qopa_         158 ADDDLLRQVASYGRGYTYLLSRS-GVTGAENRGALPLHHLIEKLKEYH-----AAPALQGFGISSPEQVSAAVRAGAAGA  231 (267)
T ss_dssp             CCHHHHHHHHHHCCSCEEEESSS-SCCCSSSCC--CCHHHHHHHHHTT-----CCCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             CCHHHHHHHHHHCCHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHC-----CCCCEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             62788888875073355651033-567753232124789998876523-----687312016599999999986489999


Q ss_pred             EECCCCCCC-----CCHHHHHHHHHHHHC
Q ss_conf             986425698-----899999999997103
Q 029661          161 VAGSAVFGA-----KDYAEAIKGIKTSKR  184 (190)
Q Consensus       161 VvGsai~~~-----~d~~~~~~~l~~~~~  184 (190)
                      |+||++.+.     +++++.++.+++.++
T Consensus       232 IVGSAivk~i~~~~~~~~~~~~~i~~~v~  260 (267)
T d1qopa_         232 ISGSAIVKIIEKNLASPKQMLAELRSFVS  260 (267)
T ss_dssp             EECHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             EECHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             98889999998624178999999999999

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=1.5e-15  Score=104.56  Aligned_cols=160  Identities=23%  Similarity=0.266  Sum_probs=123.9

Q ss_pred             HHHHHHHCCCCCCCEEEEEEEC-CH------HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             8889870347999378888112-95------8899999874999999911378852199999999980994999973899
Q 029661           13 PLVVDALRPVTDLPLDVHLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT   85 (190)
Q Consensus        13 ~~~i~~i~~~~~~~i~vhlmv~-~p------~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t   85 (190)
                      .+.++.+|+.++.|+..  |+. ||      +++++.+.++|+|+++++..  +.++..++.+.++++|+.....++|+|
T Consensus        80 ~~~~~~~r~~~~~pivl--m~Y~N~i~~~G~~~F~~~~~~aGvdGliipDL--P~ee~~~~~~~~~~~gl~~I~lvsPtT  155 (271)
T d1ujpa_          80 LELVREVRALTEKPLFL--MTYLNPVLAWGPERFFGLFKQAGATGVILPDL--PPDEDPGLVRLAQEIGLETVFLLAPTS  155 (271)
T ss_dssp             HHHHHHHHHHCCSCEEE--ECCHHHHHHHCHHHHHHHHHHHTCCEEECTTC--CGGGCHHHHHHHHHHTCEEECEECTTC
T ss_pred             HHHHHHHHCCCCCCEEE--EEECHHHHHCCCHHHHHHHHHCCCEEEECCCH--HHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf             89899875046776799--96200234178036767776349646742430--466678888776314645021037776


Q ss_pred             CHHHHHHHHCCC-CEEEEEEEECCCCCC--CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEE
Q ss_conf             988899743113-657997330688875--332245899999999876329998089827889-1158999980997999
Q 029661           86 SLSAIECVLDVV-DLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV  161 (190)
Q Consensus        86 ~~~~~~~~~~~~-d~vl~m~v~pG~~gq--~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iV  161 (190)
                      +.++++.+.... .+|.++++. |.+|.  .+.....+.++++|+.     .+.++.|++||+ +++++.+  ++||++|
T Consensus       156 ~~eRi~~i~~~s~GFIY~Vs~~-GvTG~~~~~~~~~~~~i~~ik~~-----t~~Pv~vGFGIs~~e~v~~~--~~ADGvI  227 (271)
T d1ujpa_         156 TDARIATVVRHATGFVYAVSVT-GVTGMRERLPEEVKDLVRRIKAR-----TALPVAVGFGVSGKATAAQA--AVADGVV  227 (271)
T ss_dssp             CHHHHHHHHTTCCSCEEEECC-------------CCHHHHHHHHTT-----CCSCEEEESCCCSHHHHHHH--TTSSEEE
T ss_pred             CHHHHHHHHHHCCCHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHCC-----CCCCEEEECCCCCHHHHHHH--CCCCEEE
T ss_conf             0689999998483121120356-76675433317799998765115-----66875874787988999873--7799899


Q ss_pred             ECCCCCC----CCCHHHHHHHHHHHHC
Q ss_conf             8642569----8899999999997103
Q 029661          162 AGSAVFG----AKDYAEAIKGIKTSKR  184 (190)
Q Consensus       162 vGsai~~----~~d~~~~~~~l~~~~~  184 (190)
                      |||++.+    ..+....++++++.++
T Consensus       228 VGSAiV~~i~e~~~~~~~~~~i~~~l~  254 (271)
T d1ujpa_         228 VGSALVRALEEGRSLAPLLQEIRQGLQ  254 (271)
T ss_dssp             ECHHHHHHHHTTCCHHHHHHHHHHHHB
T ss_pred             ECHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             868999999848989999999999999

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=6.5e-16  Score=106.68  Aligned_cols=166  Identities=18%  Similarity=0.231  Sum_probs=108.9

Q ss_pred             CCCHHHHHHHCCCCCCCEEEEEEECCHHH----HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCC--EEEEECC
Q ss_conf             77988898703479993788881129588----99999874999999911378852199999999980994--9999738
Q 029661           10 TIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK--AGVVLNP   83 (190)
Q Consensus        10 ~~g~~~i~~i~~~~~~~i~vhlmv~~p~~----~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~--~gl~i~~   83 (190)
                      .+|++.++.|++ .+.++-+|++..|...    .++.+.+.|+|++|+|...+ .+.+..+.+.+++.+..  ..+.+..
T Consensus        41 ~~G~~~i~~l~~-~~~~if~D~K~~DI~nt~~~~~~~~~~~~~~~~tvh~~~g-~~~l~~~~~~~~~~~~~~~~~~~v~~  118 (231)
T d1eixa_          41 LFGPQFVRELQQ-RGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGG-ARMMTAAREALVPFGKDAPLLIAVTV  118 (231)
T ss_dssp             HHHHHHHHHHHH-TTCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGGC-HHHHHHHHHTTGGGGGGCCEEEEECS
T ss_pred             HCCHHHHHHHHH-CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             448999999985-4825047667605857788888865316631799963672-88888998766403765427899753


Q ss_pred             CCC--HHHHHHHH-CC-C-CEEE---EEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC--------
Q ss_conf             999--88899743-11-3-6579---9733068887533224589999999987632999808982788911--------
Q 029661           84 ATS--LSAIECVL-DV-V-DLVL---IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK--------  147 (190)
Q Consensus        84 ~t~--~~~~~~~~-~~-~-d~vl---~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~--------  147 (190)
                      .++  .+.+.... .. . +.+.   .++...|.++-...+...   +.+++..+   .++ +.+.+||+++        
T Consensus       119 ~ts~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~-~~~tPGI~~~~~~~~dq~  191 (231)
T d1eixa_         119 LTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEA---VRFKQVFG---QEF-KLVTPGIRPQGSEAGDQR  191 (231)
T ss_dssp             CTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCGGGH---HHHHHHHC---SSS-EEEECCBCCTTCCCTTCC
T ss_pred             CCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHH---HHHHHHCC---CCC-CEECCCCCCCCCCCCCCC
T ss_conf             02122100000001354258999989898873212212210012---34443037---765-223688466888756752


Q ss_pred             ---CHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             ---5899998099799986425698899999999997103
Q 029661          148 ---NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       148 ---~~~~~~~aGad~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                         |..+++++|+|++||||+|++++||.+++++++++++
T Consensus       192 r~~tp~~Ai~~GaD~iIVGR~It~a~dP~~aa~~i~~~ik  231 (231)
T d1eixa_         192 RIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ  231 (231)
T ss_dssp             SCBCHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
T ss_conf             0179999998699999989733589999999999999739

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.47  E-value=4.5e-14  Score=96.28  Aligned_cols=167  Identities=20%  Similarity=0.277  Sum_probs=106.0

Q ss_pred             CCCCHHHHHHHCCCCCCCEEEEEEECCHHH----HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHC----CCEE-E
Q ss_conf             777988898703479993788881129588----999998749999999113788521999999999809----9499-9
Q 029661            9 ITIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG----AKAG-V   79 (190)
Q Consensus         9 ~~~g~~~i~~i~~~~~~~i~vhlmv~~p~~----~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g----~~~g-l   79 (190)
                      ..+|++.+++|++. +.++-.|++..|..+    .+..+.+.|+|++|+|.-.+ ...+.+..+.+++..    .... +
T Consensus        40 ~~~G~~~i~~l~~~-~~~IflD~K~~DIgnTv~~~~~~~~~~~~d~vtvh~~~G-~~~i~aa~~~~~~~~~~~~~~~~l~  117 (237)
T d1dbta_          40 YQEGPSIVKQLKER-NCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGG-KKMMQAALEGLEEGTPAGKKRPSLI  117 (237)
T ss_dssp             HHHTHHHHHHHHHT-TCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGC-HHHHHHHHHHHHHHSCTTSCCCEEE
T ss_pred             HHCCHHHHHHHHHC-CHHEEHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHHHHCCHHCCCCCEEE
T ss_conf             51597999998750-521021014335753788888765323655677514554-5899999986542010025665068


Q ss_pred             EEC--CCCCHHHHHHHHCC----CCEEEEEE---EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC---
Q ss_conf             973--89998889974311----36579973---3068887533224589999999987632999808982788911---
Q 029661           80 VLN--PATSLSAIECVLDV----VDLVLIMS---VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK---  147 (190)
Q Consensus        80 ~i~--~~t~~~~~~~~~~~----~d~vl~m~---v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~---  147 (190)
                      .+.  .+..-+........    .+.+..+.   .+-|..|-...+..+..+   ++.   .+.++ +.+.+||+++   
T Consensus       118 ~v~~lts~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~g~v~s~~~~~~~---r~~---~~~~~-~ivtPGI~~~~~~  190 (237)
T d1dbta_         118 AVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVHEAKAI---YQA---VSPSF-LTVTPGIRMSEDA  190 (237)
T ss_dssp             EECSCTTCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEEECCGGGHHHH---TTT---SCTTC-EEEECCBCCTTSC
T ss_pred             EEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCHHHHHHH---CCC---CCCCE-EEECCCCCCCCCC
T ss_conf             8741466562889865432045212437988756642951442020344431---122---21303-5761364457777


Q ss_pred             --------CHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             --------5899998099799986425698899999999997103
Q 029661          148 --------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       148 --------~~~~~~~aGad~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                              |..+++++|+|++||||+|++++||.+++++++++++
T Consensus       191 ~~dq~r~~tp~~a~~~GaD~iIVGR~I~~s~dP~~aa~~i~~~ie  235 (237)
T d1dbta_         191 ANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWE  235 (237)
T ss_dssp             CTTCSSCBCHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred             CCCCEEECCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
T ss_conf             789663289999998699999989845589999999999999970

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=99.43  E-value=1.8e-12  Score=87.21  Aligned_cols=133  Identities=20%  Similarity=0.170  Sum_probs=95.9

Q ss_pred             HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH-HCCCCEEEEEEEECCCCCCCCCHH
Q ss_conf             9999987499999991137885219999999998099499997389998889974-311365799733068887533224
Q 029661           39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV-LDVVDLVLIMSVNPGFGGQSFIES  117 (190)
Q Consensus        39 ~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~~~~~~-~~~~d~vl~m~v~pG~~gq~~~~~  117 (190)
                      .++.+.+.|+|++++..+.   ...    ...+..+....+..+.. ..+.+... ...+||+.+..+.|+...+...+.
T Consensus        69 ~~~lA~~~~adGvHl~~~~---~~~----~~~~~~~~~~iig~s~h-~~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~  140 (206)
T d1xi3a_          69 RVDVALAVDADGVQLGPED---MPI----EVAKEIAPNLIIGASVY-SLEEALEAEKKGADYLGAGSVFPTKTKEDARVI  140 (206)
T ss_dssp             CHHHHHHHTCSEEEECTTS---CCH----HHHHHHCTTSEEEEEES-SHHHHHHHHHHTCSEEEEECSSCC----CCCCC
T ss_pred             HHHHHHHCCCCEEEECCCC---CCH----HHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
T ss_conf             3899975347667652233---427----66642266443001568-899999888669887985223345566545422


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             5899999999876329998089827889115899998099799986425698899999999997103
Q 029661          118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       118 ~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      .++.++++.+..     +.++.+-|||+.+++.++.++|++++.+.|+|++++||.++++++++.++
T Consensus       141 g~~~l~~~~~~~-----~~Pv~AiGGI~~~ni~~~~~~Ga~gvAvis~I~~~~dp~~~~~~l~~~~~  202 (206)
T d1xi3a_         141 GLEGLRKIVESV-----KIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVE  202 (206)
T ss_dssp             HHHHHHHHHHHC-----SSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHC-----CCCEEEECCCCHHHHHHHHHHCCCEEEEHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             379999988726-----89889977999999999998399899975997779999999999999999

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=99.28  E-value=9.5e-11  Score=77.50  Aligned_cols=174  Identities=15%  Similarity=0.113  Sum_probs=117.9

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCEEE-EE--E--ECCHHHH-HHHHHHCCCCEEEE-CCCCC-CCCHHHHHHHHHHHHCCC
Q ss_conf             4686777988898703479993788-88--1--1295889-99998749999999-11378-852199999999980994
Q 029661            5 FVPNITIGPLVVDALRPVTDLPLDV-HL--M--IVEPEQR-VPDFIKAGADIVSV-HCEQS-STIHLHRTLNQIKDLGAK   76 (190)
Q Consensus         5 fv~n~~~g~~~i~~i~~~~~~~i~v-hl--m--v~~p~~~-i~~~~~~Gad~i~v-h~e~~-~~~~~~~~i~~i~~~g~~   76 (190)
                      +.|++.+..    .+++.+++++-+ |+  .  -...+.. .+.+.+.|++++.+ |.|.- ...+..+.++.++++|++
T Consensus        41 iaP~~~~l~----~~~~~~~i~v~aQn~~~~~~ga~TG~is~~~l~~~g~~~viigHsErR~~~~e~~~~~~~~~~~gl~  116 (226)
T d1w0ma_          41 VAPNHLELG----LVSQSVDIPVYAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLD  116 (226)
T ss_dssp             EECCGGGHH----HHHTTCSSCBEESCCSBSSCSSCTTCCBHHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCE
T ss_pred             EECCHHHHH----HHHHCCCCEECCCCCCCCCCCCCCEEEEHHHHCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHCCCE
T ss_conf             969867678----8740463112156455202655210412766324444258850412233020168999999986998


Q ss_pred             EEEEECCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCHHHHHHC
Q ss_conf             9999738999888997431136579973306888753322458999999998763299980898278891-158999980
Q 029661           77 AGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEA  155 (190)
Q Consensus        77 ~gl~i~~~t~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-~~~~~~~~a  155 (190)
                      +.+.+.  ++.+.........+.+.+..+.+..+|+...+...+++.....+..+...+.++.++|||+. +....+.+.
T Consensus       117 ~ivcvg--e~~~~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~  194 (226)
T d1w0ma_         117 VVVCAP--DPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRL  194 (226)
T ss_dssp             EEEEES--SHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHT
T ss_pred             EEEECC--CHHHHHHHHCCCCCEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCC
T ss_conf             999558--417766410246513664353320378898804555766555431024788229994375776799997438


Q ss_pred             CCCEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             99799986425698899999999997103
Q 029661          156 GANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       156 Gad~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      |+|++.+||++++++||...+.++.+.+.
T Consensus       195 g~dGvLVGsA~l~a~d~~~~i~~l~~~~~  223 (226)
T d1w0ma_         195 GTRGVLLASAAVKAKDPYAKIVELAKPLS  223 (226)
T ss_dssp             TCSEEEECHHHHTCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEECHHEECCCCHHHHHHHHHHHHH
T ss_conf             99889961310068898999999999998

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.18  E-value=1.8e-10  Score=75.97  Aligned_cols=140  Identities=23%  Similarity=0.223  Sum_probs=91.1

Q ss_pred             EEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH-HHCCCCEEEEEEEECC
Q ss_conf             881129588999998749999999113788521999999999809949999738999888997-4311365799733068
Q 029661           30 HLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC-VLDVVDLVLIMSVNPG  108 (190)
Q Consensus        30 hlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~~~~~-~~~~~d~vl~m~v~pG  108 (190)
                      .|.+.|   .++.+.+.++|+|++....   ..+. ..+.... ....|....  + .+.... ....+||+.+-.+.|.
T Consensus        79 ~liInd---~~~lA~~~~adGvHl~~~d---~~~~-~~r~~~~-~~iig~S~h--~-~~e~~~a~~~g~DYi~~gpvf~T  147 (226)
T d2tpsa_          79 PFIVND---DVELALNLKADGIHIGQED---ANAK-EVRAAIG-DMILGVSAH--T-MSEVKQAEEDGADYVGLGPIYPT  147 (226)
T ss_dssp             CEEEES---CHHHHHHHTCSEEEECTTS---SCHH-HHHHHHT-TSEEEEEEC--S-HHHHHHHHHHTCSEEEECCSSCC
T ss_pred             EEEECC---CHHHHHHCCCCEEEECCCC---CHHH-HHHHCCC-CEEEEEECC--C-HHHHHHHHHCCCCEEEEECCCCC
T ss_conf             699828---9999964248789761311---1123-3100110-116642042--2-07999988576776988402114


Q ss_pred             CCCCCC-CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             887533-2245899999999876329998089827889115899998099799986425698899999999997103
Q 029661          109 FGGQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       109 ~~gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      ...... .+...+.++.++.    ...+.++.+-|||+++|+.++.++|++++.+.|+|++++||.++++++++.++
T Consensus       148 ~sK~~~~~~~~~~~~~~~~~----~~~~~Pv~AiGGI~~~ni~~l~~~Ga~giAvis~I~~a~dp~~~~~~~~~~~~  220 (226)
T d2tpsa_         148 ETKKDTRAVQGVSLIEAVRR----QGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQ  220 (226)
T ss_dssp             CSSSSCCCCCTTHHHHHHHH----TTCCCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHH----HCCCCCEEEECCCCHHHHHHHHHHCCCEEEEHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             54321112355303678887----44788889826899999999999499999973996669999999999999999

>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.14  E-value=3.2e-11  Score=80.13  Aligned_cols=150  Identities=16%  Similarity=0.092  Sum_probs=89.8

Q ss_pred             CCCCHHHHHHHCCCCCCCEEEEEEECCHHH----HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             777988898703479993788881129588----9999987499999991137885219999999998099499997389
Q 029661            9 ITIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA   84 (190)
Q Consensus         9 ~~~g~~~i~~i~~~~~~~i~vhlmv~~p~~----~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~   84 (190)
                      +..|++.+++|++. ++++-.||+..|..+    .++.+++.|+|++|+|...+ .+    .++.+.+...+-.+.+..-
T Consensus        32 ~~~G~~~i~~l~~~-~~~IflDlK~~DIpnTv~~~v~~~~~~g~d~itvH~~~G-~~----~l~~a~~~~~~~~l~Vt~L  105 (198)
T d1vqta1          32 AIHGKKIFDELAKR-NLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCAG-YE----SVERALSATDKHVFVVVKL  105 (198)
T ss_dssp             HTTCTHHHHHHHTT-TCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGGGC-HH----HHHHHHHHCSSEEEEECCC
T ss_pred             HHCCHHHHHHHHHC-CCCEEEEEHHCCCCHHHHHHHHHHHHCCCCEEEEECCCC-HH----HHHHHHHHCCCCCEEEEEE
T ss_conf             85149999999977-994998810137628999999998604663799974675-02----5667665112320257875


Q ss_pred             CC----HHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH---------HH
Q ss_conf             99----888997431136579973306888753322458999999998763299980898278891158---------99
Q 029661           85 TS----LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA---------YK  151 (190)
Q Consensus        85 t~----~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~---------~~  151 (190)
                      |+    .+.+.+.+..   .    .+.|.++-...+.    ..   .+...  ....+ +..||+++.-         ++
T Consensus       106 tS~~~~~~~~~~~~~~---l----~~~g~~~vv~~~~----~~---~~~~~--~~~~i-itPGIr~~~~~dDQkr~~t~~  168 (198)
T d1vqta1         106 TSMEGSLEDYMDRIEK---L----NKLGCDFVLPGPW----AK---ALREK--IKGKI-LVPGIRMEVKADDQKDVVTLE  168 (198)
T ss_dssp             TTSCCCHHHHHHHHHH---H----HHHTCEEECCHHH----HH---HHTTT--CCSCE-EECCBC---------CCBCHH
T ss_pred             ECCCCCHHHHHHHHHH---H----HHHCCCCCCCCCH----HH---HHHHH--CCCCC-CCCCCCCCCCCCCCCCCCCHH
T ss_conf             0345532788999999---9----9843475656614----55---55330--22220-054215577778805415899


Q ss_pred             HHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             998099799986425698899999999997
Q 029661          152 VIEAGANALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       152 ~~~aGad~iVvGsai~~~~d~~~~~~~l~~  181 (190)
                      .+++|||++|+||+|++++||.++++++++
T Consensus       169 ai~~GAd~iVVGR~It~s~dp~~~~~~i~e  198 (198)
T d1vqta1         169 EMKGIANFAVLGREIYLSENPREKIKRIKE  198 (198)
T ss_dssp             HHTTTCSEEEESHHHHTSSCHHHHHHHHTC
T ss_pred             HHHCCCCEEEECCCCCCCCCHHHHHHHHHC
T ss_conf             998499999989755689999999999759

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.14  E-value=1.7e-09  Score=70.43  Aligned_cols=165  Identities=16%  Similarity=0.189  Sum_probs=110.3

Q ss_pred             CHHHHHHHCCCCCCCEEEE---------EEECCHHHHHHHHHHCCCCEEEECCCCC--CCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             9888987034799937888---------8112958899999874999999911378--8521999999999809949999
Q 029661           12 GPLVVDALRPVTDLPLDVH---------LMIVEPEQRVPDFIKAGADIVSVHCEQS--STIHLHRTLNQIKDLGAKAGVV   80 (190)
Q Consensus        12 g~~~i~~i~~~~~~~i~vh---------lmv~~p~~~i~~~~~~Gad~i~vh~e~~--~~~~~~~~i~~i~~~g~~~gl~   80 (190)
                      +++.++.+|+..+.++-.-         ..........+...++|+|.+.+.....  ....+.+.++.+++++..+.+.
T Consensus        44 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  123 (222)
T d1y0ea_          44 TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIM  123 (222)
T ss_dssp             SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred             CHHHHHHHHHHCCCCCCEEECCCCCCHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             98999999985288630011357764677623239998867874998999651026652020999999999728852786


Q ss_pred             ECCCCCHHHHHHHHCCCCEEEEEEEECCCC--CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCC
Q ss_conf             738999888997431136579973306888--75332245899999999876329998089827889-115899998099
Q 029661           81 LNPATSLSAIECVLDVVDLVLIMSVNPGFG--GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGA  157 (190)
Q Consensus        81 i~~~t~~~~~~~~~~~~d~vl~m~v~pG~~--gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGa  157 (190)
                      ....|+.+........+|++.......+..  +.......++.++++++.     .+.++.++|||+ .+++.++.++||
T Consensus       124 ~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~iPVia~GGI~t~~d~~~~~~~GA  198 (222)
T d1y0ea_         124 ADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS-----VDAKVIAEGNVITPDMYKRVMDLGV  198 (222)
T ss_dssp             EECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH-----CCSEEEEESSCCSHHHHHHHHHTTC
T ss_pred             ECCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC-----CCCCEEEECCCCCHHHHHHHHHCCC
T ss_conf             06798999999997089868883467753466765116489999999735-----7885898689899999999998699


Q ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             799986425698899999999997103
Q 029661          158 NALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       158 d~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      |++++||+|.   +|.+..+++-+.++
T Consensus       199 dgV~iGsAi~---rp~~~~~~f~~~l~  222 (222)
T d1y0ea_         199 HCSVVGGAIT---RPKEITKRFVQVME  222 (222)
T ss_dssp             SEEEECHHHH---CHHHHHHHHHHTTC
T ss_pred             CEEEECHHHC---CHHHHHHHHHHHHC
T ss_conf             9999831116---99999999999759

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=99.02  E-value=4.5e-09  Score=68.03  Aligned_cols=138  Identities=21%  Similarity=0.250  Sum_probs=94.5

Q ss_pred             HHHHHHHCCCCEEEE-CCCCCC-CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEEEC----CCCCC
Q ss_conf             999998749999999-113788-521999999999809949999738999888997431136579973306----88875
Q 029661           39 RVPDFIKAGADIVSV-HCEQSS-TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP----GFGGQ  112 (190)
Q Consensus        39 ~i~~~~~~Gad~i~v-h~e~~~-~~~~~~~i~~i~~~g~~~gl~i~~~t~~~~~~~~~~~~d~vl~m~v~p----G~~gq  112 (190)
                      -.+.+.+.|++++.+ |.|--. ..+..+.++.+++.|+.+.+.+........+..+  ..+.+   +.+|    |. |.
T Consensus        79 s~~~l~~~g~~~~iiGHSErr~~~~e~~~~i~~~~~~gl~~i~cv~~~~~~~~~~~~--~~~ii---AyEpvwaIGt-g~  152 (224)
T d1hg3a_          79 LPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSNNPAVSAAVAAL--NPDYV---AVEPPELIGT-GI  152 (224)
T ss_dssp             CHHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT--CCSEE---EECCTTTTTT-SC
T ss_pred             CHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHC--CCCEE---EECCHHHHCC-CC
T ss_conf             022100457633552254652101111578889987599412210367888754201--24068---8514676346-66


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             332245899999999876329998089827889-1158999980997999864256988999999999971
Q 029661          113 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS  182 (190)
Q Consensus       113 ~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~~d~~~~~~~l~~~  182 (190)
                      ...+...+.+....+...+...+.+|..+|||+ .+....+.+.|+|++.+||++++++||.+.++.+-+.
T Consensus       153 ~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d~~~~~~~l~~~  223 (224)
T d1hg3a_         153 PVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVSG  223 (224)
T ss_dssp             CTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCEEECCCCHHHHHHHHHHC
T ss_conf             77703566666655565531456606985786988999999757998999720543486999999999862

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.96  E-value=3.2e-08  Score=63.20  Aligned_cols=164  Identities=13%  Similarity=0.139  Sum_probs=100.0

Q ss_pred             CHHHHHHHCCCCCCCEEEEEEECC---------HHHHHHHHHHCCCCEEEECCCCC---CCCHHHHHHHHHHHHCCCEEE
Q ss_conf             988898703479993788881129---------58899999874999999911378---852199999999980994999
Q 029661           12 GPLVVDALRPVTDLPLDVHLMIVE---------PEQRVPDFIKAGADIVSVHCEQS---STIHLHRTLNQIKDLGAKAGV   79 (190)
Q Consensus        12 g~~~i~~i~~~~~~~i~vhlmv~~---------p~~~i~~~~~~Gad~i~vh~e~~---~~~~~~~~i~~i~~~g~~~gl   79 (190)
                      ++..++.+|+.++.|...-.....         .......+..+|+|.+.+.....   ....+.+.++.++......-+
T Consensus        54 ~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  133 (230)
T d1yxya1          54 SVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLL  133 (230)
T ss_dssp             SHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             CHHHHHHHHHHHHCCHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf             80669999863302212000236776224420039999888864998999850356531044499999999841898467


Q ss_pred             EECCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCC
Q ss_conf             973899988899743113657997330688875332245899999999876329998089827889-1158999980997
Q 029661           80 VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGAN  158 (190)
Q Consensus        80 ~i~~~t~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad  158 (190)
                      .....|+-+...-....+|++...+...+..+....+... .+.+....     .+.++.++|||+ ++++.++.++|||
T Consensus       134 ~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~ipvia~GGI~t~~d~~~al~~GAd  207 (230)
T d1yxya1         134 MADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDV-ALIEALCK-----AGIAVIAEGKIHSPEEAKKINDLGVA  207 (230)
T ss_dssp             EEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCH-HHHHHHHH-----TTCCEEEESCCCSHHHHHHHHTTCCS
T ss_pred             ECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHH-HHHHHHHC-----CCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf             3477989999999860888898625344235523456888-89998733-----79829974899999999999986999


Q ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             99986425698899999999997103
Q 029661          159 ALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       159 ~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      .+.+||+|+   +|+..++++.+.++
T Consensus       208 ~V~vGsAi~---~p~~i~~~~~~~~~  230 (230)
T d1yxya1         208 GIVVGGAIT---RPKEIAERFIEALK  230 (230)
T ss_dssp             EEEECHHHH---CHHHHHHHHHHHTC
T ss_pred             EEEECHHHC---CHHHHHHHHHHHHC
T ss_conf             999892434---98999999999859

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=1.2e-07  Score=60.00  Aligned_cols=161  Identities=16%  Similarity=0.228  Sum_probs=112.7

Q ss_pred             CCCCHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf             77798889870347999378888112958899999874999999911378852199999999980994999973899988
Q 029661            9 ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS   88 (190)
Q Consensus         9 ~~~g~~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~   88 (190)
                      |.=..+.++.+|+.+++|+...=-+-||.+ +.....+|||.|.+-+...+.+.+.+.++.+++.|+.+.+.+.   ..+
T Consensus        86 F~Gs~~~l~~vr~~~~~PiLrKDFIid~~Q-I~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvEvh---~~~  161 (251)
T d1i4na_          86 FKGDPAFVRAARNLTCRPILAKDFYIDTVQ-VKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVH---SRE  161 (251)
T ss_dssp             SCCCTHHHHHHHTTCCSCEEEECCCCSTHH-HHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEEC---SHH
T ss_pred             CCCCHHHHHHHHHCCCCCHHHHHHHHCHHH-HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEECCCC---CHH
T ss_conf             899788999874013574034215527799-9888761355577533116499999999999982974002469---899


Q ss_pred             HHHHHHC--CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCC
Q ss_conf             8997431--13657997330688875332245899999999876329998089827889-11589999809979998642
Q 029661           89 AIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA  165 (190)
Q Consensus        89 ~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsa  165 (190)
                      .++..+.  ..+.+.+=.++..  .-......   -.++...+++   +..+....||+ ++.+..+ .+|+|.+-+|++
T Consensus       162 El~~al~~~~a~iiGINnRdL~--t~~vd~~~---~~~L~~~ip~---~~~~IaESGI~~~~d~~~l-~~G~davLIG~s  232 (251)
T d1i4na_         162 DLEKVFSVIRPKIIGINTRDLD--TFEIKKNV---LWELLPLVPD---DTVVVAESGIKDPRELKDL-RGKVNAVLVGTS  232 (251)
T ss_dssp             HHHHHHTTCCCSEEEEECBCTT--TCCBCTTH---HHHHGGGSCT---TSEEEEESCCCCGGGHHHH-TTTCSEEEECHH
T ss_pred             HHHHHHCCCCCCEEEEEECCHH--CCCHHHHH---HHHHHHHCCC---CCEEEECCCCCCHHHHHHH-HHCCCEEEECHH
T ss_conf             9998861355513345402221--02014568---9998840789---9979982799999999999-828999998868


Q ss_pred             CCCCCCHHHHHHHHHHH
Q ss_conf             56988999999999971
Q 029661          166 VFGAKDYAEAIKGIKTS  182 (190)
Q Consensus       166 i~~~~d~~~~~~~l~~~  182 (190)
                      +.+++||.+.+++|+..
T Consensus       233 Lm~~~~p~~~l~~l~a~  249 (251)
T d1i4na_         233 IMKAENPRRFLEEMRAW  249 (251)
T ss_dssp             HHHCSSHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHC
T ss_conf             74899999999998711

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=1.7e-08  Score=64.81  Aligned_cols=162  Identities=17%  Similarity=0.169  Sum_probs=112.6

Q ss_pred             CCCCHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf             77798889870347999378888112958899999874999999911378852199999999980994999973899988
Q 029661            9 ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS   88 (190)
Q Consensus         9 ~~~g~~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~   88 (190)
                      |.=+.+.++.+|+.+++|+...=-+-||.+ +.....+|||.|.+.+... .....+.++.+++.|+.+.+.+......+
T Consensus        91 F~Gs~~dl~~v~~~~~iPvLrKDFIid~~Q-I~ea~~~GADaVLLIaall-~~~l~~l~~~A~~lgl~~LVEvh~~~El~  168 (254)
T d1vc4a_          91 FGGSLLDLKRVREAVDLPLLRKDFVVDPFM-LEEARAFGASAALLIVALL-GELTGAYLEEARRLGLEALVEVHTERELE  168 (254)
T ss_dssp             SCCCHHHHHHHHHHCCSCEEEESCCCSHHH-HHHHHHTTCSEEEEEHHHH-GGGHHHHHHHHHHHTCEEEEEECSHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCCCCHHH-HHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf             556689999999873887224883445999-9888760523899999998-77789999999983983588760498874


Q ss_pred             HHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCC
Q ss_conf             899743113657997330688875332245899999999876329998089827889-1158999980997999864256
Q 029661           89 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus        89 ~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~  167 (190)
                      .....  ..+.|.+=.++.-+  ........   .++..+.++...+..+..-+||+ ++.+..+ ++|+|.+.+|+++.
T Consensus       169 ~a~~~--~a~iIGINnRdL~t--~~vd~~~~---~~l~~~i~~~~~~~i~IsESGI~~~~dv~~l-~~g~davLIGesLm  240 (254)
T d1vc4a_         169 IALEA--GAEVLGINNRDLAT--LHINLETA---PRLGRLARKRGFGGVLVAESGYSRKEELKAL-EGLFDAVLIGTSLM  240 (254)
T ss_dssp             HHHHH--TCSEEEEESBCTTT--CCBCTTHH---HHHHHHHHHTTCCSEEEEESCCCSHHHHHTT-TTTCSEEEECHHHH
T ss_pred             HHHCC--CCCEEEEECCCHHH--HHCCHHHH---HHHHHCCCCCCCCCEEEECCCCCCHHHHHHH-HCCCCEEEECHHHC
T ss_conf             65348--98789995255466--30246879---8863201126789889984699999999999-86999999883640


Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             9889999999999
Q 029661          168 GAKDYAEAIKGIK  180 (190)
Q Consensus       168 ~~~d~~~~~~~l~  180 (190)
                      +++||.+.+++|.
T Consensus       241 ~~~d~~~~l~~L~  253 (254)
T d1vc4a_         241 RAPDLEAALRELV  253 (254)
T ss_dssp             TSSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHC
T ss_conf             7999999999843

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.92  E-value=1.9e-08  Score=64.44  Aligned_cols=154  Identities=16%  Similarity=0.172  Sum_probs=108.9

Q ss_pred             CCCCHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf             77798889870347999378888112958899999874999999911378852199999999980994999973899988
Q 029661            9 ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS   88 (190)
Q Consensus         9 ~~~g~~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~   88 (190)
                      |.=+.+.+..+++.+++|+...=-+-||.+ +.....+|||.|.+.+...+..++.+.++.+++.|+.+.+.+......+
T Consensus        88 F~Gs~~dl~~v~~~~~~PiLrKDFIid~~Q-I~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~  166 (247)
T d1a53a_          88 FNGSYETLRKIASSVSIPILMKDFIVKESQ-IDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLD  166 (247)
T ss_dssp             TCCCHHHHHHHHHHCCSCEEEESCCCSHHH-HHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEEECSHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCCEEECCCCCCHHH-HHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             111347899997215666131353257678-9999970314445536520178889999999998656776158999999


Q ss_pred             HHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCC
Q ss_conf             899743113657997330688875332245899999999876329998089827889-1158999980997999864256
Q 029661           89 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus        89 ~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~  167 (190)
                      ...+.  ..+.|.+=..+.  ......   ++...++...+++   +..+..-+||+ ++.+..+.++|+|.+.+|+++.
T Consensus       167 ~a~~~--~a~iIGINnRnL--~t~~vd---~~~~~~L~~~ip~---~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLm  236 (247)
T d1a53a_         167 IALRI--GARFIGINSRDL--ETLEIN---KENQRKLISMIPS---NVVKVAESGISERNEIEELRKLGVNAFLIGSSLM  236 (247)
T ss_dssp             HHHHT--TCSEEEEESBCT--TTCCBC---HHHHHHHHHHSCT---TSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHH
T ss_pred             HHHHC--CCCEEEEECCCH--HHHHHH---HHHHHHHHHHCCC---CCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHC
T ss_conf             99817--998376634575--654320---4689999852888---9869996389999999999977999999898876


Q ss_pred             CCCCHH
Q ss_conf             988999
Q 029661          168 GAKDYA  173 (190)
Q Consensus       168 ~~~d~~  173 (190)
                      +++|+.
T Consensus       237 k~~d~~  242 (247)
T d1a53a_         237 RNPEKI  242 (247)
T ss_dssp             HCTTHH
T ss_pred             CCCCHH
T ss_conf             899664

>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=1.3e-07  Score=59.77  Aligned_cols=149  Identities=15%  Similarity=0.118  Sum_probs=89.2

Q ss_pred             HHHHHCCCCCCCEEEEEEECCHHHHHHH-------HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCE-EEEECCCCC
Q ss_conf             8987034799937888811295889999-------98749999999113788521999999999809949-999738999
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPD-------FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA-GVVLNPATS   86 (190)
Q Consensus        15 ~i~~i~~~~~~~i~vhlmv~~p~~~i~~-------~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~-gl~i~~~t~   86 (190)
                      .+..+.+..++++-+|++..|..+.+..       +...|+|++|+|+..+ .+.+..+.+.+++.+... ++.+..+.+
T Consensus        76 ~~~~~~~~~~~~IflDlK~~DIpnTv~~a~~a~~~~~~~~~d~vTvh~~~G-~~~l~~~~~~~~~~~~~~~~~~~l~~~~  154 (267)
T d1dqwa_          76 PLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVG-PGIVSGLKQAAEEVTKEPRGLLMLAELS  154 (267)
T ss_dssp             HHHHHHHHHTCEEEEEEEECCCHHHHHHHHHSTTTCHHHHCSEEEEESTTC-THHHHHHHHHHHHHCSSCCEEEEECSCC
T ss_pred             HHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             999998605963763763048768999999999987653785899658677-8899999997640287554111233200


Q ss_pred             ------HH-HHHHHH---C-CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC-----------
Q ss_conf             ------88-899743---1-1365799733068887533224589999999987632999808982788-----------
Q 029661           87 ------LS-AIECVL---D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-----------  144 (190)
Q Consensus        87 ------~~-~~~~~~---~-~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI-----------  144 (190)
                            .+ ....+.   . ..|.+.....+ ...           ++   ...   +.++ +.+..||           
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~~~~gvvg~~~~-~~~-----------~~---~~~---~~~~-~ivtpgir~~~~~~~~g~  215 (267)
T d1dqwa_         155 CKGSLSTGEYTKGTVDIAKSDKDFVIGFIAQ-RDM-----------GG---RDE---GYDW-LIMTPGVGLDDKGDALGQ  215 (267)
T ss_dssp             STTCCCCHHHHHHHHHHHTTCTTTEEEEECS-SCC-----------CC---TTT---TCCC-EEEECSBCSSTTTCSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEEEHH-HHH-----------HH---HHC---CCCC-EEECCCCCCCCCCCCCCC
T ss_conf             0002235569999999999678984465203-788-----------88---762---8641-674564446789988885


Q ss_pred             CCCCHHHHHHCCCCEEEECCCCC-CCCCHHHHHHHHHHHH
Q ss_conf             91158999980997999864256-9889999999999710
Q 029661          145 GPKNAYKVIEAGANALVAGSAVF-GAKDYAEAIKGIKTSK  183 (190)
Q Consensus       145 ~~~~~~~~~~aGad~iVvGsai~-~~~d~~~~~~~l~~~~  183 (190)
                      +..|+.+++++|+|++||||+|+ +++||.++++++++..
T Consensus       216 q~~tp~eAi~~Gad~iVVGR~I~~aa~dp~~aak~~r~~~  255 (267)
T d1dqwa_         216 QYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAG  255 (267)
T ss_dssp             CCBCHHHHHHTTCCEEEECGGGTSTTCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHCCCCEEEECCHHCCCCCCHHHHHHHHHHHH
T ss_conf             6589999998799999989733378899999999999999

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=3.7e-08  Score=62.86  Aligned_cols=160  Identities=12%  Similarity=0.068  Sum_probs=111.9

Q ss_pred             CCCCHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf             77798889870347999378888112958899999874999999911378852199999999980994999973899988
Q 029661            9 ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS   88 (190)
Q Consensus         9 ~~~g~~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~   88 (190)
                      |.=+.+.++.+|+.+++|+...=-+-||.+ +.....+|||.|.+-+...+...+.+.++.+++.|+.+-+.+.....++
T Consensus        93 F~Gs~~~l~~v~~~~~~PiLrKDFIid~~Q-I~ear~~GADavLLI~~~L~~~~l~~l~~~a~~lgl~~LVEvh~~~El~  171 (254)
T d1piia2          93 FQGSFNFLPIVSQIAPQPILCKDFIIDPYQ-IYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQE  171 (254)
T ss_dssp             TCCCTTHHHHHHHHCCSCEEEESCCCSHHH-HHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCCCCHHCCCCCHHH-HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             788899998887236654101200076999-9898750321433448651410778999999998536788641499997


Q ss_pred             HHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCC
Q ss_conf             899743113657997330688875332245899999999876329998089827889-1158999980997999864256
Q 029661           89 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus        89 ~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~  167 (190)
                      ...+.  ..+.|.+=.++..  .  |. ..+++-.++..++++   +..+....||+ ++++..+ .+|+|.+-+|+++.
T Consensus       172 ~a~~~--~a~iIGINnRnL~--t--f~-vd~~~t~~L~~~ip~---~~~~VsESGI~~~~d~~~l-~~g~davLiGeslm  240 (254)
T d1piia2         172 RAIAL--GAKVVGINNRDLR--D--LS-IDLNRTRELAPKLGH---NVTVISESGINTYAQVREL-SHFANGFLIGSALM  240 (254)
T ss_dssp             HHHHT--TCSEEEEESEETT--T--TE-ECTHHHHHHHHHHCT---TSEEEEESCCCCHHHHHHH-TTTCSEEEECHHHH
T ss_pred             HHHHH--CCCCCCCCCCCHH--H--HH-HHHHHHHHHHHHCCC---CCEEEECCCCCCHHHHHHH-HCCCCEEEECHHHH
T ss_conf             88751--4121676552532--3--12-204799999975899---9889981799999999999-84899999896876


Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             9889999999999
Q 029661          168 GAKDYAEAIKGIK  180 (190)
Q Consensus       168 ~~~d~~~~~~~l~  180 (190)
                      +++||.+++++|-
T Consensus       241 ~~~dp~~~l~~Ll  253 (254)
T d1piia2         241 AHDDLHAAVRRVL  253 (254)
T ss_dssp             TCSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
T ss_conf             7999999999983

>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Plasmodium vivax [TaxId: 5855]

Probab=98.63  E-value=1.1e-08  Score=65.92  Aligned_cols=168  Identities=15%  Similarity=0.138  Sum_probs=94.4

Q ss_pred             CCCHH-------HHHHHCCCCCCCEEEEEEECCHH----HHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHHC-CC
Q ss_conf             77988-------89870347999378888112958----89999987-49999999113788521999999999809-94
Q 029661           10 TIGPL-------VVDALRPVTDLPLDVHLMIVEPE----QRVPDFIK-AGADIVSVHCEQSSTIHLHRTLNQIKDLG-AK   76 (190)
Q Consensus        10 ~~g~~-------~i~~i~~~~~~~i~vhlmv~~p~----~~i~~~~~-~Gad~i~vh~e~~~~~~~~~~i~~i~~~g-~~   76 (190)
                      .+|+.       +++++++ .++++-.|+|-.|..    .|++.+.+ .++|++|+|+-.+ .+.+..+.....+.+ ..
T Consensus       122 ~~G~~G~~~L~~ii~~l~~-~g~~VflD~K~~DIgnTv~~ya~a~~~~~~~DavTVhp~~G-~d~l~p~~~~~~~~~~kg  199 (332)
T d2ffca1         122 PYGSLGVDVLKNVFDYLHH-LNVPTILDIKMNDIGNTVKHYRKFIFDYLRSDSCTANIYMG-TQMLRDICLDEECKRYYS  199 (332)
T ss_dssp             TTTHHHHHHHHHHHHHHHH-HTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTC-STTHHHHHBCTTSCCBCE
T ss_pred             HHHHHHHHHHHHHHHHHCC-CCCCEEEHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCH-HHHHHHHHHHHHHCCCCC
T ss_conf             7219999999999998502-56645500254067999999999987056887788535444-878789999987346665


Q ss_pred             EEEEECCCCC-HHHHHHHHCCCCE---------E------EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             9999738999-8889974311365---------7------9973306888753322458999999998763299980898
Q 029661           77 AGVVLNPATS-LSAIECVLDVVDL---------V------LIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV  140 (190)
Q Consensus        77 ~gl~i~~~t~-~~~~~~~~~~~d~---------v------l~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v  140 (190)
                      +.+....+.+ -..+......-..         +      ..+.-..|..|-.-.....+.++.+|+..++    ..| +
T Consensus       200 v~vL~~tSn~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~V~gat~p~e~~~iR~~~~~----~~i-L  274 (332)
T d2ffca1         200 TFVLVKTTNADSHIFQNRLSLDGKEAYVVIAEEVQKMAKQLHLEENGEFVGFVVGANCYDEIKKIRELFPD----CYI-L  274 (332)
T ss_dssp             EEEEEECSSTTTHHHHTTCEETTEEHHHHHHHHHHHHHHHTTTGGGTCCEEEEECTTCHHHHHHHHHHCTT----CCE-E
T ss_pred             CEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCC----CEE-E
T ss_conf             23212467515888876324663114678999999999997764204656646753404777899985899----849-8


Q ss_pred             ECCCCC--CCHHHH------HHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             278891--158999------98099799986425698899999999997103
Q 029661          141 DGGVGP--KNAYKV------IEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       141 dGGI~~--~~~~~~------~~aGad~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      ..||+.  .+.+++      .+.|++++++||+|++++||.++++++++.++
T Consensus       275 ~PGIGaQggDq~rv~t~~~a~~~ga~~IvvGR~I~~A~dp~~aa~~i~~ei~  326 (332)
T d2ffca1         275 APGVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIK  326 (332)
T ss_dssp             ECCBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCHHHHHCHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             1886767789888759876865695599969111679998999999999999

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.54  E-value=8.4e-07  Score=55.18  Aligned_cols=157  Identities=18%  Similarity=0.226  Sum_probs=101.6

Q ss_pred             HHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCC-EEEEECC--C------
Q ss_conf             889870347999378888112958899999874999999911378852199999999980994-9999738--9------
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK-AGVVLNP--A------   84 (190)
Q Consensus        14 ~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~-~gl~i~~--~------   84 (190)
                      ..++.+.+.+..|+.+.=-+.+. +.++.+.++|++.|.+.-.+  ..++...-+.++..|.. +.+++..  +      
T Consensus        66 ~~i~~i~~~~~~pi~~gGGIr~~-e~~~~ll~~G~~kVii~s~~--~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v  142 (252)
T d1h5ya_          66 DSVKRVAEAVSIPVLVGGGVRSL-EDATTLFRAGADKVSVNTAA--VRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEV  142 (252)
T ss_dssp             HHHHHHHHHCSSCEEEESSCCSH-HHHHHHHHHTCSEEEESHHH--HHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEE
T ss_pred             HHHHHHHHHCCCCCEEECCCCHH-HHHHHHHHCCCCEEEECCCC--CCCCCHHHHHHHHCCCCCEEEEEEEEECCCCEEE
T ss_conf             99998875048863130452114-55566752488079834544--5796167899986287858999999976993799


Q ss_pred             -----------CCHHHHHHHHCC-CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHH
Q ss_conf             -----------998889974311-3657997330688875332245899999999876329998089827889-115899
Q 029661           85 -----------TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYK  151 (190)
Q Consensus        85 -----------t~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~  151 (190)
                                 ++.++++++.+. +.-++++.++--...+.++-..   ++++++..     +.++.+.||++ .+.+.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~G~d~~~---~~~i~~~~-----~~pii~~GGv~~~~di~~  214 (252)
T d1h5ya_         143 YVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVEL---IRRVADSV-----RIPVIASGGAGRVEHFYE  214 (252)
T ss_dssp             EETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHH---HHHHHHHC-----SSCEEEESCCCSHHHHHH
T ss_pred             EEECCEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH---HHHHHHHC-----CCCEEEECCCCCHHHHHH
T ss_conf             9969968689889999999985699989997254567668769999---99999863-----987797438899999999


Q ss_pred             HHHCCCCEEEECCCCC-CCCCHHHHHHHHHH
Q ss_conf             9980997999864256-98899999999997
Q 029661          152 VIEAGANALVAGSAVF-GAKDYAEAIKGIKT  181 (190)
Q Consensus       152 ~~~aGad~iVvGsai~-~~~d~~~~~~~l~~  181 (190)
                      +.+.|++++++||++. +.-++.+..+.+++
T Consensus       215 l~~~g~~gv~~gs~l~~~~~~~~~lk~~l~~  245 (252)
T d1h5ya_         215 AAAAGADAVLAASLFHFRVLSIAQVKRYLKE  245 (252)
T ss_dssp             HHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred             HHHCCCCEEEEHHHHHCCCCCHHHHHHHHHH
T ss_conf             9878998999805878599999999999998

>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium berghei [TaxId: 5821]

Probab=98.52  E-value=8.4e-08  Score=60.84  Aligned_cols=168  Identities=14%  Similarity=0.153  Sum_probs=91.8

Q ss_pred             CCCHHHH-------HHHCCCCCCCEEEEEEECCHHH----HHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHH-CCC
Q ss_conf             7798889-------8703479993788881129588----9999987-4999999911378852199999999980-994
Q 029661           10 TIGPLVV-------DALRPVTDLPLDVHLMIVEPEQ----RVPDFIK-AGADIVSVHCEQSSTIHLHRTLNQIKDL-GAK   76 (190)
Q Consensus        10 ~~g~~~i-------~~i~~~~~~~i~vhlmv~~p~~----~i~~~~~-~Gad~i~vh~e~~~~~~~~~~i~~i~~~-g~~   76 (190)
                      .+|+.-+       +++++ .++++-.|++-.|...    |++.+.+ .++|++|+|+-.+ .+.+..+++...+. +..
T Consensus       112 ~~G~~G~~~L~~~i~~l~~-~g~~VflDlK~~DIpnTv~~ya~a~~~~l~aD~lTVh~~~G-~d~l~~~~~~~~~~~~kg  189 (324)
T d2fdsa1         112 PYGSVGINALKNVFDYLNS-MNIPTMLDMKINDIGNTVKNYRKFIFEYLKSDSCTINVYMG-TSMLKDICFDYEKNKYYS  189 (324)
T ss_dssp             GGTHHHHHHHHHHHHHHHH-TTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTC-STTHHHHSEETTTTEECE
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCCCEEEEHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCC-HHHHHHHHHHHHHCCCCC
T ss_conf             8178899999999998640-58728974012063769999999764058976798615674-899999999887425765


Q ss_pred             EEEEECCCCCH-HHHHHHHCCC---------CEEEEEE------EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             99997389998-8899743113---------6579973------306888753322458999999998763299980898
Q 029661           77 AGVVLNPATSL-SAIECVLDVV---------DLVLIMS------VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV  140 (190)
Q Consensus        77 ~gl~i~~~t~~-~~~~~~~~~~---------d~vl~m~------v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v  140 (190)
                      +.+...++.|- ..++.....-         +.+.-++      ...+..|-.......+.++.+|+..++    ..+ +
T Consensus       190 v~vL~~tSn~~s~~~q~~~~~~~~~~~~~v~~~~~~~a~~~~~~~~~~~~G~Vvgat~p~el~~iR~~~~~----~~i-L  264 (324)
T d2fdsa1         190 AYVLIKTTNKDSFIFQNELSINDKQAYIVMAEETQKMATDLKIDQNNEFIGFVVGSNAFEEMKIIRNKFPD----SYI-L  264 (324)
T ss_dssp             EEEEEECSSGGGHHHHTTCEETTEEHHHHHHHHHHHHHHHHTTGGGTCCEEEEECTTCHHHHHHHHHHSTT----CCE-E
T ss_pred             CEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHCCC----CEE-E
T ss_conf             30220037517777654312477632015789999999997764135776636335406787888876899----759-9


Q ss_pred             ECCCCCC--CHHHHH------HCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             2788911--589999------8099799986425698899999999997103
Q 029661          141 DGGVGPK--NAYKVI------EAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       141 dGGI~~~--~~~~~~------~aGad~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      ..||+.+  +.++..      +.|++.+|+||+|++++||.++++.+++.+.
T Consensus       265 ~PGIGaQggDq~rv~~~~~a~~~g~~~ivvgR~I~~A~dp~~aa~~i~~~i~  316 (324)
T d2fdsa1         265 SPGIGAQNGDLYKTLKNGYNKDYEKLLINVGRAITKSPNPKKSSESYYNQII  316 (324)
T ss_dssp             ECCC-----CHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCHHHHHCHHHHHHCCCEEEEECHHHCCCCCHHHHHHHHHHHHH
T ss_conf             2762677899888857654544495199969243369998999999999999

>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate decarboxylase {Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]

Probab=98.52  E-value=4.2e-08  Score=62.54  Aligned_cols=169  Identities=15%  Similarity=0.085  Sum_probs=92.0

Q ss_pred             CCCHHHHHHHCCC------CCCCEEEEEEECCHHH----HHHHH-HHCCCCEEEECCCCCCCCHHHHHHHHHHHHC-CCE
Q ss_conf             7798889870347------9993788881129588----99999-8749999999113788521999999999809-949
Q 029661           10 TIGPLVVDALRPV------TDLPLDVHLMIVEPEQ----RVPDF-IKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKA   77 (190)
Q Consensus        10 ~~g~~~i~~i~~~------~~~~i~vhlmv~~p~~----~i~~~-~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g-~~~   77 (190)
                      .+|+.-++.|.+.      .++++-.|++-.|...    |.+.. ...++|++|+|+-.+ .+.+..+++...+.. ..+
T Consensus       110 ~~G~~G~~~L~~~i~~~~~~g~~VflD~K~gDIgnTv~~ya~a~~~~~~aD~vTVhp~~G-~d~l~~~~~~~~~~~~kgv  188 (323)
T d2q8za1         110 PYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMG-TNMLKDICYDEEKNKYYSA  188 (323)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTC-SGGGGGTSEETTTTEECEE
T ss_pred             HCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC-HHHHHHHHHHHHHCCCCCE
T ss_conf             807278999999987622368628985101053779999998630367861897445534-7789999998763256640


Q ss_pred             EEEECCCCCH-HHHHHHHCCC---------CEEEE------EEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             9997389998-8899743113---------65799------733068887533224589999999987632999808982
Q 029661           78 GVVLNPATSL-SAIECVLDVV---------DLVLI------MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD  141 (190)
Q Consensus        78 gl~i~~~t~~-~~~~~~~~~~---------d~vl~------m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vd  141 (190)
                      .+...++.|- ..+......-         +.+..      +.-.+|..|-.-.....+.++.+|+..++    ..+. .
T Consensus       189 ~vl~~tSn~~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~G~Vvgat~p~e~~~ir~~~~~----~~iL-~  263 (323)
T d2q8za1         189 FVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPN----CYIL-S  263 (323)
T ss_dssp             EEEEECCSTTTHHHHTTCEETTEEHHHHHHHHHHHHHHHTTTGGGTCCEEEEECTTCHHHHHHHHHHSTT----CCEE-E
T ss_pred             EEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCC----CEEE-C
T ss_conf             4410257725777765225665136788999999999997663125666558752516888999976899----8298-0


Q ss_pred             CCCCCC--CHHHH------HHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             788911--58999------98099799986425698899999999997103
Q 029661          142 GGVGPK--NAYKV------IEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       142 GGI~~~--~~~~~------~~aGad~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      .||+.+  ..++.      .+.|++.+++||+|++++||.++++.+++.++
T Consensus       264 PGIGaQggDq~rv~t~~~a~~~g~~~ivvgR~I~~a~dp~~aa~~~~~ei~  314 (323)
T d2q8za1         264 PGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQIN  314 (323)
T ss_dssp             CCSSTTCCCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHCHHHHHHCCCEEEEECHHHCCCCCHHHHHHHHHHHHH
T ss_conf             886666789767639877865696399979553379999999999999999

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=1.2e-06  Score=54.28  Aligned_cols=147  Identities=16%  Similarity=0.105  Sum_probs=83.9

Q ss_pred             HHHHHHHCCC--CCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf             8889870347--99937888811295889999987499999991137885219999999998099499997389998889
Q 029661           13 PLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI   90 (190)
Q Consensus        13 ~~~i~~i~~~--~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~~~   90 (190)
                      .+.++++++.  ++..+-+-. +.+++ .++.+.++|++.+.-+.-     + .++++.+++++......+.  ||-|..
T Consensus        48 ~~~i~~l~~~~~~~~~vGaGT-V~~~~-~~~~a~~aGa~fivsP~~-----~-~~v~~~~~~~~i~~iPGv~--TpsEi~  117 (202)
T d1wa3a1          48 DTVIKELSFLKEKGAIIGAGT-VTSVE-QCRKAVESGAEFIVSPHL-----D-EEISQFCKEKGVFYMPGVM--TPTELV  117 (202)
T ss_dssp             HHHHHHTHHHHHTTCEEEEES-CCSHH-HHHHHHHHTCSEEECSSC-----C-HHHHHHHHHHTCEEECEEC--SHHHHH
T ss_pred             HHHHHHHHHHCCCCCEEEECC-CCCHH-HHHHHHHHCCCEEECCCC-----C-HHHHHHHHHCCCCEECCCC--CHHHHH
T ss_conf             999999998508984898514-23378-999998605647747877-----3-9999999865995617818--688999


Q ss_pred             HHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             97431136579973306888753322458999999998763299980898278891158999980997999864256988
Q 029661           91 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus        91 ~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~iVvGsai~~~~  170 (190)
                      .-+-...|++-+   .|+.   ...+   +.++.++..+    .+.++...|||+.+|+.++.++|+..+.+||.+++ .
T Consensus       118 ~A~~~G~~~lK~---fPa~---~~G~---~~lk~l~~p~----p~i~~iptGGI~~~n~~~~l~aga~avg~Gs~l~~-~  183 (202)
T d1wa3a1         118 KAMKLGHTILKL---FPGE---VVGP---QFVKAMKGPF----PNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK-G  183 (202)
T ss_dssp             HHHHTTCCEEEE---TTHH---HHHH---HHHHHHHTTC----TTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHC-S
T ss_pred             HHHHCCCCEEEE---CCHH---HCCH---HHHHHHHCCC----CCCCEEEECCCCHHHHHHHHHCCCEEEEECHHHCC-C
T ss_conf             999779998975---4332---1598---8999996722----47847865799988899999789929998356248-9


Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9999999999710
Q 029661          171 DYAEAIKGIKTSK  183 (190)
Q Consensus       171 d~~~~~~~l~~~~  183 (190)
                      |+.+..+..++.+
T Consensus       184 ~~~~i~~~a~~~~  196 (202)
T d1wa3a1         184 TPDEVREKAKAFV  196 (202)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9999999999999

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=1.8e-06  Score=53.37  Aligned_cols=158  Identities=20%  Similarity=0.189  Sum_probs=100.7

Q ss_pred             HHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCE-EEEECC--------
Q ss_conf             88898703479993788881129588999998749999999113788521999999999809949-999738--------
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA-GVVLNP--------   83 (190)
Q Consensus        13 ~~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~-gl~i~~--------   83 (190)
                      .+.++.+.+.+..|+.+-==+.+ .+.++.+.+.|++.|.+.-.+  ..++..+-+.+++.|... .+++..        
T Consensus        63 ~~~i~~i~~~~~~pi~vgGGIr~-~e~i~~~l~~Ga~kviigs~~--~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~  139 (253)
T d1thfd_          63 LELVEKVAEQIDIPFTVGGGIHD-FETASELILRGADKVSINTAA--VENPSLITQIAQTFGSQAVVVAIDAKRVDGEFM  139 (253)
T ss_dssp             HHHHHHHHTTCCSCEEEESSCCS-HHHHHHHHHTTCSEEEESHHH--HHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEE
T ss_pred             HHHHHHHHHCCCCCCEEECCCCC-CHHHHHHHHCCCCEEEECHHH--HHCHHHHHHHHHHCCCEEEEEEEEECCCCCCEE
T ss_conf             99999998415730024303000-124466786289899987488--509499998999809814997553101378136


Q ss_pred             -----C------CCHHHHHHHHCC-CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHH
Q ss_conf             -----9------998889974311-3657997330688875332245899999999876329998089827889-11589
Q 029661           84 -----A------TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY  150 (190)
Q Consensus        84 -----~------t~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~  150 (190)
                           .      +..+++.++.+. +..++++.++--...+.++-..   ++++++.     .+.++.+.||++ .+.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~l---l~~i~~~-----~~~pvi~~GGv~s~~di~  211 (253)
T d1thfd_         140 VFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEM---IRFVRPL-----TTLPIIASGGAGKMEHFL  211 (253)
T ss_dssp             EEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHH---HHHHGGG-----CCSCEEEESCCCSHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC---CCCCCCC-----CCCEEEEECCCCCHHHHH
T ss_conf             65431145542228899999975559879999862457667754111---1110245-----466079844889999999


Q ss_pred             HHHHCCCCEEEECCCCCCC-CCHHHHHHHHHH
Q ss_conf             9998099799986425698-899999999997
Q 029661          151 KVIEAGANALVAGSAVFGA-KDYAEAIKGIKT  181 (190)
Q Consensus       151 ~~~~aGad~iVvGsai~~~-~d~~~~~~~l~~  181 (190)
                      ++.++|++++++||++... -++.+..+.+++
T Consensus       212 ~l~~~g~~gvivgsal~~~~~~~~~~k~~l~~  243 (253)
T d1thfd_         212 EAFLAGADAALAASVFHFREIDVRELKEYLKK  243 (253)
T ss_dssp             HHHHTTCSEEEESHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHCCCCEEEECHHHHCCCCCHHHHHHHHHH
T ss_conf             99978997999814877699999999999998

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=98.40  E-value=2.4e-06  Score=52.57  Aligned_cols=158  Identities=17%  Similarity=0.146  Sum_probs=101.7

Q ss_pred             HHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEE-EC---------
Q ss_conf             88898703479993788881129588999998749999999113788521999999999809949999-73---------
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LN---------   82 (190)
Q Consensus        13 ~~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~-i~---------   82 (190)
                      .+.++.+.+.+..|+.+.=-+.+.+ .++.+.+.|++.|++.-.+  ..++.-.-+.++..|....++ +.         
T Consensus        63 ~~~i~~i~~~~~~pi~vgGGIrs~e-~~~~ll~~Ga~kVii~s~~--~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~  139 (251)
T d1ka9f_          63 LDVVARVAERVFIPLTVGGGVRSLE-DARKLLLSGADKVSVNSAA--VRRPELIRELADHFGAQAVVLAIDARWRGDFPE  139 (251)
T ss_dssp             HHHHHHHHTTCCSCEEEESSCCSHH-HHHHHHHHTCSEEEECHHH--HHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEE
T ss_pred             HHHHHHHHHCCCCCHHEECCCCCHH-HHHHHHHCCCCEEEECCHH--HHCHHHHHHHHHHHCCCCCCCCCCHHHCCCCEE
T ss_conf             8999988860485121011534788-8889997489779989445--438789999987620233221102000221027


Q ss_pred             ----C-----C-CCHHHHHHHHCC-CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHH
Q ss_conf             ----8-----9-998889974311-3657997330688875332245899999999876329998089827889-11589
Q 029661           83 ----P-----A-TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY  150 (190)
Q Consensus        83 ----~-----~-t~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~  150 (190)
                          .     + .+.+++..+.+. +..++++.++--...+.++-   +-++++.+..     +.++.+.||++ .+.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~d~---~l~~~i~~~~-----~~pii~~GGv~~~~dl~  211 (251)
T d1ka9f_         140 VHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDL---RLTRMVAEAV-----GVPVIASGGAGRMEHFL  211 (251)
T ss_dssp             EEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCH---HHHHHHHHHC-----SSCEEEESCCCSHHHHH
T ss_pred             EEECCCEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCH---HHHHHHHHHC-----CEEEEEECCCCCHHHHH
T ss_conf             995145120786699999877755998899985434576678525---6777898631-----40299965889999999


Q ss_pred             HHHHCCCCEEEECCCCCCC-CCHHHHHHHHHH
Q ss_conf             9998099799986425698-899999999997
Q 029661          151 KVIEAGANALVAGSAVFGA-KDYAEAIKGIKT  181 (190)
Q Consensus       151 ~~~~aGad~iVvGsai~~~-~d~~~~~~~l~~  181 (190)
                      ++.+.|++++++||+++.. -++.+..+.+.+
T Consensus       212 ~l~~~g~~gviig~al~~g~~~~~~~k~~l~~  243 (251)
T d1ka9f_         212 EAFQAGAEAALAASVFHFGEIPIPKLKRYLAE  243 (251)
T ss_dssp             HHHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred             HHHHCCCCEEEEHHHHHCCCCCHHHHHHHHHH
T ss_conf             99978997999847978699999999999998

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=4e-06  Score=51.36  Aligned_cols=140  Identities=18%  Similarity=0.249  Sum_probs=82.6

Q ss_pred             HHHHHHCCCCCCCEEEEEEECCHH-HHHH-HHHHCC-C--------CEEEE---CCCCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf             889870347999378888112958-8999-998749-9--------99999---11378852199999999980994999
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPE-QRVP-DFIKAG-A--------DIVSV---HCEQSSTIHLHRTLNQIKDLGAKAGV   79 (190)
Q Consensus        14 ~~i~~i~~~~~~~i~vhlmv~~p~-~~i~-~~~~~G-a--------d~i~v---h~e~~~~~~~~~~i~~i~~~g~~~gl   79 (190)
                      .+++.++. ++.. .++.-=.-|+ ++++ .+..+| +        |.+.+   |...  ...+.+.++.+++.....-+
T Consensus         7 ~~v~~~~~-~~~~-i~~TRKt~Pg~r~~~k~Av~~GGg~~HR~~L~d~ilikdNHi~~--~g~i~~~i~~~k~~~~~~~I   82 (169)
T d1qpoa1           7 AWVDAVRG-TKAK-IRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAA--AGSVVDALRAVRNAAPDLPC   82 (169)
T ss_dssp             HHHHHTTT-SSCE-EECCSCCCTTCHHHHHHHHHHTTCBCCCCSSSSSEEECHHHHHH--HSSHHHHHHHHHHHCTTSCE
T ss_pred             HHHHHHCC-CCCE-EEECCCCCCCHHHHHHHHHHHCCCEEECCCCCCEEEEEHHHHHH--HCCHHHHHHHHHHHCCCCCE
T ss_conf             99998538-9998-96647788464799985122157423038875017862427867--26305543456652688756


Q ss_pred             EECCCCCHHHHHHHH-CCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCC
Q ss_conf             973899988899743-1136579973306888753322458999999998763299980898278891158999980997
Q 029661           80 VLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN  158 (190)
Q Consensus        80 ~i~~~t~~~~~~~~~-~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad  158 (190)
                      .+...+ .+.+.+.+ ..+|.|++--         |.|..+.   ++..+....+.++.+++-|||+.+|+.++.+.|+|
T Consensus        83 ~VEv~s-~~q~~~a~~~~~diImLDN---------~sp~~~k---~~v~~~~~~~~~i~lEaSGgI~~~ni~~ya~~GvD  149 (169)
T d1qpoa1          83 EVEVDS-LEQLDAVLPEKPELILLDN---------FAVWQTQ---TAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVD  149 (169)
T ss_dssp             EEEESS-HHHHHHHGGGCCSEEEEET---------CCHHHHH---HHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCS
T ss_pred             EEEECC-HHHHHHHHHCCCCEEEECC---------CCHHHHH---HHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCC
T ss_conf             998342-7776566533881999637---------6837689---99998636587069997679798999999973999


Q ss_pred             EEEECCCCCCCC
Q ss_conf             999864256988
Q 029661          159 ALVAGSAVFGAK  170 (190)
Q Consensus       159 ~iVvGsai~~~~  170 (190)
                      .+.+|+..++++
T Consensus       150 ~IS~galt~sa~  161 (169)
T d1qpoa1         150 YLAVGALTHSVR  161 (169)
T ss_dssp             EEECGGGTSSBC
T ss_pred             EEECCCCCCCCC
T ss_conf             998782436897

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1e-05  Score=48.99  Aligned_cols=149  Identities=15%  Similarity=0.111  Sum_probs=81.7

Q ss_pred             HHHHHHHCC-CCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf             888987034-7999378888112958899999874999999911378852199999999980994999973899988899
Q 029661           13 PLVVDALRP-VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE   91 (190)
Q Consensus        13 ~~~i~~i~~-~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~~~~   91 (190)
                      .+.++.+++ +++..+-+-.- .+++ .++.+.++|++.+.-+.-   .   .+++++++++++-...-+.+.|.+  ..
T Consensus        54 ~~~I~~l~~~~p~~~vGaGTV-~~~~-~~~~a~~aGa~FivSP~~---~---~~v~~~a~~~~i~~iPGv~TpsEi--~~  123 (213)
T d1wbha1          54 VDAIRAIAKEVPEAIVGAGTV-LNPQ-QLAEVTEAGAQFAISPGL---T---EPLLKAATEGTIPLIPGISTVSEL--ML  123 (213)
T ss_dssp             HHHHHHHHHHCTTSEEEEESC-CSHH-HHHHHHHHTCSCEEESSC---C---HHHHHHHHHSSSCEEEEESSHHHH--HH
T ss_pred             HHHHHHHHHHCCCCEEECCCC-CCHH-HHHHHHHCCCCEEECCCC---C---HHHHHHHHHCCCCCCCCCCCHHHH--HH
T ss_conf             999999999789871522304-6389-999999779929978989---8---899999985598755882877999--99


Q ss_pred             HHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCC--
Q ss_conf             743113657997330688875332245899999999876329998089827889115899998099799986425698--
Q 029661           92 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA--  169 (190)
Q Consensus        92 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~iVvGsai~~~--  169 (190)
                      -+-...+.+-+   .|...   +.  ....++.++..+    .+.++...|||+.+|+.++.++|+..+++||.++..  
T Consensus       124 A~~~G~~~vKl---FPA~~---~G--g~~~lkal~~p~----p~~~~~ptGGV~~~n~~~yl~~g~v~~~~Gs~l~~~~~  191 (213)
T d1wbha1         124 GMDYGLKEFKF---FPAEA---NG--GVKALQAIAGPF----SQVRFCPTGGISPANYRDYLALKSVLCIGGSWLVPADA  191 (213)
T ss_dssp             HHHTTCCEEEE---TTTTT---TT--HHHHHHHHHTTC----TTCEEEEBSSCCTTTHHHHHTSTTBSCEEEGGGSCHHH
T ss_pred             HHHCCCCEEEE---CCCHH---CC--HHHHHHHHCCCC----CCCCEEEECCCCHHHHHHHHHCCCEEEEECHHHCCHHH
T ss_conf             99779997985---31042---07--599999862736----57836534798888899999589879998825479666


Q ss_pred             ---CCHHHHHHHHHHHH
Q ss_conf             ---89999999999710
Q 029661          170 ---KDYAEAIKGIKTSK  183 (190)
Q Consensus       170 ---~d~~~~~~~l~~~~  183 (190)
                         .|+++..+..++.+
T Consensus       192 i~~~d~~~i~~~a~~~v  208 (213)
T d1wbha1         192 LEAGDYDRITKLAREAV  208 (213)
T ss_dssp             HHHTCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHH
T ss_conf             64479999999999999

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=98.16  E-value=6.6e-05  Score=44.47  Aligned_cols=144  Identities=24%  Similarity=0.326  Sum_probs=88.3

Q ss_pred             HHHCCCCCCCEEEEEEEC-CHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHH
Q ss_conf             870347999378888112-9588999998749999999113788521999999999809949-99973899988899743
Q 029661           17 DALRPVTDLPLDVHLMIV-EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA-GVVLNPATSLSAIECVL   94 (190)
Q Consensus        17 ~~i~~~~~~~i~vhlmv~-~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~-gl~i~~~t~~~~~~~~~   94 (190)
                      +.+++ ...++.+-+-+. +-.+.++.+.++|+|.+++..-.+......+.++.+|+..... .++=|..|+ +..+.+.
T Consensus        80 ~~vk~-~~~~v~~~vgv~~~~~e~~~~li~agvd~ivId~A~G~~~~~~~~ik~ik~~~~~~~viaGnV~t~-~~a~~l~  157 (330)
T d1vrda1          80 SIVKK-TRLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATP-EGTEALI  157 (330)
T ss_dssp             HHHHT-CCBCCEEEECSSTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSH-HHHHHHH
T ss_pred             HHHHH-HCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHH-HHHHHHH
T ss_conf             98754-164799998148899999999998799889994688773337799999887589987895030689-9999999


Q ss_pred             C-CCCEEEEEEEECCC---------CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEEC
Q ss_conf             1-13657997330688---------875332245899999999876329998089827889-115899998099799986
Q 029661           95 D-VVDLVLIMSVNPGF---------GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG  163 (190)
Q Consensus        95 ~-~~d~vl~m~v~pG~---------~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvG  163 (190)
                      . -+|.|.+ ++-||.         -|.+.    +.-+.+..+...  ..+.+|.+||||+ ...+.++..+|||.+-+|
T Consensus       158 ~~GaD~v~V-Gig~Gs~ctt~~~~G~g~p~----~sai~~~~~~~~--~~~vpvIAdGGi~~~gdiakAla~GAd~Vm~G  230 (330)
T d1vrda1         158 KAGADAVKV-GVGPGSICTTRVVAGVGVPQ----LTAVMECSEVAR--KYDVPIIADGGIRYSGDIVKALAAGAESVMVG  230 (330)
T ss_dssp             HTTCSEEEE-CSSCSTTCHHHHHHCCCCCH----HHHHHHHHHHHH--TTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             HCCCCEEEE-CCCCCCCCCCCCEECCCCCC----CHHHHHHHHHHH--HCCCEEEECCCCCCCCCHHEEEECCCCEEEEC
T ss_conf             838998840-53267344650133211254----205778999997--55966993277145875310101047634633


Q ss_pred             CCCCCC
Q ss_conf             425698
Q 029661          164 SAVFGA  169 (190)
Q Consensus       164 sai~~~  169 (190)
                      |.+...
T Consensus       231 s~fa~~  236 (330)
T d1vrda1         231 SIFAGT  236 (330)
T ss_dssp             HHHHTB
T ss_pred             CHHEEE
T ss_conf             210011

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=98.13  E-value=1.6e-05  Score=47.92  Aligned_cols=128  Identities=23%  Similarity=0.358  Sum_probs=80.9

Q ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHC-CCCEEEEEEEECCCC--CC
Q ss_conf             88999998749999999113788521999999999809949-999738999888997431-136579973306888--75
Q 029661           37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA-GVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQ  112 (190)
Q Consensus        37 ~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~-gl~i~~~t~~~~~~~~~~-~~d~vl~m~v~pG~~--gq  112 (190)
                      ....+.+.++|+|.+.+....++.....+.++++|+....+ .++=|..|. +....++. -+|.|.+ ++-||-.  .+
T Consensus       153 ~~ra~~L~~aG~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~-e~a~~L~~~GaD~VkV-GiGpGs~CtTr  230 (388)
T d1eepa_         153 IERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTK-EAALDLISVGADCLKV-GIGPGSICTTR  230 (388)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSH-HHHHHHHTTTCSEEEE-CSSCSTTSHHH
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCH-HHHHHHHHCCCCEEEE-CCCCCCCCCCC
T ss_conf             999998775125454310366316779999999998789986650012679-9999998629775543-12223234565


Q ss_pred             C---C-CHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCC
Q ss_conf             3---3-2245899999999876329998089827889-115899998099799986425698
Q 029661          113 S---F-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       113 ~---~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~  169 (190)
                      .   + .|. +.-+.+..+..  .+...+|-+||||+ ...+.++..+|||.+-+||.+-+.
T Consensus       231 ~~~GvG~pq-~sai~~~~~~~--~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~  289 (388)
T d1eepa_         231 IVAGVGVPQ-ITAICDVYEAC--NNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT  289 (388)
T ss_dssp             HHHCCCCCH-HHHHHHHHHHH--TTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTB
T ss_pred             CCCCCCCCH-HHHHHHHHHHH--CCCCCEEEECCCCCCCCCEEEEEEECCCEEECCHHHHCC
T ss_conf             423667423-88999999986--157715785366673773013678515503405365413

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=98.13  E-value=3e-05  Score=46.43  Aligned_cols=149  Identities=18%  Similarity=0.153  Sum_probs=87.5

Q ss_pred             CHHHHHHHCC-CCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf             9888987034-799937888811295889999987499999991137885219999999998099499997389998889
Q 029661           12 GPLVVDALRP-VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI   90 (190)
Q Consensus        12 g~~~i~~i~~-~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~~~   90 (190)
                      ..+.++.+++ .++..+-+-.- .+++ .++.+.++||+.+.-+.-   .   .++++.++++++....-+.  ||-|..
T Consensus        52 a~~~I~~l~~~~p~~~vGaGTV-~~~~-~~~~a~~aGa~FivSP~~---~---~~v~~~a~~~~i~~iPGv~--TpsEi~  121 (212)
T d1vhca_          52 AADAIRLLRANRPDFLIAAGTV-LTAE-QVVLAKSSGADFVVTPGL---N---PKIVKLCQDLNFPITPGVN--NPMAIE  121 (212)
T ss_dssp             HHHHHHHHHHHCTTCEEEEESC-CSHH-HHHHHHHHTCSEEECSSC---C---HHHHHHHHHTTCCEECEEC--SHHHHH
T ss_pred             HHHHHHHHHHCCCCCEEEEEEC-CCHH-HHHHHHHHCCCEEECCCC---C---HHHHHHHHHCCCCCCCCCC--CHHHHH
T ss_conf             8999999986288734766314-6589-999998617868977888---7---9999999855997168868--889999


Q ss_pred             HHHHCCCCEEEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCC-
Q ss_conf             9743113657997330688-87533224589999999987632999808982788911589999809979998642569-
Q 029661           91 ECVLDVVDLVLIMSVNPGF-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG-  168 (190)
Q Consensus        91 ~~~~~~~d~vl~m~v~pG~-~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~iVvGsai~~-  168 (190)
                      .-+-...+.+-+   .|.. -|      -.+.++.++..++    +.++...|||+.+|+.++.++|+...+.||.++. 
T Consensus       122 ~A~~~G~~~vK~---FPA~~~g------G~~~lkal~~p~p----~~~~~ptGGV~~~N~~~yl~~g~v~~~~Gs~l~~~  188 (212)
T d1vhca_         122 IALEMGISAVKF---FPAEASG------GVKMIKALLGPYA----QLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVEK  188 (212)
T ss_dssp             HHHHTTCCEEEE---TTTTTTT------HHHHHHHHHTTTT----TCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGGCH
T ss_pred             HHHHCCCCEEEE---CCCCCCC------HHHHHHHHHCCCC----CCEEEECCCCCHHHHHHHHHCCCEEEEECHHHCCH
T ss_conf             999879997997---5543222------4899998756134----87288538988888999993899799988242797


Q ss_pred             ----CCCHHHHHHHHHHHH
Q ss_conf             ----889999999999710
Q 029661          169 ----AKDYAEAIKGIKTSK  183 (190)
Q Consensus       169 ----~~d~~~~~~~l~~~~  183 (190)
                          ..|+.+..+..++.+
T Consensus       189 ~~i~~~d~~~i~~~a~~~~  207 (212)
T d1vhca_         189 KLIQSNNWDEIGRLVREVI  207 (212)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHH
T ss_conf             7774289999999999999

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.07  E-value=2.3e-05  Score=47.07  Aligned_cols=156  Identities=12%  Similarity=0.156  Sum_probs=96.6

Q ss_pred             HHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECC---------
Q ss_conf             88898703479993788881129588999998749999999113788521999999999809949999738---------
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP---------   83 (190)
Q Consensus        13 ~~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~---------   83 (190)
                      ...++.+.+....|+.+.==+.+ .+.++.+.+.|++.|.+.-.+  ..++...-+..+..|.+..+++..         
T Consensus        63 ~~~i~~i~~~~~~pi~vGGGIrs-~~~~~~ll~~Ga~kVvi~s~~--~~~~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g  139 (239)
T d1vzwa1          63 RALIAEVAQAMDIKVELSGGIRD-DDTLAAALATGCTRVNLGTAA--LETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRG  139 (239)
T ss_dssp             HHHHHHHHHHCSSEEEEESSCCS-HHHHHHHHHTTCSEEEECHHH--HHCHHHHHHHHHHHGGGEEEEEEEETTEECCSS
T ss_pred             HHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHCCCCCCCHHHHHH--HHCCCCCHHHHCCCCCEEEEEECCCEEEECCCC
T ss_conf             89999887640860676300134-301210001266411356776--330110011111577156653011103424766


Q ss_pred             --C---CCHHHHHHHHCC-CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHH--
Q ss_conf             --9---998889974311-3657997330688875332245899999999876329998089827889-115899998--
Q 029661           84 --A---TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE--  154 (190)
Q Consensus        84 --~---t~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~--  154 (190)
                        .   ...+.++++.+. +.-++++.+.--...+.++-..   ++.+++.     .+.++.+.||++ .+.+.++.+  
T Consensus       140 ~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt~~G~d~~l---~~~i~~~-----~~~pvi~sGGv~s~~Di~~l~~l~  211 (239)
T d1vzwa1         140 WTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLEL---LKNVCAA-----TDRPVVASGGVSSLDDLRAIAGLV  211 (239)
T ss_dssp             SCCCCCBHHHHHHHHHHTTCCCEEEEEC-------CCCHHH---HHHHHHT-----CSSCEEEESCCCSHHHHHHHHTTG
T ss_pred             CEEECCCCCHHHHHHHHCCCCEEEEEEECCCCEECCCCCHH---HHHHHHC-----CCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             33301322001134454165189988612354323775021---1011323-----475299977999999999997653


Q ss_pred             -CCCCEEEECCCCCCC-CCHHHHHHHH
Q ss_conf             -099799986425698-8999999999
Q 029661          155 -AGANALVAGSAVFGA-KDYAEAIKGI  179 (190)
Q Consensus       155 -aGad~iVvGsai~~~-~d~~~~~~~l  179 (190)
                       .|++++++||+++.. =+++++.+.+
T Consensus       212 ~~g~~gvivg~al~~g~i~~~e~~~~~  238 (239)
T d1vzwa1         212 PAGVEGAIVGKALYAKAFTLEEALEAT  238 (239)
T ss_dssp             GGTEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred             HCCCCEEEEHHHHHCCCCCHHHHHHHH
T ss_conf             589317657388887998999999864

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=5.5e-06  Score=50.58  Aligned_cols=97  Identities=14%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             CHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHC-CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             219999999998099-49999738999888997431-1365799733068887533224589999999987632999808
Q 029661           61 IHLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI  138 (190)
Q Consensus        61 ~~~~~~i~~i~~~g~-~~gl~i~~~t~~~~~~~~~~-~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i  138 (190)
                      ..+.+.++.+++... ..-+.+..++ .+.+.+.+. .+|.|++-.         |.|..+.   ++.+.+...+..+.+
T Consensus        62 g~~~~~~~~~~~~~~~~~~I~VEv~~-~~e~~~a~~~g~d~i~LDn---------~~pe~~k---~~~~~lk~~~~~i~l  128 (170)
T d1o4ua1          62 GSAERAVQEVRKIIPFTTKIEVEVEN-LEDALRAVEAGADIVMLDN---------LSPEEVK---DISRRIKDINPNVIV  128 (170)
T ss_dssp             SSHHHHHHHHHTTSCTTSCEEEEESS-HHHHHHHHHTTCSEEEEES---------CCHHHHH---HHHHHHHHHCTTSEE
T ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHCCCCEEEECC---------CCHHHHH---HHHHHHHHHCCCEEE
T ss_conf             24788999988517988569997083-9999998845755999857---------5726676---799999860896799


Q ss_pred             EEECCCCCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             98278891158999980997999864256988
Q 029661          139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       139 ~vdGGI~~~~~~~~~~aGad~iVvGsai~~~~  170 (190)
                      ++.|||+++|+.++.+.|+|++.+|+...+++
T Consensus       129 EaSGGI~~~ni~~~a~~GVD~Is~g~lt~~a~  160 (170)
T d1o4ua1         129 EVSGGITEENVSLYDFETVDVISSSRLTLQEV  160 (170)
T ss_dssp             EEEECCCTTTGGGGCCTTCCEEEEGGGTSSCC
T ss_pred             EEECCCCHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf             98789999999999975999998680226998

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.95  E-value=0.00042  Score=39.90  Aligned_cols=168  Identities=15%  Similarity=0.164  Sum_probs=98.4

Q ss_pred             HHHHHCC-CCCCCEEEEEEE-CCHHHHH---HHHHHCCCCEEEECCCCC--------------CCCHHHHHHHHHHHHCC
Q ss_conf             8987034-799937888811-2958899---999874999999911378--------------85219999999998099
Q 029661           15 VVDALRP-VTDLPLDVHLMI-VEPEQRV---PDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDLGA   75 (190)
Q Consensus        15 ~i~~i~~-~~~~~i~vhlmv-~~p~~~i---~~~~~~Gad~i~vh~e~~--------------~~~~~~~~i~~i~~~g~   75 (190)
                      .++.+++ .+..++.+-.+. .++++|.   +.+.++|+|++-++..+-              ..+.+.+.++.+++.-.
T Consensus        92 ~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~  171 (312)
T d1gtea2          92 SVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQ  171 (312)
T ss_dssp             HHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCS
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             20020100124654332233321268899988753577774764168887423332101344569999999998753358


Q ss_pred             CE-EEEECCCCC-HHHHHHHHC--CCCEEEEEEEE------------------------CCCCCCCCCHHHHHHHHHHHH
Q ss_conf             49-999738999-888997431--13657997330------------------------688875332245899999999
Q 029661           76 KA-GVVLNPATS-LSAIECVLD--VVDLVLIMSVN------------------------PGFGGQSFIESQVKKISDLRR  127 (190)
Q Consensus        76 ~~-gl~i~~~t~-~~~~~~~~~--~~d~vl~m~v~------------------------pG~~gq~~~~~~~~ki~~~~~  127 (190)
                      .+ .+-+.|..+ ...+.+.+.  .+|.+.+....                        -|..|....|.+++-++++++
T Consensus       172 ~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~  251 (312)
T d1gtea2         172 IPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIAR  251 (312)
T ss_dssp             SCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHH
T ss_pred             CCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             86563246430048999999987355614999613452110245540244442012245654675750345999999999


Q ss_pred             HHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCC-CC-HHHHHHHHHHHHCCC
Q ss_conf             876329998089827889-115899998099799986425698-89-999999999710313
Q 029661          128 MCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KD-YAEAIKGIKTSKRPQ  186 (190)
Q Consensus       128 ~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~-~d-~~~~~~~l~~~~~~~  186 (190)
                      ...    +++|...|||+ .+++.+++.+|||.+=+||+++.. ++ .++..+.|++.++.+
T Consensus       252 ~~~----~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~G~~~i~~i~~~L~~~m~~~  309 (312)
T d1gtea2         252 ALP----GFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLK  309 (312)
T ss_dssp             HST----TCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHHT
T ss_pred             HCC----CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf             748----9839998687999999999983999047778666159199999999999999972

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.95  E-value=0.00023  Score=41.40  Aligned_cols=132  Identities=24%  Similarity=0.339  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHC-CCCEEEEEEEECCCC--C
Q ss_conf             58899999874999999911378852199999999980994-9999738999888997431-136579973306888--7
Q 029661           36 PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK-AGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--G  111 (190)
Q Consensus        36 p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~-~gl~i~~~t~~~~~~~~~~-~~d~vl~m~v~pG~~--g  111 (190)
                      ....++.+.++|+|.+++....+......+.++.+|+.... +.++=|..|+ +....++. -+|.|.+ ++-||-.  .
T Consensus       108 ~~er~~~l~~agvd~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~-e~a~~L~~aGaD~VkV-GiG~Gs~CTT  185 (365)
T d1zfja1         108 TFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATA-EGARALYDAGVDVVKV-GIGPGSICTT  185 (365)
T ss_dssp             HHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSH-HHHHHHHHTTCSEEEE-CSSCCTTBCH
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCH-HHHHHHHHCCCCEEEE-EECCCCCCCC
T ss_conf             7789999998699889997886554321478899986588764441134348-9999998669763786-4025644567


Q ss_pred             C---CC-CHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCC-CCH
Q ss_conf             5---33-2245899999999876329998089827889-115899998099799986425698-899
Q 029661          112 Q---SF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDY  172 (190)
Q Consensus       112 q---~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~-~d~  172 (190)
                      .   .+ .|. +.-+.+......+  .+.+|-+||||+ ...+.+++.+|||.+-+||.+-+. +.|
T Consensus       186 r~~tGvGvPq-~sai~~~~~~~~~--~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~EsP  249 (365)
T d1zfja1         186 RVVAGVGVPQ-VTAIYDAAAVARE--YGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAP  249 (365)
T ss_dssp             HHHTCCCCCH-HHHHHHHHHHHHH--TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCC
T ss_pred             CCEEEEECCC-HHHHHHHHHHHHH--CCCEEEECCCCCCCHHHHHHHHCCCCEEEECCHHCCCCCCC
T ss_conf             6301342242-1389999999975--79569805884762066655321587898642210466789

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.87  E-value=0.00044  Score=39.83  Aligned_cols=128  Identities=17%  Similarity=0.178  Sum_probs=80.5

Q ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHH-CCCCEEEEEEEECCCCCCC-
Q ss_conf             88999998749999999113788521999999999809949-99973899988899743-1136579973306888753-
Q 029661           37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA-GVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQS-  113 (190)
Q Consensus        37 ~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~-gl~i~~~t~~~~~~~~~-~~~d~vl~m~v~pG~~gq~-  113 (190)
                      ...++.+.++|+|.++++.-.+......+.++.+++..... .++=|..|+- ....+. .-+|.|.+ ++-||-. -. 
T Consensus       121 ~~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e-~a~~L~~aGAD~VkV-GiG~Gs~-ctT  197 (378)
T d1jr1a1         121 KYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAA-QAKNLIDAGVDALRV-GMGCGSI-CIT  197 (378)
T ss_dssp             HHHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTTCEEEEEEECSHH-HHHHHHHHTCSEEEE-CSSCSTT-BCH
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHH-HHHHHHHHCCCEEEE-CCCCCCC-CCC
T ss_conf             9999999751555576403676202357999999987899725302201299-999999829997860-3313544-445


Q ss_pred             -----CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCC
Q ss_conf             -----32245899999999876329998089827889-115899998099799986425698
Q 029661          114 -----FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       114 -----~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~  169 (190)
                           +..-.+.-+........+  .+.+|-+||||+ ...+.++..+|||.+-+||.+...
T Consensus       198 r~~tGvG~pq~sai~~~~~~a~~--~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt  257 (378)
T d1jr1a1         198 QEVLACGRPQATAVYKVSEYARR--FGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAAT  257 (378)
T ss_dssp             HHHHCCCCCHHHHHHHHHHHHGG--GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCC--CCCCEECCCCCCCCCCEEEEEEEECCEEEECCEEEEE
T ss_conf             42223476652025678875115--6985342533354773246888605435532321342

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=97.80  E-value=0.00014  Score=42.64  Aligned_cols=122  Identities=13%  Similarity=0.050  Sum_probs=64.0

Q ss_pred             HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCHH-H
Q ss_conf             999987499999991137885219999999998099499997389998889974311365799733068887533224-5
Q 029661           40 VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES-Q  118 (190)
Q Consensus        40 i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~-~  118 (190)
                      ++.+.++|++++.-+.-      -.+++++++++|+-...-+.  ||-|...-+            +-|....++=|. .
T Consensus        82 ~~~a~~aGa~FivsP~~------~~~v~~~a~~~~i~~iPGv~--TpsEi~~A~------------~~G~~~vKlFPA~~  141 (216)
T d1mxsa_          82 FAAVEAAGAQFVVTPGI------TEDILEAGVDSEIPLLPGIS--TPSEIMMGY------------ALGYRRFKLFPAEI  141 (216)
T ss_dssp             HHHHHHHTCSSEECSSC------CHHHHHHHHHCSSCEECEEC--SHHHHHHHH------------TTTCCEEEETTHHH
T ss_pred             HHHHHHCCCCEEECCCC------CHHHHHHHHHCCCCCCCCCC--CHHHHHHHH------------HCCCCEEEECCCCC
T ss_conf             99998679989978998------49999999865998648849--889999999------------87999788515322


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCC-----CCCHHHHHHHHHHH
Q ss_conf             89999999987632999808982788911589999809979998642569-----88999999999971
Q 029661          119 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG-----AKDYAEAIKGIKTS  182 (190)
Q Consensus       119 ~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~iVvGsai~~-----~~d~~~~~~~l~~~  182 (190)
                      ......++.+..-. .+.++...|||+.+|+.++.++|+-..+.||.++.     ..|+.+-.+..++.
T Consensus       142 ~~g~~~ikal~~p~-p~~~fiptGGV~~~n~~~yl~~~~v~avggs~l~~~~~i~~~d~~~i~~~a~~~  209 (216)
T d1mxsa_         142 SGGVAAIKAFGGPF-GDIRFCPTGGVNPANVRNYMALPNVMCVGTTWMLDSSWIKNGDWARIEACSAEA  209 (216)
T ss_dssp             HTHHHHHHHHHTTT-TTCEEEEBSSCCTTTHHHHHHSTTBCCEEECTTSCHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCC-CCCCEECCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHH
T ss_conf             36099999874512-468462138988888999995689299985554898885068999999999999

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.77  E-value=0.00011  Score=43.32  Aligned_cols=133  Identities=17%  Similarity=0.121  Sum_probs=82.3

Q ss_pred             HHHHHCC--CCEEEECCCC--CC-CCHHHHHHHHHHH---HCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEEEECCCCC
Q ss_conf             9998749--9999991137--88-5219999999998---09949999738999888997431-1365799733068887
Q 029661           41 PDFIKAG--ADIVSVHCEQ--SS-TIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGG  111 (190)
Q Consensus        41 ~~~~~~G--ad~i~vh~e~--~~-~~~~~~~i~~i~~---~g~~~gl~i~~~t~~~~~~~~~~-~~d~vl~m~v~pG~~g  111 (190)
                      +...+++  -+++-+-.-.  .. ..++.++++.++.   .|..+...++ ..++ ..+++.+ -...++-++-..| +|
T Consensus        86 ~larE~~~~~~~iKLEVi~d~~~L~Pd~~etl~Aa~~Lv~egF~Vlpy~~-~D~v-~ak~le~~Gc~~vMplgsPIG-sg  162 (243)
T d1wv2a_          86 RLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTS-DDPI-IARQLAEIGCIAVMPLAGLIG-SG  162 (243)
T ss_dssp             HHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEEC-SCHH-HHHHHHHSCCSEEEECSSSTT-CC
T ss_pred             HHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCC-CCHH-HHHHHHHCCCEEEEECCCCCC-CC
T ss_conf             99999707982578765156434488588889988876137667875068-7889-876788717504663265222-46


Q ss_pred             CCC-CHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             533-2245899999999876329998089827889-115899998099799986425698899999999997103
Q 029661          112 QSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       112 q~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      |.. .+..+   +.+++.     .+.++-+|.||. +.++.+..+.|+|++-+.|+|+++.||.+.++.++..++
T Consensus       163 ~Gi~n~~~l---~~i~~~-----~~vpvivdAGIg~psdaa~AMElG~dgVLvnsaIa~A~dP~~mA~A~~~Av~  229 (243)
T d1wv2a_         163 LGICNPYNL---RIILEE-----AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV  229 (243)
T ss_dssp             CCCSCHHHH---HHHHHH-----CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHH---HHCCCC-----CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
T ss_conf             320367888---760015-----7833685246687777999997459899865476638999999999999999

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=97.76  E-value=2.4e-05  Score=46.98  Aligned_cols=159  Identities=14%  Similarity=0.165  Sum_probs=93.2

Q ss_pred             HHHHHHHCCCCCCCEEEEEEECCH----------HHHHHHHHHCCCCEEEECCCCCCCC-------------HHHHHHHH
Q ss_conf             888987034799937888811295----------8899999874999999911378852-------------19999999
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEP----------EQRVPDFIKAGADIVSVHCEQSSTI-------------HLHRTLNQ   69 (190)
Q Consensus        13 ~~~i~~i~~~~~~~i~vhlmv~~p----------~~~i~~~~~~Gad~i~vh~e~~~~~-------------~~~~~i~~   69 (190)
                      .+.++.+.+.+..|+.+===+.+.          .+..+.+.++|||-|.+.-.+  ..             ++.-+-+.
T Consensus        84 ~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~GadKVvI~T~a--i~~p~~~~e~~~~~~n~~li~~i  161 (323)
T d1jvna1          84 LEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDA--VYAAEKYYELGNRGDGTSPIETI  161 (323)
T ss_dssp             HHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHH--HHHHHHHHHTTSCCCSCSHHHHH
T ss_pred             HHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEEECHHH--HHCHHHHHHHHHHCCCCHHHHHH
T ss_conf             9999863025664699845746388853100002689999997498768725377--60847778877503431159999


Q ss_pred             HHHHCCC-EEEEECCC-------------------------------------------CCHHHHHHHHCC-CCEEEEEE
Q ss_conf             9980994-99997389-------------------------------------------998889974311-36579973
Q 029661           70 IKDLGAK-AGVVLNPA-------------------------------------------TSLSAIECVLDV-VDLVLIMS  104 (190)
Q Consensus        70 i~~~g~~-~gl~i~~~-------------------------------------------t~~~~~~~~~~~-~d~vl~m~  104 (190)
                      ++..|.. +.+++...                                           ...+++..+.+. +.-+++-+
T Consensus       162 ~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIlltd  241 (323)
T d1jvna1         162 SKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNC  241 (323)
T ss_dssp             HHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECC
T ss_pred             HHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf             99739840899999874256654433333111234567776540499997098573273388776554125742367775


Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHH-HHCCCCEEEECCCCC-CCCCHHHHHHHHHH
Q ss_conf             30688875332245899999999876329998089827889-1158999-980997999864256-98899999999997
Q 029661          105 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKV-IEAGANALVAGSAVF-GAKDYAEAIKGIKT  181 (190)
Q Consensus       105 v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~-~~aGad~iVvGsai~-~~~d~~~~~~~l~~  181 (190)
                      ++--...+.+.   ++.++++++..     +.++-+-||++ .+++.++ ...+++++++||++. +.-++.+.-+.|++
T Consensus       242 IdrDGt~~G~D---~el~~~i~~~~-----~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~~~~si~elK~~L~~  313 (323)
T d1jvna1         242 IDKDGSNSGYD---LELIEHVKDAV-----KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLE  313 (323)
T ss_dssp             GGGTTTCSCCC---HHHHHHHHHHC-----SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHH
T ss_pred             ECCCCCCCCCC---HHHHHHHHHHC-----CCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHHHHHHHH
T ss_conf             13665534311---16789999748-----98999989999999999999868984997803777699899999999998

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=97.75  E-value=0.00056  Score=39.20  Aligned_cols=140  Identities=19%  Similarity=0.262  Sum_probs=85.2

Q ss_pred             CEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH-HCC-CEEEEECCCCCHHHHHHHHC-CCCEEEE
Q ss_conf             37888811295889999987499999991137885219999999998-099-49999738999888997431-1365799
Q 029661           26 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-LGA-KAGVVLNPATSLSAIECVLD-VVDLVLI  102 (190)
Q Consensus        26 ~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~-~g~-~~gl~i~~~t~~~~~~~~~~-~~d~vl~  102 (190)
                      ....-....+....++.+.++|+|.+++-.-.+......+.++.+++ ... .+.++=|..|+ +..+.+++ -+|.|.+
T Consensus       101 ~~~~~~~~~~~~~~~~~L~~ag~d~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAGNVaT~-e~~~~L~~aGaD~vkV  179 (362)
T d1pvna1         101 LVGAGINTRDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDG-EGFRYLADAGADFIKI  179 (362)
T ss_dssp             CCEEEECSSSHHHHHHHHHHHTCSEEEECCSCCCBHHHHHHHHHHHHHHGGGSCEEEEEECSH-HHHHHHHHHTCSEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEEECHHCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCH-HHHHHHHHHCCCEEEE
T ss_conf             221211013567777777641854775300001015788999999886533103421244678-8999999729757984


Q ss_pred             EEEECC----------CCCCCCCHHHHHHHHHHH-HHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCC
Q ss_conf             733068----------887533224589999999-9876329998089827889-115899998099799986425698
Q 029661          103 MSVNPG----------FGGQSFIESQVKKISDLR-RMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       103 m~v~pG----------~~gq~~~~~~~~ki~~~~-~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~  169 (190)
                       ++=||          .+ -|. ...+..+...+ ++..+.+...+|.+||||+ ...+.++..+|||.+-+||.+-+.
T Consensus       180 -GIG~Gs~CTTr~~tGvG-~Pq-~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~  255 (362)
T d1pvna1         180 -GIGGGSICITREQKGIG-RGQ-ATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARF  255 (362)
T ss_dssp             -CSSCSTTBCHHHHTCBC-CCH-HHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTB
T ss_pred             -CCCCCCCCCCHHHHCCC-CCH-HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEEECCCEEEHHHHHCC
T ss_conf             -43034343436555037-716-77999999999875332036875353323474662357888713400211154055

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=97.72  E-value=0.00012  Score=42.97  Aligned_cols=141  Identities=16%  Similarity=0.209  Sum_probs=84.3

Q ss_pred             CCCHHHHHHHCCCCCCCEEEEEEEC-CH-------------HHHHHHHHHCCCCEEEECCCCCC-CCH---HHHHHHHHH
Q ss_conf             7798889870347999378888112-95-------------88999998749999999113788-521---999999999
Q 029661           10 TIGPLVVDALRPVTDLPLDVHLMIV-EP-------------EQRVPDFIKAGADIVSVHCEQSS-TIH---LHRTLNQIK   71 (190)
Q Consensus        10 ~~g~~~i~~i~~~~~~~i~vhlmv~-~p-------------~~~i~~~~~~Gad~i~vh~e~~~-~~~---~~~~i~~i~   71 (190)
                      |=++..++.+++..++|+.+  |+. +.             .+-++.+.+.|+|++.|..-... .-+   ..+.++.++
T Consensus        36 TPS~g~i~~~~~~~~iPv~v--MIRPR~GdF~Ys~~E~~~M~~di~~~k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~a~  113 (247)
T d1twda_          36 TPSLGVLKSVRQRVTIPVHP--IIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAG  113 (247)
T ss_dssp             CCCHHHHHHHHHHCCSCEEE--BCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHCCCCEEE--EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             99999999999864997279--9704899887898999999999999998599868997888988814999999999963


Q ss_pred             HHCCCEEE--EECC-CCCHHHHHHHHCC-CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             80994999--9738-9998889974311-365799733068887533224589999999987632999808982788911
Q 029661           72 DLGAKAGV--VLNP-ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK  147 (190)
Q Consensus        72 ~~g~~~gl--~i~~-~t~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~  147 (190)
                        ++.+-+  ++.. ..+.+.++.++.. ++.||-    -|  |.+-...-++.++++.+   .. .+..|.+.||||.+
T Consensus       114 --~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILT----SG--g~~~a~~G~~~L~~L~~---~a-~~~iIm~GgGI~~~  181 (247)
T d1twda_         114 --PLAVTFHRAFDMCANPLYTLNNLAELGIARVLT----SG--QKSDALQGLSKIMELIA---HR-DAPIIMAGAGVRAE  181 (247)
T ss_dssp             --TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEE----CT--TSSSTTTTHHHHHHHHT---SS-SCCEEEEESSCCTT
T ss_pred             --CCCEEEEHHHHHHCCHHHHHHHHHHCCCCEEEC----CC--CCCCHHHHHHHHHHHHH---HC-CCCEEEECCCCCHH
T ss_conf             --367253002465289999999997669786751----57--98865677999999998---36-99689954878989


Q ss_pred             CHHHHHHCCCCEEEECC
Q ss_conf             58999980997999864
Q 029661          148 NAYKVIEAGANALVAGS  164 (190)
Q Consensus       148 ~~~~~~~aGad~iVvGs  164 (190)
                      |++.+.++|++-+=.+.
T Consensus       182 Ni~~l~~~g~~e~H~sa  198 (247)
T d1twda_         182 NLHHFLDAGVLEVHSSA  198 (247)
T ss_dssp             THHHHHHHTCSEEEECC
T ss_pred             HHHHHHHCCCCEEEECC
T ss_conf             99999976998798788

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.70  E-value=0.0012  Score=37.42  Aligned_cols=166  Identities=18%  Similarity=0.272  Sum_probs=97.1

Q ss_pred             HHHHCCCCCCCEEEEEEECCHHHHHHH------HHHCCCCEEEECCCCC----------CCCHHHHHHHHHHHH-CCCEE
Q ss_conf             987034799937888811295889999------9874999999911378----------852199999999980-99499
Q 029661           16 VDALRPVTDLPLDVHLMIVEPEQRVPD------FIKAGADIVSVHCEQS----------STIHLHRTLNQIKDL-GAKAG   78 (190)
Q Consensus        16 i~~i~~~~~~~i~vhlmv~~p~~~i~~------~~~~Gad~i~vh~e~~----------~~~~~~~~i~~i~~~-g~~~g   78 (190)
                      ++..++..++|+.+-+.......+.+.      ..+.++|++.+-..+-          ..+...+.++.+++. +..+.
T Consensus        83 l~~~~~~~~~pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~pi~  162 (312)
T d2b4ga1          83 AAQTHDYSRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVPGKPQVGYDFDTTRTYLQKVSEAYGLPFG  162 (312)
T ss_dssp             HHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGCHHHHHHHHHHHHHHHCSCEE
T ss_pred             HHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCE
T ss_conf             77752035541101323553321899999987765302651232034678676113220489999999986302556410


Q ss_pred             EEECCCCCHHHHHHH---HCC---CCEEEE-------EEEE--------------CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             997389998889974---311---365799-------7330--------------6888753322458999999998763
Q 029661           79 VVLNPATSLSAIECV---LDV---VDLVLI-------MSVN--------------PGFGGQSFIESQVKKISDLRRMCLE  131 (190)
Q Consensus        79 l~i~~~t~~~~~~~~---~~~---~d~vl~-------m~v~--------------pG~~gq~~~~~~~~ki~~~~~~~~~  131 (190)
                      +-+.|......+...   +..   ++.+..       +.+.              -|..|.+..|..++.+.++++... 
T Consensus       163 vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~~~~~~-  241 (312)
T d2b4ga1         163 VKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCP-  241 (312)
T ss_dssp             EEECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEEEGGGHHHHHHHHHHHHHHCT-
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-
T ss_conf             0124334366799999998752123445430344565201025777533464334576544434023399999999758-


Q ss_pred             CCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCC-CCC-CHHHHHHHHHHHHCC
Q ss_conf             29998089827889-1158999980997999864256-988-999999999971031
Q 029661          132 KGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF-GAK-DYAEAIKGIKTSKRP  185 (190)
Q Consensus       132 ~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~-~~~-d~~~~~~~l~~~~~~  185 (190)
                         +..|..-|||. .+++.+.+.+||+.+=++|+++ +.+ -..+..+.|.+.++.
T Consensus       242 ---~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i~~i~~~L~~~l~~  295 (312)
T d2b4ga1         242 ---DKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEGPIIFARLNKELQEIMTN  295 (312)
T ss_dssp             ---TSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             ---CCCEEECCCCCCHHHHHHHHHCCCCHHEEEHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             ---870664578478999999998499850441556740918999999999999998

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.69  E-value=4.3e-05  Score=45.50  Aligned_cols=94  Identities=15%  Similarity=0.248  Sum_probs=61.0

Q ss_pred             CCCHHHHHHHHCC-CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEE
Q ss_conf             9998889974311-3657997330688875332245899999999876329998089827889-1158999980997999
Q 029661           84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV  161 (190)
Q Consensus        84 ~t~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iV  161 (190)
                      ..|++..+.|... +|.+.+........+.   +..++.++++.+.     ...+++++|||+ .+.+..+..+||+-+|
T Consensus        30 gdP~~~a~~~~~~g~dei~ivDld~~~~~~---~~~~~~i~~i~~~-----~~~pi~vgGGIr~~e~i~~~l~~Ga~kvi  101 (253)
T d1thfd_          30 GDPVELGKFYSEIGIDELVFLDITASVEKR---KTMLELVEKVAEQ-----IDIPFTVGGGIHDFETASELILRGADKVS  101 (253)
T ss_dssp             TCHHHHHHHHHHTTCCEEEEEESSCSSSHH---HHHHHHHHHHHTT-----CCSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHHCCCCEEEEEEECCCCCCC---CCHHHHHHHHHHC-----CCCCCEEECCCCCCHHHHHHHHCCCCEEE
T ss_conf             899999999998699989997521322476---3479999999841-----57300243030001244667862898999


Q ss_pred             ECCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             864256988999999999971031332
Q 029661          162 AGSAVFGAKDYAEAIKGIKTSKRPQAV  188 (190)
Q Consensus       162 vGsai~~~~d~~~~~~~l~~~~~~~~~  188 (190)
                      +||+.++.+  . .++++.+....|.+
T Consensus       102 igs~~~~n~--~-~l~~~~~~~G~~~i  125 (253)
T d1thfd_         102 INTAAVENP--S-LITQIAQTFGSQAV  125 (253)
T ss_dssp             ESHHHHHCT--H-HHHHHHHHHCGGGE
T ss_pred             ECHHHHHCH--H-HHHHHHHHCCCEEE
T ss_conf             874885094--9-99989998098149

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=97.68  E-value=0.00017  Score=42.17  Aligned_cols=135  Identities=19%  Similarity=0.148  Sum_probs=88.0

Q ss_pred             HHHHHHC-CCCEEEECCCC--CC-CCHHHHHHHHHHH---HCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEEEECCCCC
Q ss_conf             9999874-99999991137--88-5219999999998---09949999738999888997431-1365799733068887
Q 029661           40 VPDFIKA-GADIVSVHCEQ--SS-TIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGG  111 (190)
Q Consensus        40 i~~~~~~-Gad~i~vh~e~--~~-~~~~~~~i~~i~~---~g~~~gl~i~~~t~~~~~~~~~~-~~d~vl~m~v~pG~~g  111 (190)
                      .+...++ |-|+|-+-.-.  .. ..++.++++.++.   .|..+..-++ .+|+ ..+++.+ -..-|+-++-..|.+-
T Consensus        84 A~lARE~~~t~~IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlpY~~-~D~v-~ak~Le~~Gc~avMPlgsPIGSg~  161 (251)
T d1xm3a_          84 ARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTS-DDVV-LARKLEELGVHAIMPGASPIGSGQ  161 (251)
T ss_dssp             HHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEEC-SCHH-HHHHHHHHTCSCBEECSSSTTCCC
T ss_pred             HHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC-CCHH-HHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf             99999815896689997348877688877999999999868967999617-8989-999998748713887664541488


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             5332245899999999876329998089827889-115899998099799986425698899999999997103
Q 029661          112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       112 q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      ...++..++   .+++.     .+.++-||.||. +.++.++-+.|+|.+-+.|+|.++.||...++.++..+.
T Consensus       162 Gl~n~~~l~---~i~~~-----~~vPvIvDAGIG~pSdAa~AMElG~daVLvNTAIA~a~dPv~MA~A~~~Av~  227 (251)
T d1xm3a_         162 GILNPLNLS---FIIEQ-----AKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVE  227 (251)
T ss_dssp             CCSCHHHHH---HHHHH-----CSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHH---HHHHC-----CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
T ss_conf             757867999---99861-----8966897358898899999997039999944365618998999999999999

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=97.67  E-value=9.2e-06  Score=49.30  Aligned_cols=45  Identities=24%  Similarity=0.432  Sum_probs=35.1

Q ss_pred             CCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             998089827889-115899998099799986425698899999999997
Q 029661          134 VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT  181 (190)
Q Consensus       134 ~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~~d~~~~~~~l~~  181 (190)
                      .+.++.|+|||+ +++++++. ++||++|+||+|.+  ++++..+.++.
T Consensus       180 ~~~Pl~VGFGIst~e~a~~v~-~~ADgVVVGSAiv~--~ie~~~~~~~a  225 (229)
T d1viza_         180 ETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE--DFDRALKTVAA  225 (229)
T ss_dssp             SSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH--CHHHHHTHHHH
T ss_pred             CCCCEEEECCCCCHHHHHHHH-CCCCEEEECHHHHH--HHHHHHHHHHH
T ss_conf             576247871639999999998-47999999979982--39999999998

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.67  E-value=0.00021  Score=41.65  Aligned_cols=51  Identities=22%  Similarity=0.354  Sum_probs=45.0

Q ss_pred             CCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             998089827889-115899998099799986425698899999999997103
Q 029661          134 VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       134 ~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      ...++-+||||. +......-+.|+|++-+||+||+++||.+.++.+.....
T Consensus       188 l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s~dP~~~a~A~~~Avt  239 (254)
T d1znna1         188 LPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATT  239 (254)
T ss_dssp             CSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCHHHHHHHHHHHHH
T ss_conf             7841771278787456999997379889875043048999999999999997

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.62  E-value=7.2e-05  Score=44.26  Aligned_cols=153  Identities=10%  Similarity=0.068  Sum_probs=90.8

Q ss_pred             HHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEC-----------
Q ss_conf             889870347999378888112958899999874999999911378852199999999980994999973-----------
Q 029661           14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN-----------   82 (190)
Q Consensus        14 ~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~-----------   82 (190)
                      ..++.+++.. .|+.+-==+.+ ...++.+.+.|+|.|.+.-..  ..++ ..++.+.+.+.+..+.+.           
T Consensus        64 ~~~~~~~~~~-~pl~~gGGI~s-~~~~~~~~~~Ga~kVvi~s~~--~~~~-~~~~~~~~~~~~~~v~iD~~~~~~~~~g~  138 (241)
T d1qo2a_          64 PVLEKLSEFA-EHIQIGGGIRS-LDYAEKLRKLGYRRQIVSSKV--LEDP-SFLKSLREIDVEPVFSLDTRGGRVAFKGW  138 (241)
T ss_dssp             HHHHHGGGGG-GGEEEESSCCS-HHHHHHHHHTTCCEEEECHHH--HHCT-THHHHHHTTTCEEEEEEEEETTEECCTTC
T ss_pred             HHEEHHCCCC-CCHHHHHHHHH-HHHHHHCCCCCCCEEECCCCC--CCCC-HHHHHHCCCCCCEEEECCCCCCCCCCCCC
T ss_conf             2100001355-64353232100-000111123333268427523--3571-22122203565214402221243223676


Q ss_pred             ---CC-CCHHHHHHHHCC-CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCC
Q ss_conf             ---89-998889974311-3657997330688875332245899999999876329998089827889-11589999809
Q 029661           83 ---PA-TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG  156 (190)
Q Consensus        83 ---~~-t~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aG  156 (190)
                         .. .+.++++.+.+. +.-+++++++--...+.++-..++   ++++..     +.++.+.||++ .+.+.++.+.|
T Consensus       139 ~~~~~~~~~~~~~~~~~~g~~eii~~dId~dGt~~G~d~~l~~---~i~~~~-----~~pvi~~GGv~s~~di~~l~~ig  210 (241)
T d1qo2a_         139 LAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTK---KIAIEA-----EVKVLAAGGISSENSLKTAQKVH  210 (241)
T ss_dssp             SSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCCCHHHHH---HHHHHH-----TCEEEEESSCCSHHHHHHHHHHH
T ss_pred             CCCEEEEHHHHHHHHHCCCCCEEEEEEHHHHHHCCCCCHHHHH---HHHCCC-----CCEEEEECCCCCHHHHHHHHHCC
T ss_conf             3220331147788754125543887431344430342113445---553258-----96499988999999999999736


Q ss_pred             ------CCEEEECCCCCCCC-CHHHHHHHH
Q ss_conf             ------97999864256988-999999999
Q 029661          157 ------ANALVAGSAVFGAK-DYAEAIKGI  179 (190)
Q Consensus       157 ------ad~iVvGsai~~~~-d~~~~~~~l  179 (190)
                            ++++++||+++... ++++.-+.|
T Consensus       211 ~~~~~~~~gvivG~al~~g~l~~~~~k~~l  240 (241)
T d1qo2a_         211 TETNGLLKGVIVGRAFLEGILTVEVMKRYA  240 (241)
T ss_dssp             HHTTTSEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred             CCCCCCEEEEEEHHHHHCCCCCHHHHHHHH
T ss_conf             554587816778779888998999999975

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=97.59  E-value=9.8e-05  Score=43.49  Aligned_cols=129  Identities=19%  Similarity=0.175  Sum_probs=81.2

Q ss_pred             HHHHHHCCCCEEEECCCCCC------CCHHHHHHHHHHHHCCCEEEEECCC-------CCHHHHHHHH----CC-CCEEE
Q ss_conf             99998749999999113788------5219999999998099499997389-------9988899743----11-36579
Q 029661           40 VPDFIKAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLNPA-------TSLSAIECVL----DV-VDLVL  101 (190)
Q Consensus        40 i~~~~~~Gad~i~vh~e~~~------~~~~~~~i~~i~~~g~~~gl~i~~~-------t~~~~~~~~~----~~-~d~vl  101 (190)
                      ++...+.|+|.|.++.-.++      .+++.++.++++++|+-..+...|-       +..+.+....    ++ +|.+-
T Consensus        96 ve~a~rlGadaV~~~v~~g~~~e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK  175 (251)
T d1ojxa_          96 VEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMK  175 (251)
T ss_dssp             HHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHCHHCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf             99998330145899973799836999999999999999809918999750587545677889999999999986898898


Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-------CHHHHHHCCCCEEEECCCCCCCCCHHH
Q ss_conf             9733068887533224589999999987632999808982788911-------589999809979998642569889999
Q 029661          102 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-------NAYKVIEAGANALVAGSAVFGAKDYAE  174 (190)
Q Consensus       102 ~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~-------~~~~~~~aGad~iVvGsai~~~~d~~~  174 (190)
                      +  -.||.      ...+   .++....    ...++.+-||-...       .++.+.++|+.++++||.+|+++||.+
T Consensus       176 ~--~~p~~------~~~~---~~~v~~a----~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~~p~~  240 (251)
T d1ojxa_         176 I--KYTGD------PKTF---SWAVKVA----GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALK  240 (251)
T ss_dssp             E--CCCSS------HHHH---HHHHHHT----TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHH
T ss_pred             E--CCCCC------HHHH---HHHHHHC----CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHCCCCHHH
T ss_conf             3--48985------7889---9998713----787657867998889999999999999879918852645457576999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999710
Q 029661          175 AIKGIKTSK  183 (190)
Q Consensus       175 ~~~~l~~~~  183 (190)
                      .++.++..+
T Consensus       241 ~~~al~~iv  249 (251)
T d1ojxa_         241 FARALAELV  249 (251)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999984

>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Pyridoxine 5'-phosphate synthase
family: Pyridoxine 5'-phosphate synthase
domain: Pyridoxine 5'-phosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=0.0014  Score=36.97  Aligned_cols=166  Identities=12%  Similarity=0.158  Sum_probs=108.3

Q ss_pred             HHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCC-------------CCHHHHHHHHHHHHCCCEEE
Q ss_conf             88898703479993788881129588999998749999999113788-------------52199999999980994999
Q 029661           13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS-------------TIHLHRTLNQIKDLGAKAGV   79 (190)
Q Consensus        13 ~~~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~-------------~~~~~~~i~~i~~~g~~~gl   79 (190)
                      ...+..|++..+.++..-  ..--..+++.+.+...+.+|+-+|.-.             ...+..+++.+++.|+++.+
T Consensus        54 ~~Dv~~l~~~~~~~lNlE--~a~~~e~i~ia~~~kP~qvtLVPe~r~elTTegGld~~~~~~~L~~~i~~l~~~girvSL  131 (242)
T d1m5wa_          54 DRDVRILRQTLDTRMNLE--MAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSL  131 (242)
T ss_dssp             HHHHHHHHHHCSSEEEEE--ECSSHHHHHHHHHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             588999988752012545--334224899998716322788625755557677552021588999999999866970799


Q ss_pred             EECCCCC-HHHHHHHHCCCCEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCC-
Q ss_conf             9738999-8889974311365799733068-887533224589999999987632999808982788911589999809-
Q 029661           80 VLNPATS-LSAIECVLDVVDLVLIMSVNPG-FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-  156 (190)
Q Consensus        80 ~i~~~t~-~~~~~~~~~~~d~vl~m~v~pG-~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aG-  156 (190)
                      ++.|+-. ++...++  .+|.|-+.+-.-. ...+.-....++++++...+..+  .+..+.++=|+|.+|++.+.+.. 
T Consensus       132 FiDpd~~~i~~a~~l--Gad~IElhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~--lGL~VnAGHgLn~~Nl~~i~~ip~  207 (242)
T d1m5wa_         132 FIDADEEQIKAAAEV--GAPFIEIHTGCYADAKTDAEQAQELARIAKAATFAAS--LGLKVNAGHGLTYHNVKAIAAIPE  207 (242)
T ss_dssp             EECSCHHHHHHHHHT--TCSEEEEECHHHHHCCSHHHHHHHHHHHHHHHHHHHH--TTCEEEEESSCCTTTHHHHHTCTT
T ss_pred             EECCCHHHHHHHHHC--CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCCCHHHHHCCCC
T ss_conf             944524657788642--7663553202110235410257789999999999986--688555898867200599844899


Q ss_pred             CCEEEECCCCCCC---CCHHHHHHHHHHHHC
Q ss_conf             9799986425698---899999999997103
Q 029661          157 ANALVAGSAVFGA---KDYAEAIKGIKTSKR  184 (190)
Q Consensus       157 ad~iVvGsai~~~---~d~~~~~~~l~~~~~  184 (190)
                      .+-+-+|-+|+..   -..+++++++++.++
T Consensus       208 i~EvsIGHaiI~eal~~Gl~~aV~~~~~ii~  238 (242)
T d1m5wa_         208 MHELNIGHAIIGRAVMTGLKDAVAEMKRLML  238 (242)
T ss_dssp             EEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7688456999999999719999999999998

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.56  E-value=0.0018  Score=36.29  Aligned_cols=127  Identities=21%  Similarity=0.335  Sum_probs=78.9

Q ss_pred             HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEEECCCCC--C---
Q ss_conf             89999987499999991137885219999999998099499997389998889974311365799733068887--5---
Q 029661           38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG--Q---  112 (190)
Q Consensus        38 ~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~~~~~~~~~~d~vl~m~v~pG~~g--q---  112 (190)
                      .....+.++|+|.+.+....+........++++++.--.+.++=|..|+--. .. +..+|.|-+ ++-||-.-  +   
T Consensus       119 ~r~~~l~~aGvd~ivID~A~Gh~~~~i~~lK~ir~~~~~~vIaGNVaT~e~~-~~-l~gaD~VkV-GIG~Gs~CTTr~~t  195 (368)
T d2cu0a1         119 KRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDADFIVGNIANPKAV-DD-LTFADAVKV-GIGPGSICTTRIVA  195 (368)
T ss_dssp             HHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTCCSEEEEEEECCHHHH-TT-CTTSSEEEE-CSSCSTTBCHHHHT
T ss_pred             HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHH-HH-HHCCCCEEE-CCCCCCCCCCHHHC
T ss_conf             9999999839987984375420124566665541210431322113679999-76-522762144-45675555332112


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCC
Q ss_conf             332245899999999876329998089827889-115899998099799986425698
Q 029661          113 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       113 ~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~  169 (190)
                      ....-.+.-+.+..+...+  .+.+|-+||||+ ...+.++..+|||.+-+||.+-+.
T Consensus       196 GvG~Pq~sAi~e~~~~~~~--~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~  251 (368)
T d2cu0a1         196 GVGVPQITAVAMVADRAQE--YGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGT  251 (368)
T ss_dssp             CCCCCHHHHHHHHHHHHHH--HTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             CCCCCHHHHHHHHHHHHHC--CCCEEEECCCCCCCCHHHEEEEECCCEEECCCHHCCC
T ss_conf             4234347899999998752--4970684588786772113566413235305311142

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.55  E-value=5.3e-05  Score=45.02  Aligned_cols=93  Identities=15%  Similarity=0.207  Sum_probs=58.1

Q ss_pred             CCHHHHHHHHCC-CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEE
Q ss_conf             998889974311-3657997330688875332245899999999876329998089827889-11589999809979998
Q 029661           85 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA  162 (190)
Q Consensus        85 t~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVv  162 (190)
                      .|++..+.|... +|.+.+.-.+....+..   ..++-++++.+.     ...++.++|||+ .+.+..+..+|++-+++
T Consensus        33 dP~~~a~~~~~~gadei~ivDl~~~~~~~~---~~~~~i~~i~~~-----~~~pi~~gGGIr~~e~~~~ll~~G~~kVii  104 (252)
T d1h5ya_          33 DPVEMAVRYEEEGADEIAILDITAAPEGRA---TFIDSVKRVAEA-----VSIPVLVGGGVRSLEDATTLFRAGADKVSV  104 (252)
T ss_dssp             CHHHHHHHHHHTTCSCEEEEECCCCTTTHH---HHHHHHHHHHHH-----CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCCCCCCCC---CHHHHHHHHHHH-----CCCCCEEECCCCHHHHHHHHHHCCCCEEEE
T ss_conf             999999999987999899971334322454---089999988750-----488631304521145556675248807983


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             64256988999999999971031332
Q 029661          163 GSAVFGAKDYAEAIKGIKTSKRPQAV  188 (190)
Q Consensus       163 Gsai~~~~d~~~~~~~l~~~~~~~~~  188 (190)
                      ||..+..+  . .++++.+....|++
T Consensus       105 ~s~~~~~~--~-~~~~~~~~~G~q~i  127 (252)
T d1h5ya_         105 NTAAVRNP--Q-LVALLAREFGSQST  127 (252)
T ss_dssp             SHHHHHCT--H-HHHHHHHHHCGGGE
T ss_pred             CCCCCCCC--C-HHHHHHHHCCCCCE
T ss_conf             45445796--1-67899986287858

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=97.53  E-value=0.00092  Score=37.99  Aligned_cols=100  Identities=16%  Similarity=0.144  Sum_probs=64.9

Q ss_pred             CCCHHHHHHHHCC-CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CC-----------HH
Q ss_conf             9998889974311-36579973306888753322458999999998763299980898278891-15-----------89
Q 029661           84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KN-----------AY  150 (190)
Q Consensus        84 ~t~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-~~-----------~~  150 (190)
                      ..|++..+.|... +|.+.++-+....++..-....++.|+++.+     ....++.+.|||+- +.           ++
T Consensus        48 GdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~-----~~~vPi~vGGGIrsi~di~~~~~~~~e~A~  122 (323)
T d1jvna1          48 GKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAK-----TVFVPLTVGGGIKDIVDVDGTKIPALEVAS  122 (323)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTT-----TCCSCEEEESSCSCEECTTCCEECHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCC-----CCCEEEEEECCCCCHHHHHHCCCHHHHHHH
T ss_conf             899999999998799989999786887776777407999986302-----566469984574638885310000268999


Q ss_pred             HHHHCCCCEEEECCCCCCC-----------CCHHHHHHHHHHHHCCCCCC
Q ss_conf             9998099799986425698-----------89999999999710313326
Q 029661          151 KVIEAGANALVAGSAVFGA-----------KDYAEAIKGIKTSKRPQAVA  189 (190)
Q Consensus       151 ~~~~aGad~iVvGsai~~~-----------~d~~~~~~~l~~~~~~~~~~  189 (190)
                      ++..+|||-+++||+.+..           ++|. .++++-+....|++.
T Consensus       123 ~ll~~GadKVvI~T~ai~~p~~~~e~~~~~~n~~-li~~i~~~fGsq~Iv  171 (323)
T d1jvna1         123 LYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTS-PIETISKAYGAQAVV  171 (323)
T ss_dssp             HHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCS-HHHHHHHHHCGGGEE
T ss_pred             HHHHCCCCEEEECHHHHHCHHHHHHHHHHCCCCH-HHHHHHHHHCCCEEE
T ss_conf             9997498768725377608477788775034311-599999973984089

>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Entamoeba histolytica [TaxId: 5759]

Probab=97.53  E-value=0.0013  Score=37.23  Aligned_cols=135  Identities=18%  Similarity=0.296  Sum_probs=85.4

Q ss_pred             HHHHHHCCCCEEEE-C-------CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC-------HHHHHH----HHCCC---
Q ss_conf             99998749999999-1-------13788521999999999809949999738999-------888997----43113---
Q 029661           40 VPDFIKAGADIVSV-H-------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LSAIEC----VLDVV---   97 (190)
Q Consensus        40 i~~~~~~Gad~i~v-h-------~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~-------~~~~~~----~~~~~---   97 (190)
                      .+++.+.|++++.+ |       .|.  .+.+.+-++.+-+.|+.|.+.+.=+..       .+.+..    .+..+   
T Consensus        86 a~mLkd~G~~yviiGHSERR~~f~Et--d~~i~~K~~~al~~gl~pIlCIGE~~~~re~~~~~~~~~~Ql~~~~~~~~~~  163 (260)
T d1m6ja_          86 VGMLVDCQVPYVILGHSERRQIFHES--NEQVAEKVKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKE  163 (260)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHHSCCC--HHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHSCTG
T ss_pred             HHHHHHHCCCEEEECCHHHHHHHCCC--HHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHCCCCHH
T ss_conf             89998637530110231112441540--8999999999986388179984341333324851888999887530112066


Q ss_pred             C-EEEEEEEEC----CCCCCCCCHHHHHH-HHHHHHHHHHCC-----CCCEEEEECCCCCCCHHHHHH-CCCCEEEECCC
Q ss_conf             6-579973306----88875332245899-999999876329-----998089827889115899998-09979998642
Q 029661           98 D-LVLIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLEKG-----VNPWIEVDGGVGPKNAYKVIE-AGANALVAGSA  165 (190)
Q Consensus        98 d-~vl~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~~~-----~~~~i~vdGGI~~~~~~~~~~-aGad~iVvGsa  165 (190)
                      + .-++.+-+|    |+ |+...+..... ...+|+.+.+.-     .+.+|..+|+++++|+.++.. .++|++-+|++
T Consensus       164 ~~~~iiIAYEPvWAIGT-G~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~v~ilYGGSV~~~N~~~i~~~~~vDG~LVGgA  242 (260)
T d1m6ja_         164 AWKNIILAYEPVWAIGT-GKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGA  242 (260)
T ss_dssp             GGGGEEEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECSCCCTTTHHHHHTSTTCCEEEESGG
T ss_pred             HHHCCEEECCCEECCCC-CCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECHH
T ss_conf             55150775163311468-86568177777778888898864053234777489718988759999847789985884157


Q ss_pred             CCCCCCHHHHHH
Q ss_conf             569889999999
Q 029661          166 VFGAKDYAEAIK  177 (190)
Q Consensus       166 i~~~~d~~~~~~  177 (190)
                      -...++..+-++
T Consensus       243 SL~~~~F~~Ii~  254 (260)
T d1m6ja_         243 SLDAAKFKTIIN  254 (260)
T ss_dssp             GGSHHHHHHHHG
T ss_pred             HCCHHHHHHHHH
T ss_conf             558899999999

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=97.50  E-value=0.0022  Score=35.83  Aligned_cols=159  Identities=16%  Similarity=0.268  Sum_probs=93.0

Q ss_pred             CCCCEEEEEEECCHHHHH---HHHHHCC-CCEEEECCCCC----------CCCHHHHHHHHHHHHCCCE-EEEECCCCCH
Q ss_conf             999378888112958899---9998749-99999911378----------8521999999999809949-9997389998
Q 029661           23 TDLPLDVHLMIVEPEQRV---PDFIKAG-ADIVSVHCEQS----------STIHLHRTLNQIKDLGAKA-GVVLNPATSL   87 (190)
Q Consensus        23 ~~~~i~vhlmv~~p~~~i---~~~~~~G-ad~i~vh~e~~----------~~~~~~~~i~~i~~~g~~~-gl~i~~~t~~   87 (190)
                      .+.|+-+.++..+...+.   +.+.+++ +|.+.+...+-          ......+.++++++.-..+ .+-+.|....
T Consensus        92 ~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~~~~~~~~~~~~~~~~~~v~~~~~~pv~vKl~p~~~~  171 (311)
T d1juba_          92 QEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDL  171 (311)
T ss_dssp             SSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSH
T ss_pred             CCCCCEEECCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCHH
T ss_conf             67870440146554125899988741554554662133556666320002389999999875302456423124443025


Q ss_pred             HHHHHHHC-----CCCEEEEE-------EEEC-----------CCC---CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             88997431-----13657997-------3306-----------888---7533224589999999987632999808982
Q 029661           88 SAIECVLD-----VVDLVLIM-------SVNP-----------GFG---GQSFIESQVKKISDLRRMCLEKGVNPWIEVD  141 (190)
Q Consensus        88 ~~~~~~~~-----~~d~vl~m-------~v~p-----------G~~---gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vd  141 (190)
                      ..+...+.     .++.+...       ...+           |.+   |....+..++.++++++   ..+.+.+|...
T Consensus       172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~---~~~~~~~Iig~  248 (311)
T d1juba_         172 VHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYT---RLKPEIQIIGT  248 (311)
T ss_dssp             HHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHT---TSCTTSEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---HCCCCEEEEEC
T ss_conf             678889999875154367413444552232234444334564445776564357067999999997---41897368851


Q ss_pred             CCCC-CCCHHHHHHCCCCEEEECCCCCC-CCC-HHHHHHHHHHHHC
Q ss_conf             7889-11589999809979998642569-889-9999999997103
Q 029661          142 GGVG-PKNAYKVIEAGANALVAGSAVFG-AKD-YAEAIKGIKTSKR  184 (190)
Q Consensus       142 GGI~-~~~~~~~~~aGad~iVvGsai~~-~~d-~~~~~~~l~~~~~  184 (190)
                      |||+ .+++.+++.+|||.+=++|+++. .++ +.+..++|++.++
T Consensus       249 GGI~s~~Da~~~i~aGA~~Vql~tal~~~Gp~~i~~i~~~L~~~m~  294 (311)
T d1juba_         249 GGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMN  294 (311)
T ss_dssp             SSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             7838999999999849990365175674091999999999999999

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=97.49  E-value=0.00016  Score=42.32  Aligned_cols=93  Identities=17%  Similarity=0.229  Sum_probs=58.0

Q ss_pred             CCCHHHHHHHHCC-CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEE
Q ss_conf             9998889974311-3657997330688875332245899999999876329998089827889-1158999980997999
Q 029661           84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV  161 (190)
Q Consensus        84 ~t~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iV  161 (190)
                      ..|++..+.|... +|.+.+........+..   ...+.++++.   .  ....+++++|||+ .+++..+..+|++-+|
T Consensus        30 gdP~~~a~~~~~~g~dei~iiDl~~~~~~~~---~~~~~i~~i~---~--~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVi  101 (251)
T d1ka9f_          30 GDPVEAARAYDEAGADELVFLDISATHEERA---ILLDVVARVA---E--RVFIPLTVGGGVRSLEDARKLLLSGADKVS  101 (251)
T ss_dssp             TCHHHHHHHHHHHTCSCEEEEECCSSTTCHH---HHHHHHHHHH---T--TCCSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred             CCHHHHHHHHHHCCCCEEEEEECCCCCCCCH---HHHHHHHHHH---H--CCCCCHHEECCCCCHHHHHHHHHCCCCEEE
T ss_conf             8999999999986999899984445212331---6789999888---6--048512101153478888899974897799


Q ss_pred             ECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             86425698899999999997103133
Q 029661          162 AGSAVFGAKDYAEAIKGIKTSKRPQA  187 (190)
Q Consensus       162 vGsai~~~~d~~~~~~~l~~~~~~~~  187 (190)
                      +||..++.++   .++++-+....|.
T Consensus       102 i~s~~~~n~~---~i~~~~~~~G~q~  124 (251)
T d1ka9f_         102 VNSAAVRRPE---LIRELADHFGAQA  124 (251)
T ss_dssp             ECHHHHHCTH---HHHHHHHHHCGGG
T ss_pred             ECCHHHHCHH---HHHHHHHHHCCCC
T ss_conf             8944543878---9999987620233

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.47  E-value=0.00014  Score=42.66  Aligned_cols=117  Identities=15%  Similarity=0.209  Sum_probs=70.4

Q ss_pred             CHH-HHHH-HHHHCC-C--------CEEEE---CCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHC-CCCE
Q ss_conf             958-8999-998749-9--------99999---113788521999999999809949999738999888997431-1365
Q 029661           35 EPE-QRVP-DFIKAG-A--------DIVSV---HCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDL   99 (190)
Q Consensus        35 ~p~-~~i~-~~~~~G-a--------d~i~v---h~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~~~~~~~~-~~d~   99 (190)
                      -|+ ++++ .+..+| +        |.+.+   |...  ...+.+.++.+++.....-+.+...+. +.+.+.+. .+|.
T Consensus        26 ~PGlR~l~k~Av~~GGg~~HR~gLsd~iLIkdNHi~~--~~~~~~~~~~~~~~~~~~~IeVEv~~~-~~~~~a~~~g~di  102 (167)
T d1qapa1          26 LPGLRTALKYAVLCGGGANHRLGLTDAFLIKENHIIA--SGSVRQAVEKAFWLHPDVPVEVEVENL-DELDDALKAGADI  102 (167)
T ss_dssp             CTTCHHHHHHHHHHHTCBCCCSSSSSCEEECHHHHHH--HSSHHHHHHHHHHHSTTSCEEEEESSH-HHHHHHHHTTCSE
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHH--HHHHHHHHHHHHHCCCCCEEEEECCCH-HHHHHHHHCCCCE
T ss_conf             8156899999999816600348875126711516866--420356667776317872499852867-8889887458859


Q ss_pred             EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCC
Q ss_conf             7997330688875332245899999999876329998089827889115899998099799986425698
Q 029661          100 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus       100 vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~iVvGsai~~~  169 (190)
                      |++       +.  |.|..+   ++..+.+   +.+..+++-|||+.+|+.++.+.|+|++.+|+...++
T Consensus       103 ImL-------DN--~~pe~~---~~av~~i---~~~~~lEaSGgI~~~ni~~ya~~GVD~IS~galt~~a  157 (167)
T d1qapa1         103 IML-------DN--FNTDQM---REAVKRV---NGQARLEVSGNVTAETLREFAETGVDFISVGALTKHV  157 (167)
T ss_dssp             EEE-------SS--CCHHHH---HHHHHTT---CTTCCEEECCCSCHHHHHHHHHTTCSEEECSHHHHEE
T ss_pred             EEE-------CC--CCHHHH---HHHHHHC---CCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf             996-------58--888999---9999860---7945999857988899999997499999888434799

>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.0019  Score=36.21  Aligned_cols=139  Identities=17%  Similarity=0.262  Sum_probs=85.1

Q ss_pred             HHHHHHHCCCCEEEE-C-------CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC-------HHHHH----HHHCC---
Q ss_conf             999998749999999-1-------13788521999999999809949999738999-------88899----74311---
Q 029661           39 RVPDFIKAGADIVSV-H-------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LSAIE----CVLDV---   96 (190)
Q Consensus        39 ~i~~~~~~Gad~i~v-h-------~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~-------~~~~~----~~~~~---   96 (190)
                      -.+.+.+.|++++.+ |       .|.  .+.+.+-++.+.+.|+.+.+.+.-+..       .+.+.    ..+..   
T Consensus        79 Sa~mlkd~G~~~viiGHSERR~~~~E~--~~~i~~K~~~al~~~l~pIlCvGE~~~~r~~~~~~~~~~~Ql~~~~~~~~~  156 (255)
T d1trea_          79 SAAMLKDIGAQYIIIGHSERRTYHKES--DELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGA  156 (255)
T ss_dssp             CHHHHHHHTCCEEEESCHHHHHHSCCC--HHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHCCCHHHHCCCCCCCCCCCC--CHHHHHHHHHHHHHHEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHCCCCH
T ss_conf             078898846222011341243543333--788999999877510006886155143301102445544423333223565


Q ss_pred             CCE-EEEEEEEC----CCCCCCCCHHHHHH-HHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHH-CCCCEEEECCC
Q ss_conf             365-79973306----88875332245899-9999998763----29998089827889115899998-09979998642
Q 029661           97 VDL-VLIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLE----KGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSA  165 (190)
Q Consensus        97 ~d~-vl~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~----~~~~~~i~vdGGI~~~~~~~~~~-aGad~iVvGsa  165 (190)
                      .++ -++.+.+|    |+ |....+..... ...+|+.+.+    ...+.+|..+|+++++|+.++.. .++|++-+|++
T Consensus       157 ~~~~~iiIAYEPvWAIGt-G~~a~~~~~~~~~~~ir~~l~~~~~~~~~~v~iLYGGSV~~~N~~~i~~~~~vdG~LVGgA  235 (255)
T d1trea_         157 AAFEGAVIAYEPVWAIGT-GKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGA  235 (255)
T ss_dssp             GGGTTCEEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEESGG
T ss_pred             HHCCCCEEEECCHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECHH
T ss_conf             552670799651653155-5466741024567888888864032223775188617868738999966889987995355


Q ss_pred             CCCCCCHHHHHHHHH
Q ss_conf             569889999999999
Q 029661          166 VFGAKDYAEAIKGIK  180 (190)
Q Consensus       166 i~~~~d~~~~~~~l~  180 (190)
                      -.+.+++..-++...
T Consensus       236 Sl~~~~F~~Ii~~~~  250 (255)
T d1trea_         236 SLKADAFAVIVKAAE  250 (255)
T ss_dssp             GGCHHHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHHHH
T ss_conf             468899999999999

>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: Macrophomate synthase
species: Macrophoma commelinae [TaxId: 108330]

Probab=97.38  E-value=0.00042  Score=39.95  Aligned_cols=165  Identities=9%  Similarity=0.097  Sum_probs=99.9

Q ss_pred             HHHHCCC--CCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH-----HC--------------
Q ss_conf             9870347--99937888811295889999987499999991137885219999999998-----09--------------
Q 029661           16 VDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-----LG--------------   74 (190)
Q Consensus        16 i~~i~~~--~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~-----~g--------------   74 (190)
                      +..++..  ...+..|-.-..++ .++..+.++|+++|.++.-. +.++..++++.+|=     +|              
T Consensus        84 i~a~~~~~~~~~~~iVRvp~~~~-~~I~~~LD~Ga~GIivP~V~-s~eea~~~v~~~rypP~G~Rg~~~~~~~~g~~~~~  161 (299)
T d1izca_          84 IHAAQHHSEGRSLVIVRVPKHDE-VSLSTALDAGAAGIVIPHVE-TVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADAS  161 (299)
T ss_dssp             HHHHHHHTTTCSEEEEECCTTCH-HHHHHHHHHTCSEEEETTCC-CHHHHHHHHHHHSCTTTCCCCCCSTTCBTTTBCCC
T ss_pred             HHHHHHHCCCCCCEEEECCCCCH-HHHHHHHHHCCCEEECCCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999847899974896898876-79999997486844456106-59999999984112238975546443100002332


Q ss_pred             ---------------CCEEEEECCCCCHHHHHHHHC--CCCEEEEE----EEECCCC-----CCCCCHHHHHHHHHHHHH
Q ss_conf             ---------------949999738999888997431--13657997----3306888-----753322458999999998
Q 029661           75 ---------------AKAGVVLNPATSLSAIECVLD--VVDLVLIM----SVNPGFG-----GQSFIESQVKKISDLRRM  128 (190)
Q Consensus        75 ---------------~~~gl~i~~~t~~~~~~~~~~--~~d~vl~m----~v~pG~~-----gq~~~~~~~~ki~~~~~~  128 (190)
                                     ..+.+-|....-++.+++++.  .+|.+.+-    +..-|..     ||...|...+-++++.+.
T Consensus       162 ~~~~~~~y~~~~n~~~~vi~qIEt~~av~nldeI~av~GVD~ifiGp~DLs~slG~~~~~~~g~~~~p~v~~ai~~i~~a  241 (299)
T d1izca_         162 LFPNDPYNVATSNNHVCIIPQIESVKGVENVDAIAAMPEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVEAMTKFSTA  241 (299)
T ss_dssp             SSTTCTTCHHHHHHHCEEEEEECSHHHHHTHHHHHTCTTCCCEEECHHHHHHHTTCCTTCCTTSCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             24543467764054420333047899999899986135641799732577762589866455666579999999999999


Q ss_pred             HHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCC--CCCCCCHHHHHHHHHHHHCCC
Q ss_conf             7632999808982788911589999809979998642--569889999999999710313
Q 029661          129 CLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA--VFGAKDYAEAIKGIKTSKRPQ  186 (190)
Q Consensus       129 ~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~iVvGsa--i~~~~d~~~~~~~l~~~~~~~  186 (190)
                      ..+.+  ..+ -.+..+++.++.+++.|++.+++|+=  ++. .-.+..++++|...++-
T Consensus       242 ~k~~G--k~~-g~~~~~~~~~~~~~~~G~~~i~~g~D~~~l~-~~~~~~l~~~R~~~~~~  297 (299)
T d1izca_         242 AQRNG--VPI-FGGALSVDMVPSLIEQGYRAIAVQFDVWGLS-RLVHGSLAQARASAKQF  297 (299)
T ss_dssp             HHHTT--CCE-EEECSSGGGHHHHHHTTEEEEEEEEHHHHHH-HHHHHHHHHHHHHHGGG
T ss_pred             HHHCC--CCE-EECCCCHHHHHHHHHCCCCEEEEHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf             99859--947-9616999999999975998999747999999-99999999999987643

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.29  E-value=4.3e-05  Score=45.51  Aligned_cols=33  Identities=15%  Similarity=0.443  Sum_probs=29.0

Q ss_pred             CCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCC
Q ss_conf             98089827889-11589999809979998642569
Q 029661          135 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       135 ~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~  168 (190)
                      +.++.|+|||+ +++++++.+ +||++|+||++.+
T Consensus       187 ~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaive  220 (231)
T d2f6ua1         187 KARLFYGGGIDSREKAREMLR-YADTIIVGNVIYE  220 (231)
T ss_dssp             SSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHH-CCCEEEECHHHHC
T ss_conf             997899927689999999980-3999999959960

>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Leishmania mexicana [TaxId: 5665]

Probab=97.27  E-value=0.0043  Score=34.20  Aligned_cols=133  Identities=17%  Similarity=0.226  Sum_probs=84.9

Q ss_pred             HHHHHHCCCCEEEE-C-------CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC-------HHH----HHHHHCCCC--
Q ss_conf             99998749999999-1-------13788521999999999809949999738999-------888----997431136--
Q 029661           40 VPDFIKAGADIVSV-H-------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LSA----IECVLDVVD--   98 (190)
Q Consensus        40 i~~~~~~Gad~i~v-h-------~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~-------~~~----~~~~~~~~d--   98 (190)
                      .+++.+.|++++.+ |       .|.  .+.+.+-++.+.+.|+.|.+.+.=+..       .+.    +...+..+.  
T Consensus        79 a~mL~d~g~~yviiGHSERR~~~~Et--d~~v~~K~~~al~~~l~pI~CiGE~~~~~~~~~~~~~l~~ql~~~l~~~~~~  156 (249)
T d1n55a_          79 MPILKDIGVHWVILGHSERRTYYGET--DEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKD  156 (249)
T ss_dssp             HHHHHHHTCCEEEESCHHHHHHSCCC--HHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHCCCEEEECCCHHHHHHCCC--HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHCCCCCC
T ss_conf             89998736520000340101220530--8888999999998699459995255333343210122034431011035610


Q ss_pred             --EEEEEEEEC----CCCCCCCCHHHHHH-HHHHHHHHHHCC-----CCCEEEEECCCCCCCHHHHHH-CCCCEEEECCC
Q ss_conf             --579973306----88875332245899-999999876329-----998089827889115899998-09979998642
Q 029661           99 --LVLIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLEKG-----VNPWIEVDGGVGPKNAYKVIE-AGANALVAGSA  165 (190)
Q Consensus        99 --~vl~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~~~-----~~~~i~vdGGI~~~~~~~~~~-aGad~iVvGsa  165 (190)
                        .-++.+-+|    |+ |+...+..... ...+|+.+.+..     .+.+|..+|+++++|+.++.. .++|++-+|++
T Consensus       157 ~~~~iiIAYEPvWAIGt-G~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vdG~LVG~A  235 (249)
T d1n55a_         157 AWNQVVLAYEPVWAIGT-GKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGA  235 (249)
T ss_dssp             GGGGEEEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEESSCCTTTHHHHHTSTTCCEEEESGG
T ss_pred             CCCCEEEEECCEECCCC-CCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEECCCCCHHHHHHHHCCCCCCEEEEEHH
T ss_conf             13554897265320367-86667588888899999999865033233865289718879869999956889896995226


Q ss_pred             CCCCCCHHHHH
Q ss_conf             56988999999
Q 029661          166 VFGAKDYAEAI  176 (190)
Q Consensus       166 i~~~~d~~~~~  176 (190)
                      -..+ +..+-+
T Consensus       236 Sl~~-~F~~Ii  245 (249)
T d1n55a_         236 SLKP-EFRDII  245 (249)
T ss_dssp             GGST-THHHHH
T ss_pred             HCCH-HHHHHH
T ss_conf             5589-999999

>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.26  E-value=0.002  Score=36.05  Aligned_cols=137  Identities=13%  Similarity=0.195  Sum_probs=85.3

Q ss_pred             HHHHHHHCCCCEEEE-CCC-----CCCCCHHHHHHHHHHHHCCCEEEEECCCC-------CHHHHHHH----HCCCC--E
Q ss_conf             999998749999999-113-----78852199999999980994999973899-------98889974----31136--5
Q 029661           39 RVPDFIKAGADIVSV-HCE-----QSSTIHLHRTLNQIKDLGAKAGVVLNPAT-------SLSAIECV----LDVVD--L   99 (190)
Q Consensus        39 ~i~~~~~~Gad~i~v-h~e-----~~~~~~~~~~i~~i~~~g~~~gl~i~~~t-------~~~~~~~~----~~~~d--~   99 (190)
                      -.+++.+.|++++.+ |.|     ..+.+.+.+-++.+.+.|+.|.+.+.=+-       ..+.+...    +....  .
T Consensus        78 Sa~mlkd~g~~yviiGHSErR~~~~E~~~~i~~K~~~~~~~~l~pI~CiGE~~~e~~~~~~~~~~~~ql~~~~~~~~~~~  157 (251)
T d2btma_          78 SPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQ  157 (251)
T ss_dssp             CHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred             CHHHHHHHCCCEEEECCHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCHHC
T ss_conf             89999871865021034124555311188889999986428974899961431000221014677888876522532110


Q ss_pred             --EEEEEEEC----CCCCCCCCHHHHHH-HHHHHHHHHHC-----CCCCEEEEECCCCCCCHHHHHH-CCCCEEEECCCC
Q ss_conf             --79973306----88875332245899-99999987632-----9998089827889115899998-099799986425
Q 029661          100 --VLIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAV  166 (190)
Q Consensus       100 --vl~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~~-----~~~~~i~vdGGI~~~~~~~~~~-aGad~iVvGsai  166 (190)
                        -++.+-+|    |+ |+...+...+. ++.+|+.+.+.     ..+.+|..+|+++++|+.++.. .++|++-+|++-
T Consensus       158 ~~~iiIAYEPvWAIGT-G~~a~~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vDG~LVG~AS  236 (251)
T d2btma_         158 VKQAVIAYEPIWAIGT-GKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGAS  236 (251)
T ss_dssp             HTTCEEEECCGGGTTT-SCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEESSCCTTTHHHHHTSTTCCEEEESGGG
T ss_pred             CCEEEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEECCCCHHHHHHHHCCCCCCEEEECHHH
T ss_conf             3328998663012455-667882666666899999998640633416585885089798699999668899979953576


Q ss_pred             CCCCCHHHHH
Q ss_conf             6988999999
Q 029661          167 FGAKDYAEAI  176 (190)
Q Consensus       167 ~~~~d~~~~~  176 (190)
                      ...++..+-+
T Consensus       237 l~~~~F~~Ii  246 (251)
T d2btma_         237 LEPASFLQLV  246 (251)
T ss_dssp             SSHHHHHHHH
T ss_pred             CCHHHHHHHH
T ss_conf             7989999999

>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.0055  Score=33.63  Aligned_cols=152  Identities=16%  Similarity=0.130  Sum_probs=92.4

Q ss_pred             CCHHHHHHHCCCCCCCEEEEEEE-CCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHC---CCEEEEECCCCC
Q ss_conf             79888987034799937888811-29588999998749999999113788521999999999809---949999738999
Q 029661           11 IGPLVVDALRPVTDLPLDVHLMI-VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG---AKAGVVLNPATS   86 (190)
Q Consensus        11 ~g~~~i~~i~~~~~~~i~vhlmv-~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g---~~~gl~i~~~t~   86 (190)
                      ..++..++|.+..+...+. +.+ .++....+.+...+.|++-+|..-    ++ +.++.+++..   ............
T Consensus        37 Vs~~~a~~i~~~~~~~~V~-Vfv~~~~~~i~~~~~~~~~d~iQlHG~e----~~-~~~~~l~~~~~~~~~~~~~~~~~~~  110 (198)
T d1piia1          37 VNVEQAQEVMAAAPLQYVG-VFRNHDIADVVDKAKVLSLAAVQLHGNE----EQ-LYIDTLREALPAHVAIWKALSVGET  110 (198)
T ss_dssp             CCHHHHHHHHHHCCCEEEE-EESSCCHHHHHHHHHHHTCSEEEECSCC----CH-HHHHHHHHHSCTTSEEEEEEECSSS
T ss_pred             CCHHHHHHHHHHCCCCCCE-EEECCCHHHHHHHHHCCCCCCEEECCCC----CH-HHHHHHHCCCCCCCCCEECCCHHHH
T ss_conf             6999998865420455403-5641420357776402466430114776----37-8999875026654221011342333


Q ss_pred             HHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCC
Q ss_conf             88899743113657997330688875332245899999999876329998089827889115899998099799986425
Q 029661           87 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV  166 (190)
Q Consensus        87 ~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~iVvGsai  166 (190)
                      ..  .+....+|.+++-+ .+|..|+.|.-..+.+      .     ...++...|||+++|+.++++.++.++=+-|.+
T Consensus       111 ~~--~~~~~~~d~~lld~-~~gGtG~~fdw~~~~~------~-----~~~~~~LAGGl~~~Nv~~a~~~~p~gvDvsSGv  176 (198)
T d1piia1         111 LP--AREFQHVDKYVLDN-GQGGSGQRFDWSLLNG------Q-----SLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAV  176 (198)
T ss_dssp             CC--CCCCTTCCEEEEES-CSCCSSCCCCGGGGTT------S-----CCTTEEEESSCCTTTHHHHHTTCCSEEEECGGG
T ss_pred             HH--HHHHHHHCCCCCCC-CCCCCCEEEEHHHHCC------C-----CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf             45--77765402214477-4411032422322035------6-----653168845889899999986699999967854


Q ss_pred             CCC---CCHHHHHHHHHHHH
Q ss_conf             698---89999999999710
Q 029661          167 FGA---KDYAEAIKGIKTSK  183 (190)
Q Consensus       167 ~~~---~d~~~~~~~l~~~~  183 (190)
                      =.+   .|+. .++.+-+.+
T Consensus       177 E~~pG~KD~~-ki~~f~~~v  195 (198)
T d1piia1         177 ESQPGIKDAR-LLASVFQTL  195 (198)
T ss_dssp             EEETTEECHH-HHHHHHHHH
T ss_pred             CCCCCCCCHH-HHHHHHHHH
T ss_conf             1879975999-999999998

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.04  E-value=0.0074  Score=32.87  Aligned_cols=131  Identities=16%  Similarity=0.194  Sum_probs=78.2

Q ss_pred             HHHHCCCCEEEECCCCC--------------------CCC----HHHHHHHHHHHH-CCCEEEEECCCCC------HHHH
Q ss_conf             99874999999911378--------------------852----199999999980-9949999738999------8889
Q 029661           42 DFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-GAKAGVVLNPATS------LSAI   90 (190)
Q Consensus        42 ~~~~~Gad~i~vh~e~~--------------------~~~----~~~~~i~~i~~~-g~~~gl~i~~~t~------~~~~   90 (190)
                      .+.++|.|+|-+|.-.+                    +.+    -+.++++.+|+. +...++-+++...      .+..
T Consensus       151 ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~  230 (337)
T d1z41a1         151 RAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADH  230 (337)
T ss_dssp             HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHH
T ss_pred             HHHHCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHH
T ss_conf             99983998588643675221032277433445444515653026899999877665035634885342234676410446


Q ss_pred             ---HHHHC--CCCEEEEEEEECCCCCCCCCHH-HHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCC-CCEEEE
Q ss_conf             ---97431--1365799733068887533224-5899999999876329998089827889-11589999809-979998
Q 029661           91 ---ECVLD--VVDLVLIMSVNPGFGGQSFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVA  162 (190)
Q Consensus        91 ---~~~~~--~~d~vl~m~v~pG~~gq~~~~~-~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aG-ad~iVv  162 (190)
                         .+.+.  .+|++.+.+-..........+. ...-.+++|+..     +.++.+.|+|+ ++.+.++++.| +|.+.+
T Consensus       231 ~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~  305 (337)
T d1z41a1         231 IGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA-----DMATGAVGMITDGSMAEEILQNGRADLIFI  305 (337)
T ss_dssp             HHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-----CCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-----CCEEEEECCCCCHHHHHHHHHCCCCCEEHH
T ss_conf             899999998498620122123445554568740078999999866-----930899689199999999998799565066


Q ss_pred             CCCCCCCCCHHHHHH
Q ss_conf             642569889999999
Q 029661          163 GSAVFGAKDYAEAIK  177 (190)
Q Consensus       163 Gsai~~~~d~~~~~~  177 (190)
                      |+++...+|+-..++
T Consensus       306 gR~~iadPd~~~k~~  320 (337)
T d1z41a1         306 GRELLRDPFFARTAA  320 (337)
T ss_dssp             CHHHHHCTTHHHHHH
T ss_pred             HHHHHHCCHHHHHHH
T ss_conf             599886936999997

>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Vibrio marinus [TaxId: 90736]

Probab=96.97  E-value=0.0087  Score=32.48  Aligned_cols=140  Identities=21%  Similarity=0.349  Sum_probs=85.4

Q ss_pred             HHHHHHHCCCCEEEE-CCC-----CCCCCHHHHHHHHHHHHCCCEEEEECCCCC-------HHHH----HHHHCC-----
Q ss_conf             999998749999999-113-----788521999999999809949999738999-------8889----974311-----
Q 029661           39 RVPDFIKAGADIVSV-HCE-----QSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LSAI----ECVLDV-----   96 (190)
Q Consensus        39 ~i~~~~~~Gad~i~v-h~e-----~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~-------~~~~----~~~~~~-----   96 (190)
                      -..++.+.|++++.+ |.|     ..+.+.+.+-++.+.+.|+.|.+.+.=+..       .+.+    ...+..     
T Consensus        80 Sa~mlkd~g~~yviiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCVGE~~~~r~~~~~~~vv~~Ql~~~~~~~~~~~  159 (255)
T d1aw1a_          80 SPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEA  159 (255)
T ss_dssp             CHHHHGGGTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHCCEEEECCHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCEEEEEHHHHHHHCCHHHHH
T ss_conf             08988754123023224010001366688899999988875054699944604543024410353113454530013554


Q ss_pred             CCEEEEEEEEC----CCCCCCCCHHHHHHHH-HHHHHHHHCC----CCCEEEEECCCCCCCHHHHHH-CCCCEEEECCCC
Q ss_conf             36579973306----8887533224589999-9999876329----998089827889115899998-099799986425
Q 029661           97 VDLVLIMSVNP----GFGGQSFIESQVKKIS-DLRRMCLEKG----VNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAV  166 (190)
Q Consensus        97 ~d~vl~m~v~p----G~~gq~~~~~~~~ki~-~~~~~~~~~~----~~~~i~vdGGI~~~~~~~~~~-aGad~iVvGsai  166 (190)
                      .+. ++.+.+|    | +|+...+...+++. .+|..+.+..    .+.+|..+|.++++|+.++.. .++|++-+|++-
T Consensus       160 ~~~-iiIAYEPvWAIG-tg~~a~~~~i~~~~~~i~~~~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vDG~LVG~AS  237 (255)
T d1aw1a_         160 LEG-AIIAYEPIWAIG-TGKAATAEDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAA  237 (255)
T ss_dssp             GTT-CEEEECCGGGTT-TSCCCCHHHHHHHHHHHHHHHHTTCHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEESGGG
T ss_pred             CCC-CEEEECCHHCCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHH
T ss_conf             156-547865400146-776665055667899997765203644466610897188787589999568898869953686


Q ss_pred             CCCCCHHHHHHHHH
Q ss_conf             69889999999999
Q 029661          167 FGAKDYAEAIKGIK  180 (190)
Q Consensus       167 ~~~~d~~~~~~~l~  180 (190)
                      ...++..+-++...
T Consensus       238 l~~~~F~~Ii~~~~  251 (255)
T d1aw1a_         238 LDAKSFAAIAKAAA  251 (255)
T ss_dssp             GSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             69899999999999

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=96.89  E-value=0.01  Score=32.08  Aligned_cols=145  Identities=19%  Similarity=0.215  Sum_probs=87.1

Q ss_pred             CCCCCEEEEEEECCHHHHHHHH---HH-CCCCEEEECCCCC----------C-CCHHHHHHHHHHHHC-CCEEEEECCCC
Q ss_conf             7999378888112958899999---87-4999999911378----------8-521999999999809-94999973899
Q 029661           22 VTDLPLDVHLMIVEPEQRVPDF---IK-AGADIVSVHCEQS----------S-TIHLHRTLNQIKDLG-AKAGVVLNPAT   85 (190)
Q Consensus        22 ~~~~~i~vhlmv~~p~~~i~~~---~~-~Gad~i~vh~e~~----------~-~~~~~~~i~~i~~~g-~~~gl~i~~~t   85 (190)
                      .++.|+.+.++..++..+.+.+   .+ +|+|.+-+...+-          . .+.....++.+++.. ..+.+-+.+..
T Consensus        96 ~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~vkl~~~~  175 (311)
T d1ep3a_          96 FPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNV  175 (311)
T ss_dssp             CTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             67886321100000247999987775235644011366798500144333469899999999998512787344202210


Q ss_pred             C-HHHHHHHHC--CCCEEEEEEEE------------------CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             9-888997431--13657997330------------------68887533224589999999987632999808982788
Q 029661           86 S-LSAIECVLD--VVDLVLIMSVN------------------PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV  144 (190)
Q Consensus        86 ~-~~~~~~~~~--~~d~vl~m~v~------------------pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI  144 (190)
                      + ...+...+.  .+|.+......                  .|..|....+..++.++++++.     .+++|...|||
T Consensus       176 ~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~-----~~ipIig~GGI  250 (311)
T d1ep3a_         176 TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQD-----VDIPIIGMGGV  250 (311)
T ss_dssp             SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTT-----CSSCEEECSSC
T ss_pred             CCHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-----CCEEEEEECCC
T ss_conf             2058899999986520368885214331010256643256677878875640257899998641-----46448970896


Q ss_pred             C-CCCHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf             9-11589999809979998642569889
Q 029661          145 G-PKNAYKVIEAGANALVAGSAVFGAKD  171 (190)
Q Consensus       145 ~-~~~~~~~~~aGad~iVvGsai~~~~d  171 (190)
                      . .+++.+...+|||.+-+||+++..+.
T Consensus       251 ~s~~Da~~~i~~GAd~V~ig~~~~~~P~  278 (311)
T d1ep3a_         251 ANAQDVLEMYMAGASAVAVGTANFADPF  278 (311)
T ss_dssp             CSHHHHHHHHHHTCSEEEECTHHHHCTT
T ss_pred             CCHHHHHHHHHCCCCEEEECHHHHCCCH
T ss_conf             9999999999809999996388773982

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.88  E-value=0.00063  Score=38.94  Aligned_cols=91  Identities=12%  Similarity=0.230  Sum_probs=56.8

Q ss_pred             CCCHHHHHHHHCC-CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEE
Q ss_conf             9998889974311-3657997330688875332245899999999876329998089827889-1158999980997999
Q 029661           84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV  161 (190)
Q Consensus        84 ~t~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iV  161 (190)
                      +.|++....|.+. +|.+.+.-.+...++ ....   +.++++...     ...+++++|||+ .+.+..+.+.|++.++
T Consensus        31 ~dP~~~a~~~~~~ga~~l~i~DLd~~~~~-~~~~---~~i~~i~~~-----~~~pi~vGGGIrs~~~~~~ll~~Ga~kVv  101 (239)
T d1vzwa1          31 GSPLEAALAWQRSGAEWLHLVDLDAAFGT-GDNR---ALIAEVAQA-----MDIKVELSGGIRDDDTLAAALATGCTRVN  101 (239)
T ss_dssp             CCHHHHHHHHHHTTCSEEEEEEHHHHHTS-CCCH---HHHHHHHHH-----CSSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHHCCCCEEEEEEECCCCCC-CCHH---HHHHHHHHH-----CCCCEEEECCCCCCHHHHHHHCCCCCCCH
T ss_conf             89899999999869988999730022234-4008---999988764-----08606763001343012100012664113


Q ss_pred             ECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             8642569889999999999710313
Q 029661          162 AGSAVFGAKDYAEAIKGIKTSKRPQ  186 (190)
Q Consensus       162 vGsai~~~~d~~~~~~~l~~~~~~~  186 (190)
                      +||..+..  |. ..+++.+....|
T Consensus       102 i~s~~~~~--~~-~~~~~~~~~g~~  123 (239)
T d1vzwa1         102 LGTAALET--PE-WVAKVIAEHGDK  123 (239)
T ss_dssp             ECHHHHHC--HH-HHHHHHHHHGGG
T ss_pred             HHHHHHHC--CC-CCHHHHCCCCCE
T ss_conf             56776330--11-001111157715

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=96.87  E-value=0.0078  Score=32.74  Aligned_cols=131  Identities=17%  Similarity=0.240  Sum_probs=76.7

Q ss_pred             HHHHCCCCEEEECCCCC--------------------CCCH----HHHHHHHHHHH-C-CCEEEEECCCCCH--------
Q ss_conf             99874999999911378--------------------8521----99999999980-9-9499997389998--------
Q 029661           42 DFIKAGADIVSVHCEQS--------------------STIH----LHRTLNQIKDL-G-AKAGVVLNPATSL--------   87 (190)
Q Consensus        42 ~~~~~Gad~i~vh~e~~--------------------~~~~----~~~~i~~i~~~-g-~~~gl~i~~~t~~--------   87 (190)
                      .+.++|.|+|-+|.-.+                    +.++    +.++++.+|+. | ..+++-+++.+..        
T Consensus       166 rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~  245 (364)
T d1icpa_         166 NAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNP  245 (364)
T ss_dssp             HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCH
T ss_pred             HHHHHCCCEEEEECCCCCHHHCEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCH
T ss_conf             99983998689830576213120011007767544420432016789876542012488646688604322467767516


Q ss_pred             H----HHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCC-CCEEEE
Q ss_conf             8----89974311365799733068887533224589999999987632999808982788911589999809-979998
Q 029661           88 S----AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANALVA  162 (190)
Q Consensus        88 ~----~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aG-ad~iVv  162 (190)
                      +    .....+...|+..+-...|......+.....+....+++..     ..++.+.||++++.+.+++..| +|.+-+
T Consensus       246 ~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~vi~~g~~~~~~ae~~l~~g~aD~V~~  320 (364)
T d1icpa_         246 TALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAY-----KGTFIVAGGYDREDGNRALIEDRADLVAY  320 (364)
T ss_dssp             HHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHC-----CSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC-----CCCEEEECCCCHHHHHHHHHCCCCCEEHH
T ss_conf             7778899877520322456651586554554554478899999864-----78789978989999999998699765056


Q ss_pred             CCCCCCCCCHHHHHH
Q ss_conf             642569889999999
Q 029661          163 GSAVFGAKDYAEAIK  177 (190)
Q Consensus       163 Gsai~~~~d~~~~~~  177 (190)
                      ||++...+|+-..++
T Consensus       321 gR~~iadPd~~~k~~  335 (364)
T d1icpa_         321 GRLFISNPDLPKRFE  335 (364)
T ss_dssp             SHHHHHCTTHHHHHH
T ss_pred             HHHHHHCCCHHHHHH
T ss_conf             799997904999997

>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.85  E-value=0.011  Score=31.91  Aligned_cols=134  Identities=15%  Similarity=0.223  Sum_probs=83.3

Q ss_pred             HHHHHHCCCCEEEE-CCC-----CCCCCHHHHHHHHHHHHCCCEEEEECCCCCH-------HHHH----HHHCCC---C-
Q ss_conf             99998749999999-113-----7885219999999998099499997389998-------8899----743113---6-
Q 029661           40 VPDFIKAGADIVSV-HCE-----QSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-------SAIE----CVLDVV---D-   98 (190)
Q Consensus        40 i~~~~~~Gad~i~v-h~e-----~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~-------~~~~----~~~~~~---d-   98 (190)
                      .+++.+.|++++.+ |.|     ..+.+.+.+-++.+.+.|+.+.+.+.=+...       +.+.    ..+..+   + 
T Consensus        79 ~~mLkd~G~~yvIiGHSERR~~~~Et~~~i~~K~~~~~~~~l~pI~CiGE~~~~~~~~~~~~~l~~Ql~~~~~~~~~~~~  158 (249)
T d1kv5a_          79 LPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADW  158 (249)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHTCCGGGG
T ss_pred             HHHHHHHCCCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             88887636422100346443320431788888999998617705898536411000130578878888765202320131


Q ss_pred             EEEEEEEEC----CCCCCCCCHHHHHH-HHHHHHHHHHC-----CCCCEEEEECCCCCCCHHHHHHC-CCCEEEECCCCC
Q ss_conf             579973306----88875332245899-99999987632-----99980898278891158999980-997999864256
Q 029661           99 LVLIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVF  167 (190)
Q Consensus        99 ~vl~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~~-----~~~~~i~vdGGI~~~~~~~~~~a-Gad~iVvGsai~  167 (190)
                      .-++.+-+|    |+ |+...+..... ...+|+.+.+.     ..+.+|..+|+++++|+.++... ++|++-+|++-.
T Consensus       159 ~~iiIAYEPvWAIGt-G~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~~~ilYGGSV~~~N~~~i~~~~~vDG~LVGgASl  237 (249)
T d1kv5a_         159 AKVVIAYEPVWAIGT-GKVATPQQAQEAHALISSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASL  237 (249)
T ss_dssp             GGEEEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEESSCCTTTHHHHHTSTTCCEEEESGGGG
T ss_pred             CCEEEECCCEECCCC-CCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECHHHC
T ss_conf             245885175211365-5555523555566777788887507434377748971897986999996688999789522756


Q ss_pred             CCCCHHHH
Q ss_conf             98899999
Q 029661          168 GAKDYAEA  175 (190)
Q Consensus       168 ~~~d~~~~  175 (190)
                      ++ +..+-
T Consensus       238 ~~-eF~~I  244 (249)
T d1kv5a_         238 KP-EFVDI  244 (249)
T ss_dssp             ST-THHHH
T ss_pred             CH-HHHHH
T ss_conf             98-99999

>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.79  E-value=0.012  Score=31.65  Aligned_cols=127  Identities=16%  Similarity=0.195  Sum_probs=81.4

Q ss_pred             HHHHHHCCCCEEEE-C-------CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC-------HHH----HHHHHCCCC--
Q ss_conf             99998749999999-1-------13788521999999999809949999738999-------888----997431136--
Q 029661           40 VPDFIKAGADIVSV-H-------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LSA----IECVLDVVD--   98 (190)
Q Consensus        40 i~~~~~~Gad~i~v-h-------~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~-------~~~----~~~~~~~~d--   98 (190)
                      ..++.+.|++++.+ |       .|  +++.+.+-++.+.++|+.|.+.+.=+-.       .+.    ++..+..++  
T Consensus        78 a~mL~d~G~~~viiGHSERR~~f~E--td~~i~~K~~~al~~gl~pIlCVGEt~~er~~g~t~~~l~~Ql~~~l~~~~~~  155 (246)
T d1r2ra_          78 PGMIKDCGATWVVLGHSERRHVFGE--SDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDW  155 (246)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTSCC--CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHTCSCG
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHCCC--CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             9999987631554322443444078--79999999987621685389985474201234322346799998876233434


Q ss_pred             EEEEEEEEC----CCCCCCCCHHHHHH-HHHHHHHHHHC-----CCCCEEEEECCCCCCCHHHHHH-CCCCEEEECCCCC
Q ss_conf             579973306----88875332245899-99999987632-----9998089827889115899998-0997999864256
Q 029661           99 LVLIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVF  167 (190)
Q Consensus        99 ~vl~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~~-----~~~~~i~vdGGI~~~~~~~~~~-aGad~iVvGsai~  167 (190)
                      .-++.+-+|    |+ |....+..... ...+|+.+.+.     ..+.+|..+|+++++|+.++.. .++|++-+|+|-.
T Consensus       156 ~~iiiAYEPvWAIGT-G~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vDG~LVGgASL  234 (246)
T d1r2ra_         156 SKVVLAYEPVWAIGT-GKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASL  234 (246)
T ss_dssp             GGEEEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCTTTHHHHHTSTTCCEEEESGGGG
T ss_pred             CEEEEECCCEEECCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCCCCCEEEEEHHHC
T ss_conf             428996375653268-8776605566667887778887656765386658860897987999995688989688502648


Q ss_pred             CC
Q ss_conf             98
Q 029661          168 GA  169 (190)
Q Consensus       168 ~~  169 (190)
                      ..
T Consensus       235 ~~  236 (246)
T d1r2ra_         235 KP  236 (246)
T ss_dssp             ST
T ss_pred             CH
T ss_conf             87

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.75  E-value=0.00038  Score=40.15  Aligned_cols=86  Identities=13%  Similarity=0.245  Sum_probs=52.4

Q ss_pred             CCCCCHHHHHHHHCC-CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCE
Q ss_conf             389998889974311-3657997330688875332245899999999876329998089827889-11589999809979
Q 029661           82 NPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANA  159 (190)
Q Consensus        82 ~~~t~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~  159 (190)
                      ....|++..+.|.+. +|.+.+.-.+....+........   ..+++.      ..+++++|||+ .+++..+.+.|+|.
T Consensus        28 y~~dP~~~a~~~~~~g~~~l~ivDLda~~~~~~~~~~~~---~~~~~~------~~pl~~gGGI~s~~~~~~~~~~Ga~k   98 (241)
T d1qo2a_          28 YEKDPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVL---EKLSEF------AEHIQIGGGIRSLDYAEKLRKLGYRR   98 (241)
T ss_dssp             ESSCHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHH---HHGGGG------GGGEEEESSCCSHHHHHHHHHTTCCE
T ss_pred             ECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHE---EHHCCC------CCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             788999999999987998799995245201477502210---000135------56435323210000011112333326


Q ss_pred             EEECCCCCCCCCHHHHH
Q ss_conf             99864256988999999
Q 029661          160 LVAGSAVFGAKDYAEAI  176 (190)
Q Consensus       160 iVvGsai~~~~d~~~~~  176 (190)
                      +++||++++.++..+..
T Consensus        99 Vvi~s~~~~~~~~~~~~  115 (241)
T d1qo2a_          99 QIVSSKVLEDPSFLKSL  115 (241)
T ss_dssp             EEECHHHHHCTTHHHHH
T ss_pred             EECCCCCCCCCHHHHHH
T ss_conf             84275233571221222

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.016  Score=30.99  Aligned_cols=149  Identities=11%  Similarity=0.079  Sum_probs=91.8

Q ss_pred             CCHHHHHHHC-CC--CCCCEEEEEEECCH-HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH---------------
Q ss_conf             7988898703-47--99937888811295-88999998749999999113788521999999999---------------
Q 029661           11 IGPLVVDALR-PV--TDLPLDVHLMIVEP-EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK---------------   71 (190)
Q Consensus        11 ~g~~~i~~i~-~~--~~~~i~vhlmv~~p-~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~---------------   71 (190)
                      ++...+..+- ..  .+....+  -+-.+ ..++..+.+.|+++|.++.-. +.++..++++.+|               
T Consensus        50 ~~~~~~~~~i~a~~~~g~~~~V--Rvp~~~~~~i~~~LD~Ga~GIivP~v~-s~eea~~~v~~~~ypP~G~Rg~~~~~~~  126 (253)
T d1dxea_          50 NDISTFIPQLMALKGSASAPVV--RVPTNEPVIIKRLLDIGFYNFLIPFVE-TKEEAELAVASTRYPPEGIRGVSVSHRA  126 (253)
T ss_dssp             CCHHHHHHHHHHTTTCSSEEEE--ECSSSCHHHHHHHHHTTCCEEEESCCC-SHHHHHHHHHTTSCTTTCCCCCCSSSGG
T ss_pred             CCHHHHHHHHHHHHCCCCCCEE--CCCCCCHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHEECCCCCCCCCCCEEC
T ss_conf             8756777899998556997242--078787899999984696689730259-9999999999623599998676743001


Q ss_pred             -----------HHCCC--EEEEECCCCCHHHHHHHHC--CCCEEEE----EEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             -----------80994--9999738999888997431--1365799----733068887533224589999999987632
Q 029661           72 -----------DLGAK--AGVVLNPATSLSAIECVLD--VVDLVLI----MSVNPGFGGQSFIESQVKKISDLRRMCLEK  132 (190)
Q Consensus        72 -----------~~g~~--~gl~i~~~t~~~~~~~~~~--~~d~vl~----m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~  132 (190)
                                 ..+-.  +.+-|....-++.+++++.  .+|.+.+    ++..-|.-||...|...+-+.++.+...+.
T Consensus       127 ~~~~~~~~~~~~~n~~~~vi~~IEt~~av~nleeI~av~giD~i~iGp~DLs~slG~~g~~~~p~v~~ai~~v~~~~~~~  206 (253)
T d1dxea_         127 NMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAH  206 (253)
T ss_dssp             GGGGTSTTHHHHHTTSCEEEEEECSHHHHHTHHHHHTSTTCCEEEECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             22464321011246656887522567899878887334797569972575776436788878906899999999999984


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHCCCCEEEECCC
Q ss_conf             999808982788911589999809979998642
Q 029661          133 GVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA  165 (190)
Q Consensus       133 ~~~~~i~vdGGI~~~~~~~~~~aGad~iVvGsa  165 (190)
                      +...  .+- .-+++.++++.+.|++.++.|+=
T Consensus       207 gk~~--g~~-~~~~~~~~~~~~~G~~~i~~g~D  236 (253)
T d1dxea_         207 GKPS--GIL-APVEADARRYLEWGATFVAVGSD  236 (253)
T ss_dssp             TCCE--EEE-CCSHHHHHHHHHTTCCEEEEEEH
T ss_pred             CCCE--EEE-CCCHHHHHHHHHCCCCEEEEHHH
T ss_conf             9976--883-69999999999749989996699

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=96.56  E-value=0.018  Score=30.70  Aligned_cols=128  Identities=16%  Similarity=0.268  Sum_probs=76.2

Q ss_pred             HHHHHCCCCEEEECCCCC--------------------CCC----HHHHHHHHHHHH-CC-CEEEEECCC----------
Q ss_conf             999874999999911378--------------------852----199999999980-99-499997389----------
Q 029661           41 PDFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-GA-KAGVVLNPA----------   84 (190)
Q Consensus        41 ~~~~~~Gad~i~vh~e~~--------------------~~~----~~~~~i~~i~~~-g~-~~gl~i~~~----------   84 (190)
                      +.+.++|.|+|-+|.-.+                    +.+    =+.++++.+|+. |. .+++-+++.          
T Consensus       167 ~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg  246 (363)
T d1vyra_         167 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGP  246 (363)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCT
T ss_pred             HHHHHHCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHCC
T ss_conf             99997513403451467103111446766566654464033444767888765553047887412311323311100013


Q ss_pred             CCHHHHHHHH---C--CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCC-CC
Q ss_conf             9988899743---1--1365799733068887533224589999999987632999808982788911589999809-97
Q 029661           85 TSLSAIECVL---D--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-AN  158 (190)
Q Consensus        85 t~~~~~~~~~---~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aG-ad  158 (190)
                      .+.+...+++   .  .+|++.+-.... .++.++.....   +.+++.     .+..+...|+++++.+.++++.| +|
T Consensus       247 ~~~~e~~~~~~~l~~~gvd~i~vs~~~~-~~~~~~~~~~~---~~~~~~-----~~~~vi~~G~~t~~~ae~~l~~G~~D  317 (363)
T d1vyra_         247 NEEADALYLIEELAKRGIAYLHMSETDL-AGGKPYSEAFR---QKVRER-----FHGVIIGAGAYTAEKAEDLIGKGLID  317 (363)
T ss_dssp             THHHHHHHHHHHHHHTTCSEEEEECCBT-TBCCCCCHHHH---HHHHHH-----CCSEEEEESSCCHHHHHHHHHTTSCS
T ss_pred             CCHHHHHHHHHHHHHCCCEEEECCCCCC-CCCCCCCHHHH---HHHHHH-----CCCEEEECCCCCHHHHHHHHHCCCCC
T ss_conf             3068899999987742980662034776-67865328889---998986-----58539966899999999999879965


Q ss_pred             EEEECCCCCCCCCHHHHHH
Q ss_conf             9998642569889999999
Q 029661          159 ALVAGSAVFGAKDYAEAIK  177 (190)
Q Consensus       159 ~iVvGsai~~~~d~~~~~~  177 (190)
                      .+-+||+++..+|+-..++
T Consensus       318 lV~~gR~liadP~~~~K~~  336 (363)
T d1vyra_         318 AVAFGRDYIANPDLVARLQ  336 (363)
T ss_dssp             EEEESHHHHHCTTHHHHHH
T ss_pred             EEHHHHHHHHCCCHHHHHH
T ss_conf             1155499987921999998

>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.43  E-value=0.022  Score=30.23  Aligned_cols=135  Identities=18%  Similarity=0.280  Sum_probs=84.5

Q ss_pred             HHHHHHCCCCEEEE-CCC-----CCCCCHHHHHHHHHHHHCCCEEEEECCCCCH-------HHHHH----HHCCCCE--E
Q ss_conf             99998749999999-113-----7885219999999998099499997389998-------88997----4311365--7
Q 029661           40 VPDFIKAGADIVSV-HCE-----QSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-------SAIEC----VLDVVDL--V  100 (190)
Q Consensus        40 i~~~~~~Gad~i~v-h~e-----~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~-------~~~~~----~~~~~d~--v  100 (190)
                      .+++.+.|++++.+ |.|     ..+++.+.+-++.+.+.|+.|.+.+.=+...       +.+..    .+..++.  -
T Consensus        78 a~mLkd~G~~~viiGHSERR~~~~Etd~~i~~K~~~al~~~l~pI~CiGE~~~~~~~~~~~~~~~~Ql~~~l~~~~~~~~  157 (246)
T d1o5xa_          78 AEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDN  157 (246)
T ss_dssp             HHHHHHTTCCEEEECCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHTTGGGCCCTTS
T ss_pred             HHHHHHCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             88874226623432352110331552487999999998713562899842443321013577888888865431035554


Q ss_pred             EEEEEEC----CCCCCCCCHHHHHH-HHHHHHHHHHC-----CCCCEEEEECCCCCCCHHHHHH-CCCCEEEECCCCCCC
Q ss_conf             9973306----88875332245899-99999987632-----9998089827889115899998-099799986425698
Q 029661          101 LIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVFGA  169 (190)
Q Consensus       101 l~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~~-----~~~~~i~vdGGI~~~~~~~~~~-aGad~iVvGsai~~~  169 (190)
                      ++.+-+|    |+ |+...+..... .+.+|+.+.+.     ..+.+|..+|+++++|+.++.. .++|++-+|+|-.. 
T Consensus       158 iiIAYEPvWAIGT-G~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~idG~LVG~ASL~-  235 (246)
T d1o5xa_         158 VILVYEPLWAIGT-GKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-  235 (246)
T ss_dssp             EEEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCCCTTTHHHHHTSTTCCEEEECGGGGS-
T ss_pred             EEEEECCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCEEEEECCCCC-
T ss_conf             7999665001258-98766401100146777788777667544864289828989759999956889897996232088-


Q ss_pred             CCHHHHH
Q ss_conf             8999999
Q 029661          170 KDYAEAI  176 (190)
Q Consensus       170 ~d~~~~~  176 (190)
                      ++..+-+
T Consensus       236 ~~F~~Ii  242 (246)
T d1o5xa_         236 ESFVDII  242 (246)
T ss_dssp             TTHHHHH
T ss_pred             HHHHHHH
T ss_conf             8999999

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=96.41  E-value=0.022  Score=30.16  Aligned_cols=128  Identities=19%  Similarity=0.253  Sum_probs=85.6

Q ss_pred             HHHHH--HHCCCCEEEEC--CCCCCCCHHHHHHHHHHHH--CCCEEEEECCCCCHHHHHHHH--CCCCEEEEEEEECCCC
Q ss_conf             99999--87499999991--1378852199999999980--994999973899988899743--1136579973306888
Q 029661           39 RVPDF--IKAGADIVSVH--CEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVL--DVVDLVLIMSVNPGFG  110 (190)
Q Consensus        39 ~i~~~--~~~Gad~i~vh--~e~~~~~~~~~~i~~i~~~--g~~~gl~i~~~t~~~~~~~~~--~~~d~vl~m~v~pG~~  110 (190)
                      .+...  ...|.|.++-.  .+..+.+++.+.+..+|+.  |..+++-+.....+..+....  ..+|+|.+=+-+-|++
T Consensus       530 ~IA~~R~~~~G~~~iSP~~h~di~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTG  609 (771)
T d1ea0a2         530 MIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTG  609 (771)
T ss_dssp             HHHHHHTCCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCS
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             99976389999885578778889999999999999996279998799987767489999998735898899716887666


Q ss_pred             CCCC--CHHH----HHHHHHHHHHHHHCC--CCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCC
Q ss_conf             7533--2245----899999999876329--998089827889-115899998099799986425
Q 029661          111 GQSF--IESQ----VKKISDLRRMCLEKG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAV  166 (190)
Q Consensus       111 gq~~--~~~~----~~ki~~~~~~~~~~~--~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai  166 (190)
                      .-+.  ...+    ..-+.++++.+.+.+  ..+.+.++||+. +..+.++...|||.+-.|++.
T Consensus       610 Aap~~~~d~~GlP~~~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~  674 (771)
T d1ea0a2         610 ASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTAS  674 (771)
T ss_dssp             SEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHH
T ss_pred             CCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf             66677760687379999999999999769987539997089888999999998378916776999

>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.41  E-value=0.021  Score=30.33  Aligned_cols=138  Identities=17%  Similarity=0.242  Sum_probs=84.3

Q ss_pred             HHHHHHCCCCEEEE-CCC-----CCCCCHHHHHHHHHHHHCCCEEEEECCCCC-------HHHHHHH----HCCCC--E-
Q ss_conf             99998749999999-113-----788521999999999809949999738999-------8889974----31136--5-
Q 029661           40 VPDFIKAGADIVSV-HCE-----QSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LSAIECV----LDVVD--L-   99 (190)
Q Consensus        40 i~~~~~~Gad~i~v-h~e-----~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~-------~~~~~~~----~~~~d--~-   99 (190)
                      .+++.+.|++++.+ |.|     ..+.+.+.+-++.+.++|+.|.+.+.=+..       .+.+...    +...+  . 
T Consensus        80 a~mL~d~G~~~viiGHSERR~~~~Etd~~i~~K~~~al~~gl~pIlCIGE~~~~r~~g~t~~~l~~Ql~~~l~~~~~~~~  159 (252)
T d1b9ba_          80 PLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEA  159 (252)
T ss_dssp             HHHHHTTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHCCHHEECCHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCHHHHHHHHHHHHHCCCCHHCC
T ss_conf             99998764012101432333420466789999999999879918999445300343054377999998864202111022


Q ss_pred             -EEEEEEEC----CCCCCCCCHHHHHH-HHHHHHHHHHCC-----CCCEEEEECCCCCCCHHHHHH-CCCCEEEECCCCC
Q ss_conf             -79973306----88875332245899-999999876329-----998089827889115899998-0997999864256
Q 029661          100 -VLIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLEKG-----VNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVF  167 (190)
Q Consensus       100 -vl~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~~~-----~~~~i~vdGGI~~~~~~~~~~-aGad~iVvGsai~  167 (190)
                       -++.+-+|    |+ |+...+..... ...+|+.+.+..     .+.+|..+|+++++|+.++.. .++|++-+|+|-.
T Consensus       160 ~~iiIAYEPvWAIGt-G~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vDG~LVGgASL  238 (252)
T d1b9ba_         160 KRVVIAYEPVWAIGT-GRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASL  238 (252)
T ss_dssp             TTCEEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEESSCCHHHHTTTSSSTTCCEEEESGGGT
T ss_pred             CCEEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCEEEEECHHC
T ss_conf             345998555213566-6677868888878888999987506000476428971898987999985677999799612208


Q ss_pred             CCCCHHHHHHHH
Q ss_conf             988999999999
Q 029661          168 GAKDYAEAIKGI  179 (190)
Q Consensus       168 ~~~d~~~~~~~l  179 (190)
                      . ++..+-++..
T Consensus       239 ~-~~F~~I~~~~  249 (252)
T d1b9ba_         239 K-ESFIELARIM  249 (252)
T ss_dssp             S-THHHHHHHHH
T ss_pred             C-HHHHHHHHHH
T ss_conf             8-7899999998

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0049  Score=33.87  Aligned_cols=161  Identities=21%  Similarity=0.151  Sum_probs=88.2

Q ss_pred             HHHHCCC-CCCCEEEEEEECC-------HHHHHH--HHHHCCCCEEEECCCCCCC----------CHHHHHHHHH-----
Q ss_conf             9870347-9993788881129-------588999--9987499999991137885----------2199999999-----
Q 029661           16 VDALRPV-TDLPLDVHLMIVE-------PEQRVP--DFIKAGADIVSVHCEQSST----------IHLHRTLNQI-----   70 (190)
Q Consensus        16 i~~i~~~-~~~~i~vhlmv~~-------p~~~i~--~~~~~Gad~i~vh~e~~~~----------~~~~~~i~~i-----   70 (190)
                      .+.++.. .+.++-+-+....       ..+|..  .....++|++.+-..+ +-          ..+...+..+     
T Consensus       124 ~~~~~~~~~~~~l~v~I~~~~~~~~~~a~~d~~~~~~~~~~~ad~iElNiSc-PN~~g~~~~~~~~~l~~~~~~~~~~~~  202 (336)
T d1f76a_         124 VENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISS-PNTPGLRTLQYGEALDDLLTAIKNKQN  202 (336)
T ss_dssp             HHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCC-SSSTTGGGGGSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC-HHHHCCCCCCCCHHHCCCHHHHHHHHH
T ss_conf             9974103566158999932677604778999999999741112033211020-323200111342000000012332345


Q ss_pred             ----HHH-CCCEEEEECCCCCHHHHHHHHCC-----CCEEEEEEE---E------------CCCCCCCCCHHHHHHHHHH
Q ss_conf             ----980-99499997389998889974311-----365799733---0------------6888753322458999999
Q 029661           71 ----KDL-GAKAGVVLNPATSLSAIECVLDV-----VDLVLIMSV---N------------PGFGGQSFIESQVKKISDL  125 (190)
Q Consensus        71 ----~~~-g~~~gl~i~~~t~~~~~~~~~~~-----~d~vl~m~v---~------------pG~~gq~~~~~~~~ki~~~  125 (190)
                          +.. ..-+.+-++|++..+.+......     ++-+...-.   .            -|.+|.+..+.+++.++++
T Consensus       203 ~~~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v  282 (336)
T d1f76a_         203 DLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRL  282 (336)
T ss_dssp             HHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             56552057677402331023433346667788863853021000110023001443234554233320589999999999


Q ss_pred             HHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             99876329998089827889-1158999980997999864256988999999999971
Q 029661          126 RRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS  182 (190)
Q Consensus       126 ~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~~d~~~~~~~l~~~  182 (190)
                      ++...   .+++|.--|||. .+++.+++.+||+.+=+||+++. ++|. .++++.+.
T Consensus       283 ~~~~~---~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~-~Gp~-ii~~I~~e  335 (336)
T d1f76a_         283 SLELN---GRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF-KGPP-LIKEIVTH  335 (336)
T ss_dssp             HHHHT---TSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH-HCHH-HHHHHHHH
T ss_pred             HHHCC---CCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH-CCHH-HHHHHHHH
T ss_conf             99808---997299989979999999999809969999789995-2938-99999830

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.34  E-value=0.025  Score=29.93  Aligned_cols=157  Identities=15%  Similarity=0.066  Sum_probs=88.1

Q ss_pred             CCCCEEEEEEECCHHH-HHHHHHHCCCCEEEECCCCCC----------CCHHHHHHHHHHHH-CCCEEEE-ECCCCCHHH
Q ss_conf             9993788881129588-999998749999999113788----------52199999999980-9949999-738999888
Q 029661           23 TDLPLDVHLMIVEPEQ-RVPDFIKAGADIVSVHCEQSS----------TIHLHRTLNQIKDL-GAKAGVV-LNPATSLSA   89 (190)
Q Consensus        23 ~~~~i~vhlmv~~p~~-~i~~~~~~Gad~i~vh~e~~~----------~~~~~~~i~~i~~~-g~~~gl~-i~~~t~~~~   89 (190)
                      +..+..+......... ..+.....|.+.+.+|.....          .....+.++++++. +..+.+- +......+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~~~  174 (329)
T d1p0ka_          95 PNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKAS  174 (329)
T ss_dssp             SSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHH
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHH
T ss_conf             76338885044304899999999769988983144430100014664323569999999997589857886377632999


Q ss_pred             HHHHHC-CCCEEEEEEEECCCCC---------------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHH
Q ss_conf             997431-1365799733068887---------------5332245899999999876329998089827889-1158999
Q 029661           90 IECVLD-VVDLVLIMSVNPGFGG---------------QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKV  152 (190)
Q Consensus        90 ~~~~~~-~~d~vl~m~v~pG~~g---------------q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~  152 (190)
                      ...... .+|.+.+- -+.|...               +.+.......+.+.+...    .+++|.+||||+ ...+-++
T Consensus       175 a~~~~~~GaD~i~v~-~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~----~~v~viadGGIr~g~Dv~KA  249 (329)
T d1p0ka_         175 AGKLYEAGAAAVDIG-GYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEF----PASTMIASGGLQDALDVAKA  249 (329)
T ss_dssp             HHHHHHHTCSEEEEE-C---------------CCGGGGTTCSCCHHHHHHHHHHHC----TTSEEEEESSCCSHHHHHHH
T ss_pred             HHHHHHCCCCEEEEC-CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHC----CCCEEEECCCCCCHHHHHHH
T ss_conf             999996479999976-7898875455111203676640676899999999998415----89169973884639999999


Q ss_pred             HHCCCCEEEECCCCCCC------CCHHHHHHHHHHHHC
Q ss_conf             98099799986425698------899999999997103
Q 029661          153 IEAGANALVAGSAVFGA------KDYAEAIKGIKTSKR  184 (190)
Q Consensus       153 ~~aGad~iVvGsai~~~------~d~~~~~~~l~~~~~  184 (190)
                      +..|||.+-+||....+      +.....++.|+..++
T Consensus       250 lalGAdaV~iGr~~l~al~~~G~~gv~~~l~~l~~el~  287 (329)
T d1p0ka_         250 IALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELK  287 (329)
T ss_dssp             HHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             98299932024788887614779999999999999999

>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermotoga maritima [TaxId: 2336]

Probab=96.25  E-value=0.028  Score=29.62  Aligned_cols=150  Identities=19%  Similarity=0.203  Sum_probs=87.6

Q ss_pred             CCHHHHHHHCC-CCCCCEEEEEEEC-CHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf             79888987034-7999378888112-958899999874999999911378852199999999980994999973899988
Q 029661           11 IGPLVVDALRP-VTDLPLDVHLMIV-EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS   88 (190)
Q Consensus        11 ~g~~~i~~i~~-~~~~~i~vhlmv~-~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~   88 (190)
                      ..++..++|.+ .+....-+=..+. ++....+.+...+.|++-+|..-    +. +.++.+++. .....++.... ..
T Consensus        38 Vs~~~a~~i~~~~~~~~~~V~V~v~~~~~~i~~~~~~~~~~~vQlhg~e----~~-~~~~~~~~~-~~~~~~~~~~~-~~  110 (205)
T d1nsja_          38 ISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAVQLHGEE----PI-ELCRKIAER-ILVIKAVGVSN-ER  110 (205)
T ss_dssp             CCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSEEEECSCC----CH-HHHHHHHTT-SEEEEEEEESS-HH
T ss_pred             CCHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCHHCCCHH----HH-HHHHHCCCC-EEEEEECCCCC-HH
T ss_conf             0889977777652223323222246077777765442023310002126----68-887510110-01233001321-67


Q ss_pred             HHHHHHCC-CCEEEEEEEEC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH-CCCCEEEECC
Q ss_conf             89974311-36579973306--88875332245899999999876329998089827889115899998-0997999864
Q 029661           89 AIECVLDV-VDLVLIMSVNP--GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGS  164 (190)
Q Consensus        89 ~~~~~~~~-~d~vl~m~v~p--G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~-aGad~iVvGs  164 (190)
                      .+...... .+.+++-+..+  |..|+.|+-..+..+.      ..   ..++...|||+++|+.++++ .++.++=+-|
T Consensus       111 ~~~~~~~~~~~~~l~d~~~~~~GGtG~~~dw~~~~~~~------~~---~~~~~LAGGl~~~Nv~~ai~~~~p~gvDvsS  181 (205)
T d1nsja_         111 DMERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYR------DR---FRYLVLSGGLNPENVRSAIDVVRPFAVDVSS  181 (205)
T ss_dssp             HHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGG------GG---SSCEEEESSCCTTTHHHHHHHHCCSEEEESG
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHCCCCH------HC---CCCEEEECCCCHHHHHHHHHHHCCCEEEECC
T ss_conf             77787640210132113344579987621454323210------11---4633431678989999999975899899818


Q ss_pred             CCCCC---CCHHHHH
Q ss_conf             25698---8999999
Q 029661          165 AVFGA---KDYAEAI  176 (190)
Q Consensus       165 ai~~~---~d~~~~~  176 (190)
                      .+=.+   .|+....
T Consensus       182 gvE~~~G~KD~~ki~  196 (205)
T d1nsja_         182 GVEAFPGKKDHDSIK  196 (205)
T ss_dssp             GGEEETTEECHHHHH
T ss_pred             CCCCCCCCCCHHHHH
T ss_conf             526789953999999

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=96.17  E-value=0.031  Score=29.39  Aligned_cols=152  Identities=17%  Similarity=0.213  Sum_probs=89.6

Q ss_pred             CHHHHHHHCCC-CCCCEEEEEEECCHHHHHH--HHHHCCCCEEEECCCC----------CC--CC---HHHHHHHHHHH-
Q ss_conf             98889870347-9993788881129588999--9987499999991137----------88--52---19999999998-
Q 029661           12 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVP--DFIKAGADIVSVHCEQ----------SS--TI---HLHRTLNQIKD-   72 (190)
Q Consensus        12 g~~~i~~i~~~-~~~~i~vhlmv~~p~~~i~--~~~~~Gad~i~vh~e~----------~~--~~---~~~~~i~~i~~-   72 (190)
                      +....+.+... .+.|+.+.|.-.||....+  .+.+.|+|.|-+-.-+          |+  +.   -..+.++.+++ 
T Consensus        41 ~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~  120 (305)
T d1vhna_          41 NSQKTEELLPQPHERNVAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKS  120 (305)
T ss_dssp             TCHHHHHHSCCTTCTTEEEEEECSCHHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHEEEEEEEEEECCHHHCCCCCCEEECCCHHHHHHHHHHHHHH
T ss_conf             98656864148777874899952626665411110021103666898744202214453312125889999886666641


Q ss_pred             HCCCEEEEECCCCCH----HHHHHHHC-CCCEEEEEEEECCCCCCCCC-HHHHHHHHHHHHHHHHCCCCCEEEEECCCC-
Q ss_conf             099499997389998----88997431-13657997330688875332-245899999999876329998089827889-
Q 029661           73 LGAKAGVVLNPATSL----SAIECVLD-VVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-  145 (190)
Q Consensus        73 ~g~~~gl~i~~~t~~----~~~~~~~~-~~d~vl~m~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-  145 (190)
                      .+..+.+=+......    +.+..+.+ .++.+.+   |+.+..|.+. +..++.|.+++       .++++.+-|||. 
T Consensus       121 ~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itv---H~Rt~~q~~~~~a~~~~i~~~~-------~~ipvi~NGdI~s  190 (305)
T d1vhna_         121 VSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFI---HTRTVVQSFTGRAEWKALSVLE-------KRIPTFVSGDIFT  190 (305)
T ss_dssp             CSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEE---ESSCTTTTTSSCCCGGGGGGSC-------CSSCEEEESSCCS
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE---CHHHHHHCCCCCHHHHHHHHHH-------HHHHHHCCCCCCC
T ss_conf             13333345444765311247889999829727873---0124542133200346777663-------3332103554365


Q ss_pred             CCCHHHHHH-CCCCEEEECCCCCCCCCHH
Q ss_conf             115899998-0997999864256988999
Q 029661          146 PKNAYKVIE-AGANALVAGSAVFGAKDYA  173 (190)
Q Consensus       146 ~~~~~~~~~-aGad~iVvGsai~~~~d~~  173 (190)
                      .+++....+ .|+|++-+|++.++.+-.-
T Consensus       191 ~~d~~~~l~~tg~dgVMiGRgal~nP~if  219 (305)
T d1vhna_         191 PEDAKRALEESGCDGLLVARGAIGRPWIF  219 (305)
T ss_dssp             HHHHHHHHHHHCCSEEEESGGGTTCTTHH
T ss_pred             HHHHHHHHHHCCCCEEEHHHHHHHHHHHH
T ss_conf             87899999840999671367998755676

>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.16  E-value=0.031  Score=29.38  Aligned_cols=129  Identities=18%  Similarity=0.211  Sum_probs=81.1

Q ss_pred             HHHHHHCCCCEEEE-CCCC-----CCCCHHHHHHHHHHHHCCCEEEEECCCC-------CHHHHHH----HHCC-CC-EE
Q ss_conf             99998749999999-1137-----8852199999999980994999973899-------9888997----4311-36-57
Q 029661           40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPAT-------SLSAIEC----VLDV-VD-LV  100 (190)
Q Consensus        40 i~~~~~~Gad~i~v-h~e~-----~~~~~~~~~i~~i~~~g~~~gl~i~~~t-------~~~~~~~----~~~~-~d-~v  100 (190)
                      ...+.+.|++++.+ |.|-     .+.+.+.+-++.+.+.|+.|.+.+.=+.       ..+.+..    .++. .+ .-
T Consensus        87 a~mL~d~G~~yviiGHSERR~~~~Etd~~i~~K~~~al~~~l~pIlCvGE~~~~~~~~~~~~~~~~Ql~~~~~~~~~~~~  166 (257)
T d1mo0a_          87 PAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWEN  166 (257)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTTCCSTT
T ss_pred             HHHHHHHCCCEEEECCHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHEEHHHHHCCCCCCCCCCC
T ss_conf             89999838661552342344664320899999999876236527885022333323320431003443211111125555


Q ss_pred             EEEEEEC----CCCCCCCCHHHHHH-HHHHHHHHHHC-----CCCCEEEEECCCCCCCHHHHHH-CCCCEEEECCCCCCC
Q ss_conf             9973306----88875332245899-99999987632-----9998089827889115899998-099799986425698
Q 029661          101 LIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVFGA  169 (190)
Q Consensus       101 l~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~~-----~~~~~i~vdGGI~~~~~~~~~~-aGad~iVvGsai~~~  169 (190)
                      ++.+.+|    | +|+...+..... ...+|+.+.+.     ..+.+|..+|+++++|+.++.. -++|++-+|+|-...
T Consensus       167 iiIAYEPvWAIG-tG~~a~~~~i~e~~~~Ir~~l~~~~~~~~~~~~~iLYGGSV~~~N~~~i~~~~~vDG~LVGgASL~~  245 (257)
T d1mo0a_         167 IVIAYEPVWAIG-TGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKP  245 (257)
T ss_dssp             EEEEECCGGGTT-TSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEESSCCTTTHHHHTTSTTCCEEEESGGGGST
T ss_pred             EEEEECCHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCCCEEEECCCCHHHHHHHHCCCCCCEEEEEHHHCCH
T ss_conf             189866542136-5544565666567888999999861775607665886288598799999568898869951475786

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.033  Score=29.18  Aligned_cols=129  Identities=11%  Similarity=0.081  Sum_probs=73.7

Q ss_pred             HHHHCCCCEEEECCCCC--------------------CCC----HHHHHHHHHHHH-C--CCEEEEECCCC------CHH
Q ss_conf             99874999999911378--------------------852----199999999980-9--94999973899------988
Q 029661           42 DFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-G--AKAGVVLNPAT------SLS   88 (190)
Q Consensus        42 ~~~~~Gad~i~vh~e~~--------------------~~~----~~~~~i~~i~~~-g--~~~gl~i~~~t------~~~   88 (190)
                      .+.++|.|+|-+|.-.+                    +.+    =+.++++.+|+. |  ..+++=+++..      ..+
T Consensus       149 ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~  228 (330)
T d1ps9a1         149 LAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFA  228 (330)
T ss_dssp             HHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHH
T ss_pred             HHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHH
T ss_conf             99984967564100367777888875245445667724766447799999999997388760575156100146888889


Q ss_pred             HHHHHH---C--CCCEEEEEEE-E----CCCCCCCCCHHHHHH-HHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCC
Q ss_conf             899743---1--1365799733-0----688875332245899-999999876329998089827889-11589999809
Q 029661           89 AIECVL---D--VVDLVLIMSV-N----PGFGGQSFIESQVKK-ISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG  156 (190)
Q Consensus        89 ~~~~~~---~--~~d~vl~m~v-~----pG~~gq~~~~~~~~k-i~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aG  156 (190)
                      ...+++   .  .+|++.+..- .    |.. ..++.+..... .+++++     ..+.++.+.|+|+ ++.+.++++.|
T Consensus       229 ~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~ik~-----~~~~pvi~~G~i~~~~~ae~~l~~g  302 (330)
T d1ps9a1         229 ETVELAQAIEAAGATIINTGIGWHEARIPTI-ATPVPRGAFSWVTRKLKG-----HVSLPLVTTNRINDPQVADDILSRG  302 (330)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEECBTTCSSCSS-STTSCTTTTHHHHHHHTT-----SCSSCEEECSSCCSHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHH-----HCCCEEEEECCCCCHHHHHHHHHCC
T ss_conf             9999999999850002211246544432334-777762067999999986-----4796199969989899999999879


Q ss_pred             -CCEEEECCCCCCCCCHHHHH
Q ss_conf             -97999864256988999999
Q 029661          157 -ANALVAGSAVFGAKDYAEAI  176 (190)
Q Consensus       157 -ad~iVvGsai~~~~d~~~~~  176 (190)
                       +|.+-+|+++...+|+-..+
T Consensus       303 ~~D~V~~gR~~iadP~~~~k~  323 (330)
T d1ps9a1         303 DADMVSMARPFLADAELLSKA  323 (330)
T ss_dssp             SCSEEEESTHHHHCTTHHHHH
T ss_pred             CCCHHHHHHHHHHCHHHHHHH
T ss_conf             966157629998691299998

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.039  Score=28.80  Aligned_cols=86  Identities=20%  Similarity=0.237  Sum_probs=51.8

Q ss_pred             CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC--CCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCC----
Q ss_conf             365799733068887533224589999999987632--9998089827889-115899998099799986425698----
Q 029661           97 VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEK--GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA----  169 (190)
Q Consensus        97 ~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~--~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~----  169 (190)
                      +|.+.+  .+.|.......+....-+.++.+.+...  +.+.+|-+||||+ --.+.+++..|||.+-+|+.+..+    
T Consensus       268 ~~~i~v--snhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigrp~L~~la~~  345 (414)
T d1kbia1         268 VSGVVL--SNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCY  345 (414)
T ss_dssp             CSEEEE--CCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHH
T ss_pred             CCCEEE--CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHC
T ss_conf             862452--232111111122000000246666641114885138853886767899999975899887768999999844


Q ss_pred             --CCHHHHHHHHHHHHC
Q ss_conf             --899999999997103
Q 029661          170 --KDYAEAIKGIKTSKR  184 (190)
Q Consensus       170 --~d~~~~~~~l~~~~~  184 (190)
                        +...+.++.|++.++
T Consensus       346 G~egv~~~l~~l~~EL~  362 (414)
T d1kbia1         346 GRNGVEKAIEILRDEIE  362 (414)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
T ss_conf             69999999999999999

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.92  E-value=0.021  Score=30.27  Aligned_cols=114  Identities=12%  Similarity=0.186  Sum_probs=64.0

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             9999999809949999738999888997431-136579973306888753322458999999998763299980898278
Q 029661           65 RTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG  143 (190)
Q Consensus        65 ~~i~~i~~~g~~~gl~i~~~t~~~~~~~~~~-~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG  143 (190)
                      +.+.++++.-..+.+.-.. ...+....... .+|.+.+ +-+.| ..-...+.+.+.+.+++....   .+.+|-+|||
T Consensus       207 ~~i~~l~~~~~~pii~Kgi-~~~~da~~a~~~G~d~i~v-snhgg-r~~d~~~~~~~~l~~i~~~~~---~~~~iiadGG  280 (349)
T d1tb3a1         207 NDLSLLQSITRLPIILKGI-LTKEDAELAMKHNVQGIVV-SNHGG-RQLDEVSASIDALREVVAAVK---GKIEVYMDGG  280 (349)
T ss_dssp             HHHHHHHTTCCSCEEEEEE-CSHHHHHHHHHTTCSEEEE-CCGGG-TSSCSBCCHHHHHHHHHHHHT---TSSEEEEESS
T ss_pred             HHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHCCCEEE-ECCCC-CCCCCCCCCHHHCCEEEECCC---CCEEEEECCC
T ss_conf             9999999854788300010-0068899999851210011-02110-000246531221210220157---8756886067


Q ss_pred             CC-CCCHHHHHHCCCCEEEECCCCCCC------CCHHHHHHHHHHHHC
Q ss_conf             89-115899998099799986425698------899999999997103
Q 029661          144 VG-PKNAYKVIEAGANALVAGSAVFGA------KDYAEAIKGIKTSKR  184 (190)
Q Consensus       144 I~-~~~~~~~~~aGad~iVvGsai~~~------~d~~~~~~~l~~~~~  184 (190)
                      |+ ...+-++...|||.+-+|+++..+      +...+.++.|++.++
T Consensus       281 IR~G~Dv~KALALGA~~V~igrp~L~~la~~G~~gv~~~l~~l~~EL~  328 (349)
T d1tb3a1         281 VRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELH  328 (349)
T ss_dssp             CCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             675778999998589989987699999996449999999999999999

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.87  E-value=0.042  Score=28.59  Aligned_cols=132  Identities=16%  Similarity=0.145  Sum_probs=73.3

Q ss_pred             HHHHHCCCCEEEECCCCC--------------------CCCH----HHHHHHHHHHH-C--CCEEEEECCCC--------
Q ss_conf             999874999999911378--------------------8521----99999999980-9--94999973899--------
Q 029661           41 PDFIKAGADIVSVHCEQS--------------------STIH----LHRTLNQIKDL-G--AKAGVVLNPAT--------   85 (190)
Q Consensus        41 ~~~~~~Gad~i~vh~e~~--------------------~~~~----~~~~i~~i~~~-g--~~~gl~i~~~t--------   85 (190)
                      +.+.++|.|+|-+|.-.+                    +.++    +.++++.+|+. |  ..+++=+++..        
T Consensus       156 ~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~  235 (340)
T d1djqa1         156 KRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIE  235 (340)
T ss_dssp             HHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCC
T ss_pred             HHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCC
T ss_conf             99987052400000356401100132015534533454677635789999998888875530011534500035577773


Q ss_pred             C---HHHHHHHH-CCCCEEEEEEEE---CCCC---CCCCC-HHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHH
Q ss_conf             9---88899743-113657997330---6888---75332-245899999999876329998089827889-11589999
Q 029661           86 S---LSAIECVL-DVVDLVLIMSVN---PGFG---GQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI  153 (190)
Q Consensus        86 ~---~~~~~~~~-~~~d~vl~m~v~---pG~~---gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~  153 (190)
                      .   ...+..+. ..+|++.+-...   .+..   .+... ...+...+.+++.     .+.++.+-|||+ ++.+.+++
T Consensus       236 ~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-----~~~pVi~~G~i~~~~~a~~~l  310 (340)
T d1djqa1         236 AEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQV-----SKKPVLGVGRYTDPEKMIEIV  310 (340)
T ss_dssp             TTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTT-----CSSCEEECSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-----CCCEEEEECCCCCHHHHHHHH
T ss_conf             446689998877631464423314401234555555557865457899999987-----598099989989999999999


Q ss_pred             HCC-CCEEEECCCCCCCCCHHHHHH
Q ss_conf             809-979998642569889999999
Q 029661          154 EAG-ANALVAGSAVFGAKDYAEAIK  177 (190)
Q Consensus       154 ~aG-ad~iVvGsai~~~~d~~~~~~  177 (190)
                      +.| +|.+-+|++++..+|+-..++
T Consensus       311 ~~G~aDlV~~gR~~iadPdl~~k~~  335 (340)
T d1djqa1         311 TKGYADIIGCARPSIADPFLPQKVE  335 (340)
T ss_dssp             HTTSCSBEEESHHHHHCTTHHHHHH
T ss_pred             HCCCCCCHHHHHHHHHCCCHHHHHH
T ss_conf             8799411145899997901999998

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Biotin synthase
domain: Biotin synthase
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.046  Score=28.37  Aligned_cols=152  Identities=16%  Similarity=0.204  Sum_probs=83.2

Q ss_pred             CCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCC-----------CCHHHHHHHHHHHHCCCEEE--EEC-CCCCHHHH
Q ss_conf             93788881129588999998749999999113788-----------52199999999980994999--973-89998889
Q 029661           25 LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS-----------TIHLHRTLNQIKDLGAKAGV--VLN-PATSLSAI   90 (190)
Q Consensus        25 ~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~-----------~~~~~~~i~~i~~~g~~~gl--~i~-~~t~~~~~   90 (190)
                      ..+.++....+. ..++.+.++|++.+.+..|+..           .++..++++.+++.|+++..  .+. ++|.-+.+
T Consensus       122 ~~~~~~~~~l~~-e~l~~lk~aG~~~i~~~iEs~~~~~~~~~~~~~~~~~~~~~~~a~~~Gi~~~~~~i~G~~et~~d~~  200 (312)
T d1r30a_         122 LEACMTLGTLSE-SQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRA  200 (312)
T ss_dssp             SEEEEECSSCCH-HHHHHHHHHCCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHH
T ss_pred             CEEEECCCCCHH-HHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEECCEEECCCCCHHHHH
T ss_conf             323201111039-9988865346006742112145553347899999999999999998346630025755768679999


Q ss_pred             HHHH---CC---CCEEEEEEEE--CCCCCCCC---CHHH-HHHHHHHHHHHHHCCCCCEEEEECC---CCCCCHHHHHHC
Q ss_conf             9743---11---3657997330--68887533---2245-8999999998763299980898278---891158999980
Q 029661           91 ECVL---DV---VDLVLIMSVN--PGFGGQSF---IESQ-VKKISDLRRMCLEKGVNPWIEVDGG---VGPKNAYKVIEA  155 (190)
Q Consensus        91 ~~~~---~~---~d~vl~m~v~--pG~~gq~~---~~~~-~~ki~~~~~~~~~~~~~~~i~vdGG---I~~~~~~~~~~a  155 (190)
                      +...   ..   .+.+.+....  ||+.-+..   .+.- +.-+.-.|-+++    +..|.+.++   +..+.......+
T Consensus       201 ~~l~~l~~l~~~~~~i~~~~~~p~~gT~l~~~~~~~~~e~l~~iA~~Rl~lp----~~~i~i~~~~~~~~~~~~~~~L~~  276 (312)
T d1r30a_         201 GLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMP----TSYVRLSAGREQMNEQTQAMCFMA  276 (312)
T ss_dssp             HHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCT----TSEEEEESSGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CCCEEEEECHHHCCHHHHHHHHHC
T ss_conf             9999998557788764305416899843244568988999999999998688----762588712403288999999851


Q ss_pred             CCCEEEECCCCCCC--CCHHHHHHHHHH
Q ss_conf             99799986425698--899999999997
Q 029661          156 GANALVAGSAVFGA--KDYAEAIKGIKT  181 (190)
Q Consensus       156 Gad~iVvGsai~~~--~d~~~~~~~l~~  181 (190)
                      |||.+..|..+..+  .++++-.+-+++
T Consensus       277 Gan~~~~~~~~~t~~~~~~~~~~~~i~~  304 (312)
T d1r30a_         277 GANSIFYGCKLLTTPNPEEDKDLQLFRK  304 (312)
T ss_dssp             TCCEEECSSBSSSSBCCCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf             8957886675126899798999999998

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=95.70  E-value=0.05  Score=28.19  Aligned_cols=127  Identities=17%  Similarity=0.238  Sum_probs=83.3

Q ss_pred             HHHHH--HHCCCCEEEEC--CCCCCCCHHHHHHHHHHHH--CCCEEEEECCCCCHHHHHHHH--CCCCEEEEEEEECCCC
Q ss_conf             99999--87499999991--1378852199999999980--994999973899988899743--1136579973306888
Q 029661           39 RVPDF--IKAGADIVSVH--CEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVL--DVVDLVLIMSVNPGFG  110 (190)
Q Consensus        39 ~i~~~--~~~Gad~i~vh--~e~~~~~~~~~~i~~i~~~--g~~~gl~i~~~t~~~~~~~~~--~~~d~vl~m~v~pG~~  110 (190)
                      .+..+  ...|.|.++-.  .+..+.+++.+.|..+|+.  +..+++=+.....+..+..-+  ..+|+|.+=+-+-|++
T Consensus       557 ~IA~~R~~~~G~~liSP~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTG  636 (809)
T d1ofda2         557 YIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTG  636 (809)
T ss_dssp             HHHHHHTSCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCS
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             88811178999887898878888899999999999997179996599995543708999877634798899837887665


Q ss_pred             CCCCC-------HHHHHHHHHHHHHHHHCC--CCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCC
Q ss_conf             75332-------245899999999876329--998089827889-115899998099799986425
Q 029661          111 GQSFI-------ESQVKKISDLRRMCLEKG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAV  166 (190)
Q Consensus       111 gq~~~-------~~~~~ki~~~~~~~~~~~--~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai  166 (190)
                      .-+..       |. ..-+.++++.+..++  ....+.++||++ ...+.++...|||.+-.|++.
T Consensus       637 Aap~~~~~~~GlP~-~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~  701 (809)
T d1ofda2         637 ASPLSSIKHAGSPW-ELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIA  701 (809)
T ss_dssp             SEEHHHHHHBCCCH-HHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHH
T ss_pred             CCCHHHHHCCCCCH-HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf             46677886088548-999999999999769987449998189888999999998288926674899

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=95.68  E-value=0.045  Score=28.47  Aligned_cols=112  Identities=12%  Similarity=0.205  Sum_probs=61.1

Q ss_pred             HHHHHHHCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             99999809949999738999888997431-13657997330688875332245899999999876329998089827889
Q 029661           67 LNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG  145 (190)
Q Consensus        67 i~~i~~~g~~~gl~i~~~t~~~~~~~~~~-~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~  145 (190)
                      ++++++....+.+.-. ....++...... ..+.+.+ + +-|.....+.+.+.+.+..+++...   .+.+|-+||||+
T Consensus       216 v~~l~~~~~~~~~~kg-~~~~~da~~a~~~g~~~~~v-s-nhggr~ld~~~~~~~~l~~i~~~~~---~~~~iiadGGIR  289 (359)
T d1goxa_         216 VAWLQTITSLPILVKG-VITAEDARLAVQHGAAGIIV-S-NHGARQLDYVPATIMALEEVVKAAQ---GRIPVFLDGGVR  289 (359)
T ss_dssp             HHHHHHHCCSCEEEEC-CCSHHHHHHHHHTTCSEEEE-C-CGGGTSSTTCCCHHHHHHHHHHHTT---TSSCEEEESSCC
T ss_pred             HHHHHHHCCCCEEEEC-CCCHHHHHHHHHCCCCCEEC-C-CCCCCCCCCCCCHHHHCHHHHHCCC---CCCCEEECCCCC
T ss_conf             9999861566532200-24468889998706653220-3-2111000000002544556650347---862146505757


Q ss_pred             -CCCHHHHHHCCCCEEEECCCCCCC------CCHHHHHHHHHHHHC
Q ss_conf             -115899998099799986425698------899999999997103
Q 029661          146 -PKNAYKVIEAGANALVAGSAVFGA------KDYAEAIKGIKTSKR  184 (190)
Q Consensus       146 -~~~~~~~~~aGad~iVvGsai~~~------~d~~~~~~~l~~~~~  184 (190)
                       --.+.+++..|||.+-+|+++..+      +...+.++.|++.++
T Consensus       290 ~G~Di~KALaLGAd~vgigrp~L~~la~~g~~gv~~~i~~l~~EL~  335 (359)
T d1goxa_         290 RGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFE  335 (359)
T ss_dssp             SHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             5778999998489989876899999984349999999999999999

>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermus thermophilus [TaxId: 274]

Probab=95.64  E-value=0.053  Score=28.05  Aligned_cols=147  Identities=17%  Similarity=0.165  Sum_probs=86.5

Q ss_pred             CHHHHHHHCCC-CCCCEEEEEEE-CCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf             98889870347-99937888811-29588999998749999999113788521999999999809949999738999888
Q 029661           12 GPLVVDALRPV-TDLPLDVHLMI-VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA   89 (190)
Q Consensus        12 g~~~i~~i~~~-~~~~i~vhlmv-~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~~   89 (190)
                      .++..++|.+. +....-|=+.+ .++....+.+...+.|++-+|..-    ++ +.++.+++ ......++....+. .
T Consensus        38 s~~~a~~i~~~~~~~~~~V~Vf~~~~~~~i~~~~~~~~~d~vQlHg~e----~~-~~~~~l~~-~~~iik~~~~~~~~-~  110 (200)
T d1v5xa_          38 APEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQVAQLHGEE----PP-EWAEAVGR-FYPVIKAFPLEGPA-R  110 (200)
T ss_dssp             CHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSEEEECSCC----CH-HHHHHHTT-TSCEEEEEECSSSC-C
T ss_pred             CHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCC----CH-HHHHHHHH-CCCCCEEECCCCHH-H
T ss_conf             889988999851675043320342006666643112444432333468----98-99998852-12322464147532-5


Q ss_pred             HHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCC
Q ss_conf             99743113657997330688875332245899999999876329998089827889115899998099799986425698
Q 029661           90 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA  169 (190)
Q Consensus        90 ~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~iVvGsai~~~  169 (190)
                      .+.....+|++++-+-.+| +|..+...-...+      ...   ..++-..|||+++|+.++++.++.++=+-|.+=++
T Consensus       111 ~~~~~~~~~~~L~D~~~~g-~g~~~~~~~~~~~------~~~---~~~~~LAGGl~~~Nv~~~~~~~p~gvDvsSGvE~~  180 (200)
T d1v5xa_         111 PEWADYPAQALLLDGKRPG-SGEAYPRAWAKPL------LAT---GRRVILAGGIAPENLEEVLALRPYALDLASGVEEA  180 (200)
T ss_dssp             GGGGGSSCSEEEEECSSTT-SCCCCCGGGGHHH------HHT---TSCEEECSSCCSTTHHHHHHHCCSEEEESGGGEEE
T ss_pred             HHHHHCCHHHEEECCCCCC-CCCCCCHHHHHHH------HHC---CCCEEECCCCCHHHHHHHHHCCCCEEEECCCEECC
T ss_conf             8774111553363134467-5333664777655------541---57447517887789999985699889975850878


Q ss_pred             ---CCHHHH
Q ss_conf             ---899999
Q 029661          170 ---KDYAEA  175 (190)
Q Consensus       170 ---~d~~~~  175 (190)
                         .|+...
T Consensus       181 ~G~KD~~ki  189 (200)
T d1v5xa_         181 PGVKSAEKL  189 (200)
T ss_dssp             TTEECHHHH
T ss_pred             CCCCCHHHH
T ss_conf             995499999

>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.059  Score=27.77  Aligned_cols=128  Identities=18%  Similarity=0.268  Sum_probs=79.5

Q ss_pred             HHHHHHHCCCCEEEE-C-------CCCCCCCHHHHHHHHHHHHCCCEEEEECCCC-------CHHHHHH----HHCCCC-
Q ss_conf             999998749999999-1-------1378852199999999980994999973899-------9888997----431136-
Q 029661           39 RVPDFIKAGADIVSV-H-------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT-------SLSAIEC----VLDVVD-   98 (190)
Q Consensus        39 ~i~~~~~~Gad~i~v-h-------~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t-------~~~~~~~----~~~~~d-   98 (190)
                      -.+++.+.|++++.+ |       .|.  .+.+.+-++.+.++|+.|.+.+.=+-       ..+.+.+    .+..+. 
T Consensus        78 Sa~mLkd~G~~yviIGHSERR~~f~Et--d~~i~~K~~~al~~gl~pIlCVGEtle~r~~~~~~~~~~~Ql~~~l~~~~~  155 (247)
T d1neya_          78 SVDQIKDVGAKYVILGHSERRSYFHED--DKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKD  155 (247)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHTTCCC--HHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHCCCHHHHCCHHHHHHCCCH--HHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             499998636302101244433211621--777888999886258617987524054300100000237788865334443


Q ss_pred             -EEEEEEEEC----CCCCCCCCHHHHHH-HHHHHHHHHHC-----CCCCEEEEECCCCCCCHHHHHHC-CCCEEEECCCC
Q ss_conf             -579973306----88875332245899-99999987632-----99980898278891158999980-99799986425
Q 029661           99 -LVLIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAV  166 (190)
Q Consensus        99 -~vl~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~~-----~~~~~i~vdGGI~~~~~~~~~~a-Gad~iVvGsai  166 (190)
                       .-++.+-+|    |+ |+...+..... ...+|+.+.+.     ..+.+|..+|+++++|+.++... ++|++-+|+|-
T Consensus       156 ~~~iiIAYEPvWAIGt-G~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~iLYGGSV~~~N~~~i~~~~~iDG~LVGgAS  234 (247)
T d1neya_         156 FTNVVVAYEPVWAIGT-GLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGAS  234 (247)
T ss_dssp             CTTEEEEECCGGGTTT-SCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEESSCCTTTGGGGTTCTTCCEEEESGGG
T ss_pred             CCCEEEEECCHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCEEEEEHHH
T ss_conf             2446998565101467-766672666545678888998763231146674898078888899999668898869952375


Q ss_pred             CCC
Q ss_conf             698
Q 029661          167 FGA  169 (190)
Q Consensus       167 ~~~  169 (190)
                      .++
T Consensus       235 L~~  237 (247)
T d1neya_         235 LKP  237 (247)
T ss_dssp             GST
T ss_pred             CCH
T ss_conf             886

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.017  Score=30.84  Aligned_cols=160  Identities=19%  Similarity=0.230  Sum_probs=87.0

Q ss_pred             CCCCEEEEEEEC----CHH-HH--HHHHHHCCCCEEEECCCCCCCC---------HH----HHHHHHHHHH---CCCE-E
Q ss_conf             999378888112----958-89--9999874999999911378852---------19----9999999980---9949-9
Q 029661           23 TDLPLDVHLMIV----EPE-QR--VPDFIKAGADIVSVHCEQSSTI---------HL----HRTLNQIKDL---GAKA-G   78 (190)
Q Consensus        23 ~~~~i~vhlmv~----~p~-~~--i~~~~~~Gad~i~vh~e~~~~~---------~~----~~~i~~i~~~---g~~~-g   78 (190)
                      .+.|+-+-+.-.    +.. .+  .......++|++.+...+-...         ..    ...++.....   ...+ .
T Consensus       145 ~~~pv~vsi~~~~~~~~~~~~~~~~~~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~  224 (367)
T d1d3ga_         145 DGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVL  224 (367)
T ss_dssp             TTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             68638998346545078888887777776531440024500032112221011110125788888765320224577630


Q ss_pred             EEECCCCCHHHHHHHHC-----CCCEEEEEEE---------------ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             99738999888997431-----1365799733---------------068887533224589999999987632999808
Q 029661           79 VVLNPATSLSAIECVLD-----VVDLVLIMSV---------------NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI  138 (190)
Q Consensus        79 l~i~~~t~~~~~~~~~~-----~~d~vl~m~v---------------~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i  138 (190)
                      +-++|+.....+.....     .++-+..-..               .-|.+|....+..+..++++++..   +.+++|
T Consensus       225 vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~---~~~ipI  301 (367)
T d1d3ga_         225 VKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALT---QGRVPI  301 (367)
T ss_dssp             EEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHT---TTCSCE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCCCCE
T ss_conf             12476410001344678887654310211333223445434421124432112111023088999999973---899519


Q ss_pred             EEECCCC-CCCHHHHHHCCCCEEEECCCC-CCCCC-HHHHHHHHHHHHCC
Q ss_conf             9827889-115899998099799986425-69889-99999999971031
Q 029661          139 EVDGGVG-PKNAYKVIEAGANALVAGSAV-FGAKD-YAEAIKGIKTSKRP  185 (190)
Q Consensus       139 ~vdGGI~-~~~~~~~~~aGad~iVvGsai-~~~~d-~~~~~~~l~~~~~~  185 (190)
                      ..-|||. .+++.+++.+|||.+=+||++ ++.++ +.+..+.|.+.++.
T Consensus       302 ig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~Gp~ii~~I~~~L~~~l~~  351 (367)
T d1d3ga_         302 IGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKE  351 (367)
T ss_dssp             EEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             99889799999999998399788741778823907999999999999998

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.41  E-value=0.0089  Score=32.41  Aligned_cols=104  Identities=21%  Similarity=0.209  Sum_probs=64.6

Q ss_pred             EEEECCCCCHHHHHHHHCC-----CCEEEEEEEE-------------CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             9997389998889974311-----3657997330-------------688875332245899999999876329998089
Q 029661           78 GVVLNPATSLSAIECVLDV-----VDLVLIMSVN-------------PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE  139 (190)
Q Consensus        78 gl~i~~~t~~~~~~~~~~~-----~d~vl~m~v~-------------pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~  139 (190)
                      .+=++|+-+.+.+.+.+..     +|-+..-...             -|.+|.+..+..++.++++++...   .+++|.
T Consensus       270 ~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~---~~ipII  346 (409)
T d1tv5a1         270 FVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTN---KQIPII  346 (409)
T ss_dssp             EEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTT---TCSCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCEEE
T ss_conf             99858998702468899998860654101132222555533423467764310178899999999999708---996099


Q ss_pred             EECCCC-CCCHHHHHHCCCCEEEECCCC-CCCCC-HHHHHHHHHHHHC
Q ss_conf             827889-115899998099799986425-69889-9999999997103
Q 029661          140 VDGGVG-PKNAYKVIEAGANALVAGSAV-FGAKD-YAEAIKGIKTSKR  184 (190)
Q Consensus       140 vdGGI~-~~~~~~~~~aGad~iVvGsai-~~~~d-~~~~~~~l~~~~~  184 (190)
                      --|||. .+.+.+.+.+||+.+=+||++ ++.+. +.+..+.|.+.++
T Consensus       347 GvGGI~s~~Da~e~i~AGAs~VQv~T~li~~Gp~~v~~I~~~L~~~l~  394 (409)
T d1tv5a1         347 ASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLY  394 (409)
T ss_dssp             EESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             989979999999999849978763067871192899999999999999

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.29  E-value=0.07  Score=27.37  Aligned_cols=129  Identities=19%  Similarity=0.281  Sum_probs=74.5

Q ss_pred             HHHHHCCCCEEEECCCCC--------------------CCC----HHHHHHHHHHHH-C-CCEEEEECCCCC--------
Q ss_conf             999874999999911378--------------------852----199999999980-9-949999738999--------
Q 029661           41 PDFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-G-AKAGVVLNPATS--------   86 (190)
Q Consensus        41 ~~~~~~Gad~i~vh~e~~--------------------~~~----~~~~~i~~i~~~-g-~~~gl~i~~~t~--------   86 (190)
                      +.+.++|.|+|-+|.-.+                    +.+    =+.++++.+|+. | ..+++-+++...        
T Consensus       170 ~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~~  249 (374)
T d1gwja_         170 QRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDE  249 (374)
T ss_dssp             HHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSC
T ss_pred             HHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCC
T ss_conf             99998099888732220346778887535764454343121100567889998998838753225553100236876532


Q ss_pred             HHHH----HHHHC--CCCEEEEEEEECCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCC-CC
Q ss_conf             8889----97431--1365799733068887533-224589999999987632999808982788911589999809-97
Q 029661           87 LSAI----ECVLD--VVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-AN  158 (190)
Q Consensus        87 ~~~~----~~~~~--~~d~vl~m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aG-ad  158 (190)
                      .+..    ...++  .++++.+.  .|...+..+ .+..+.  +.+++..     +.++.+.|+++++.+.++++.| +|
T Consensus       250 ~~~~~~~~~~~ld~~~i~~~~~~--~~~~~~~~~~~~~~~~--~~i~~~~-----~~pvi~~G~i~~~~ae~~l~~g~aD  320 (374)
T d1gwja_         250 PEAMAFYLAGELDRRGLAYLHFN--EPDWIGGDITYPEGFR--EQMRQRF-----KGGLIYCGNYDAGRAQARLDDNTAD  320 (374)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEE--CSCBTTBCCCCCTTHH--HHHHHHC-----CSEEEEESSCCHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHCCCCCCCCEEEEEC--CCCCCCCCCCHHHHHH--HHHHHHC-----CCCEEEECCCCHHHHHHHHHCCCCC
T ss_conf             47888876413110472277751--5764578865249999--9999873-----8878997895999999999869974


Q ss_pred             EEEECCCCCCCCCHHHHHHH
Q ss_conf             99986425698899999999
Q 029661          159 ALVAGSAVFGAKDYAEAIKG  178 (190)
Q Consensus       159 ~iVvGsai~~~~d~~~~~~~  178 (190)
                      .+.+||++...+|+-..+++
T Consensus       321 lV~~gR~~iadPd~~~K~~~  340 (374)
T d1gwja_         321 AVAFGRPFIANPDLPERFRL  340 (374)
T ss_dssp             EEEESHHHHHCTTHHHHHHH
T ss_pred             EEHHHHHHHHCCCHHHHHHC
T ss_conf             84466999879229999975

>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Leishmania mexicana [TaxId: 5665]

Probab=94.89  E-value=0.092  Score=26.69  Aligned_cols=164  Identities=10%  Similarity=0.122  Sum_probs=93.9

Q ss_pred             HHHHHCCC---CCCCEEEEEEECCH-----HH--HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             89870347---99937888811295-----88--9999987499999991137885219999999998099499997389
Q 029661           15 VVDALRPV---TDLPLDVHLMIVEP-----EQ--RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA   84 (190)
Q Consensus        15 ~i~~i~~~---~~~~i~vhlmv~~p-----~~--~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~   84 (190)
                      .++.+|+.   .+.++.+-+-...|     ..  -++...+.|+|++.+.... +..++.++-+.+++.|..+.+...-+
T Consensus        63 ~i~~iR~~~~~~g~~v~i~~d~~gp~~~t~kd~~di~~a~~~~vD~ialSFVr-s~~Dv~~ir~~l~~~~~~~~iiaKIE  141 (258)
T d1pkla2          63 TINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQFGVEQGVDMIFASFIR-SAEQVGDVRKALGPKGRDIMIICKIE  141 (258)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEECCCCCSSCHHHHHHHHHHHHHTCSEEEETTCC-SHHHHHHHHHHHCGGGTTSEEEEEEC
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             99999999998399814110223211221328999998875499857873789-89999999999997389873599965


Q ss_pred             CC--HHHHHHHHCCCCEEEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-------------CC
Q ss_conf             99--888997431136579973306888-753322458999999998763299980898278891-------------15
Q 029661           85 TS--LSAIECVLDVVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-------------KN  148 (190)
Q Consensus        85 t~--~~~~~~~~~~~d~vl~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-------------~~  148 (190)
                      ++  ++.+.+++...|.|++---+-|.. +-.-.|..-++|-+   .....  +.++.+..-+=.             ..
T Consensus       142 ~~~al~nldeI~~~sDgImIaRGDLg~ei~~e~vp~~Qk~Ii~---~~~~~--~kpvivATq~LeSM~~~~~PTRAEv~D  216 (258)
T d1pkla2         142 NHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILIS---KCNVA--GKPVICATQMLESMTYNPRPTRAEVSD  216 (258)
T ss_dssp             SHHHHHTHHHHHHHSSEEEECHHHHTTTSCHHHHHHHHHHHHH---HHHHH--TCCEEECSSSSGGGGTSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCEEEEECHHHHHHCCHHHHHHHHHHHHH---HHHHC--CCCEEEEECEEHHHCCCCCCCHHHHHH
T ss_conf             7354431066776277456743356653465454667899999---99973--998799711107544699998899999


Q ss_pred             HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             899998099799986425698899999999997103
Q 029661          149 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       149 ~~~~~~aGad~iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      +..++..|+|.+.+..---....|.++++.+.+.+.
T Consensus       217 vanav~dG~D~imLs~ETa~G~~P~~~V~~l~~i~~  252 (258)
T d1pkla2         217 VANAVFNGADCVMLSGETAKGKYPNEVVQYMARICL  252 (258)
T ss_dssp             HHHHHHHTCSEEEESHHHHTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             999999489789976501168799999999999999

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.73  E-value=0.064  Score=27.59  Aligned_cols=113  Identities=19%  Similarity=0.182  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             9999999980994999973899988899743-113657997330688875332245899999999876329998089827
Q 029661           64 HRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG  142 (190)
Q Consensus        64 ~~~i~~i~~~g~~~gl~i~~~t~~~~~~~~~-~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG  142 (190)
                      .+.++.+++.+..+.+.-... ..+...... ...|.+.+ + +.|.......+.+.+-+.++..-.     +.+|-+||
T Consensus       211 ~~~i~~l~~~~~~~i~~kgv~-~~~~~~~a~~~g~~~~~~-s-~~gg~~~~~~~~~~~~l~~i~~~~-----~~~viasG  282 (353)
T d1p4ca_         211 WEALRWLRDLWPHKLLVKGLL-SAEDADRCIAEGADGVIL-S-NHGGRQLDCAISPMEVLAQSVAKT-----GKPVLIDS  282 (353)
T ss_dssp             HHHHHHHHHHCCSEEEEEEEC-CHHHHHHHHHTTCSEEEE-C-CGGGTSCTTCCCGGGTHHHHHHHH-----CSCEEECS
T ss_pred             HHHHHHHHHCCCCCHHHHCCH-HHHHHHHHHHCCCCHHHH-C-CCCCCCCCCCCCCHHCCCCHHCCC-----CCCEEECC
T ss_conf             999999986246522232003-456677777638861320-1-333223356554001053021134-----54336447


Q ss_pred             CCC-CCCHHHHHHCCCCEEEECCCCCCC------CCHHHHHHHHHHHHC
Q ss_conf             889-115899998099799986425698------899999999997103
Q 029661          143 GVG-PKNAYKVIEAGANALVAGSAVFGA------KDYAEAIKGIKTSKR  184 (190)
Q Consensus       143 GI~-~~~~~~~~~aGad~iVvGsai~~~------~d~~~~~~~l~~~~~  184 (190)
                      ||+ .-.+.+++..|||.+=+|+.+..+      +...+.++.|+++++
T Consensus       283 GIR~G~Dv~KALaLGAd~vgigrp~L~~l~~~G~egv~~~l~~l~~El~  331 (353)
T d1p4ca_         283 GFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADID  331 (353)
T ss_dssp             SCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             7676678999998589989876899999985549999999999999999

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.32  E-value=0.13  Score=25.90  Aligned_cols=128  Identities=16%  Similarity=0.263  Sum_probs=73.7

Q ss_pred             CCCEEEEEEECCH-HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHCC-CCEE
Q ss_conf             9937888811295-8899999874999999911378852199999999980994999973899-98889974311-3657
Q 029661           24 DLPLDVHLMIVEP-EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT-SLSAIECVLDV-VDLV  100 (190)
Q Consensus        24 ~~~i~vhlmv~~p-~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t-~~~~~~~~~~~-~d~v  100 (190)
                      +.|+...=|-.=. .+....+.++|.-++ +|... ..++..+.++.+++....++.++..+- ..++++.+++. +|++
T Consensus        37 ~iPIIaa~MdtV~~~~mA~als~~GGlGv-i~r~~-~~e~~~~~i~~vk~~~~~v~~~vgv~~~~~e~~~~li~agvd~i  114 (330)
T d1vrda1          37 NIPLVSAAMDTVTEAALAKALAREGGIGI-IHKNL-TPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVKAGVDVI  114 (330)
T ss_dssp             SSSEEECCCTTTCSHHHHHHHHTTTCEEE-ECSSS-CHHHHHHHHHHHHTCCBCCEEEECSSTTHHHHHHHHHHTTCSEE
T ss_pred             CCCEEECCCCCCCCHHHHHHHHHCCCEEE-EECCC-CHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHCCCCEE
T ss_conf             88889689887489999999997899178-60355-62566779998754164799998148899999999998799889


Q ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEC
Q ss_conf             997330688875332245899999999876329998089827889115899998099799986
Q 029661          101 LIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG  163 (190)
Q Consensus       101 l~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~iVvG  163 (190)
                      .+   +...+   ......+.+++++...    .+..+.+..-.+.+....+.++|||++.+|
T Consensus       115 vI---d~A~G---~~~~~~~~ik~ik~~~----~~~~viaGnV~t~~~a~~l~~~GaD~v~VG  167 (330)
T d1vrda1         115 VI---DTAHG---HSRRVIETLEMIKADY----PDLPVVAGNVATPEGTEALIKAGADAVKVG  167 (330)
T ss_dssp             EE---CCSCC---SSHHHHHHHHHHHHHC----TTSCEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             EE---ECCCC---CCHHHHHHHHHHHHHC----CCCCEEEECHHHHHHHHHHHHCCCCEEEEC
T ss_conf             99---46887---7333779999988758----998789503068999999998389988405

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.87  E-value=0.16  Score=25.38  Aligned_cols=130  Identities=20%  Similarity=0.197  Sum_probs=69.8

Q ss_pred             HHHHHHHCCCCEEEECCCCCCC-------CHHHHHHHHHHHHCCCEEEEECC---C-C-C---HHHH----HHHHCC-CC
Q ss_conf             9999987499999991137885-------21999999999809949999738---9-9-9---8889----974311-36
Q 029661           39 RVPDFIKAGADIVSVHCEQSST-------IHLHRTLNQIKDLGAKAGVVLNP---A-T-S---LSAI----ECVLDV-VD   98 (190)
Q Consensus        39 ~i~~~~~~Gad~i~vh~e~~~~-------~~~~~~i~~i~~~g~~~gl~i~~---~-t-~---~~~~----~~~~~~-~d   98 (190)
                      .++.+...|+|.|-++.-..+.       ..+.++.++++++|+...+.+-+   . . .   .+.+    +...+. +|
T Consensus       111 sv~~a~~~GadaVk~lv~~~~d~~~e~~~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaD  190 (291)
T d1to3a_         111 NAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGAD  190 (291)
T ss_dssp             CHHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCS
T ss_pred             CHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             89999745676689998637753189999999999999997399616898744888654443188899999999864883


Q ss_pred             EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH----HHHHHCCCCEEEECCCCCCC----C
Q ss_conf             579973306888753322458999999998763299980898278891158----99998099799986425698----8
Q 029661           99 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA----YKVIEAGANALVAGSAVFGA----K  170 (190)
Q Consensus        99 ~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~----~~~~~aGad~iVvGsai~~~----~  170 (190)
                      .+-+  -.||... ...   .+.+...+....... -..+...||.+.+.+    +.+.++|+.+|.+||+||+.    +
T Consensus       191 i~K~--~~p~~~~-~~~---~~~~~~~~~~~~~~~-~p~vvLs~G~~~~~f~~~l~~A~~aGa~G~~~GR~iw~~~~~~~  263 (291)
T d1to3a_         191 LYKV--EMPLYGK-GAR---SDLLTASQRLNGHIN-MPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSSVIGLP  263 (291)
T ss_dssp             EEEE--CCGGGGC-SCH---HHHHHHHHHHHHTCC-SCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGGGTTCS
T ss_pred             EEEE--ECCCCCH-HHH---HHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHCCCCCC
T ss_conf             7998--5688720-556---778998888860489-85899908989899999999999779909985746434833575


Q ss_pred             CHHHH
Q ss_conf             99999
Q 029661          171 DYAEA  175 (190)
Q Consensus       171 d~~~~  175 (190)
                      ++++.
T Consensus       264 ~~~~~  268 (291)
T d1to3a_         264 DTELM  268 (291)
T ss_dssp             CHHHH
T ss_pred             CHHHH
T ss_conf             49999

>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.55  E-value=0.15  Score=25.50  Aligned_cols=137  Identities=10%  Similarity=0.087  Sum_probs=82.1

Q ss_pred             HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC--HHHHHHHHCCCCEEEEE----EEECCCCCC
Q ss_conf             999998749999999113788521999999999809949999738999--88899743113657997----330688875
Q 029661           39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS--LSAIECVLDVVDLVLIM----SVNPGFGGQ  112 (190)
Q Consensus        39 ~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~--~~~~~~~~~~~d~vl~m----~v~pG~~gq  112 (190)
                      -++...+.++|++.+...- +..++..+-+.+++.+..+.+....+++  ++.+.+++...|.|++-    +++.+... 
T Consensus        97 di~~a~~~~vD~ialSFVr-s~~Di~~~r~~l~~~~~~~~IiaKIE~~~al~NldeIi~~sDgimIaRGDLgvei~~e~-  174 (265)
T d1a3xa2          97 DLRFGVKNGVHMVFASFIR-TANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEIPAPE-  174 (265)
T ss_dssp             HHHHHHHTTCCEECCTTCC-SHHHHHHHHHHHCGGGTTSCCEEEECSHHHHTTHHHHHHHCSEEEEEHHHHHHHSCHHH-
T ss_pred             HHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCHHHHHHHCCEEEEECCCHHHHCCHHH-
T ss_conf             9998654265167525679-88999999999987357970776315367775758888635515887243023224778-


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-------------CCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH
Q ss_conf             3322458999999998763299980898278891-------------158999980997999864256988999999999
Q 029661          113 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-------------KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI  179 (190)
Q Consensus       113 ~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-------------~~~~~~~~aGad~iVvGsai~~~~d~~~~~~~l  179 (190)
                        .|..-++|-   ....+.  +.++-+..-+=.             ..+..++..|+|.+.+..--.....|.++++.+
T Consensus       175 --vp~~Qk~Ii---~~~~~~--gkpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~vmLs~ETA~G~~Pv~~V~~~  247 (265)
T d1a3xa2         175 --VLAVQKKLI---AKSNLA--GKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPINAVTTM  247 (265)
T ss_dssp             --HHHHHHHHH---HHHHHH--TCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEECCSHHHHSCSCHHHHHHHH
T ss_pred             --HHHHHHHHH---HHHHHC--CCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf             --889889999---999971--9948854653232135999868999999999993897899764021687999999999


Q ss_pred             HHHHC
Q ss_conf             97103
Q 029661          180 KTSKR  184 (190)
Q Consensus       180 ~~~~~  184 (190)
                      .+.+.
T Consensus       248 ~~I~~  252 (265)
T d1a3xa2         248 AETAV  252 (265)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99999

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=93.52  E-value=0.068  Score=27.44  Aligned_cols=158  Identities=19%  Similarity=0.151  Sum_probs=83.7

Q ss_pred             HCCC-CCCCEEEEEEECCHH----HHHH-HHHHCCCCEEEECCCCC---------CCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             0347-999378888112958----8999-99874999999911378---------8521999999999809949999738
Q 029661           19 LRPV-TDLPLDVHLMIVEPE----QRVP-DFIKAGADIVSVHCEQS---------STIHLHRTLNQIKDLGAKAGVVLNP   83 (190)
Q Consensus        19 i~~~-~~~~i~vhlmv~~p~----~~i~-~~~~~Gad~i~vh~e~~---------~~~~~~~~i~~i~~~g~~~gl~i~~   83 (190)
                      +++. ++.++.+.++...+.    .... .....+++.+..|....         .............+.+....+-..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~k~v~  168 (310)
T d1vcfa1          89 VRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVG  168 (310)
T ss_dssp             CTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCSCSSCEEEECSS
T ss_pred             HHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC
T ss_conf             59756774356310134303554788887777518875204445434430256511166799999976416881244534


Q ss_pred             -CCCHHHHHHHHCC-CCEEEEEEEECCCCCCCCC--------------------HHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             -9998889974311-3657997330688875332--------------------24589999999987632999808982
Q 029661           84 -ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFI--------------------ESQVKKISDLRRMCLEKGVNPWIEVD  141 (190)
Q Consensus        84 -~t~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~--------------------~~~~~ki~~~~~~~~~~~~~~~i~vd  141 (190)
                       ....+......+. +|.+.+- -+   +|..+.                    ...+.-+.+++...    .+.+|.+|
T Consensus       169 ~~~~~e~a~~~~~aGvd~i~vs-n~---gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~----~~i~Ii~d  240 (310)
T d1vcfa1         169 HGLSREAALALRDLPLAAVDVA-GA---GGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVL----PHLPLVAS  240 (310)
T ss_dssp             SCCCHHHHHHHTTSCCSEEECC-CB---TSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHC----SSSCEEEE
T ss_pred             CCCCHHHHHHHHHCCCCEEEEC-CC---CCCCHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHC----CCCEEEEC
T ss_conf             7652999999998599889824-65---5554200400002573011223211368999999998635----89817758


Q ss_pred             CCCC-CCCHHHHHHCCCCEEEECCCCCCC--CCH---HHHHHHHHHHHC
Q ss_conf             7889-115899998099799986425698--899---999999997103
Q 029661          142 GGVG-PKNAYKVIEAGANALVAGSAVFGA--KDY---AEAIKGIKTSKR  184 (190)
Q Consensus       142 GGI~-~~~~~~~~~aGad~iVvGsai~~~--~d~---~~~~~~l~~~~~  184 (190)
                      |||+ ...+-+++..|||.+-+||++..+  ..+   ...++.+++.++
T Consensus       241 GGIr~g~Dv~KALalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~El~  289 (310)
T d1vcfa1         241 GGVYTGTDGAKALALGADLLAVARPLLRPALEGAERVAAWIGDYLEELR  289 (310)
T ss_dssp             SSCCSHHHHHHHHHHTCSEEEECGGGHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             9978569999999939997447489999862179999999999999999

>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Pyridoxine 5'-phosphate synthase
family: Pyridoxine 5'-phosphate synthase
domain: Pyridoxine 5'-phosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=92.14  E-value=0.29  Score=23.90  Aligned_cols=144  Identities=17%  Similarity=0.246  Sum_probs=83.7

Q ss_pred             CCCHHHHHHHCCCC--CCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHH-HHHHHHHHH-HCCCEEEEECCCC
Q ss_conf             77988898703479--9937888811295889999987499999991137885219-999999998-0994999973899
Q 029661           10 TIGPLVVDALRPVT--DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHL-HRTLNQIKD-LGAKAGVVLNPAT   85 (190)
Q Consensus        10 ~~g~~~i~~i~~~~--~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~~~~-~~~i~~i~~-~g~~~gl~i~~~t   85 (190)
                      +...+-|.-||...  +.|        ||......+.++|||+||+|+-- ..+++ ..-+..+++ .....-+...|..
T Consensus         6 sVNidhiAtLRnaRg~~~P--------d~~~~a~~~~~~GadgITvH~R~-DrRHI~~~Dv~~l~~~~~~~lNlE~a~~~   76 (242)
T d1m5wa_           6 GVNIDHIATLRNARGTAYP--------DPVQAAFIAEQAGADGITVHLRE-DRRHITDRDVRILRQTLDTRMNLEMAVTE   76 (242)
T ss_dssp             EEECHHHHHHHHTSSCCCS--------CHHHHHHHHHTTTCSEEEEECCT-TCSSSCHHHHHHHHHHCSSEEEEEECSSH
T ss_pred             EEEECEEEEECCCCCCCCC--------CHHHHHHHHHHCCCCEEEECCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf             7631104421005899999--------99999999998499868957788-75655658899998875201254533422


Q ss_pred             CH-HHHHHHHCCCCEEEEEEEECC---C-CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEE
Q ss_conf             98-889974311365799733068---8-875332245899999999876329998089827889115899998099799
Q 029661           86 SL-SAIECVLDVVDLVLIMSVNPG---F-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL  160 (190)
Q Consensus        86 ~~-~~~~~~~~~~d~vl~m~v~pG---~-~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~~~~~~~~aGad~i  160 (190)
                      .+ +...++  .++++.+.--.+.   . +|.-+ ..-.++++.+.+.+.+.+....+=+|.  .++.+..+.+.|||.+
T Consensus        77 e~i~ia~~~--kP~qvtLVPe~r~elTTegGld~-~~~~~~L~~~i~~l~~~girvSLFiDp--d~~~i~~a~~lGad~I  151 (242)
T d1m5wa_          77 EMLAIAVET--KPHFCCLVPEKRQEVTTEGGLDV-AGQRDKMRDACKRLADAGIQVSLFIDA--DEEQIKAAAEVGAPFI  151 (242)
T ss_dssp             HHHHHHHHH--CCSEEEECCCCSSCSSCCSCCCS-GGGHHHHHHHHHHHHHTTCEEEEEECS--CHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHH--CCCEEEEEECCCCCCCCCCCEEE-HHHHHHHHHHHHHHHHCCCEEEEEECC--CHHHHHHHHHCCCCEE
T ss_conf             489999871--63227886257555576775520-215889999999998669707999445--2465778864276635


Q ss_pred             EECCCCC
Q ss_conf             9864256
Q 029661          161 VAGSAVF  167 (190)
Q Consensus       161 VvGsai~  167 (190)
                      -+=+.=|
T Consensus       152 ElhTG~Y  158 (242)
T d1m5wa_         152 EIHTGCY  158 (242)
T ss_dssp             EEECHHH
T ss_pred             EEECCCC
T ss_conf             5320211

>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.12  E-value=0.29  Score=23.89  Aligned_cols=157  Identities=14%  Similarity=0.113  Sum_probs=93.6

Q ss_pred             HHHHHCCCCCCCEEEEEEECCHHHHHH---HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf             898703479993788881129588999---99874999999911378852199999999980994999973899988899
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE   91 (190)
Q Consensus        15 ~i~~i~~~~~~~i~vhlmv~~p~~~i~---~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~~~~   91 (190)
                      .++.++.....++.+.....++...++   .+...+-+.+.=-+-   ..+-.++++.+++.|+++-+....+ ..+.+.
T Consensus        44 ~~~~i~~~~~~~is~ev~~~~~~~m~~~a~~l~~~~~ni~VKIP~---t~~G~~ai~~L~~~Gi~~n~Tavfs-~~Qa~~  119 (218)
T d1vpxa_          44 RVKEICDLVKGPVSAEVVSLDYEGMVREARELAQISEYVVIKIPM---TPDGIKAVKTLSAEGIKTNVTLVFS-PAQAIL  119 (218)
T ss_dssp             HHHHHHHHHCSCEEEECSCCSHHHHHHHHHHHHTTCTTEEEEEES---SHHHHHHHHHHHHTTCCEEEEEECS-HHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECC---CCCCHHHHHHHHHCCCCEEEEEECC-HHHHHH
T ss_conf             999998525774102113472788889999985135541899545---5644589999877097615677267-999999


Q ss_pred             HHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCCC-
Q ss_conf             743113657997330688875332245899999999876329998089827889-115899998099799986425698-
Q 029661           92 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-  169 (190)
Q Consensus        92 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~~-  169 (190)
                      -....+++|..   ..|- -........+.+++++++....+.+.+|.+ .+++ .+++.++..+|+|.+.+.-.+++. 
T Consensus       120 Aa~aga~yisp---y~gR-~~d~g~d~~~~i~~~~~~~~~~~~~tkil~-AS~r~~~~v~~a~~~G~d~iTip~~v~~~l  194 (218)
T d1vpxa_         120 AAKAGATYVSP---FVGR-MDDLSNDGMRMLGEIVEIYNNYGFETEIIA-ASIRHPMHVVEAALMGVDIVTMPFAVLEKL  194 (218)
T ss_dssp             HHHHTCSEEEE---BHHH-HHHTTSCHHHHHHHHHHHHHHHTCSCEEEE-BSCCSHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred             HHHCCCCEEEE---EECC-HHHHCCCCHHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHHHHCCCCEEECCHHHHHHH
T ss_conf             87548977976---2031-332112320568999999860056632666-032789999999986999999699999999


Q ss_pred             -CCH--HHHHHHHH
Q ss_conf             -899--99999999
Q 029661          170 -KDY--AEAIKGIK  180 (190)
Q Consensus       170 -~d~--~~~~~~l~  180 (190)
                       .+|  .++++.+.
T Consensus       195 ~~~~~t~~~v~~F~  208 (218)
T d1vpxa_         195 FKHPMTDLGIERFM  208 (218)
T ss_dssp             TCCHHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHH
T ss_conf             77986099999999

>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Nicotinate phosphoribosyltransferase Ta1145
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=92.06  E-value=0.19  Score=24.91  Aligned_cols=52  Identities=31%  Similarity=0.379  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             899999999876329-9980898278891158999980997999864256988
Q 029661          119 VKKISDLRRMCLEKG-VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       119 ~~ki~~~~~~~~~~~-~~~~i~vdGGI~~~~~~~~~~aGad~iVvGsai~~~~  170 (190)
                      ...+++++.++.+.+ .+..|.+.+|++++++.++.++++|.+=+|+.+...+
T Consensus       128 ~~l~~~~r~~Ld~~G~~~vkIi~S~glde~~I~~l~~~~~d~fGvGt~Lvt~~  180 (270)
T d1ytda1         128 EALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSAK  180 (270)
T ss_dssp             HHHHHHHHHHHHHTTCTTSEEEEESSCCHHHHHHHHHHTCCEEEECHHHHTCC
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             99999999853824788625897799899999999963886696545204588

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=91.98  E-value=0.3  Score=23.79  Aligned_cols=145  Identities=17%  Similarity=0.214  Sum_probs=92.8

Q ss_pred             HHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCC----CCHHHHHHHHHHHHCCCEEEEE----------
Q ss_conf             98703479993788881129588999998749999999113788----5219999999998099499997----------
Q 029661           16 VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS----TIHLHRTLNQIKDLGAKAGVVL----------   81 (190)
Q Consensus        16 i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~----~~~~~~~i~~i~~~g~~~gl~i----------   81 (190)
                      ++...+.++.|+-+||==..-.+.+..+.++|.+.|-+=....+    ...-.++++.++.+|.-+=..+          
T Consensus        64 ~~~~a~~~~vpv~lHlDH~~~~e~i~~ai~~GftSVMiDgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~Ed~~  143 (305)
T d1rvga_          64 AVELAKEARVPVAVHLDHGSSYESVLRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHV  143 (305)
T ss_dssp             HHHHHHHCSSCEEEEEEEECSHHHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC--
T ss_pred             HHHHHHCCCCCEEEEEHHCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCHHCEEEEEEEEEEECCCCCC
T ss_conf             99987516995898602104746667887558866887686324799999999999972211005886322550456665


Q ss_pred             --C----CCCCHHHHHHHHC--CCCEEEEEEEECCCC-C----CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC------
Q ss_conf             --3----8999888997431--136579973306888-7----5332245899999999876329998089827------
Q 029661           82 --N----PATSLSAIECVLD--VVDLVLIMSVNPGFG-G----QSFIESQVKKISDLRRMCLEKGVNPWIEVDG------  142 (190)
Q Consensus        82 --~----~~t~~~~~~~~~~--~~d~vl~m~v~pG~~-g----q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG------  142 (190)
                        .    .-|.++...++..  .+|.+-   +-.|.. |    .+.....+++++++++..     +.++..-|      
T Consensus       144 ~~~~~~~~~T~peea~~Fv~~TgvD~LA---vaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~-----~~PLVlHGgS~vp~  215 (305)
T d1rvga_         144 AVDEKDALLTNPEEARIFMERTGADYLA---VAIGTSHGAYKGKGRPFIDHARLERIARLV-----PAPLVLHGASAVPP  215 (305)
T ss_dssp             ----CCTTCCCHHHHHHHHHHHCCSEEE---ECSSCCSSSBCSSSSCCCCHHHHHHHHHHC-----CSCEEECSCCCCCH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCHHH---HHHHHHHCCCCCCCCCCCHHHHHHHHHHCC-----CCCEECCCCCCCCH
T ss_conf             5565322247878999999985855735---656566503578776531287999997226-----88852357766657


Q ss_pred             -----------------CCCCCCHHHHHHCCCCEEEECCCCCC
Q ss_conf             -----------------88911589999809979998642569
Q 029661          143 -----------------GVGPKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       143 -----------------GI~~~~~~~~~~aGad~iVvGsai~~  168 (190)
                                       |+..+.++++++.|+.-+-++|.+..
T Consensus       216 ~~~~~~~~~g~~lhg~sG~~~e~i~~ai~~GV~KiNi~T~l~~  258 (305)
T d1rvga_         216 ELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDLRL  258 (305)
T ss_dssp             HHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTEEEEEECHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECHHHHH
T ss_conf             8875521247655777899999999998759679984808999

>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.50  E-value=0.34  Score=23.48  Aligned_cols=137  Identities=10%  Similarity=0.105  Sum_probs=84.5

Q ss_pred             HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCC--CCHHHHHHHHCCCCEEEEE----EEECCCCCC
Q ss_conf             9999987499999991137885219999999998099499997389--9988899743113657997----330688875
Q 029661           39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDVVDLVLIM----SVNPGFGGQ  112 (190)
Q Consensus        39 ~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~--t~~~~~~~~~~~~d~vl~m----~v~pG~~gq  112 (190)
                      -++...+.|+|++.+...- +..++..+-+.++++|..+.+.-.-+  ..++.+.+++...|.|++-    +++.+... 
T Consensus       114 di~~a~~~~vD~ialSFVr-s~~DI~~~r~~l~~~g~~~~IiaKIE~~~al~NldeIi~~sDgIMIaRGDLg~ei~~e~-  191 (282)
T d2g50a2         114 DLKFGVEQDVDMVFASFIR-KAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEK-  191 (282)
T ss_dssp             HHHHHHHTTCSEEEETTCC-SHHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCGGG-
T ss_pred             HHHHHHHCCCCCEEECCCC-CHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCCHHHCCCCCEEEEECCCCCCCCCHHH-
T ss_conf             9987663356642534669-88999999999997399853787532145553412231236604665230000267877-


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-------------CCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH
Q ss_conf             3322458999999998763299980898278891-------------158999980997999864256988999999999
Q 029661          113 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-------------KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI  179 (190)
Q Consensus       113 ~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-------------~~~~~~~~aGad~iVvGsai~~~~d~~~~~~~l  179 (190)
                        .|..-++|-+.   ....  +.++.+...+=.             ..+.-++..|+|++.+..--.....|.++++.+
T Consensus       192 --vp~~Qk~Ii~~---~~~~--~kpvivAt~~leSMi~~~~pTRaEv~Dianav~~G~D~imLs~ETa~G~~p~~~V~~l  264 (282)
T d2g50a2         192 --VFLAQKMIIGR---CNRA--GKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQ  264 (282)
T ss_dssp             --HHHHHHHHHHH---HHHH--TCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHH
T ss_pred             --HHHHHHHHHHH---HHHC--CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf             --67899999999---9855--9937985465465556999978999999999994898899886102687999999999


Q ss_pred             HHHHC
Q ss_conf             97103
Q 029661          180 KTSKR  184 (190)
Q Consensus       180 ~~~~~  184 (190)
                      .+.++
T Consensus       265 ~~i~~  269 (282)
T d2g50a2         265 HLIAR  269 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99999

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=90.98  E-value=0.38  Score=23.18  Aligned_cols=128  Identities=23%  Similarity=0.354  Sum_probs=71.2

Q ss_pred             HHHHCCCCEEEECCCCC--------------------CC----CHHHHHHHHHHHH-C-CCEEEEECCCCC---------
Q ss_conf             99874999999911378--------------------85----2199999999980-9-949999738999---------
Q 029661           42 DFIKAGADIVSVHCEQS--------------------ST----IHLHRTLNQIKDL-G-AKAGVVLNPATS---------   86 (190)
Q Consensus        42 ~~~~~Gad~i~vh~e~~--------------------~~----~~~~~~i~~i~~~-g-~~~gl~i~~~t~---------   86 (190)
                      .+.++|.|+|-+|.-.+                    +.    .=+.++++.+|+. | -.+++...+.+.         
T Consensus       167 ~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~~~~~~~  246 (380)
T d1q45a_         167 NAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDSDP  246 (380)
T ss_dssp             HHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCH
T ss_pred             HHHHHCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCC
T ss_conf             99982865366000211367654165335576655764231036677779988887015672278752022366421331


Q ss_pred             HHH---HHHHH------C--CCCEEEEEEEECCCC--------CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             888---99743------1--136579973306888--------7533224589999999987632999808982788911
Q 029661           87 LSA---IECVL------D--VVDLVLIMSVNPGFG--------GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK  147 (190)
Q Consensus        87 ~~~---~~~~~------~--~~d~vl~m~v~pG~~--------gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~~  147 (190)
                      .+.   +...+      .  .++++.+.  .+.+.        .+..........+.+|..     .+.++.+.||++++
T Consensus       247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-----~~~pv~~~Gg~~~~  319 (380)
T d1q45a_         247 LSLGLAVVGMLNKLQGVNGSKLAYLHVT--QPRYHAYGQTESGRQGSDEEEAKLMKSLRMA-----YNGTFMSSGGFNKE  319 (380)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSCCSEEEEE--CCC---------------CHHHHHHHHHHHH-----SCSCEEEESSCCHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-----CCCCEEECCCCCHH
T ss_conf             2333321025667665313563247741--6754433334566567625667889988652-----48858967998999


Q ss_pred             CHHHHHHCC-CCEEEECCCCCCCCCHHHHH
Q ss_conf             589999809-97999864256988999999
Q 029661          148 NAYKVIEAG-ANALVAGSAVFGAKDYAEAI  176 (190)
Q Consensus       148 ~~~~~~~aG-ad~iVvGsai~~~~d~~~~~  176 (190)
                      ...++++.| +|.+-+||+++..+|+-..+
T Consensus       320 ~ae~~l~~G~~DlV~~gR~liaDPdlv~K~  349 (380)
T d1q45a_         320 LGMQAVQQGDADLVSYGRLFIANPDLVSRF  349 (380)
T ss_dssp             HHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHCCCHHHHH
T ss_conf             999999869963245529988792499999

>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=0.4  Score=23.07  Aligned_cols=152  Identities=12%  Similarity=0.060  Sum_probs=87.2

Q ss_pred             CCCEEEEEEECCH----HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHC-CCEEEE--ECCCCCHHHHHHHHCC
Q ss_conf             9937888811295----88999998749999999113788521999999999809-949999--7389998889974311
Q 029661           24 DLPLDVHLMIVEP----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVV--LNPATSLSAIECVLDV   96 (190)
Q Consensus        24 ~~~i~vhlmv~~p----~~~i~~~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g-~~~gl~--i~~~t~~~~~~~~~~~   96 (190)
                      ...+.+++.--..    ...++...+.|+|++.+...- +..++.++-+.+++.| ..+.+.  +.....++.+.+++..
T Consensus        60 ~~~I~~Dl~gp~ltekD~~~i~~a~~~~vD~ialSFVr-~~~Dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nldeIi~~  138 (246)
T d1e0ta2          60 TAAILLDTKGPALAEKDKQDLIFGCEQGVDFVAASFIR-KRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEA  138 (246)
T ss_dssp             CCEEEEECCCCSSCHHHHHHHHHHHHHTCSEEEESSCC-SHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCHHHHHHH
T ss_conf             97653344544466673145668987399999984878-77879999999997277773278885246555350777764


Q ss_pred             CCEEEEE----EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-------------CCHHHHHHCCCCE
Q ss_conf             3657997----3306888753322458999999998763299980898278891-------------1589999809979
Q 029661           97 VDLVLIM----SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-------------KNAYKVIEAGANA  159 (190)
Q Consensus        97 ~d~vl~m----~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-------------~~~~~~~~aGad~  159 (190)
                      .|.|++-    +++.+..   -.|..-++|-+.....     +.++.+...+=.             ..+..++..|+|.
T Consensus       139 sDgImIaRGDLg~ei~~e---~vp~~Qk~ii~~~~~~-----~kpvi~ATq~LeSM~~~p~PTRAEv~Dv~nav~dG~D~  210 (246)
T d1e0ta2         139 SDGIMVARGDLGVEIPVE---EVIFAQKMMIEKCIRA-----RKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDA  210 (246)
T ss_dssp             SSEEEEEHHHHHHHSCHH---HHHHHHHHHHHHHHHH-----TCEEEEECC---------CCCHHHHHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCHHHHCCHH---HHHHHHHHHHHHHHHH-----CCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf             666899733011107999---9888799999999985-----79879814434556508998568899999999948968


Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9986425698899999999997103
Q 029661          160 LVAGSAVFGAKDYAEAIKGIKTSKR  184 (190)
Q Consensus       160 iVvGsai~~~~d~~~~~~~l~~~~~  184 (190)
                      +.+..--.....|.++++.+.+.+.
T Consensus       211 vmLs~ETa~G~~P~~~v~~l~~i~~  235 (246)
T d1e0ta2         211 VMLSGESAKGKYPLEAVSIMATICE  235 (246)
T ss_dssp             EEECCC------CHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             9975601268799999999999999

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=88.05  E-value=0.65  Score=21.88  Aligned_cols=146  Identities=14%  Similarity=0.183  Sum_probs=93.5

Q ss_pred             HHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCC-C---HHHHHHHHHHHHCCCEEEEEC--------
Q ss_conf             8987034799937888811295889999987499999991137885-2---199999999980994999973--------
Q 029661           15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-I---HLHRTLNQIKDLGAKAGVVLN--------   82 (190)
Q Consensus        15 ~i~~i~~~~~~~i~vhlmv~~p~~~i~~~~~~Gad~i~vh~e~~~~-~---~~~~~i~~i~~~g~~~gl~i~--------   82 (190)
                      .++.+.+..+.|+-+||==....+.+..+.++|.+.|-+=....+. +   .-.++++.++.+|.-+=..+.        
T Consensus        64 ~~~~~a~~~~vpV~lHlDH~~~~e~i~~ai~~GftSVMiD~S~lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~ed~  143 (284)
T d1gvfa_          64 LCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDD  143 (284)
T ss_dssp             HHHHHHHHTTSCBEEEEEEECCHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----
T ss_pred             HHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf             99999986597588630245444788888735987599879989999999999999999876434134445564266666


Q ss_pred             --------CCCCHHHHHHHHCC--CCEEEEEEEECCCC-CC-C-CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC--CC
Q ss_conf             --------89998889974311--36579973306888-75-3-32245899999999876329998089827889--11
Q 029661           83 --------PATSLSAIECVLDV--VDLVLIMSVNPGFG-GQ-S-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PK  147 (190)
Q Consensus        83 --------~~t~~~~~~~~~~~--~d~vl~m~v~pG~~-gq-~-~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~~  147 (190)
                              .-|.++...++...  +|.+-   +-.|+. |. + ...-.+++++++++..     +.++..=||-.  .+
T Consensus       144 ~~~~~~~~~~T~peea~~Fv~~TgvD~LA---vaiGt~HG~y~~~p~l~~~~L~~i~~~~-----~vPLVlHGgSG~~~e  215 (284)
T d1gvfa_         144 MSVDAESAFLTDPQEAKRFVELTGVDSLA---VAIGTAHGLYSKTPKIDFQRLAEIREVV-----DVPLVLHGASDVPDE  215 (284)
T ss_dssp             ------CCSSCCHHHHHHHHHHHCCSEEE---ECSSCCSSCCSSCCCCCHHHHHHHHHHC-----CSCEEECCCTTCCHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCEEE---EECCCEEECCCCCCCCCCCHHHHHHCCC-----CCCEEEECCCCCCHH
T ss_conf             56554333569879999999985998786---4137422123789865500445663045-----687575689999779


Q ss_pred             CHHHHHHCCCCEEEECCCCCC
Q ss_conf             589999809979998642569
Q 029661          148 NAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus       148 ~~~~~~~aGad~iVvGsai~~  168 (190)
                      .++++++.|+.-+=+||.+-.
T Consensus       216 ~i~~ai~~Gi~KiNi~T~l~~  236 (284)
T d1gvfa_         216 FVRRTIELGVTKVNVATELKI  236 (284)
T ss_dssp             HHHHHHHTTEEEEEECHHHHH
T ss_pred             HHHHHHHCCEEEEEECHHHHH
T ss_conf             999998749589995419999

>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Nicotinate-nucleotide pyrophosphorylase PF1904
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.61  E-value=0.7  Score=21.73  Aligned_cols=49  Identities=24%  Similarity=0.300  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             9999999876329-9980898278891158999980997999864256988
Q 029661          121 KISDLRRMCLEKG-VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK  170 (190)
Q Consensus       121 ki~~~~~~~~~~~-~~~~i~vdGGI~~~~~~~~~~aGad~iVvGsai~~~~  170 (190)
                      ..++++..+.+.+ .+..|.+.|||+++++.++.+ .+|.|=+|+.+..++
T Consensus       137 l~~~~r~~ld~~G~~~v~IiaSgglde~~I~~l~~-~iD~fGvGt~l~t~~  186 (279)
T d2i14a1         137 IIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVD-VVDAFGVGGAIASAK  186 (279)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEEESSCCHHHHHTTGG-GCSEEEECHHHHTCC
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH-CCCEECCCCCCCCCC
T ss_conf             99999997531488841899969989999999873-035722566314689

>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Thermus thermophilus [TaxId: 274]

Probab=86.86  E-value=0.77  Score=21.48  Aligned_cols=144  Identities=15%  Similarity=0.106  Sum_probs=84.9

Q ss_pred             HHHHCCCCCCCEEEEEEECCHHHHHHH---HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf             987034799937888811295889999---98749999999113788521999999999809949999738999888997
Q 029661           16 VDALRPVTDLPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC   92 (190)
Q Consensus        16 i~~i~~~~~~~i~vhlmv~~p~~~i~~---~~~~Gad~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~~~~~   92 (190)
                      ++.+....+.++.+.....+.+..++.   +...+-+.+.=-+-   ..+-.++++.+++.|.++-+...-+ +-+.+.-
T Consensus        52 ~~~~~~~~~~~is~ev~~~~~e~m~~~a~~l~~~~~ni~iKIP~---t~~G~~a~~~L~~~Gi~vn~T~vfs-~~Qa~~A  127 (211)
T d1wx0a1          52 LRAICETVGGPVSAEVTALEAEAMVAEGRRLAAIHPNIVVKLPT---TEEGLKACKRLSAEGIKVNMTLIFS-ANQALLA  127 (211)
T ss_dssp             HHHHHHHHTSCEEEECCCSSHHHHHHHHHHHHHHCTTEEEEEES---SHHHHHHHHHHHHTTCCEEEEEECS-HHHHHHH
T ss_pred             HHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECC---CHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHH
T ss_conf             99998532587689996584899999999986327755999446---4313399999863398615888468-9999999


Q ss_pred             HHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCCC
Q ss_conf             43113657997330688875332245899999999876329998089827889-11589999809979998642569
Q 029661           93 VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  168 (190)
Q Consensus        93 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~~  168 (190)
                      ....++++..   ..|-- +.......+.+++++++...++.+.+|-+ .+++ .+++.++..+|+|.+.+.-.+++
T Consensus       128 a~aga~yisp---yvgR~-~d~g~d~~~~~~~~~~~~~~~~~~tkil~-AS~R~~~~~~~~~~~G~d~vTi~~~v~~  199 (211)
T d1wx0a1         128 ARAGASYVSP---FLGRV-DDISWDGGELLREIVEMIQVQDLPVKVIA-ASIRHPRHVTEAALLGADIATMPHAVFK  199 (211)
T ss_dssp             HHTTCSEEEE---BHHHH-HHTTSCHHHHHHHHHHHHHHTTCSCEEEE-BCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             HHCCCCEEEE---EEECC-HHCCCCCHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf             9839979987---30020-00033322677999999974156621675-2028899999999859999994999999

>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Escherichia coli [TaxId: 562]

Probab=86.49  E-value=0.81  Score=21.37  Aligned_cols=156  Identities=15%  Similarity=0.089  Sum_probs=90.2

Q ss_pred             HHHHHCCCC--CCCEEEEEEECCHHHHHH---HHHHCCCC-EEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf             898703479--993788881129588999---99874999-999911378852199999999980994999973899988
Q 029661           15 VVDALRPVT--DLPLDVHLMIVEPEQRVP---DFIKAGAD-IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS   88 (190)
Q Consensus        15 ~i~~i~~~~--~~~i~vhlmv~~p~~~i~---~~~~~Gad-~i~vh~e~~~~~~~~~~i~~i~~~g~~~gl~i~~~t~~~   88 (190)
                      .++.+++..  +.++.+-....+.+.-++   .+.+.+-+ .|=++..    .+-.+.++.+++.|+++-+...-+ +.+
T Consensus        42 ~~~~i~~~~~~~~~is~ev~~~~~~~mi~~A~~l~~~~~nv~IKIP~t----~~g~~ai~~L~~~Gi~vn~Tavfs-~~Q  116 (220)
T d1l6wa_          42 VLPQLHEAMGGQGRLFAQVMATTAEGMVNDALKLRSIIADIVVKVPVT----AEGLAAIKMLKAEGIPTLGTAVYG-AAQ  116 (220)
T ss_dssp             HHHHHHHHTTTCSEEEEECCCSSHHHHHHHHHHHHHHSTTCEEEEECS----HHHHHHHHHHHHHTCCEEEEEECS-HHH
T ss_pred             HHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECC----CCCCCHHHHHHHCCCCHHHHHCCC-HHH
T ss_conf             999999872867717767753134345899999997232457884010----025412221022040014453144-788


Q ss_pred             HHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHCCCCEEEECCCCC
Q ss_conf             899743113657997330688875332245899999999876329998089827889-1158999980997999864256
Q 029661           89 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF  167 (190)
Q Consensus        89 ~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~~~~~~~~~aGad~iVvGsai~  167 (190)
                      .+.-....++++..   ..|- -........+.++++++++...+.+.+|-+ ++++ .+++.++..+|+|.+.++-.++
T Consensus       117 a~~Aa~aga~yvsp---y~gR-~~d~g~dg~~~i~~~~~~~~~~~~~tkIl~-AS~R~~~~v~~~~~~G~d~iTip~~v~  191 (220)
T d1l6wa_         117 GLLSALAGAEYVAP---YVNR-IDAQGGSGIQTVTDLHQLLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPLDVA  191 (220)
T ss_dssp             HHHHHHHTCSEEEE---BHHH-HHHTTSCHHHHHHHHHHHHHHHCTTCEEEE-BCCSSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             HHHHHHCCCCEEEE---EEEE-HHHCCCCCHHHHHHHHHHHHHCCCCCEEEE-HHCCCHHHHHHHHHCCCCEEECCHHHH
T ss_conf             88764147717863---2330-232246776889999999974188726964-212889999999986999998399999


Q ss_pred             CC--CCH--HHHHHHHH
Q ss_conf             98--899--99999999
Q 029661          168 GA--KDY--AEAIKGIK  180 (190)
Q Consensus       168 ~~--~d~--~~~~~~l~  180 (190)
                      +.  .+|  .+.++.+.
T Consensus       192 ~~l~~~~~t~~~~~~F~  208 (220)
T d1l6wa_         192 QQMISYPAVDAAVAKFE  208 (220)
T ss_dssp             HHTTCCHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHH
T ss_conf             99966933799999999

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Glutamate mutase, small subunit
species: Clostridium cochlearium [TaxId: 1494]

Probab=84.27  E-value=1  Score=20.75  Aligned_cols=104  Identities=16%  Similarity=0.168  Sum_probs=58.9

Q ss_pred             HHHHHHHHCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEEC
Q ss_conf             999999809949999738999888997431--13657997330688875332245899999999876329-998089827
Q 029661           66 TLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG-VNPWIEVDG  142 (190)
Q Consensus        66 ~i~~i~~~g~~~gl~i~~~t~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~-~~~~i~vdG  142 (190)
                      +...++..|.++. .+.+++|.+.+.+.+.  .+|.|.+ |..-+..        ...++++.+.+.+.+ .+.++.+.|
T Consensus        23 va~~l~~~G~~V~-~LG~~~p~e~iv~a~~~~~~d~v~l-S~~~~~~--------~~~~~~~~~~l~~~~~~~i~iivGG   92 (137)
T d1ccwa_          23 LDHAFTNAGFNVV-NIGVLSPQELFIKAAIETKADAILV-SSLYGQG--------EIDCKGLRQKCDEAGLEGILLYVGG   92 (137)
T ss_dssp             HHHHHHHTTCEEE-EEEEEECHHHHHHHHHHHTCSEEEE-EECSSTH--------HHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred             HHHHHHHCCCEEE-ECCCCCCHHHHHHHHHHCCCCEEEE-EECCCCC--------HHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9999997897677-2234569999999998439877887-5114411--------4779999999987314898799947


Q ss_pred             CCC------CCCHHHHHHCCCCEEEECCCCC-CCCCHHHHHHHHHHHHCC
Q ss_conf             889------1158999980997999864256-988999999999971031
Q 029661          143 GVG------PKNAYKVIEAGANALVAGSAVF-GAKDYAEAIKGIKTSKRP  185 (190)
Q Consensus       143 GI~------~~~~~~~~~aGad~iVvGsai~-~~~d~~~~~~~l~~~~~~  185 (190)
                      ++.      ++-..++.+.|+|.+      | ...++.+.+..+++.++.
T Consensus        93 ~~~~~~~~~~~~~~~l~~~Gv~~i------f~~~t~~~~~~~~l~~~l~~  136 (137)
T d1ccwa_          93 NIVVGKQHWPDVEKRFKDMGYDRV------YAPGTPPEVGIADLKKDLNI  136 (137)
T ss_dssp             SCSSSSCCHHHHHHHHHHTTCSEE------CCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCHHHHHHHHHCCCCEE------ECCCCCHHHHHHHHHHHHCC
T ss_conf             867776461878999997697889------89999999999999998576

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

Probab=83.42  E-value=1.1  Score=20.54  Aligned_cols=138  Identities=16%  Similarity=0.225  Sum_probs=71.7

Q ss_pred             EEEEC-CHHHHH-------HHHHHCCCCEEEECCCCC--------------------CCC----HHHHHHHHHHHH-C-C
Q ss_conf             88112-958899-------999874999999911378--------------------852----199999999980-9-9
Q 029661           30 HLMIV-EPEQRV-------PDFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-G-A   75 (190)
Q Consensus        30 hlmv~-~p~~~i-------~~~~~~Gad~i~vh~e~~--------------------~~~----~~~~~i~~i~~~-g-~   75 (190)
                      |-|+. +....+       ..+.++|.|+|-+|.-.+                    +.+    =+.++++.+|+. | -
T Consensus       159 ~~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~  238 (399)
T d1oyaa_         159 HSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHE  238 (399)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECC
T ss_conf             20156778888889999999999809756761243777899864130356652247656654577999987543402225


Q ss_pred             CEEEEECCCCCHH------------HHHHHHC----------CCCEEEEEEEECCCC-------CCCCCHHHHHHHHHHH
Q ss_conf             4999973899988------------8997431----------136579973306888-------7533224589999999
Q 029661           76 KAGVVLNPATSLS------------AIECVLD----------VVDLVLIMSVNPGFG-------GQSFIESQVKKISDLR  126 (190)
Q Consensus        76 ~~gl~i~~~t~~~------------~~~~~~~----------~~d~vl~m~v~pG~~-------gq~~~~~~~~ki~~~~  126 (190)
                      .+++=+++....+            ...+.+.          ..+++..+  .+...       ...+.....+.++   
T Consensus       239 ~IgvRls~~d~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ik---  313 (399)
T d1oyaa_         239 KVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLV--EPRVTNPFLTEGEGEYEGGSNDFVY---  313 (399)
T ss_dssp             GEEEEECTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEE--CTTCSCTTSCTTSSCCCSCCTTHHH---
T ss_pred             CCEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE--CCCCCCCCCCCCCCCCCHHHHHHHH---
T ss_conf             74478530220256677410005778999998898743245434411221--4667775545443211126899999---


Q ss_pred             HHHHHCCCCCEEEEECCCC-CCC-HHHHHHCCCCEEEECCCCCCCCCHHHHHH
Q ss_conf             9876329998089827889-115-89999809979998642569889999999
Q 029661          127 RMCLEKGVNPWIEVDGGVG-PKN-AYKVIEAGANALVAGSAVFGAKDYAEAIK  177 (190)
Q Consensus       127 ~~~~~~~~~~~i~vdGGI~-~~~-~~~~~~aGad~iVvGsai~~~~d~~~~~~  177 (190)
                      +..     +.++.+-||++ .+. ...+.+-++|.+-+||+++..+|+-..++
T Consensus       314 ~~~-----~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~  361 (399)
T d1oyaa_         314 SIW-----KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLE  361 (399)
T ss_dssp             HHC-----CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHH
T ss_pred             HHH-----CCCEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHH
T ss_conf             982-----998899789898699999997599818488799997912999997

>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.79  E-value=1.2  Score=20.40  Aligned_cols=101  Identities=13%  Similarity=0.035  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHCCCEEEEECCCCC---HHHHHHHHC-CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCE
Q ss_conf             999999999809949999738999---888997431-13657997330688875332245899999999876329-9980
Q 029661           63 LHRTLNQIKDLGAKAGVVLNPATS---LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG-VNPW  137 (190)
Q Consensus        63 ~~~~i~~i~~~g~~~gl~i~~~t~---~~~~~~~~~-~~d~vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~-~~~~  137 (190)
                      ...+-.+++.+.....+.-..+|-   ++...+... ..+...+.++.|.-|.      ...-+++++..+.+.+ .+..
T Consensus        75 ~~A~~~~~~~~~~~~~lid~~Dt~~~~~~~a~~~~~~l~~~~~~~gvR~DSGd------~~~~~~~vr~~ld~~g~~~v~  148 (345)
T d2f7fa1          75 YEAFMAYAKTHRDCVFLVDTYDTLKAGVPSAIRVAREMGDKINFLGVRIDSGD------MAYISKRVREQLDEAGFTEAK  148 (345)
T ss_dssp             HHHHHHHHHHCSEEEEECCSSCTTTTHHHHHHHHHHHHGGGSEEEEEEECSSC------HHHHHHHHHHHHHHTTCTTCE
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC------HHHHHHHHHHHHCCCCCCCEE
T ss_conf             99999999877997048998513677789999999997552366687778886------599999999984415689618


Q ss_pred             EEEECCCCCCCHHHHHHCC--CCEEEECCCCCCC
Q ss_conf             8982788911589999809--9799986425698
Q 029661          138 IEVDGGVGPKNAYKVIEAG--ANALVAGSAVFGA  169 (190)
Q Consensus       138 i~vdGGI~~~~~~~~~~aG--ad~iVvGsai~~~  169 (190)
                      |.+.+|++++.+.++.+.|  +|.|=+|+.+...
T Consensus       149 Ii~Sdglde~~I~~l~~~~~~id~FGvGt~L~~~  182 (345)
T d2f7fa1         149 IYASNDLDENTILNLKMQKSKIDVWGVGTKLITA  182 (345)
T ss_dssp             EEECSSCCHHHHHHHHHTTCCCCEEEECHHHHTT
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEEECCCCEEEC
T ss_conf             9981898999999999759943586157621224