Citrus Sinensis ID: 029792

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MRLNLSSIISLIILALPWLQFCETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKKPVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQDTYAKG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHcccccccccccccccccHHHHEEEEEcccccccEEEEEEEEccccccHHHHHHHHcccEEEEEEEccEEEEEEEcccccEEEEEEcccccccccccccEEEcEEEEccEEEcccccccEEEEEEEEcccccEEEEEccccEEEEEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHcccccccccccccHHcEEEEEEEccccccEEEEEEEcccccccHHHHHHHcccccEEEEEccccEEEEEcccccccEEEEEcccccccccccccEEcccEEccccccccEEEccEEEEEEEccccccEEEEEEcccEEEEEEEEccccccccccccccHcccccHHccc
Coil and Loop (DISEMBL)
MRLNLSSIISLIILAlpwlqfcetvpvptpwperfhaltyknlssdglqiahqwydwprgrnVYIIQKQLSDLLYNVEWNNGTSFYytlgengscdvvhygigiprpdfldgatylgtrftdgflcnlweKLDFIWYYEdvqtkkpvrwdfsdgisVHVMTFEVgavlhdpliqapsycfnqdtyakg
Flexible Loop (DISEMBL)
MRLNLSSIISLIILALPWLQFCETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKKPVRWDFSDGISVHVMTFEVGAVLHDPLiqapsycfnqdtyakg
Low Complexity Region (SEG)
MRLNlssiisliilALPWLQFCETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKKPVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQDTYAKG
Disordered region (IsUnstruct)
****LSSIISLIILALPWLQFCETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKKPVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQ******
Disordered Region (DISOPRED)
***NLSSIISLIILALPWLQFCETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKKPVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSY**********
Disordered Region (DISEMBL)
MRLNLSSIISLIILALPWLQFCETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKKPVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQDTYAKG
Disordered Region (DISPRO)
*RLNLSSIISLIILALPWLQFCETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKKPVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLNLSSIISLIILALPWLQFCETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKKPVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQDTYAKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q67YC9	206	Uncharacterized protein A	no	no	0.835	0.762	0.594	3e-52

>sp|Q67YC9|Y4141_ARATH Uncharacterized protein At4g14100 OS=Arabidopsis thaliana GN=At4g14100 PE=2 SV=1

 Score =  204 bits (518), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 26  PVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSF 85
           PVPTPWP +FHAL + N S D L +   WYDW  GRN  IIQ+QL  + Y++EWNNGTSF
Sbjct: 28  PVPTPWPHQFHALMFMNYSGD-LSMIDLWYDWTNGRNFNIIQEQLGGITYDLEWNNGTSF 86

Query: 86  YYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKK 145
           +YTL E+ SC      +GI RP++LDGA YLG +   GFLCN+WEK+DFIWYYEDV+TK+
Sbjct: 87  FYTLDESKSCRSGQLEVGILRPNWLDGAKYLGQQNVSGFLCNVWEKVDFIWYYEDVETKR 146

Query: 146 PVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQD 183
           PV+W F  G   H+MT+EVGAVL D   QAP YCFN++
Sbjct: 147 PVQWIFYTGREAHIMTYEVGAVLEDEKWQAPVYCFNKE 184

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
224142285	197	predicted protein [Populus trichocarpa]	0.930	0.888	0.675	2e-64
255583289	195	transferase, transferring glycosyl group	0.797	0.769	0.726	6e-60
118489734	148	unknown [Populus trichocarpa x Populus d	0.755	0.959	0.727	5e-55
317106610	218	JHL07K02.7 [Jatropha curcas]	0.840	0.724	0.613	1e-53
18403878	194	uncharacterized protein [Arabidopsis tha	0.851	0.824	0.596	4e-51
388493586	226	unknown [Lotus japonicus]	0.882	0.734	0.579	7e-51
297835420	195	hypothetical protein ARALYDRAFT_479891 [	0.851	0.820	0.590	1e-50
18414136	206	transferase-like protein [Arabidopsis th	0.835	0.762	0.594	2e-50
21592998	206	unknown [Arabidopsis thaliana]	0.835	0.762	0.594	2e-50
297804906	206	transferase, transferring glycosyl group	0.962	0.878	0.543	4e-50

>gi|224142285|ref|XP_002324489.1| predicted protein [Populus trichocarpa] gi|222865923|gb|EEF03054.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 145/182 (79%), Gaps = 7/182 (3%)

Query: 9   ISLIILAL--PWLQFCE----TVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRN 62
           ISL++L L  P LQ+ E    + P+P PWPE+FHAL Y NLSS  LQI + WYDWPRGRN
Sbjct: 12  ISLVVLQLINPSLQWPEPEYSSAPIPAPWPEQFHALLYMNLSSTHLQITNLWYDWPRGRN 71

Query: 63  VYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTD 122
           V IIQKQLS LLY+ EWNNGT+FYYTL E  SC ++   +GIPRPDFLDGA YLGT  TD
Sbjct: 72  VNIIQKQLSVLLYDTEWNNGTTFYYTLSEPHSCRIMVNDVGIPRPDFLDGAEYLGTAVTD 131

Query: 123 GFLCNLWEKLDFIWYYEDVQTKKPVRWDFSDGISVHVMTFEVGAV-LHDPLIQAPSYCFN 181
           G+LCN+WEK+D IWYYEDV TK+PVRWDF+DGIS HV+TF+VGAV L D + QAP+YCFN
Sbjct: 132 GYLCNVWEKIDTIWYYEDVYTKRPVRWDFNDGISTHVITFDVGAVLLDDSVTQAPAYCFN 191

Query: 182 QD 183
           Q+
Sbjct: 192 QE 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583289|ref|XP_002532408.1| transferase, transferring glycosyl groups, putative [Ricinus communis] gi|223527882|gb|EEF29972.1| transferase, transferring glycosyl groups, putative [Ricinus communis]

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 109/150 (72%), Positives = 124/150 (82%)

Query: 33  ERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGEN 92
           E+FHAL Y NLS   LQ++  WYDWP GRNV I QKQLS +LY++EWNNGTSFYYTL E 
Sbjct: 40  EQFHALLYMNLSKGNLQMSDLWYDWPNGRNVNIFQKQLSIILYDIEWNNGTSFYYTLEEP 99

Query: 93  GSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKKPVRWDFS 152
            SC+V+ +G+GIPRPDFLDGA YLGT  TDGFLCN+WEK+DFIWYYEDV TK+PVRWDF 
Sbjct: 100 YSCEVMEFGVGIPRPDFLDGANYLGTTVTDGFLCNVWEKVDFIWYYEDVSTKRPVRWDFY 159

Query: 153 DGISVHVMTFEVGAVLHDPLIQAPSYCFNQ 182
           DGIS HV+TFEVGAVL D L QAP+ CF Q
Sbjct: 160 DGISSHVITFEVGAVLDDSLTQAPANCFTQ 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489734|gb|ABK96668.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  219 bits (557), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 119/143 (83%), Gaps = 1/143 (0%)

Query: 42  NLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHYG 101
           NLSS  LQI + WYDWPRGRNV IIQKQLS LLY+ EWNNGT+FYYTL E  SC ++   
Sbjct: 2   NLSSTRLQITNLWYDWPRGRNVNIIQKQLSVLLYDTEWNNGTTFYYTLSEPHSCRIMVND 61

Query: 102 IGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKKPVRWDFSDGISVHVMT 161
           +GIPRPDFLDGA YLGT  TDG+LCN+WEK+D IWYYEDV TK+PVRWDF+DGIS HV+T
Sbjct: 62  VGIPRPDFLDGAEYLGTAVTDGYLCNVWEKIDTIWYYEDVYTKRPVRWDFNDGISTHVIT 121

Query: 162 FEVGAVLH-DPLIQAPSYCFNQD 183
           FEVGAVL  D + QAP+YCFNQ+
Sbjct: 122 FEVGAVLSDDSVTQAPAYCFNQE 144

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106610|dbj|BAJ53117.1| JHL07K02.7 [Jatropha curcas]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/158 (61%), Positives = 118/158 (74%)

Query: 26  PVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSF 85
           P P PWP +FH++ + N S+  LQ+   WYDWP GRN  IIQ QL  LLY++EW+NGTS+
Sbjct: 33  PTPAPWPLQFHSILFMNDSTGQLQVTDLWYDWPNGRNFNIIQNQLGKLLYDLEWDNGTSY 92

Query: 86  YYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKK 145
           YYTL  N  C V H+ +GI RP+FLDGATYLG +  DGFLCN+WEK+DFIWYYEDV TK+
Sbjct: 93  YYTLDSNQECKVRHFPVGILRPNFLDGATYLGQKQVDGFLCNVWEKVDFIWYYEDVVTKR 152

Query: 146 PVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQD 183
           PV W F  G+ +HVMTFEVGAVL D   QAP YCF ++
Sbjct: 153 PVYWVFYTGMVIHVMTFEVGAVLEDEKWQAPVYCFKEN 190

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403878|ref|NP_566739.1| uncharacterized protein [Arabidopsis thaliana] gi|21593856|gb|AAM65823.1| unknown [Arabidopsis thaliana] gi|332643289|gb|AEE76810.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/161 (59%), Positives = 116/161 (72%), Gaps = 1/161 (0%)

Query: 23  ETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNG 82
           E  PVP  WPE+FHAL   N  S  L+I   WYDW  GRN  IIQKQL  L Y++EWNNG
Sbjct: 30  EKEPVPAVWPEQFHALMLMN-KSGSLEIVDLWYDWVNGRNFNIIQKQLGKLTYDLEWNNG 88

Query: 83  TSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQ 142
           TSFYYTL  + +C  VH+ +GI RP++LDGA Y+G R  +GFLCN+WEK++F+WYYEDV 
Sbjct: 89  TSFYYTLDASKTCRTVHFEVGILRPNWLDGAKYMGQRHVNGFLCNVWEKVEFLWYYEDVV 148

Query: 143 TKKPVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQD 183
           TK+PV+W F  G   HVMTFEVGAVL D   QAP YCF+ +
Sbjct: 149 TKRPVQWIFYTGREAHVMTFEVGAVLEDEKWQAPVYCFHNE 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493586|gb|AFK34859.1| unknown [Lotus japonicus]

 Score =  205 bits (521), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 98/169 (57%), Positives = 121/169 (71%), Gaps = 3/169 (1%)

Query: 22  CETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNN 81
             + P PT WP +FH++ + N SS  LQ    WYDWP GRN  IIQ QL  L Y++EWNN
Sbjct: 28  ASSTPTPTAWPHQFHSVLFIN-SSGNLQKTDLWYDWPNGRNFNIIQHQLGVLKYDLEWNN 86

Query: 82  GTSFYYTLGE-NGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYED 140
           GTSFYYTL   N +C V+H+ +GI RP++LDGA YLG  + D FLCN+WEK+DFIWYYED
Sbjct: 87  GTSFYYTLDPFNHTCKVIHFDVGILRPNWLDGANYLGQHYADNFLCNVWEKVDFIWYYED 146

Query: 141 VQTKKPVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQ-DTYAKG 188
           V T++PV+W F  G+  HVMTFEVGAVL D   QAP YCFN+ +T+ K 
Sbjct: 147 VLTRRPVKWIFYSGMIAHVMTFEVGAVLEDAQWQAPVYCFNEAETHEKS 195

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835420|ref|XP_002885592.1| hypothetical protein ARALYDRAFT_479891 [Arabidopsis lyrata subsp. lyrata] gi|297331432|gb|EFH61851.1| hypothetical protein ARALYDRAFT_479891 [Arabidopsis lyrata subsp. lyrata]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/161 (59%), Positives = 116/161 (72%), Gaps = 1/161 (0%)

Query: 23  ETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNG 82
           E  PVP  WPE+FHAL   N  S  L+I   WYDW  GRN  IIQKQL  L Y++EWNNG
Sbjct: 31  EMEPVPAVWPEQFHALMLMN-KSGALEIVDLWYDWVNGRNFNIIQKQLGKLTYDLEWNNG 89

Query: 83  TSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQ 142
           TSFYYTL  + +C  VH+ +GI RP++LDGA YLG R  +GFLCN+WEK++F+WYYED+ 
Sbjct: 90  TSFYYTLDASRTCRTVHFEVGILRPNWLDGAKYLGQRHVNGFLCNVWEKVEFLWYYEDIV 149

Query: 143 TKKPVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQD 183
           TK+PV+W F  G   HVMTF+VGAVL D   QAP YCF+ +
Sbjct: 150 TKRPVQWIFYTGREAHVMTFDVGAVLEDEKWQAPVYCFHNE 190

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414136|ref|NP_567420.1| transferase-like protein [Arabidopsis thaliana] gi|75116576|sp|Q67YC9.1|Y4141_ARATH RecName: Full=Uncharacterized protein At4g14100; Flags: Precursor gi|51969522|dbj|BAD43453.1| unknown protein [Arabidopsis thaliana] gi|51971220|dbj|BAD44302.1| unknown protein [Arabidopsis thaliana] gi|88193798|gb|ABD42988.1| At4g14100 [Arabidopsis thaliana] gi|332657969|gb|AEE83369.1| transferase-like protein [Arabidopsis thaliana]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 26  PVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSF 85
           PVPTPWP +FHAL + N S D L +   WYDW  GRN  IIQ+QL  + Y++EWNNGTSF
Sbjct: 28  PVPTPWPHQFHALMFMNYSGD-LSMIDLWYDWTNGRNFNIIQEQLGGITYDLEWNNGTSF 86

Query: 86  YYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKK 145
           +YTL E+ SC      +GI RP++LDGA YLG +   GFLCN+WEK+DFIWYYEDV+TK+
Sbjct: 87  FYTLDESKSCRSGQLEVGILRPNWLDGAKYLGQQNVSGFLCNVWEKVDFIWYYEDVETKR 146

Query: 146 PVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQD 183
           PV+W F  G   H+MT+EVGAVL D   QAP YCFN++
Sbjct: 147 PVQWIFYTGREAHIMTYEVGAVLEDEKWQAPVYCFNKE 184

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592998|gb|AAM64947.1| unknown [Arabidopsis thaliana]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 26  PVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSF 85
           PVPTPWP +FHAL + N S D L +   WYDW  GRN  IIQ+QL  + Y++EWNNGTSF
Sbjct: 28  PVPTPWPHQFHALMFMNYSGD-LSMIDLWYDWTNGRNFNIIQEQLGGITYDLEWNNGTSF 86

Query: 86  YYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKK 145
           +YTL E+ SC      +GI RP++LDGA YLG +   GFLCN+WEK+DFIWYYEDV+TK+
Sbjct: 87  FYTLDESKSCRSGQLEVGILRPNWLDGAKYLGQQNVSGFLCNVWEKVDFIWYYEDVETKR 146

Query: 146 PVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQD 183
           PV+W F  G   H+MT+EVGAVL D   QAP YCFN++
Sbjct: 147 PVQWIFYTGREAHIMTYEVGAVLEDEKWQAPVYCFNKE 184

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804906|ref|XP_002870337.1| transferase, transferring glycosyl groups [Arabidopsis lyrata subsp. lyrata] gi|297316173|gb|EFH46596.1| transferase, transferring glycosyl groups [Arabidopsis lyrata subsp. lyrata]

 Score =  202 bits (515), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 99/182 (54%), Positives = 122/182 (67%), Gaps = 1/182 (0%)

Query: 2   RLNLSSIISLIILALPWLQFCETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGR 61
           R  L  I++ I+L           PVPTPWP +FHAL + N S D L +   WYDW  GR
Sbjct: 4   RRPLIVIVNFIVLTAGVKIATADEPVPTPWPHQFHALLFMNYSGD-LSMIDLWYDWINGR 62

Query: 62  NVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFT 121
           N  IIQ+QL  + Y++EWNNGTSF Y+L E+ SC      +GI RP++LDGA YLG +  
Sbjct: 63  NFNIIQEQLGGITYDLEWNNGTSFIYSLDESKSCRSAQLEVGILRPNWLDGAKYLGQKNV 122

Query: 122 DGFLCNLWEKLDFIWYYEDVQTKKPVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFN 181
            GFLCN+WEK+DFIWYYEDV TK+PV+W F  G   HVMT+EVGAVL D   QAP YCFN
Sbjct: 123 SGFLCNVWEKVDFIWYYEDVITKRPVQWIFYTGREAHVMTYEVGAVLEDEKWQAPVYCFN 182

Query: 182 QD 183
           ++
Sbjct: 183 KE 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2095218	194	AT3G23760 "AT3G23760" [Arabido	0.851	0.824	0.596	5.6e-52
TAIR|locus:2831548	206	AT4G14100 "AT4G14100" [Arabido	0.835	0.762	0.594	1.2e-51

TAIR|locus:2095218 AT3G23760 "AT3G23760" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 96/161 (59%), Positives = 116/161 (72%)

Query:    23 ETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNG 82
             E  PVP  WPE+FHAL   N  S  L+I   WYDW  GRN  IIQKQL  L Y++EWNNG
Sbjct:    30 EKEPVPAVWPEQFHALMLMN-KSGSLEIVDLWYDWVNGRNFNIIQKQLGKLTYDLEWNNG 88

Query:    83 TSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQ 142
             TSFYYTL  + +C  VH+ +GI RP++LDGA Y+G R  +GFLCN+WEK++F+WYYEDV 
Sbjct:    89 TSFYYTLDASKTCRTVHFEVGILRPNWLDGAKYMGQRHVNGFLCNVWEKVEFLWYYEDVV 148

Query:   143 TKKPVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQD 183
             TK+PV+W F  G   HVMTFEVGAVL D   QAP YCF+ +
Sbjct:   149 TKRPVQWIFYTGREAHVMTFEVGAVLEDEKWQAPVYCFHNE 189

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2831548 AT4G14100 "AT4G14100" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 94/158 (59%), Positives = 116/158 (73%)

Query:    26 PVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSF 85
             PVPTPWP +FHAL + N S D L +   WYDW  GRN  IIQ+QL  + Y++EWNNGTSF
Sbjct:    28 PVPTPWPHQFHALMFMNYSGD-LSMIDLWYDWTNGRNFNIIQEQLGGITYDLEWNNGTSF 86

Query:    86 YYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKK 145
             +YTL E+ SC      +GI RP++LDGA YLG +   GFLCN+WEK+DFIWYYEDV+TK+
Sbjct:    87 FYTLDESKSCRSGQLEVGILRPNWLDGAKYLGQQNVSGFLCNVWEKVDFIWYYEDVETKR 146

Query:   146 PVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQD 183
             PV+W F  G   H+MT+EVGAVL D   QAP YCFN++
Sbjct:   147 PVQWIFYTGREAHIMTYEVGAVLEDEKWQAPVYCFNKE 184


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.141   0.488    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      188       178   0.00086  109 3  12 22  0.40    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  156 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.90u 0.20s 12.10t   Elapsed:  00:00:00
  Total cpu time:  11.90u 0.20s 12.10t   Elapsed:  00:00:00
  Start:  Thu May  9 18:19:44 2013   End:  Thu May  9 18:19:44 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVIII.2913.1 hypothetical protein (159 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
PF00811	133	Ependymin: Ependymin; InterPro: IPR001299 Ependymi	96.75
PF14371	89	DUF4412: Domain of unknown function (DUF4412)	96.74
smart00026	191	EPEND Ependymins. Ependymins are the predominant p	91.71
PF09865	214	DUF2092: Predicted periplasmic protein (DUF2092);	81.22

>PF00811 Ependymin: Ependymin; InterPro: IPR001299 Ependymins are secretory proteins found predominantly in the cerebrospinal fluid of teleost fish [, ]

Probab=96.75  E-value=0.017  Score=45.53  Aligned_cols=99  Identities=26%  Similarity=0.352  Sum_probs=66.6

Q ss_pred             ecCceeEEEEcCCCCceeEeecCcCCCCCCcc-ccceecceeeeCce-------eeeeccccC--cEEEEEeeccC---C
Q 029792           79 WNNGTSFYYTLGENGSCDVVHYGIGIPRPDFL-DGATYLGTRFTDGF-------LCNLWEKLD--FIWYYEDVQTK---K  145 (188)
Q Consensus        79 w~NgTsfy~~l~~~~~Cr~~~~~vGiL~PdWL-~gA~YlG~~~v~G~-------~C~vW~K~d--fi~Yyedv~T~---r  145 (188)
                      .+.|+.|-++ .++++|++.....- .+|-=+ ++|+|+|+...++-       ..+.|...-  .--.|.-..|.   .
T Consensus        19 y~eg~~Y~Id-~~~~~C~k~~L~~~-f~~~~IP~nAt~~g~~~lG~~~~~~~gl~v~~w~~~~~~~~g~y~~~~t~~gCi   96 (133)
T PF00811_consen   19 YNEGVMYEID-LKNGSCTKSPLTGP-FHPFCIPPNATFLGQFYLGSSSIPGDGLLVDSWSGKVPDGSGIYSITVTEFGCI   96 (133)
T ss_pred             ccCCcEEEEE-CCCCcEeEEECCCC-cccccCCCCCEEEEEEEeCCCCCCCCcEEEEEeccCccCCceEEEEEccCCCEE
Confidence            3578888887 45679999887642 333323 58999988887665       999999543  22445544442   8


Q ss_pred             ceEeeecCCceeeEE--EEEeCcccCC-CCCccCCCc
Q 029792          146 PVRWDFSDGISVHVM--TFEVGAVLHD-PLIQAPSYC  179 (188)
Q Consensus       146 PV~W~F~~G~~~hVm--tFevG~vleD-~~wqaP~YC  179 (188)
                      ||+-.|+...+.+++  -|++=.-|+| +.|..|++|
T Consensus        97 PV~~~~~~~~~~~~~~~f~nvt~gI~DP~vF~pP~~C  133 (133)
T PF00811_consen   97 PVSESFYGEKSGWVTTSFFNVTIGIKDPSVFDPPSFC  133 (133)
T ss_pred             EEEEEEECCCCcEEEEEEEeeEEcCCChhhcCCCCCC
Confidence            999998865443333  3444444656 699999999

A bound form of the glycoproteins is associated with the extracellular matrix, probably with collagen fibrils, that may be the functional form of ependymins []. The proteins bind calcium via N-linked sialic acid residues. The molecular function of ependymins appear to be related to cell contact phenomena involving the extracellular matrix [].; GO: 0005509 calcium ion binding, 0007160 cell-matrix adhesion, 0005576 extracellular region

>PF14371 DUF4412: Domain of unknown function (DUF4412)

Probab=96.74  E-value=0.0043  Score=44.18  Aligned_cols=64  Identities=25%  Similarity=0.431  Sum_probs=48.1

Q ss_pred             eecceeeeCceeeeeccc--cC-----cEEEEEe------------eccCCceEeeecC-Cceee--EEEEEeCcccCCC
Q 029792          114 TYLGTRFTDGFLCNLWEK--LD-----FIWYYED------------VQTKKPVRWDFSD-GISVH--VMTFEVGAVLHDP  171 (188)
Q Consensus       114 ~YlG~~~v~G~~C~vW~K--~d-----fi~Yyed------------v~T~rPV~W~F~~-G~~~h--VmtFevG~vleD~  171 (188)
                      +=+|++.|+|+.|+.|.-  .+     .+|+-.|            ...|.|||-.-.+ |....  +...+.+.+ +++
T Consensus         2 ~~tGt~tI~G~~c~ky~v~~~~~~~~~~~W~t~d~~~~~~~~~~~~~~~G~pl~~~~~~~~~~~~~~~~~i~~~~~-~~~   80 (89)
T PF14371_consen    2 TKTGTKTIAGYKCEKYEVTMDGGGVTMEVWITKDGAGSLQKAQELKKLKGFPLKTESTDNGGGMEMEVTSIKRGPV-PAS   80 (89)
T ss_pred             eECCCEEECCEEeEEEEEEecCCCeEEEEEEcCCccchhhhhhhhccCCCeEEEEEEeCCCcEEEEEEEEeEEcCC-Chh
Confidence            347999999999999993  23     5666666            2357799987664 33333  888999996 999


Q ss_pred             CCccCCC
Q 029792          172 LIQAPSY  178 (188)
Q Consensus       172 ~wqaP~Y  178 (188)
                      .|++|+-
T Consensus        81 ~F~iP~g   87 (89)
T PF14371_consen   81 LFEIPAG   87 (89)
T ss_pred             HcCCCCC
Confidence            9999973

>smart00026 EPEND Ependymins

Probab=91.71  E-value=2.7  Score=36.08  Aligned_cols=147  Identities=16%  Similarity=0.199  Sum_probs=82.5

Q ss_pred             chhhhhhhhccCCCC-CceeeeeeeeCCCCcc-hhhhhhhh-cCceee--eEecCceeEEEEcCCCCceeEeecCcCCCC
Q 029792           32 PERFHALTYKNLSSD-GLQIAHQWYDWPRGRN-VYIIQKQL-SDLLYN--VEWNNGTSFYYTLGENGSCDVVHYGIGIPR  106 (188)
Q Consensus        32 P~qFHa~l~~nl~~G-~l~~~dl~YDwp~gRn-~niIq~Ql-~~~lyd--~Ew~NgTsfy~~l~~~~~Cr~~~~~vGiL~  106 (188)
                      |+|+...+-.-..+| .....+.=||--|.|- |--....+ ....||  +..+-|+-|=++ -.+++|+......- -+
T Consensus         6 P~~~eg~~~v~~~~~~~~a~g~~sYD~~nkr~R~~E~~~~~n~t~~~d~L~lf~eGv~Y~id-~kn~sC~K~~L~~~-~h   83 (191)
T smart00026        6 PPLTSGTMKVASTGGHDLASGEFSYDSKAKKLRFVEDTMHANKTSHLDVLIHFEEGVFYDID-SKNQSCKKETLQSR-KH   83 (191)
T ss_pred             chhceeEEEEEeCCCceEEEEEEEeccCCCEEEEEecccccCCceeeEEEEEecCCcEEEEe-cCCCceeeeecCCC-cc
Confidence            556655554321233 4555677799998887 21111122 233444  234678777666 46779977655422 12


Q ss_pred             CCcc-ccceecceeeeC-------ceeeeeccc-c-CcEEEEEeeccC---CceEeeecC---CceeeEEEEEeCcccCC
Q 029792          107 PDFL-DGATYLGTRFTD-------GFLCNLWEK-L-DFIWYYEDVQTK---KPVRWDFSD---GISVHVMTFEVGAVLHD  170 (188)
Q Consensus       107 PdWL-~gA~YlG~~~v~-------G~~C~vW~K-~-dfi~Yyedv~T~---rPV~W~F~~---G~~~hVmtFevG~vleD  170 (188)
                      |-=+ ++||++|+-..+       |...++|+. + +..-+|.-..|.   .||.=.|++   |.+..-  |+|=.-|+|
T Consensus        84 p~eIP~nAT~~ge~~lGs~~~~~~Gl~v~~W~g~~p~~~g~y~~~~T~~gCiPVs~~~~~~~~~~~~~F--fdv~~gI~D  161 (191)
T smart00026       84 LLEIPPDATHESELYLGSPTIQEQGLRVRVWNGKVPELHGHYSLSTTSCGCLPLSGSYSTDKKDLLFSF--FGVETEVKD  161 (191)
T ss_pred             cccCCCCCceEEEEEecCCCCCcCCEEEEEecCcCCCcCccEEEEEecCCEEEEEEEEEeccceEEEEE--EeeEeccCC
Confidence            2111 488888888874       899999953 2 223344443343   688866653   322222  233222444


Q ss_pred             -CCCccCCCccCC
Q 029792          171 -PLIQAPSYCFNQ  182 (188)
Q Consensus       171 -~~wqaP~YCf~~  182 (188)
                       +.|-.|++|..-
T Consensus       162 P~vFiPP~~C~~~  174 (191)
T smart00026      162 PEVFVPPSYCEGV  174 (191)
T ss_pred             ccccCCccccCCc
Confidence             599999999863

Ependymins are the predominant proteins in the cerebrospinal fluid (CSF) of teleost fish. They have been implicated in the neurochemistry of memory and neuronal regeneration. They are glycoproteins of about 200 amino acids that can bind calcium. Four cysteines are conserved that probably form disulfide bonds.

>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function

Probab=81.22  E-value=4.7  Score=34.64  Aligned_cols=61  Identities=18%  Similarity=0.355  Sum_probs=41.6

Q ss_pred             ccceecceeeeCceeeeecc----ccCcEEEEEeeccCCceEeeec----CCceeeEEEEE---eCcccCCC
Q 029792          111 DGATYLGTRFTDGFLCNLWE----KLDFIWYYEDVQTKKPVRWDFS----DGISVHVMTFE---VGAVLHDP  171 (188)
Q Consensus       111 ~gA~YlG~~~v~G~~C~vW~----K~dfi~Yyedv~T~rPV~W~F~----~G~~~hVmtFe---vG~vleD~  171 (188)
                      ..|.|+|++.|+|..||-..    .+|+.-.=++-..--|+|.+.-    .|..+|..+|.   .+..++++
T Consensus       126 ~~~~~vG~~~V~G~~c~HlAfr~~~~DwQiWI~~g~~PLP~k~vIT~k~~~~~PQy~~~~~~W~~~p~~~~~  197 (214)
T PF09865_consen  126 TSAKYVGQSVVGGVECDHLAFRNDDVDWQIWIADGDKPLPRKYVITYKTDPGSPQYSAEFSDWNLDPKLPAD  197 (214)
T ss_pred             eEEEEeeeEEECCEEeEEEEEecCCceEEEEEcCCCcceeeEEEEEECCCCCCceEEEEEecccCCCCCCcc
Confidence            37999999999999999765    4554444444444478886532    48888877775   44455444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00