Citrus Sinensis ID: 030190

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MACYCNRSLISSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTGDSD
Secondary Structure (PSIPRED)
ccccccHHHHHHccccccccccccEEEEccccccEEccccEEEcccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccEEccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEccccccccccccccccccccccccEEccccEEEccccccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHccccc
Coil and Loop (DISEMBL)
macycnrslisskldpcspfsssslrlafhrnssvllgggiklhdsstiskkaqlsplsfsASFRNHICRaaeykfpdpipefadseTQKFRTHLLNKLAkkdmfgdsLEDVVGICTEIFSTFlhseyggpgtllvlPFIDMAdtlnerglpggpQAARAAVKWAQRHVdkdwkewtgdsd
Flexible Loop (DISEMBL)
macycnrslisskldpcspFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDkdwkewtgdsd
Low Complexity Region (SEG)
MACYCNRSLISSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTGDSD
Disordered region (IsUnstruct)
***YC********************RLAFHRNSSVLLGGGIKLH*************LSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGL******ARAAVKWAQRHVDKDWK*******
Disordered Region (DISOPRED)
*******SLISSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLH****************SASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERG*P***QAARAAVKWAQRHVDKDW*EW*****
Disordered Region (DISEMBL)
MACYCNRSLISSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPG***************VDKDWKEWTGDSD
Disordered Region (DISPRO)
****C***LISSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLHDS*TI****QLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MACYCNRSLISSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTGDSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
225424758	192	PREDICTED: uncharacterized protein LOC10	0.751	0.708	0.789	2e-57
255588186	188	conserved hypothetical protein [Ricinus	0.690	0.664	0.808	2e-54
449434881	169	PREDICTED: uncharacterized protein LOC10	0.657	0.704	0.798	3e-54
351734434	173	uncharacterized protein LOC100306067 pre	0.734	0.768	0.740	8e-54
18391169	179	uncharacterized protein [Arabidopsis tha	0.651	0.659	0.788	4e-53
388507390	182	unknown [Lotus japonicus]	0.734	0.730	0.694	9e-52
297843868	180	hypothetical protein ARALYDRAFT_471166 [	0.651	0.655	0.771	4e-51
357516739	172	hypothetical protein MTR_8g063150 [Medic	0.707	0.744	0.748	8e-47
224108113	96	predicted protein [Populus trichocarpa]	0.508	0.958	0.826	1e-40
147777968	170	hypothetical protein VITISV_018708 [Viti	0.508	0.541	0.849	1e-40

>gi|225424758|ref|XP_002268027.1| PREDICTED: uncharacterized protein LOC100260319 [Vitis vinifera] gi|296086507|emb|CBI32096.3| unnamed protein product [Vitis vinifera]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 120/138 (86%), Gaps = 2/138 (1%)

Query: 43  LHDSSTISKKAQLSPLSFSAS-FRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAK 101
           LH S T   + QL  L FS+S F NHICRAAEYKFPDPIPEFA  ET+KFRTHLLNK +K
Sbjct: 53  LHSSLTTKLQPQLHSLVFSSSSFANHICRAAEYKFPDPIPEFAQVETEKFRTHLLNKFSK 112

Query: 102 KDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAA 161
           KD++G+S+E+VVGICTEIFSTFLH+EYGGPGTLLV+PFIDMADTLNERGLPG  QAARAA
Sbjct: 113 KDIYGESVEEVVGICTEIFSTFLHTEYGGPGTLLVIPFIDMADTLNERGLPGS-QAARAA 171

Query: 162 VKWAQRHVDKDWKEWTGD 179
           VKWAQ HVDKDW EWTGD
Sbjct: 172 VKWAQDHVDKDWNEWTGD 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588186|ref|XP_002534527.1| conserved hypothetical protein [Ricinus communis] gi|223525108|gb|EEF27857.1| conserved hypothetical protein [Ricinus communis]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/125 (80%), Positives = 108/125 (86%)

Query: 54  QLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVV 113
            L P        NHICRAAEYKFPDPIPEFAD ET+KFRTHL  KL+KK + GDS+E+VV
Sbjct: 60  HLFPYVTKNKGNNHICRAAEYKFPDPIPEFADVETEKFRTHLQKKLSKKGVCGDSIEEVV 119

Query: 114 GICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDW 173
           GICTEIFSTFLHSEYGGPGTLLV+PF DMADT+NERGLPGGPQAARAAVKWAQ HVDKDW
Sbjct: 120 GICTEIFSTFLHSEYGGPGTLLVIPFCDMADTINERGLPGGPQAARAAVKWAQDHVDKDW 179

Query: 174 KEWTG 178
           KEWTG
Sbjct: 180 KEWTG 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434881|ref|XP_004135224.1| PREDICTED: uncharacterized protein LOC101210245 [Cucumis sativus] gi|449527396|ref|XP_004170697.1| PREDICTED: uncharacterized LOC101210245 [Cucumis sativus]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 95/119 (79%), Positives = 109/119 (91%)

Query: 61  SASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIF 120
           S+SF  HIC AAEYKFPDPIPEFA +ET+KFR HLL KL+K+D++GDSL+ VVGICTEIF
Sbjct: 48  SSSFPTHICTAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKRDIYGDSLQQVVGICTEIF 107

Query: 121 STFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTGD 179
           +TF+H+EYGGPGTLLVLPFIDM+D +NERGLPGGPQAARAAVKWAQ HVDKDW +WTGD
Sbjct: 108 NTFMHTEYGGPGTLLVLPFIDMSDAINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGD 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734434|ref|NP_001237024.1| uncharacterized protein LOC100306067 precursor [Glycine max] gi|255627431|gb|ACU14060.1| unknown [Glycine max]

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 100/135 (74%), Positives = 120/135 (88%), Gaps = 2/135 (1%)

Query: 48  TISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGD 107
           ++  + + S L FS++ R  + RAAEYKFPDPIPEFAD+ETQKF++HLL KL+KKDM+G+
Sbjct: 38  SVKGRRKFSTLPFSSTKR-LVTRAAEYKFPDPIPEFADAETQKFKSHLLKKLSKKDMYGE 96

Query: 108 SLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQR 167
           S+E+VVGICTEIFSTFLHSEYGGPGTLLVLPF+DMAD LNE+GLPGGPQAARAA+KWAQ 
Sbjct: 97  SIEEVVGICTEIFSTFLHSEYGGPGTLLVLPFVDMADALNEQGLPGGPQAARAAIKWAQD 156

Query: 168 HVDKDWKEWT-GDSD 181
           HVDKDWK WT GD++
Sbjct: 157 HVDKDWKGWTNGDNN 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18391169|ref|NP_563872.1| uncharacterized protein [Arabidopsis thaliana] gi|145323826|ref|NP_001077502.1| uncharacterized protein [Arabidopsis thaliana] gi|5091545|gb|AAD39574.1|AC007067_14 T10O24.14 [Arabidopsis thaliana] gi|21554792|gb|AAM63692.1| unknown [Arabidopsis thaliana] gi|149944329|gb|ABR46207.1| At1g10522 [Arabidopsis thaliana] gi|332190468|gb|AEE28589.1| uncharacterized protein [Arabidopsis thaliana] gi|332190469|gb|AEE28590.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 108/118 (91%)

Query: 61  SASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIF 120
           S S R  +CRAAEYKFPDPIPEFA++ET+KFR H+LNKL+K+D+F DS++++VG+CTEIF
Sbjct: 60  SLSRRGFVCRAAEYKFPDPIPEFAEAETEKFRDHMLNKLSKRDLFEDSVDEIVGVCTEIF 119

Query: 121 STFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTG 178
            TFL SEYGGPGTLLV+PFIDMADTLNER LPGGPQAARAA+KWAQ HVDKDWKEWTG
Sbjct: 120 ETFLRSEYGGPGTLLVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEWTG 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507390|gb|AFK41761.1| unknown [Lotus japonicus]

 Score =  208 bits (529), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 93/134 (69%), Positives = 116/134 (86%), Gaps = 1/134 (0%)

Query: 48  TISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGD 107
           +++ + +L+ L FS++ R  + RAAEYKFPDPIPEFAD+ET+KF++HLLNKL+K+D++GD
Sbjct: 48  SVNGRRKLATLPFSSTKR-FVIRAAEYKFPDPIPEFADAETEKFKSHLLNKLSKRDIYGD 106

Query: 108 SLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQR 167
           S+ +VVG+CTEIF +FLHSEYGGPGTLLV PF DMAD ++ERGLPGGPQAAR AVKWAQ 
Sbjct: 107 SVGEVVGVCTEIFGSFLHSEYGGPGTLLVNPFADMADAVSERGLPGGPQAARVAVKWAQN 166

Query: 168 HVDKDWKEWTGDSD 181
           HVDKDW EWTG  D
Sbjct: 167 HVDKDWNEWTGGGD 180

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843868|ref|XP_002889815.1| hypothetical protein ARALYDRAFT_471166 [Arabidopsis lyrata subsp. lyrata] gi|297335657|gb|EFH66074.1| hypothetical protein ARALYDRAFT_471166 [Arabidopsis lyrata subsp. lyrata]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 91/118 (77%), Positives = 105/118 (88%)

Query: 61  SASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIF 120
           S S R  +CRAAEYKFPDPIPEFA++ET+KFR H+  KL+K+D+F DS++++VGICTEIF
Sbjct: 62  SLSRRGFVCRAAEYKFPDPIPEFAEAETEKFRDHMSKKLSKRDLFEDSVDEIVGICTEIF 121

Query: 121 STFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTG 178
            TFL SEYGGPGTLLV+PFIDMADTL ER LPGGPQAARAA+KWAQ HVDKDWKEWTG
Sbjct: 122 GTFLRSEYGGPGTLLVIPFIDMADTLKERELPGGPQAARAAIKWAQDHVDKDWKEWTG 179

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516739|ref|XP_003628658.1| hypothetical protein MTR_8g063150 [Medicago truncatula] gi|355522680|gb|AET03134.1| hypothetical protein MTR_8g063150 [Medicago truncatula] gi|388491344|gb|AFK33738.1| unknown [Medicago truncatula]

 Score =  191 bits (486), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 98/131 (74%), Positives = 112/131 (85%), Gaps = 3/131 (2%)

Query: 48  TISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGD 107
           +I++K    P S   S +  I RAAEYKFPDPIPEFADSET+KF+ HLLNKL+KKD+F +
Sbjct: 40  SINRKVSTLPFS---SIKRSITRAAEYKFPDPIPEFADSETEKFQNHLLNKLSKKDVFEE 96

Query: 108 SLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQR 167
           S+E+VVG+CTEIFSTFLHSEYGGPGTLLV PFIDMAD +NERGLPGGPQAARAA+ WAQ 
Sbjct: 97  SVEEVVGVCTEIFSTFLHSEYGGPGTLLVDPFIDMADIVNERGLPGGPQAARAAINWAQA 156

Query: 168 HVDKDWKEWTG 178
           HVDKDW EWTG
Sbjct: 157 HVDKDWNEWTG 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108113|ref|XP_002314726.1| predicted protein [Populus trichocarpa] gi|222863766|gb|EEF00897.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 85/92 (92%)

Query: 87  ETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTL 146
           ET+KF+THL  KL KKD++GDSLE+VVGICTEIFSTFLH+EYGGPGTLLV PFIDMADT+
Sbjct: 1   ETEKFKTHLSKKLTKKDIYGDSLEEVVGICTEIFSTFLHAEYGGPGTLLVTPFIDMADTV 60

Query: 147 NERGLPGGPQAARAAVKWAQRHVDKDWKEWTG 178
           NE+GLPGGP+AAR AVKWAQ HVD DWKEWTG
Sbjct: 61  NEQGLPGGPEAARVAVKWAQAHVDNDWKEWTG 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777968|emb|CAN65133.1| hypothetical protein VITISV_018708 [Vitis vinifera]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 87/93 (93%), Gaps = 1/93 (1%)

Query: 87  ETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTL 146
           ET+KFRTHLLNK +KKD++G S+E+VVGICTEIFSTFLH+EYGGPGTLLV+PFIDMADTL
Sbjct: 76  ETEKFRTHLLNKFSKKDIYGXSVEEVVGICTEIFSTFLHTEYGGPGTLLVIPFIDMADTL 135

Query: 147 NERGLPGGPQAARAAVKWAQRHVDKDWKEWTGD 179
           NERGLP G QAARAAVKWAQ HVDKDW EWTGD
Sbjct: 136 NERGLP-GSQAARAAVKWAQDHVDKDWNEWTGD 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:505006116	179	PRIN2 "AT1G10522" [Arabidopsis	0.944	0.955	0.611	2.4e-51

TAIR|locus:505006116 PRIN2 "AT1G10522" [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 107/175 (61%), Positives = 131/175 (74%)

Query:     6 NRSLISSKLDPCSPFSSSSLRLAFHRNSS-VLLGGGIKLHDSSTISKKAQLSPLSFSA-S 63
             + +L SS+L   +  SS S R A    SS   +   IK         + ++   S S+ S
Sbjct:     5 HEALFSSRLLQVN--SSFSFRCALPIISSPAAVSCAIKSTQFFKQRCRTKVRDFSLSSLS 62

Query:    64 FRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTF 123
              R  +CRAAEYKFPDPIPEFA++ET+KFR H+LNKL+K+D+F DS++++VG+CTEIF TF
Sbjct:    63 RRGFVCRAAEYKFPDPIPEFAEAETEKFRDHMLNKLSKRDLFEDSVDEIVGVCTEIFETF 122

Query:   124 LHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTG 178
             L SEYGGPGTLLV+PFIDMADTLNER LPGGPQAARAA+KWAQ HVDKDWKEWTG
Sbjct:   123 LRSEYGGPGTLLVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEWTG 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      181       181   0.00095  109 3  11 22  0.42    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  173 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.33u 0.14s 17.47t   Elapsed:  00:00:01
  Total cpu time:  17.33u 0.14s 17.47t   Elapsed:  00:00:01
  Start:  Fri May 10 12:30:49 2013   End:  Fri May 10 12:30:50 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009642 "response to light intensity" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0042646 "plastid nucleoid" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028892001 SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (192 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00