Citrus Sinensis ID: 030383

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MAITCSSSSLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQVIIFLVQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEccHHHccccccccccccccEEEEEEccccEEEEEEEcccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEcccccHEEEcccccccccccccccccEcEccEEEccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHccccEEEEEEcHHHHHcccccccccccccEEEEEEccccEEEEEEcccHHHHHHHHHcc
Coil and Loop (DISEMBL)
maitcsssslicfssdfassslnlfyskpniiirthllfcprnqkplnssvsdkrrnrvsffsgfSTKRVESFKEELFQAIkpldrgaeaspedQARVDQIARKLEAVNDIkeplksnllngkWELLYTTSQSLlqtkrpkflrpngkiyqaiNIDTLRaqnietwpFFNQVIIFLVQ
Flexible Loop (DISEMBL)
maitcsssslicFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQkplnssvsdkrrnrvsffsgfstkrveSFKEELFQAIKpldrgaeaspedqARVDQIARKLEavndikeplksnllngkwELLYTTSQSllqtkrpkflrpngKIYQAINIDTLRAQNIETWPFFNQVIIFLVQ
Low Complexity Region (SEG)
MAITCsssslicfssdfassslnlfYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEllyttsqsllqtKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQVIIFLVQ
Disordered region (IsUnstruct)
********SLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPR*******************F********************************************AVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQVIIFLV*
Disordered Region (DISOPRED)
**************************************************************************EELFQAIKPLDRGAEA**EDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQVIIFLV*
Disordered Region (DISEMBL)
MAITCSSSSLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDR*********ARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQVIIFLVQ
Disordered Region (DISPRO)
****CSSSSLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQ****SS*SDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQVIIFLVQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAITCSSSSLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQVIIFLVQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
Q9LU85	242	Probable plastid-lipid-as	yes	no	0.674	0.495	0.569	3e-35
Q6DBN2	234	Probable plastid-lipid-as	no	no	0.668	0.508	0.559	1e-32
Q6K439	319	Probable plastid-lipid-as	no	no	0.550	0.307	0.320	0.0004
O81439	318	Probable plastid-lipid-as	no	no	0.544	0.305	0.32	0.0004

>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1

 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/130 (56%), Positives = 97/130 (74%), Gaps = 10/130 (7%)

Query: 52  SDKRRNRV----SFFSGFSTK-----RVESFKEELFQAIKPLDRGAEASPEDQARVDQIA 102
            D+ R RV    SF   F T+     + +  K+EL +AI+PL+RGA ASP+DQ R+DQ+A
Sbjct: 44  GDRERLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLA 103

Query: 103 RKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQN 162
           RK+EAVN  KEPLKS+L+NGKWEL+YTTS S+LQ K+P+FLR     YQ+IN+DTL+ QN
Sbjct: 104 RKVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITN-YQSINVDTLKVQN 162

Query: 163 IETWPFFNQV 172
           +ETWPF+N V
Sbjct: 163 METWPFYNSV 172

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN2|PAP5_ARATH Probable plastid-lipid-associated protein 5, chloroplastic OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/127 (55%), Positives = 95/127 (74%), Gaps = 8/127 (6%)

Query: 52  SDKRRNRV-SFFS-----GFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKL 105
            D+ R R+ + FS     G + KR +  K EL +AI+PL+RGA ASP+DQ  +DQ+ARK+
Sbjct: 39  GDRERLRIQAVFSFPPRNGGAEKR-KQLKHELVEAIEPLERGATASPDDQLLIDQLARKV 97

Query: 106 EAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIET 165
           EAVN  KEPLKS+L+NGKWEL+YTTS ++LQ K+P+FLR +   YQ IN+DTL+ Q +ET
Sbjct: 98  EAVNPTKEPLKSDLINGKWELIYTTSAAILQAKKPRFLR-SLTNYQCINMDTLKVQRMET 156

Query: 166 WPFFNQV 172
           WPF+N V
Sbjct: 157 WPFYNSV 163

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 67  TKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWE 125
           T  V   K +L +A+   +RG  AS E +A V ++  +LEA N    P ++  LLNGKW 
Sbjct: 89  TSEVAELKAKLKEALYGTERGLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWI 148

Query: 126 LLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQ 171
           L YT+   L        L  +G + Q + ++ + +Q I++  F  Q
Sbjct: 149 LAYTSFSQLFP------LLGSGSLPQLVKVEEI-SQTIDSENFTVQ 187

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 66  STKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSN-LLNGKW 124
           S +  E  K  L  ++   DRG   S + +A + ++  +LE+ N    P ++  LLNGKW
Sbjct: 87  SVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPTPAPNEALFLLNGKW 146

Query: 125 ELLYTTSQSL--LQTKRPKFLRPNGKIYQAINIDTLRAQN 162
            L YT+   L  L ++R + L    +I Q I+ D+   QN
Sbjct: 147 ILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQN 186

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
356525936	240	PREDICTED: probable plastid-lipid-associ	0.825	0.612	0.662	3e-50
356557505	245	PREDICTED: probable plastid-lipid-associ	0.707	0.514	0.765	1e-49
298204587	320	unnamed protein product [Vitis vinifera]	0.842	0.468	0.690	3e-49
225448063	256	PREDICTED: probable plastid-lipid-associ	0.842	0.585	0.690	4e-49
357445617	248	hypothetical protein MTR_2g007640 [Medic	0.966	0.693	0.576	6e-48
217073420	248	unknown [Medicago truncatula] gi|3885181	0.966	0.693	0.571	3e-47
224070527	225	predicted protein [Populus trichocarpa]	0.685	0.542	0.741	3e-45
89355891	174	plastid fibrillin 3 [Coffea canephora]	0.606	0.620	0.768	1e-43
255575408	262	structural molecule, putative [Ricinus c	0.960	0.652	0.543	1e-41
449449595	243	PREDICTED: probable plastid-lipid-associ	0.696	0.510	0.679	2e-41

>gi|356525936|ref|XP_003531577.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like isoform 1 [Glycine max]

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/157 (66%), Positives = 120/157 (76%), Gaps = 10/157 (6%)

Query: 23  NLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFST--KRVESFKEELFQA 80
           +LF S P  +  THL+        L  + S K  N VSFF GF T  + V+S K +L++A
Sbjct: 27  SLFSSSPQKLNTTHLI--------LQVADSGKWSNMVSFFPGFITEGRDVQSLKVDLYEA 78

Query: 81  IKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRP 140
           I PLDRGAEA+PEDQ RVDQIARKLEAVN +KEPLKS+LLNGKWEL YTTSQS+LQT+RP
Sbjct: 79  IAPLDRGAEATPEDQQRVDQIARKLEAVNPVKEPLKSDLLNGKWELFYTTSQSILQTQRP 138

Query: 141 KFLRPNGKIYQAINIDTLRAQNIETWPFFNQVIIFLV 177
           K LRPNGKIYQAIN+DTLRAQNIETWPF+NQ    LV
Sbjct: 139 KLLRPNGKIYQAINVDTLRAQNIETWPFYNQATANLV 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557505|ref|XP_003547056.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Glycine max]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/128 (76%), Positives = 107/128 (83%), Gaps = 2/128 (1%)

Query: 52  SDKRRNRVSFFSGFSTKR--VESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVN 109
           S K RN VSFF GF TK   V+  K EL++AI PLDRGAEA+PEDQ RVDQIARKLEAVN
Sbjct: 53  SGKWRNMVSFFPGFLTKGSDVQKLKVELYEAIAPLDRGAEATPEDQQRVDQIARKLEAVN 112

Query: 110 DIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFF 169
            +KEPLKS LLNGKWEL YTTSQS+LQT+RPK LRPNGKIYQAIN+DTLRAQNIETWPF+
Sbjct: 113 PVKEPLKSGLLNGKWELFYTTSQSILQTQRPKLLRPNGKIYQAINVDTLRAQNIETWPFY 172

Query: 170 NQVIIFLV 177
           NQ    LV
Sbjct: 173 NQATANLV 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204587|emb|CBI23862.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 115/152 (75%), Gaps = 2/152 (1%)

Query: 28  KPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKR--VESFKEELFQAIKPLD 85
           KP  I+ T   +     K L  S   K R  VSFF  F TK    E+ KEELF AI PLD
Sbjct: 104 KPKPILTTTQTYHYHPHKALEFSGYWKWRTGVSFFPSFLTKSKDSEALKEELFTAIAPLD 163

Query: 86  RGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRP 145
           RGAEA+ +DQ  VDQIARKLEAVN IKEPLKS+LLNGKWELLYTTSQS+LQT+RPKFLRP
Sbjct: 164 RGAEATAQDQELVDQIARKLEAVNKIKEPLKSDLLNGKWELLYTTSQSVLQTQRPKFLRP 223

Query: 146 NGKIYQAINIDTLRAQNIETWPFFNQVIIFLV 177
           NGKIYQAIN+DTLRAQN+ETWPFFNQV   LV
Sbjct: 224 NGKIYQAINVDTLRAQNMETWPFFNQVTANLV 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448063|ref|XP_002273405.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Vitis vinifera]

 Score =  199 bits (506), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 115/152 (75%), Gaps = 2/152 (1%)

Query: 28  KPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKR--VESFKEELFQAIKPLD 85
           KP  I+ T   +     K L  S   K R  VSFF  F TK    E+ KEELF AI PLD
Sbjct: 40  KPKPILTTTQTYHYHPHKALEFSGYWKWRTGVSFFPSFLTKSKDSEALKEELFTAIAPLD 99

Query: 86  RGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRP 145
           RGAEA+ +DQ  VDQIARKLEAVN IKEPLKS+LLNGKWELLYTTSQS+LQT+RPKFLRP
Sbjct: 100 RGAEATAQDQELVDQIARKLEAVNKIKEPLKSDLLNGKWELLYTTSQSVLQTQRPKFLRP 159

Query: 146 NGKIYQAINIDTLRAQNIETWPFFNQVIIFLV 177
           NGKIYQAIN+DTLRAQN+ETWPFFNQV   LV
Sbjct: 160 NGKIYQAINVDTLRAQNMETWPFFNQVTANLV 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445617|ref|XP_003593086.1| hypothetical protein MTR_2g007640 [Medicago truncatula] gi|124360438|gb|ABN08448.1| PAP fibrillin [Medicago truncatula] gi|355482134|gb|AES63337.1| hypothetical protein MTR_2g007640 [Medicago truncatula]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 105/182 (57%), Positives = 127/182 (69%), Gaps = 10/182 (5%)

Query: 2   AITCSSSSLICFSS--DFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRV 59
           A+  + +S + F    D   S  NL ++ P     T  +  P +     ++ S K RN V
Sbjct: 6   AVLSTPTSTLPFRCRIDSHPSQPNLLFAPPRPKFNTTNIILPSSV----AADSAKWRNMV 61

Query: 60  SFFSGFST----KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPL 115
           S F GF T      VES K EL++ I+PL+RGAEA+PEDQ RVD+IARKLEA+N +KEPL
Sbjct: 62  SIFQGFLTGGRGNDVESLKVELYETIEPLERGAEATPEDQQRVDKIARKLEAMNSVKEPL 121

Query: 116 KSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQVIIF 175
            S+LLNGKWELLYTTSQS+LQT+RPKFLRPNGKIYQAIN DTLRAQNIETWPF+NQ    
Sbjct: 122 NSDLLNGKWELLYTTSQSILQTQRPKFLRPNGKIYQAINTDTLRAQNIETWPFYNQATAN 181

Query: 176 LV 177
           LV
Sbjct: 182 LV 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073420|gb|ACJ85069.1| unknown [Medicago truncatula] gi|388518147|gb|AFK47135.1| unknown [Medicago truncatula]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/182 (57%), Positives = 127/182 (69%), Gaps = 10/182 (5%)

Query: 2   AITCSSSSLICFSS--DFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRV 59
           A+  + +S + F    D   S  NL ++ P     T  +  P +     ++ S K RN V
Sbjct: 6   AVLSTPTSTLPFRCRIDSHPSQPNLLFAPPRPKFNTTNIILPSSV----AADSAKWRNMV 61

Query: 60  SFFSGFST----KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPL 115
           S F GF T      VES K EL++ I+PL+RGAEA+PEDQ RVD+IARKLEA+N +KEPL
Sbjct: 62  SIFQGFLTGGRGNDVESLKVELYETIEPLERGAEATPEDQQRVDKIARKLEAMNSVKEPL 121

Query: 116 KSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQVIIF 175
            S+LLNGKWELLYTTSQS+LQT+RPKFLRPNGKIYQAI+ DTLRAQNIETWPF+NQ    
Sbjct: 122 NSDLLNGKWELLYTTSQSILQTQRPKFLRPNGKIYQAIDTDTLRAQNIETWPFYNQATAN 181

Query: 176 LV 177
           LV
Sbjct: 182 LV 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070527|ref|XP_002303164.1| predicted protein [Populus trichocarpa] gi|222840596|gb|EEE78143.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 105/124 (84%), Gaps = 2/124 (1%)

Query: 56  RNRVSFFSGFS--TKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKE 113
           R  VSFF  FS  +K V+S K++L +AI PLDRGA A+P+DQ RVD+IA++LEAVNDIKE
Sbjct: 37  RTNVSFFQFFSAKSKDVKSLKQQLLEAIAPLDRGAVATPQDQKRVDEIAQELEAVNDIKE 96

Query: 114 PLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQVI 173
           P KSNLLNGKWELLYTTSQS+L+TKRPKFLR NGKIYQAIN DTLRAQN+ETWPFFNQ  
Sbjct: 97  PFKSNLLNGKWELLYTTSQSILKTKRPKFLRSNGKIYQAINADTLRAQNMETWPFFNQAT 156

Query: 174 IFLV 177
             LV
Sbjct: 157 ANLV 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89355891|gb|ABD72269.1| plastid fibrillin 3 [Coffea canephora]

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 96/108 (88%)

Query: 70  VESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYT 129
           +E+ K+EL +AI PLDRGAEA+ EDQ RVDQIARKLEAVN +KEPLKS+LLNGKWELLYT
Sbjct: 2   IETLKQELLEAIAPLDRGAEATAEDQERVDQIARKLEAVNKVKEPLKSSLLNGKWELLYT 61

Query: 130 TSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQVIIFLV 177
           TS+S+LQ +RPK LRPNGK+YQAIN+DTLRAQN+ETWPFFNQ    LV
Sbjct: 62  TSKSVLQPQRPKLLRPNGKVYQAINVDTLRAQNMETWPFFNQATANLV 109

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575408|ref|XP_002528606.1| structural molecule, putative [Ricinus communis] gi|223531951|gb|EEF33764.1| structural molecule, putative [Ricinus communis]

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/184 (54%), Positives = 125/184 (67%), Gaps = 13/184 (7%)

Query: 1   MAITCSSSSLICFSSDFASSSLN------LFYSKPNIII----RTHLLFCPRNQKPLNSS 50
           MA++ SSS  I  +S F+++  N       FY     I     +T  L    +    NS+
Sbjct: 10  MALSSSSSPAILTASHFSTNPPNPKLTTTTFYFSSRFITANYSKTSFLNLNSSNNDNNST 69

Query: 51  VSDKRRNRVSFFSGFSTKRVES--FKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAV 108
             DK R +VSFF  F  K+ ++   KEEL  AI  LDRGAEA+PEDQ RVD+IAR+LEAV
Sbjct: 70  FDDKWRAKVSFFPAFLRKKKDANVLKEELLDAIASLDRGAEATPEDQQRVDEIARQLEAV 129

Query: 109 NDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPF 168
           N  K+PLKS+L+NGKWEL+YTTSQS+LQT+RPKFLR     YQAIN+DTLRAQN+E+WPF
Sbjct: 130 NPTKQPLKSDLINGKWELIYTTSQSILQTQRPKFLRSKTN-YQAINVDTLRAQNMESWPF 188

Query: 169 FNQV 172
           FNQV
Sbjct: 189 FNQV 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449595|ref|XP_004142550.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Cucumis sativus] gi|449479703|ref|XP_004155682.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Cucumis sativus]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/131 (67%), Positives = 105/131 (80%), Gaps = 7/131 (5%)

Query: 47  LNSSVSDKRRNRVSFFSGFSTK----RVESFKEELFQAIKPLDRGAEASPEDQARVDQIA 102
           L SS S K R R+SFF  F  K     V + K+EL QAI+PLDRGAEA+PEDQ  VDQI+
Sbjct: 45  LTSSPSHKWRLRISFFPAFLNKGKGNNVTALKQELLQAIEPLDRGAEATPEDQEMVDQIS 104

Query: 103 RKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKI-YQAINIDTLRAQ 161
           RKLEAVN  KEPLKS+LLNGKWEL+YTTS+S+LQT+RPKFLR   K+ YQ IN+D+LRAQ
Sbjct: 105 RKLEAVNPTKEPLKSDLLNGKWELIYTTSRSILQTERPKFLR--SKLNYQGINVDSLRAQ 162

Query: 162 NIETWPFFNQV 172
           N+E+WPFFNQV
Sbjct: 163 NMESWPFFNQV 173

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2092150	242	AT3G26070 [Arabidopsis thalian	0.668	0.491	0.527	7.1e-29
TAIR|locus:2092165	234	AT3G26080 [Arabidopsis thalian	0.707	0.538	0.492	2.8e-27

TAIR|locus:2092150 AT3G26070 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 68/129 (52%), Positives = 87/129 (67%)

Query:    53 DKRRNRV----SFFSGFSTK--RVES---FKEELFQAIKPLDRGAEASPEDQARVDQIAR 103
             D+ R RV    SF   F T+  R E     K+EL +AI+PL+RGA ASP+DQ R+DQ+AR
Sbjct:    45 DRERLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLAR 104

Query:   104 KLEAVNDIKEPLKSNLLNGKWEXXXXXXXXXXXXKRPKFLRPNGKIYQAINIDTLRAQNI 163
             K+EAVN  KEPLKS+L+NGKWE            K+P+FLR     YQ+IN+DTL+ QN+
Sbjct:   105 KVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITN-YQSINVDTLKVQNM 163

Query:   164 ETWPFFNQV 172
             ETWPF+N V
Sbjct:   164 ETWPFYNSV 172

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2092165 AT3G26080 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 66/134 (49%), Positives = 87/134 (64%)

Query:    45 KPLNSSVSDKRRNRV-SFFS-----GFSTKRVESFKEELFQAIKPLDRGAEASPEDQARV 98
             K L+    D+ R R+ + FS     G + KR +  K EL +AI+PL+RGA ASP+DQ  +
Sbjct:    32 KLLSIRKGDRERLRIQAVFSFPPRNGGAEKR-KQLKHELVEAIEPLERGATASPDDQLLI 90

Query:    99 DQIARKLEAVNDIKEPLKSNLLNGKWEXXXXXXXXXXXXKRPKFLRPNGKIYQAINIDTL 158
             DQ+ARK+EAVN  KEPLKS+L+NGKWE            K+P+FLR     YQ IN+DTL
Sbjct:    91 DQLARKVEAVNPTKEPLKSDLINGKWELIYTTSAAILQAKKPRFLRSLTN-YQCINMDTL 149

Query:   159 RAQNIETWPFFNQV 172
             + Q +ETWPF+N V
Sbjct:   150 KVQRMETWPFYNSV 163


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      178       146   0.00079  103 3  11 22  0.43    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  132 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  16.10u 0.07s 16.17t   Elapsed:  00:00:10
  Total cpu time:  16.11u 0.07s 16.18t   Elapsed:  00:00:11
  Start:  Fri May 10 23:01:50 2013   End:  Fri May 10 23:02:01 2013

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	4e-22

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score = 87.9 bits (218), Expect = 4e-22
 Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 71  ESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELLYT 129
           E  K +L  AI   +RG  AS +D+A ++    +LEA+N    P +S +LLNGKW LLYT
Sbjct: 1   ERLKRKLLDAIYGTNRGLRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYT 60

Query: 130 TSQ---SLLQTKRPKFLRPNGKIYQAINIDTLRAQNIET 165
           TS+    LL   R   L+  G+IYQ I+++ L   N  T
Sbjct: 61  TSKELLPLLARGRLPLLKV-GQIYQTIDVNNLTVYNSVT 98

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	99.94
TIGR02116	80	toxin_Txe_YoeB toxin-antitoxin system, toxin compo	81.58

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=99.94  E-value=1.6e-26  Score=187.17  Aligned_cols=99  Identities=36%  Similarity=0.614  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCcC-CCCCceEEEEEecccccccc---cCCCCcccc
Q 030383           71 ESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELLYTTSQSLLQT---KRPKFLRPN  146 (178)
Q Consensus        71 ~~lK~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEalNPt~~P~~s-~lL~G~W~LvYTTs~~il~~---~rp~~l~~v  146 (178)
                      +++|++||+++++++||+.+++++|++|+++|++||++||+++|+++ ++|+|+|+|+|||+.++.+.   +++++ ..+
T Consensus         1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~-~~~   79 (198)
T PF04755_consen    1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPG-VRV   79 (198)
T ss_pred             ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccc-ccc
Confidence            47899999999999999999999999999999999999999999998 99999999999999999954   45544 469


Q ss_pred             cceEEEEECCCCeeEEEEecccch
Q 030383          147 GKIYQAINIDTLRAQNIETWPFFN  170 (178)
Q Consensus       147 G~I~Q~ID~~~~~v~N~v~fpf~n  170 (178)
                      |+|||+||.+++++.|+|+|..|+
T Consensus        80 ~~v~Q~id~~~~~~~N~v~~~~~~  103 (198)
T PF04755_consen   80 GRVFQTIDADNGRVENVVELSGFP  103 (198)
T ss_pred             cceEEEEECCCceEEEEEEEeccC
Confidence            999999999999999999976655

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family

Probab=81.58  E-value=4.1  Score=28.67  Aligned_cols=20  Identities=5%  Similarity=0.310  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCC
Q 030383           92 PEDQARVDQIARKLEAVNDIK  112 (178)
Q Consensus        92 ~~~r~~IeelI~qLEalNPt~  112 (178)
                      ++.+++|.++|.+|+ .||.+
T Consensus        17 ~~~~~~i~~~i~~l~-~~P~~   36 (80)
T TIGR02116        17 KKLKKKINELIKDVR-RDPFK   36 (80)
T ss_pred             HHHHHHHHHHHHHHH-cCCCC
Confidence            578899999999887 56653

The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00