Citrus Sinensis ID: 030572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEVEANI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEccccccccEcccccccccccEEEEccccccEEccccccEEEEEcccccEEEEEEEEcccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccEEEcc
Coil and Loop (DISEMBL)
mtavsnslvlpknprvelssgsflkpldlclgsntpanlsfspnhqwkvqlsssrrrpfkvhasnseggransagffVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSaqlrtedddapngvavnsgeveani
Flexible Loop (DISEMBL)
mtavsnslvlpknprveLSSGSFLKPLDLCLGSNtpanlsfspnHQWKVQLSSSRRRPFKVhasnseggranSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLrtedddapngvavnsgeveani
Low Complexity Region (SEG)
MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAgffvggfvlggiivgtlgCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEVEANI
Disordered region (IsUnstruct)
**********************FLKPLDLCLG*****************************************AGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQL*********************************
Disordered Region (DISOPRED)
****************************************************************************FVGGFVLGGIIVGTLGCVYAP************************************ILTEKIAQLNSAIDD***************************
Disordered Region (DISEMBL)
MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEVEANI
Disordered Region (DISPRO)
***********KNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLR********GVAVNSGE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDExxxxxxxxxxxxxxxxxxxxxxxxxxxxLRTEDDDAPNGVAVNSGEVEANI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
225457608	171	PREDICTED: uncharacterized protein LOC10	0.948	0.970	0.661	9e-56
255539284	166	conserved hypothetical protein [Ricinus	0.937	0.987	0.683	2e-52
225438434	162	PREDICTED: uncharacterized protein LOC10	0.908	0.981	0.629	7e-48
351725087	163	uncharacterized protein LOC100306344 [Gl	0.851	0.914	0.662	1e-47
449455633	169	PREDICTED: uncharacterized protein LOC10	0.965	1.0	0.594	4e-47
224094252	164	predicted protein [Populus trichocarpa]	0.931	0.993	0.590	3e-46
388518649	165	unknown [Lotus japonicus]	0.914	0.969	0.619	6e-46
356517227	163	PREDICTED: uncharacterized protein LOC10	0.92	0.987	0.595	1e-45
296082567	173	unnamed protein product [Vitis vinifera]	0.908	0.919	0.592	2e-45
388514427	139	unknown [Lotus japonicus]	0.765	0.964	0.702	3e-45

>gi|225457608|ref|XP_002273917.1| PREDICTED: uncharacterized protein LOC100242710 [Vitis vinifera] gi|297745580|emb|CBI40745.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (563), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 119/180 (66%), Positives = 136/180 (75%), Gaps = 14/180 (7%)

Query: 1   MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFK 60
           M A SNSLV         SSG+ LKP+D  LGS  P NLSF+PNH  KVQ  +S+R    
Sbjct: 1   MAAFSNSLV-------HFSSGACLKPVDRYLGSLGPTNLSFNPNHVGKVQFFTSKRALTV 53

Query: 61  VHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKF 120
             A + +GG+ ++A FF+GGFVLGG+IVGTLGCVYAPQISKALAG  ADRKDLMRKLPKF
Sbjct: 54  QAAYSDDGGKQSNANFFLGGFVLGGLIVGTLGCVYAPQISKALAG--ADRKDLMRKLPKF 111

Query: 121 IYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTED-----DDAPNGVAVNSGEVEANI 175
           IYDEEKALEKTRKIL +KI QLNSAIDDVS+QLR+ED     DDAPNG  +NS E+EA I
Sbjct: 112 IYDEEKALEKTRKILAQKIDQLNSAIDDVSSQLRSEDSPDEADDAPNGATINSDEMEAAI 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539284|ref|XP_002510707.1| conserved hypothetical protein [Ricinus communis] gi|223551408|gb|EEF52894.1| conserved hypothetical protein [Ricinus communis]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/177 (68%), Positives = 136/177 (76%), Gaps = 13/177 (7%)

Query: 1   MTAVSNSLVLPKNP--RVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRP 58
           MTA+SNSL L +NP   V+LS+GS  K L     +  P  LSFS N   KVQL++SRR  
Sbjct: 1   MTAISNSLALTRNPVGTVQLSAGSLGKSLQ----NVGPTKLSFSLNSPGKVQLTTSRR-S 55

Query: 59  FKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLP 118
             V A+ S+ GR +S   FVGGFVLGG+IVG LGCVYAPQISKALAG   DRKDLMRKLP
Sbjct: 56  LTVRAA-SDDGRPSSGSIFVGGFVLGGLIVGALGCVYAPQISKALAGT--DRKDLMRKLP 112

Query: 119 KFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEVEANI 175
           KFIYDEEKALEKTRK+LTEKIAQLNSAIDDVSAQLR+  DD+PNGVAVN  E+EA I
Sbjct: 113 KFIYDEEKALEKTRKVLTEKIAQLNSAIDDVSAQLRS--DDSPNGVAVND-EIEAAI 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438434|ref|XP_002276709.1| PREDICTED: uncharacterized protein LOC100250729 [Vitis vinifera]

 Score =  195 bits (495), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 125/178 (70%), Gaps = 19/178 (10%)

Query: 1   MTAVSNSLVLPKNPRVELSSGSFLKPLD---LCLGSNTPANLSFSPNHQWKVQLSSSRRR 57
           M+A SN LV  +NPR +   GS LK +D   L L S +  N     N             
Sbjct: 1   MSAFSNPLVSIRNPRTQFLYGSSLKLVDQSNLSLCSTSAGNTKHLANKSL---------- 50

Query: 58  PFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKL 117
              + A+  +GGR +SA  FVGGF+LGGI+VGTLGCVYAPQISKALAGA  DRKDLMRKL
Sbjct: 51  -LTIRAAG-DGGRPSSASIFVGGFILGGIVVGTLGCVYAPQISKALAGA--DRKDLMRKL 106

Query: 118 PKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEVEANI 175
           PKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLR   DDAPNG AVN  E+EA+I
Sbjct: 107 PKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRA--DDAPNGSAVNPDEIEASI 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725087|ref|NP_001237336.1| uncharacterized protein LOC100306344 [Glycine max] gi|255628263|gb|ACU14476.1| unknown [Glycine max]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/154 (66%), Positives = 119/154 (77%), Gaps = 5/154 (3%)

Query: 20  SGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAGFFVG 79
           S S +  +D  L    P N S + N Q  +Q +S  RRP  + A+ S+GGR +SA  FVG
Sbjct: 13  SASSINKVDHSLVKIKPYNFSLNLNRQGTMQ-TSLTRRPLTIQATYSDGGRPSSASVFVG 71

Query: 80  GFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKI 139
           GF+LGG+IVGTLGCVYAPQISKALAGA  DRK+LMRKLPKFIYDEEKALEKTRK+L EKI
Sbjct: 72  GFLLGGLIVGTLGCVYAPQISKALAGA--DRKELMRKLPKFIYDEEKALEKTRKVLAEKI 129

Query: 140 AQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEVEA 173
            QLN+AIDDVSAQLR+E  +A NGVAVNS E+EA
Sbjct: 130 EQLNAAIDDVSAQLRSE--EASNGVAVNSDEIEA 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455633|ref|XP_004145557.1| PREDICTED: uncharacterized protein LOC101206784 [Cucumis sativus] gi|449485109|ref|XP_004157072.1| PREDICTED: uncharacterized LOC101206784 [Cucumis sativus]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 132/175 (75%), Gaps = 6/175 (3%)

Query: 1   MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFK 60
           M A+SNSLVL K+P+++L+ GS LK +D  LGS +P +L  SP      +LS+SRR    
Sbjct: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRR-SLS 59

Query: 61  VHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKF 120
           V A+  + GR+ S G F+GGFVLGG+IVGTLGCVYAPQISK +AG   DRK+LM+KLPKF
Sbjct: 60  VQAAYRDDGRS-STGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGT--DRKELMKKLPKF 116

Query: 121 IYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEVEANI 175
           IYDEEKALEKTRK+L  KI QLNSAID+V+A+ R+E     NG+A++S EVE+ I
Sbjct: 117 IYDEEKALEKTRKMLALKIEQLNSAIDEVAAEYRSE--SPTNGLAMDSDEVESII 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094252|ref|XP_002310110.1| predicted protein [Populus trichocarpa] gi|222853013|gb|EEE90560.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/176 (59%), Positives = 125/176 (71%), Gaps = 13/176 (7%)

Query: 1   MTAVSNSLVLPKNPRVELSS-GSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPF 59
           MTA+S SL+    P+   SS GS LKP D CL    P NLS            ++ ++  
Sbjct: 1   MTALSTSLLSITTPQAHFSSAGSSLKPKDQCLICVRPGNLSSKGK-------PTTHKKSL 53

Query: 60  KVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPK 119
            + AS   GG ++ AG F+GGF+LGG++ GTLGCVYAPQISKALAGA  DRKDLMRKLPK
Sbjct: 54  TIQASGERGG-SSGAGIFIGGFILGGMVAGTLGCVYAPQISKALAGA--DRKDLMRKLPK 110

Query: 120 FIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEVEANI 175
           FIYDEEKALEKTR++L +KIAQLNSAID+VSAQL  E  DAPNG AV S E++A+I
Sbjct: 111 FIYDEEKALEKTRQVLADKIAQLNSAIDEVSAQLHPE--DAPNGTAVASDEIQASI 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518649|gb|AFK47386.1| unknown [Lotus japonicus]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 106/171 (61%), Positives = 127/171 (74%), Gaps = 11/171 (6%)

Query: 3   AVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVH 62
           AVS+S +L K       S S +  +D       P+ LS + N Q + QLS +RR P  V 
Sbjct: 4   AVSSSFILTK-------SVSSINKVDHSRVMIKPSGLSQNLNCQGRTQLSLTRR-PLTVQ 55

Query: 63  ASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIY 122
           A+ S+GGR + A  FVGGFVLGG+IVGTLG VYAPQISKALAGA  D+K+LMRKLPKFIY
Sbjct: 56  ATYSDGGRPSGASVFVGGFVLGGLIVGTLGAVYAPQISKALAGA--DKKELMRKLPKFIY 113

Query: 123 DEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEVEA 173
           DEEKALEKTRK+L EKI QLN+AID+VS+QLR+E D+ PNGVAVNS E+EA
Sbjct: 114 DEEKALEKTRKVLAEKIEQLNAAIDEVSSQLRSE-DEGPNGVAVNSDELEA 163

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517227|ref|XP_003527290.1| PREDICTED: uncharacterized protein LOC100527765 [Glycine max]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/173 (59%), Positives = 125/173 (72%), Gaps = 12/173 (6%)

Query: 1   MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFK 60
           M AV ++  L K       S   +  LD  L    P + S + N   +++ +S  RRP  
Sbjct: 1   MAAVPSTFALTK-------SALSINKLDHSLVKIKPYSFSLNLNRLGRME-TSLTRRPLT 52

Query: 61  VHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKF 120
           + A+ S+GGR +SA  FVGGF+LGG+IVGTLGCVYAPQISKA+AGA  DRK+LMRKLPKF
Sbjct: 53  IQATYSDGGRPSSASVFVGGFLLGGLIVGTLGCVYAPQISKAIAGA--DRKELMRKLPKF 110

Query: 121 IYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEVEA 173
           IYDEEKALEKTRK+L EKI QLN+AIDDVSAQLR+E  +A NGVAVNS E+EA
Sbjct: 111 IYDEEKALEKTRKVLAEKIEQLNAAIDDVSAQLRSE--EASNGVAVNSDEIEA 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082567|emb|CBI21572.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 125/189 (66%), Gaps = 30/189 (15%)

Query: 1   MTAVSNSLVLPKNPRVELSSGSFLKPLD---LCLGSNTPANLSFSPNHQWKVQLSSSRRR 57
           M+A SN LV  +NPR +   GS LK +D   L L S +  N     N             
Sbjct: 1   MSAFSNPLVSIRNPRTQFLYGSSLKLVDQSNLSLCSTSAGNTKHLANKSL---------- 50

Query: 58  PFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQ-----------ISKALAGA 106
              + A+  +GGR +SA  FVGGF+LGGI+VGTLGCVYAPQ           ISKALAGA
Sbjct: 51  -LTIRAAG-DGGRPSSASIFVGGFILGGIVVGTLGCVYAPQAIQIITCLTNQISKALAGA 108

Query: 107 AADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNGVAV 166
             DRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLR   DDAPNG AV
Sbjct: 109 --DRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRA--DDAPNGSAV 164

Query: 167 NSGEVEANI 175
           N  E+EA+I
Sbjct: 165 NPDEIEASI 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514427|gb|AFK45275.1| unknown [Lotus japonicus]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/138 (70%), Positives = 114/138 (82%), Gaps = 4/138 (2%)

Query: 36  PANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVY 95
           P+ LS + N Q + QLS +RR P  V A+ S+GGR + A  FVGGFVLGG+IVGTLG VY
Sbjct: 4   PSGLSQNLNCQGRTQLSLTRR-PLTVQATYSDGGRPSGASVFVGGFVLGGLIVGTLGAVY 62

Query: 96  APQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRT 155
           APQISKALAGA  D+K+LMRKLPKFIYDEEKALEKTRK+L EKI QLN+AID+VS+QLR+
Sbjct: 63  APQISKALAGA--DKKELMRKLPKFIYDEEKALEKTRKVLAEKIEQLNAAIDEVSSQLRS 120

Query: 156 EDDDAPNGVAVNSGEVEA 173
           E D+ PNGVAVNS E+EA
Sbjct: 121 E-DEGPNGVAVNSDELEA 137

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
TAIR|locus:2009859	168	AT1G42960 "AT1G42960" [Arabido	0.908	0.946	0.502	1.1e-32
TAIR|locus:2174185	168	AT5G16660 "AT5G16660" [Arabido	0.794	0.827	0.331	3.5e-11
TAIR|locus:2075462	162	AT3G02900 "AT3G02900" [Arabido	0.582	0.629	0.301	6.1e-07

TAIR|locus:2009859 AT1G42960 "AT1G42960" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 86/171 (50%), Positives = 109/171 (63%)

Query:     5 SNSLVLPKNP-RVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSR-RRPFKVH 62
             S SL LPKN  ++  SSG  L P   C+      ++SF  NH  K+ +S+ R +R   + 
Sbjct:     6 STSLSLPKNSHQLHPSSGFSLNPNARCV------SVSFGLNHSNKLHISAPRTKRILTIQ 59

Query:    63 ASNSEGGRANSAXXXXXXXXXXXXXXXXXXCVYAPQISKALAGAAADRKDLMRKLPKFIY 122
             ++  +   + S                   CVYAPQISKA+AGA  DRKDLMRKLPKFIY
Sbjct:    60 SAYRDDDGSGSTGLFVGGFILGGLIVGALGCVYAPQISKAIAGA--DRKDLMRKLPKFIY 117

Query:   123 DEEKALEKTRKILTEKIAQLNSAIDDVSAQLRTEDDDAPNGVAVNSGEVEA 173
             DEEKALEKTRK+L EKIAQLNSAIDDVS+QL++ED   PNG A+++ E+EA
Sbjct:   118 DEEKALEKTRKVLAEKIAQLNSAIDDVSSQLKSED--TPNGAALSTDEIEA 166

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2174185 AT5G16660 "AT5G16660" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 48/145 (33%), Positives = 69/145 (47%)

Query:    32 GSNTPANLS-FSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAXXXXXXXXXXXXXXXX 90
             G +T   LS         +   S+R R F V A   +G R+ S+                
Sbjct:    25 GLSTTTKLSSICKTSDLTIHKKSNRTRKFSVSAGYRDGSRSGSSGDFIAGFLLGGAVFGA 84

Query:    91 XXCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVS 150
                ++APQI +++     +      K P + YDE   LEKTR+ L EKI QLNSAID+VS
Sbjct:    85 VAYIFAPQIRRSVLNEEDEYGFEKPKQPTY-YDE--GLEKTRETLNEKIGQLNSAIDNVS 141

Query:   151 AQLRTEDDDAPN-GVAVNSG-EVEA 173
             ++LR  + +  +  V V +  EVEA
Sbjct:   142 SRLRGREKNTSSLNVPVETDPEVEA 166

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2075462 AT3G02900 "AT3G02900" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 32/106 (30%), Positives = 48/106 (45%)

Query:    49 VQLSSSRRRPFKVHASNSEGGRANSAXXXXXXXXXXXXXXXXXXCVYAPQISKALAGAAA 108
             VQ  S+R     V A    G +   +                   ++APQI +++   + 
Sbjct:    34 VQTKSNRSHKLSVSAGYRGGSKGGGSSDFVTGFLLGSAVFGTLAYIFAPQIRRSVL--SE 91

Query:   109 DRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLR 154
             +     +      YDE   LE+ R+IL EKI QLNSAID VS++L+
Sbjct:    92 NEYGFKKPEQPMYYDE--GLEERREILNEKIGQLNSAIDKVSSRLK 135


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.126   0.350    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      175       157   0.00079  106 3  11 23  0.42    32
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  128 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.03u 0.11s 15.14t   Elapsed:  00:00:01
  Total cpu time:  15.03u 0.11s 15.14t   Elapsed:  00:00:01
  Start:  Sat May 11 06:05:14 2013   End:  Sat May 11 06:05:15 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
COG4980	115	GvpP Gas vesicle protein [General function predict	99.14
PF12732	74	YtxH: YtxH-like protein; InterPro: IPR024623 This	99.1
PF12732	74	YtxH: YtxH-like protein; InterPro: IPR024623 This	95.3
TIGR03789	239	pdsO proteobacterial sortase system OmpA family pr	93.65
PF06295	128	DUF1043: Protein of unknown function (DUF1043); In	92.68
COG4980	115	GvpP Gas vesicle protein [General function predict	91.99
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	90.22
PF06295	128	DUF1043: Protein of unknown function (DUF1043); In	89.89
PRK11677	134	hypothetical protein; Provisional	89.71
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	82.31
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	80.45
TIGR03789	239	pdsO proteobacterial sortase system OmpA family pr	80.29

>COG4980 GvpP Gas vesicle protein [General function prediction only]

Probab=99.14  E-value=1.5e-10  Score=90.58  Aligned_cols=73  Identities=21%  Similarity=0.330  Sum_probs=58.1

Q ss_pred             ccchhhhHHHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHhhCCCcchh--------HHHHHHHHHHhHHHHHHHHHH
Q 030572           73 SAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYD--------EEKALEKTRKILTEKIAQLNS  144 (175)
Q Consensus        73 f~ggFl~G~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~~~p~~~~d--------ee~~iE~arr~Le~kIaqLN~  144 (175)
                      .++.||.|+++||+||++.++||||++|+++|..+   ++..++++...++        .++.....-+.|.+.-.|+++
T Consensus         3 ~~~~~l~G~liGgiiGa~aaLL~AP~sGkelR~~~---K~~~~~~~~~ae~~~~~~~~~a~~~s~~~a~~~~~~~~~ik~   79 (115)
T COG4980           3 KGKDFLFGILIGGIIGAAAALLFAPKSGKELRKKL---KKSGDALFELAEDKGTDILMIADKLSKESAETLKDQGGEIKE   79 (115)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence            46899999999999999999999999999999877   6667777766654        445566666677777777777


Q ss_pred             HHHH
Q 030572          145 AIDD  148 (175)
Q Consensus       145 AIdd  148 (175)
                      +|.+
T Consensus        80 ~v~~   83 (115)
T COG4980          80 SVKK   83 (115)
T ss_pred             HHHH
Confidence            6665

>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria

Probab=99.10  E-value=3.5e-10  Score=79.93  Aligned_cols=59  Identities=20%  Similarity=0.323  Sum_probs=42.3

Q ss_pred             hhhHHHHHHHHHHHhHHhhcccchHHHHhhhhhhHHHHhhCCCcchhHHHHHHHHHHhHHHHHHH
Q 030572           77 FVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQ  141 (175)
Q Consensus        77 Fl~G~llGGaVGGvlGlL~APR~~kel~~~l~d~k~~~~~~p~~~~dee~~iE~arr~Le~kIaq  141 (175)
                      |+.||++|+++|+++|+|+||+.|+++|+-+      .+...++.+...+..+.+++++.+++.+
T Consensus         1 F~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l------~~~~~~~~~~~~~~~~~~~~~~k~~~~~   59 (74)
T PF12732_consen    1 FLLGFLAGAAAGAAAGLLFAPKSGKETREKL------KDKAEDLKDKAKDLYEEAKEKVKEKAEE   59 (74)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999998854      2222333344444555555555555555

Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.

>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria

Probab=95.30  E-value=0.05  Score=38.36  Aligned_cols=35  Identities=14%  Similarity=-0.012  Sum_probs=17.8

Q ss_pred             ccchhhhHHHHHHHHHHHhHHhhcccchHHHHhhh
Q 030572           73 SAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAA  107 (175)
Q Consensus        73 f~ggFl~G~llGGaVGGvlGlL~APR~~kel~~~l  107 (175)
                      |-.||++|+++|.++|-++.===..+..+.+....
T Consensus         1 F~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~   35 (74)
T PF12732_consen    1 FLLGFLAGAAAGAAAGLLFAPKSGKETREKLKDKA   35 (74)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence            33455566666655555554444444444444433

Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.

>TIGR03789 pdsO proteobacterial sortase system OmpA family protein

Probab=93.65  E-value=0.13  Score=44.45  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=18.5

Q ss_pred             CccchhhhHHHHHHHHHHHhHHhhcccchHHH
Q 030572           72 NSAGFFVGGFVLGGIIVGTLGCVYAPQISKAL  103 (175)
Q Consensus        72 Gf~ggFl~G~llGGaVGGvlGlL~APR~~kel  103 (175)
                      |++.|.++|.++||.||+++|.++.-=++...
T Consensus        46 g~~~ga~~g~~~gg~~G~~~G~~~G~~~g~~~   77 (239)
T TIGR03789        46 GLGSGALLGALVGGPVGAIIGGITGGLIGQAV   77 (239)
T ss_pred             hHHHHHHHhhhhccHHHHHHHHHHHHHhhhhc
Confidence            55556666666666666666655555555443

A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.

>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=92.68  E-value=0.65  Score=36.30  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=19.2

Q ss_pred             hhHHHHHHHHHHHhHHhhcccch
Q 030572           78 VGGFVLGGIIVGTLGCVYAPQIS  100 (175)
Q Consensus        78 l~G~llGGaVGGvlGlL~APR~~  100 (175)
                      ++||++|.+||.+++-++.+...
T Consensus         3 ~i~lvvG~iiG~~~~r~~~~~~~   25 (128)
T PF06295_consen    3 IIGLVVGLIIGFLIGRLTSSNQQ   25 (128)
T ss_pred             HHHHHHHHHHHHHHHHHhccchh
Confidence            67899999999999888887754

>COG4980 GvpP Gas vesicle protein [General function prediction only]

Probab=91.99  E-value=0.45  Score=37.63  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHhHHhhcccchHHH
Q 030572           80 GFVLGGIIVGTLGCVYAPQISKAL  103 (175)
Q Consensus        80 G~llGGaVGGvlGlL~APR~~kel  103 (175)
                      .||+|.+|||++|.+.|=-.....
T Consensus         6 ~~l~G~liGgiiGa~aaLL~AP~s   29 (115)
T COG4980           6 DFLFGILIGGIIGAAAALLFAPKS   29 (115)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCcc
Confidence            588888888888888765555443

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=90.22  E-value=0.21  Score=43.24  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=21.0

Q ss_pred             hhhhHHHHHHHHHHHhHHhhcccchH
Q 030572           76 FFVGGFVLGGIIVGTLGCVYAPQISK  101 (175)
Q Consensus        76 gFl~G~llGGaVGGvlGlL~APR~~k  101 (175)
                      |++.||++||.+|+++|+++.--..+
T Consensus         9 g~~~G~~~~g~~Ga~~G~~~Gh~~d~   34 (267)
T PRK09430          9 GFAFGFLFGGFFGALLGLLIGHMFDK   34 (267)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhHHhh
Confidence            67788888999999988888776655

>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=89.89  E-value=0.68  Score=36.19  Aligned_cols=25  Identities=12%  Similarity=0.134  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHhHHhhcccchHHHHh
Q 030572           81 FVLGGIIVGTLGCVYAPQISKALAG  105 (175)
Q Consensus        81 ~llGGaVGGvlGlL~APR~~kel~~  105 (175)
                      +++|-+||.+||+++..-..+..+.
T Consensus         2 ~~i~lvvG~iiG~~~~r~~~~~~~~   26 (128)
T PF06295_consen    2 AIIGLVVGLIIGFLIGRLTSSNQQK   26 (128)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchhh
Confidence            5789999999999987777766543

>PRK11677 hypothetical protein; Provisional

Probab=89.71  E-value=2.2  Score=34.35  Aligned_cols=23  Identities=22%  Similarity=0.124  Sum_probs=19.2

Q ss_pred             hhhHHHHHHHHHHHhHHhhcccc
Q 030572           77 FVGGFVLGGIIVGTLGCVYAPQI   99 (175)
Q Consensus        77 Fl~G~llGGaVGGvlGlL~APR~   99 (175)
                      .++||++|.+||.+++-+..+..
T Consensus         6 a~i~livG~iiG~~~~R~~~~~~   28 (134)
T PRK11677          6 ALIGLVVGIIIGAVAMRFGNRKL   28 (134)
T ss_pred             HHHHHHHHHHHHHHHHhhccchh
Confidence            46889999999999998888775

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=82.31  E-value=9.7  Score=27.28  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=12.7

Q ss_pred             HHhhCCCcchhHHHHHHHHHHhHH
Q 030572          113 LMRKLPKFIYDEEKALEKTRKILT  136 (175)
Q Consensus       113 ~~~~~p~~~~dee~~iE~arr~Le  136 (175)
                      ..+...+...+.++.++.+++-++
T Consensus        38 l~~~~~~i~~e~~~ll~~~n~l~~   61 (90)
T PF06103_consen   38 LQEQVDPITKEINDLLHNTNELLE   61 (90)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555556666665544

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=80.45  E-value=4.3  Score=27.37  Aligned_cols=28  Identities=14%  Similarity=0.275  Sum_probs=14.6

Q ss_pred             hhhhHHHHHHHHHHHhHHhhcccchHHH
Q 030572           76 FFVGGFVLGGIIVGTLGCVYAPQISKAL  103 (175)
Q Consensus        76 gFl~G~llGGaVGGvlGlL~APR~~kel  103 (175)
                      -+++-|++|.++|.++++.-.=|..++.
T Consensus        23 ~il~~f~~G~llg~l~~~~~~~~~r~~~   50 (68)
T PF06305_consen   23 LILIAFLLGALLGWLLSLPSRLRLRRRI   50 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666666655555444444444

>TIGR03789 pdsO proteobacterial sortase system OmpA family protein

Probab=80.29  E-value=3.4  Score=35.90  Aligned_cols=22  Identities=9%  Similarity=0.152  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhccc
Q 030572          135 LTEKIAQLNSAIDDVSAQLRTE  156 (175)
Q Consensus       135 Le~kIaqLN~AIddvr~QL~~~  156 (175)
                      ++....+....++++.++..+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~  127 (239)
T TIGR03789       106 LEAEYQQAQVHLETLQQDQQQL  127 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555566655444443

A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
3ldt_A	169	Outer membrane protein, OMPA family protein; OMPA-	82.27
3ra3_A	28	P1C; coiled coil domain, fiber, KIH interactions,	80.47

>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}

Probab=82.27  E-value=0.49  Score=36.71  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=6.5

Q ss_pred             hhHHHHHHHHHHHhHHhhcccchHH
Q 030572           78 VGGFVLGGIIVGTLGCVYAPQISKA  102 (175)
Q Consensus        78 l~G~llGGaVGGvlGlL~APR~~ke  102 (175)
                      |.|+++|++||+++|.++.-...+.
T Consensus         3 ~~ga~~ga~~g~~~g~~ig~~~d~q   27 (169)
T 3ldt_A            3 LSGTLIGAAAGGTVGLVASIYRDSK   27 (169)
T ss_dssp             --------------CCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777777777777766555444

>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=80.47  E-value=2.4  Score=25.22  Aligned_cols=24  Identities=38%  Similarity=0.450  Sum_probs=19.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHH
Q 030572          127 ALEKTRKILTEKIAQLNSAIDDVS  150 (175)
Q Consensus       127 ~iE~arr~Le~kIaqLN~AIddvr  150 (175)
                      .+|-...-||+||+-|++.|+...
T Consensus         4 alefendaleqkiaalkqkiaslk   27 (28)
T 3ra3_A            4 ALEFENDALEQKIAALKQKIASLK   27 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhccHHHHHHHHHHHHHHHHhc
Confidence            356667789999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00