Citrus Sinensis ID: 030650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MVVAISEENPRTRKPKGRFVSSRYLSPSPSSSSSLTTATTTAKSQSQSQRFSSLLVSRSINSSNLPALGTKRSQSVDRRRQLSTITRMLITSTRSLSVSFQGETFSLPISKTKAKATPETRRGTPVRDQPWPGRTQQGNPICQGCWILVLRRRLNSMRTPPRTRTKEELKEAYI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccEEccccEEEEEEEccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHEccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHcHHHccccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
mvvaiseenprtrkpkgrfvssrylspspssssslttatttaksqsqsQRFSSLLVSRsinssnlpalgtkrsqsvdrRRQLSTITRMLITSTrslsvsfqgetfslpisktkakatpetrrgtpvrdqpwpgrtqqgnpicqgcWILVLRRRlnsmrtpprtrtkEELKEAYI
Flexible Loop (DISEMBL)
mvvaiseenprtrkpkgrfvssrylspspssssslttatttaksqsqsqRFSSLLVsrsinssnlpalgtkrsqsvdrrrqLSTITRmlitstrslsvsfqgetfslpisktkakatpetrrgtpvrdqpwpgrtqqgnpicqGCWILVLrrrlnsmrtpprtrtkeelkeayi
Low Complexity Region (SEG)
MVVAISEENPRTRKPKGRFVssrylspspssssslttatttaksqsqsqrfssllvsrsinssnlPALGTKRSQSVDRRRQLSTITRMLITSTRSLSVSFQGETFSLPISKTKAKATPETRRGTPVRDQPWPGRTQQGNPICQGCWILVLRRRLNSMRTPPRTRTKEELKEAYI
Disordered region (IsUnstruct)
***************************************************************************************MLI************************************************NPICQGCWILVLRRR*********************
Disordered Region (DISOPRED)
*******************************************************************************************STRSLSVSFQGETF*****************************************ILVLRR*******************AYI
Disordered Region (DISEMBL)
MVVAISEENPRTRKPKGRFVSS********************************LVSRSINSSNLPAL***********RQLSTITRMLITSTRSLSVSFQGETFSLPIS******************QPWPGRTQQGNPICQGCWILVLRRRLNSMRT***************
Disordered Region (DISPRO)
*V***************************************************************************************ITSTRSLSVSFQGETFS*************************************GCWI*V****LN**RTPPRTRTKEELK***I
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVVAISEENPRTRKPKGRFVSSRYLSPSPSSSSSLTTATTTAKSQSQSQRFSSLLVSRSINSSNLPALGTKRSQSVDRRRQLSTITRMLITSTRSLSVSFQGETFSLPISKTKAKATPETRRGTPVRDQPWPGRTQQGNPICQGCWILVLRRRLNSMRTPPRTRTKEELKEAYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
224103731	606	predicted protein [Populus trichocarpa]	0.724	0.207	0.502	9e-20
297830622	645	hypothetical protein ARALYDRAFT_479470 [	0.724	0.195	0.521	2e-19
255573137	634	conserved hypothetical protein [Ricinus	0.775	0.212	0.460	3e-19
225428965	639	PREDICTED: uncharacterized protein LOC10	0.683	0.186	0.449	4e-19
296083065	530	unnamed protein product [Vitis vinifera]	0.683	0.224	0.449	4e-19
147797340	601	hypothetical protein VITISV_014039 [Viti	0.741	0.214	0.435	6e-19
224056236	651	predicted protein [Populus trichocarpa]	0.735	0.196	0.5	6e-19
356574305	625	PREDICTED: uncharacterized protein LOC10	0.804	0.224	0.5	9e-18
356536117	613	PREDICTED: uncharacterized protein LOC10	0.821	0.233	0.497	8e-17
449438327	667	PREDICTED: uncharacterized protein LOC10	0.741	0.193	0.421	2e-16

>gi|224103731|ref|XP_002313172.1| predicted protein [Populus trichocarpa] gi|222849580|gb|EEE87127.1| predicted protein [Populus trichocarpa]

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 108/181 (59%), Gaps = 55/181 (30%)

Query: 13  RKPKGRFVSSRYLSPSPSSSSSLTTATTTAKSQSQS------QRFSSLLVSRSINSS--- 63
           RKP+G+ V SRYLSPSPS+S+S TT TTT  S S S      +RF+S L+SRS NS    
Sbjct: 1   RKPRGKQVPSRYLSPSPSTSTSTTTTTTTTTSSSSSSSSSFPRRFASPLLSRSTNSGPLH 60

Query: 64  --------NLPALGTKRSQSVDRRR-----------------QLSTITRMLITSTRSLSV 98
                   +LP+ G+KRSQSVDRRR                 ++S  T+MLITSTRSLSV
Sbjct: 61  TPLTTTTCSLPS-GSKRSQSVDRRRPVTSSRPTTPNPQRTATEISAATKMLITSTRSLSV 119

Query: 99  SFQGETFSLPISKTKA----------KATPETRRGTPVRDQP----------WPGRTQQG 138
           SFQGE FSLPISK K+          KATPE RR TPVRDQ           WPGR+++G
Sbjct: 120 SFQGEAFSLPISKAKSVTPPQNNVVRKATPERRRATPVRDQGENSRPMDQHRWPGRSREG 179

Query: 139 N 139
           N
Sbjct: 180 N 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830622|ref|XP_002883193.1| hypothetical protein ARALYDRAFT_479470 [Arabidopsis lyrata subsp. lyrata] gi|297329033|gb|EFH59452.1| hypothetical protein ARALYDRAFT_479470 [Arabidopsis lyrata subsp. lyrata]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/163 (52%), Positives = 102/163 (62%), Gaps = 37/163 (22%)

Query: 13  RKPKG-RFVSSRYLSPSPSSSSSLTTATTTAKSQSQ-----SQRFSSLLVSRSINS-SNL 65
           R+P+  + V SRYLSPSPS  S+ TTAT+T+ S S      S+R+ S L+SRS NS SNL
Sbjct: 38  RRPRAAKNVPSRYLSPSPSHPSTTTTATSTSSSSSSAVLRTSKRYPSPLLSRSTNSASNL 97

Query: 66  ---PALGTKRSQSVDRRR---------QLSTITRMLITSTRSLSVSFQGETFSLPISKTK 113
              P+   KRSQSVDRRR         ++S  T+MLITSTRSLSVSFQGE FSLPISK K
Sbjct: 98  VKTPSSLPKRSQSVDRRRPSAVSDTRTEMSAATKMLITSTRSLSVSFQGEAFSLPISKKK 157

Query: 114 A--------KATPETRRGTPVRD----------QPWPGRTQQG 138
                    K+TPE RR TPVRD          Q WPG +++G
Sbjct: 158 ETTTPVSHRKSTPERRRATPVRDQRENSKPVDQQLWPGASRRG 200

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573137|ref|XP_002527498.1| conserved hypothetical protein [Ricinus communis] gi|223533138|gb|EEF34896.1| conserved hypothetical protein [Ricinus communis]

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 110/204 (53%), Gaps = 69/204 (33%)

Query: 1   MVVAISEENPRT---------------------RKPKGRFVSSRYLSPSPSSSSSLTTAT 39
           MV AIS +N +T                     RKP+G+ V SRYLSPSPSSS++ T+ T
Sbjct: 2   MVAAISTDNAKTPNNPRRPPLLPSEKDNAHVQSRKPRGKQVPSRYLSPSPSSSTTTTSTT 61

Query: 40  TTAKSQSQS-----QRFSSLLVSRSINSSNLPALGTKRSQSVDRRR-------------- 80
           TT  S S S     +RF S L+SRS NS + P    KRSQSVDR+R              
Sbjct: 62  TTTSSSSCSSSSVPKRFPSPLLSRSTNSFSTP----KRSQSVDRKRPVVSQRPVTPNPEA 117

Query: 81  ------QLSTITRMLITSTRSLSVSFQGETFSLPISKTKA---------KATPETRRGTP 125
                 ++S  TRMLITSTRSLSVSFQGE FSLPISK KA         K TPE R+ TP
Sbjct: 118 KQGNVSEMSAATRMLITSTRSLSVSFQGEAFSLPISKAKAVSSSPNVTRKVTPERRKSTP 177

Query: 126 VRDQP----------WPGRTQQGN 139
           VRDQ           WPGR++ GN
Sbjct: 178 VRDQGENSRPLDQHRWPGRSRGGN 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428965|ref|XP_002263972.1| PREDICTED: uncharacterized protein LOC100242868 [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 95/169 (56%), Gaps = 50/169 (29%)

Query: 13  RKPKGRFVSSRYLSPSPSSSSSLTTATTTAKSQSQSQRFSSLLVSRSINSSN----LPAL 68
           ++PK R VSSRY+SPSPS+S+S+             +R SS L+SRS NS+     LP  
Sbjct: 47  KRPKSRQVSSRYMSPSPSTSASVP------------RRCSSPLISRSTNSTASSTPLPVA 94

Query: 69  GTK------RSQSVDRRR----------QLSTITRMLITSTRSLSVSFQGETFSLPISKT 112
            +       RS SVDRRR          ++S  +R+L TSTRSLSVSFQGE FSLPISK 
Sbjct: 95  ASSTSSSFPRSHSVDRRRPATAAPGSAGEVSAASRLLFTSTRSLSVSFQGEAFSLPISKA 154

Query: 113 KA--------KATPETRRGTPVR-----DQ-----PWPGRTQQGNPICQ 143
           KA        K TPE R+ TPVR     DQ     PWPGR++  N + +
Sbjct: 155 KAAPNLGNVRKGTPERRKPTPVRGSGAVDQVENSRPWPGRSRSVNVLAR 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083065|emb|CBI22469.3| unnamed protein product [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 95/169 (56%), Gaps = 50/169 (29%)

Query: 13  RKPKGRFVSSRYLSPSPSSSSSLTTATTTAKSQSQSQRFSSLLVSRSINSSN----LPAL 68
           ++PK R VSSRY+SPSPS+S+S+             +R SS L+SRS NS+     LP  
Sbjct: 48  KRPKSRQVSSRYMSPSPSTSASVP------------RRCSSPLISRSTNSTASSTPLPVA 95

Query: 69  GTK------RSQSVDRRR----------QLSTITRMLITSTRSLSVSFQGETFSLPISKT 112
            +       RS SVDRRR          ++S  +R+L TSTRSLSVSFQGE FSLPISK 
Sbjct: 96  ASSTSSSFPRSHSVDRRRPATAAPGSAGEVSAASRLLFTSTRSLSVSFQGEAFSLPISKA 155

Query: 113 KA--------KATPETRRGTPVR-----DQ-----PWPGRTQQGNPICQ 143
           KA        K TPE R+ TPVR     DQ     PWPGR++  N + +
Sbjct: 156 KAAPNLGNVRKGTPERRKPTPVRGSGAVDQVENSRPWPGRSRSVNVLAR 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797340|emb|CAN69354.1| hypothetical protein VITISV_014039 [Vitis vinifera]

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/179 (43%), Positives = 99/179 (55%), Gaps = 50/179 (27%)

Query: 13  RKPKGRFVSSRYLSPSPSSSSSLTTATTTAKSQSQSQRFSSLLVSRSINSSN----LPAL 68
           ++PK R VSSRY+SPSPS+S+S+             +R SS L+SRS NS+     LP  
Sbjct: 47  KRPKSRQVSSRYMSPSPSTSASVP------------RRCSSPLISRSTNSTASSTPLPVA 94

Query: 69  GTK------RSQSVDRRR----------QLSTITRMLITSTRSLSVSFQGETFSLPISKT 112
            +       RS SVDRRR          ++S  +R+L TSTRSLSVSFQGE FSLPISK 
Sbjct: 95  ASSTSSSFPRSHSVDRRRPATAAPGSAGEVSAASRLLFTSTRSLSVSFQGEAFSLPISKA 154

Query: 113 KA--------KATPETRRGTPVR-----DQ-----PWPGRTQQGNPICQGCWILVLRRR 153
           KA        K TPE R+ TPVR     DQ     PWPGR++  N + +     V R++
Sbjct: 155 KAAPNLGNVRKGTPERRKPTPVRGSGAVDQVENSRPWPGRSRSVNVLARSFDCSVDRKK 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056236|ref|XP_002298769.1| predicted protein [Populus trichocarpa] gi|222846027|gb|EEE83574.1| predicted protein [Populus trichocarpa]

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 107/178 (60%), Gaps = 50/178 (28%)

Query: 12  TRKPKGRFVSSRYLSPSPSSSSSLTTATTTAKSQSQS----QRFSSLLVSRSINS--SNL 65
           TRKP+G+ V SRYLSPSPS+S++ TT TTT+ S S S    +R  S L+SRS NS  S+ 
Sbjct: 46  TRKPRGKQVPSRYLSPSPSTSTTTTTTTTTSSSSSSSSSFPKRLPSPLLSRSTNSGTSHT 105

Query: 66  PAL--------GTKRSQSVDRRR----------------QLSTITRMLITSTRSLSVSFQ 101
           P+         G+KRSQSVDRRR                ++S  T+MLITSTRSLSVSFQ
Sbjct: 106 PSTTTASPFLSGSKRSQSVDRRRPVTSSRETTPNPQGNAEMSAATKMLITSTRSLSVSFQ 165

Query: 102 GETFSLPISKTKA----------KATPETRRGTPVRDQP----------WPGRTQQGN 139
           GE FSLPISK K+          KATPE RR TPV DQ           WPGR+++GN
Sbjct: 166 GEAFSLPISKAKSVTPPQNNVARKATPEKRRATPVGDQGENSRPVDHHRWPGRSREGN 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574305|ref|XP_003555289.1| PREDICTED: uncharacterized protein LOC100815206 [Glycine max]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 106/178 (59%), Gaps = 38/178 (21%)

Query: 1   MVVAISEENPRT-------RKPKGRFVSSRYLSPSPSSSSSLTTATTTAKSQSQS----- 48
           MV AISE+ P T       R+PKGR VSSRY+S SPS S S ++ TTT  S S S     
Sbjct: 1   MVAAISED-PLTSSNGTIPRRPKGRQVSSRYMSHSPSPSPSPSSTTTTTTSTSTSTTTSS 59

Query: 49  -QRFSSLLVSRSINSSNLPALGTKRSQSVDRRRQ-----LSTITRMLITSTRSLSVSFQG 102
            +RF S L+S S NSS    L  KRSQSVDRRR      L    ++L+TSTRSLSVSFQG
Sbjct: 60  SRRFPSPLLSHSSNSST--PLVPKRSQSVDRRRPRPATPLPEAAKLLVTSTRSLSVSFQG 117

Query: 103 ETFSLPISKTKA---------KATPETRRGTPVR-------DQP-WPGRTQQGNPICQ 143
           E FSLP+SKTKA          ATPE RR TPV+       DQ  WP RT++ + + +
Sbjct: 118 EAFSLPVSKTKAAAATPPPRKAATPERRRATPVKGENSRPVDQHRWPARTRRVDHLSK 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536117|ref|XP_003536586.1| PREDICTED: uncharacterized protein LOC100808920 [Glycine max]

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 108/185 (58%), Gaps = 42/185 (22%)

Query: 1   MVVAISEENPRT-------RKPKGRFVSSRYLSPSPSSSSSLTTATTTAKSQSQSQRFSS 53
           MV AISE+ P T       R+PKGR VSSRY+S SPS SS+ TT TTT+ S S S   SS
Sbjct: 1   MVAAISED-PLTSSNGTIPRRPKGRQVSSRYMSHSPSPSSTTTTTTTTSTSTSTSTTSSS 59

Query: 54  L------LVSRSINSSN--LPALGTKRSQSVDRRRQ-----LSTITRMLITSTRSLSVSF 100
                  L+S S NSS   LP    KRSQSVDRRR      L    ++L+TSTRSLSVSF
Sbjct: 60  SRRFPSPLLSHSTNSSTPLLP----KRSQSVDRRRPRPATPLPEAAKLLVTSTRSLSVSF 115

Query: 101 QGETFSLPISKTKA---------KATPETRRGTPVR-------DQP-WPGRTQQGNPICQ 143
           QGE FSLP+SKTKA          ATPE RR TPV+       DQ  WP RT+  + + +
Sbjct: 116 QGEAFSLPVSKTKAASATPTPRKAATPERRRATPVKGENSRPADQHRWPARTRHVDHLSK 175

Query: 144 GCWIL 148
              I+
Sbjct: 176 SVDII 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438327|ref|XP_004136940.1| PREDICTED: uncharacterized protein LOC101215899 [Cucumis sativus]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 100/192 (52%), Gaps = 63/192 (32%)

Query: 13  RKPKGRFVSSRYLSPSPSSSSSLTTATTTAKSQSQSQRFSSLLVSRSIN----SSNLPAL 68
           RKP+GR V SRY+S    S S+ T+ ++T  S + S+RF S L+SRS N    S+ LP+ 
Sbjct: 51  RKPRGRQVPSRYMS---PSPSTSTSTSSTTSSSASSRRFPSPLLSRSTNLTPASTPLPSS 107

Query: 69  GTKRSQSVDRRR-------------------QLSTITRMLITSTRSLSVSFQGETFSLPI 109
           G KRSQSVDRRR                     S   ++L+TSTRSLSVSFQGE FSLPI
Sbjct: 108 GPKRSQSVDRRRTTTPRSITPVLDSRHGNATDSSAAAKLLVTSTRSLSVSFQGEAFSLPI 167

Query: 110 SKTKAKA-----------TPETRRGTPVRDQP-----------------WPGRTQ----Q 137
           SKTKA A           TPE RR TP+RD+                  WP R +    +
Sbjct: 168 SKTKATATPSLSNARKGSTPERRRATPLRDKSDGSGVQVENSKLLDQHRWPARNRHANLE 227

Query: 138 GNPI-----CQG 144
           GNP+     C G
Sbjct: 228 GNPLSRSFDCGG 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2007233	659	QWRF2 "QWRF domain containing	0.545	0.144	0.483	9e-15
TAIR|locus:2091166	644	SCO3 "AT3G19570" [Arabidopsis	0.5	0.135	0.525	3e-14

TAIR|locus:2007233 QWRF2 "QWRF domain containing 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 9.0e-15, P = 9.0e-15
 Identities = 58/120 (48%), Positives = 68/120 (56%)

Query:    66 PALGTKRSQSVDRRR----------QLSTITRMLITSTRSLSVSFQGETFSLPISKTKA- 114
             P+L  KRSQSVDRRR          ++S  T+MLITSTRSLSVSFQGE FSLPISK K  
Sbjct:   103 PSLLPKRSQSVDRRRPSAVSVTVGTEMSAATKMLITSTRSLSVSFQGEAFSLPISKKKET 162

Query:   115 --------KATPETRRGTPVRDQPWPGRTQQGNPICQGCWILVLRRRLNSMRTPPRTRTK 166
                     K+TPE RR TPVRDQ      +   P+ Q  W    RR  NS    P + ++
Sbjct:   163 TSTPVSHRKSTPERRRSTPVRDQ-----RENSKPVDQQRWPGASRRG-NSESVVPNSLSR 216

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2091166 SCO3 "AT3G19570" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 52/99 (52%), Positives = 61/99 (61%)

Query:    66 PALGTKRSQSVDRRR---------QLSTITRMLITSTRSLSVSFQGETFSLPISKTKAKA 116
             P+   KRSQSVDRRR         ++S  T+MLITSTRSLSVSFQGE FS PISK K  A
Sbjct:   105 PSSLPKRSQSVDRRRPSAVSDTRTEMSAATKMLITSTRSLSVSFQGEAFSFPISKKKETA 164

Query:   117 TPET-RRGTPVRDQPWPGRTQQGN--PICQGCWILVLRR 152
             TP + R+ TP R +  P R Q+ N  P+ Q  W    RR
Sbjct:   165 TPVSHRKCTPERRRATPVRDQRENSKPVDQQLWPGASRR 203


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      174       129   0.00091  102 3  11 22  0.39    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  506 (54 KB)
  Total size of DFA:  106 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.15u 0.09s 12.24t   Elapsed:  00:00:02
  Total cpu time:  12.15u 0.09s 12.24t   Elapsed:  00:00:02
  Start:  Thu May  9 14:07:27 2013   End:  Thu May  9 14:07:29 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005777 "peroxisome" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.IX.2521.1 hypothetical protein (606 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00