Citrus Sinensis ID: 030717

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MKEEQVITSIQCPTRLATIYRLSPLKSFHWKQQLSMELELQKYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIESMED
Secondary Structure (PSIPRED)
ccHHHHHHHHccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcHHHcccccccccccccccHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccHHHHHHcccccHHHHHHHHHHcEccEccccHcccccccccccccccHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mkeeqvitsiqcptrlatiyrlsplksfhwKQQLSMELElqkydtynvlclpVSLGFFHAAVSLAQTVDIQKGVSLFRQACigchdgggnviqpgATLFLKDLqrngvdtedeIYHVTyfgkgrmpgfgekctprgqctfgarlQDEDIKLLAQFVKSqadqgwpkiesmed
Flexible Loop (DISEMBL)
mkeeqvitsiqcptrlaTIYRLSPLKSFHWKQQLSMELELQKYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVksqadqgwpkiesmed
Low Complexity Region (SEG)
MKEEQVITSIQCPTRLATIYRLSPLKSFHWKQQLSMELELQKYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIESMED
Disordered region (IsUnstruct)
*****VITSIQCPTRLATIYRLSPLKSFHWKQQLSMELELQKYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVK***************
Disordered Region (DISOPRED)
****QVI*SIQC**********************SMELELQKYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD***********
Disordered Region (DISEMBL)
*********IQCPTRLATIYRLSPLKSFHWKQQLSMELELQKYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIESMED
Disordered Region (DISPRO)
***EQVITSIQCPTRLATIYRLSPLKSFHWKQQLSMELELQKYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEEQVITSIQCPTRLATIYRLSPLKSFHWKQQLSMELELQKYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIESMED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q93VA3	175	Cytochrome c6, chloroplas	yes	no	0.622	0.611	0.803	5e-49
P00110	86	Cytochrome c6 OS=Bumiller	N/A	no	0.494	0.988	0.381	5e-12
Q8WKJ8	110	Cytochrome c6 OS=Porphyra	N/A	no	0.517	0.809	0.366	4e-11
P00108	85	Cytochrome c6 OS=Petaloni	N/A	no	0.494	1.0	0.381	6e-11
P00111	85	Cytochrome c6 OS=Porphyra	N/A	no	0.494	1.0	0.371	7e-11
Q9TLW1	109	Cytochrome c6 OS=Cyanidiu	N/A	no	0.604	0.954	0.299	8e-11
Q9F1L9	112	Cytochrome c6 OS=Thermosy	N/A	no	0.593	0.910	0.315	1e-10
P46445	120	Cytochrome c6 OS=Synechoc	N/A	no	0.604	0.866	0.330	1e-10
P00109	86	Cytochrome c6 OS=Alaria e	N/A	no	0.494	0.988	0.360	2e-10
P51200	110	Cytochrome c6 OS=Porphyra	N/A	no	0.517	0.809	0.356	2e-10

>sp|Q93VA3|CYC6_ARATH Cytochrome c6, chloroplastic OS=Arabidopsis thaliana GN=petJ PE=1 SV=1

 Score =  193 bits (490), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 86/107 (80%), Positives = 97/107 (90%)

Query: 63  SLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK 122
           SL QT+DIQ+G +LF +ACIGCHD GGN+IQPGATLF KDL+RNGVDTE+EIY VTYFGK
Sbjct: 68  SLGQTLDIQRGATLFNRACIGCHDTGGNIIQPGATLFTKDLERNGVDTEEEIYRVTYFGK 127

Query: 123 GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIES 169
           GRMPGFGEKCTPRGQCTFG RLQDE+IKLLA+FVK QADQGWP + +
Sbjct: 128 GRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFVKFQADQGWPTVST 174

Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.
Arabidopsis thaliana (taxid: 3702)

>sp|P00110|CYC6_BUMFI Cytochrome c6 OS=Bumilleriopsis filiformis GN=petJ PE=1 SV=1

 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 12/97 (12%)

Query: 68  VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
            DI+ G  +F   C  CH GG NVI P  TL    L+ NG++    I +    GK  MP 
Sbjct: 1   ADIENGERIFTANCAACHAGGNNVIMPEKTLKKDALEANGMNAVSAITYQVTNGKNAMP- 59

Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
                       FG RL D DI+ +A +V SQ++QGW
Sbjct: 60  -----------AFGGRLSDSDIEDVANYVLSQSEQGW 85

Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.

Bumilleriopsis filiformis (taxid: 2835)

>sp|Q8WKJ8|CYC6_PORYE Cytochrome c6 OS=Porphyra yezoensis GN=petJ PE=1 SV=1

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 64  LAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKG 123
           +A   D+  G  +F   C  CH GG N I P  TL    L+ N ++T D I +    GK 
Sbjct: 22  IAFAADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKN 81

Query: 124 RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
            MP             FG RL DEDI+  A +V SQ+++GW
Sbjct: 82  AMPA------------FGGRLVDEDIEDAANYVLSQSEKGW 110

Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.

Porphyra yezoensis (taxid: 2788)

>sp|P00108|CYC6_PETFA Cytochrome c6 OS=Petalonia fascia GN=petJ PE=1 SV=1

 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 47/97 (48%), Gaps = 12/97 (12%)

Query: 68  VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
           VDI  G S+F   C  CH GG NVI P  TL    L+ N ++    I +    GK  MP 
Sbjct: 1   VDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALEENEMNNIKSITYQVTNGKNAMPA 60

Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
                       FG RL + DI+ +A FV SQ+ +GW
Sbjct: 61  ------------FGGRLSETDIEDVANFVISQSQKGW 85

Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.

Petalonia fascia (taxid: 2893)

>sp|P00111|CYC6_PORTE Cytochrome c6 OS=Porphyra tenera GN=petJ PE=1 SV=1

 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 12/97 (12%)

Query: 68  VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
            D+  G  +F   C  CH GG N I P  TL    L+ N ++T D I +    GK  MP 
Sbjct: 1   ADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMP- 59

Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
                       FG RL DEDI+  A +V SQ+++GW
Sbjct: 60  -----------AFGGRLVDEDIEDAANYVLSQSEKGW 85

Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.

Porphyra tenera (taxid: 2785)

>sp|Q9TLW1|CYC6_CYACA Cytochrome c6 OS=Cyanidium caldarium GN=petJ PE=3 SV=2

 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 13/117 (11%)

Query: 48  VLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG 107
           ++ + V+L        +  + +++ G  +F   C  CH GG NVI P  TL  + L+ N 
Sbjct: 6   IIVVAVTLCALFTNEHVVYSANLEHGEQIFSANCAACHAGGNNVIMPEKTLKAEALEANN 65

Query: 108 VDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
           +     I +    GK  MP F             +RL D DI+ +A +V S+AD+GW
Sbjct: 66  IKNISAIANQVKNGKNAMPSF-------------SRLSDSDIEDVANYVLSKADKGW 109

Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.

Cyanidium caldarium (taxid: 2771)

>sp|Q9F1L9|CYC6_THEVL Cytochrome c6 OS=Thermosynechococcus vulcanus GN=petJ PE=3 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 12/114 (10%)

Query: 52  PVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTE 111
            +++  F +    A   D+  G  +F   C  CH GGGNV+    TL  + L++ G+ +E
Sbjct: 10  AIAIALFVSLTPAALAADLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMYSE 69

Query: 112 DEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWP 165
           D I +    GK  MP             F  RL DE I+ +A +V  QA +GW 
Sbjct: 70  DAIIYQVQHGKNAMP------------AFAGRLTDEQIQDVAAYVLDQAAKGWA 111

Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.

Thermosynechococcus vulcanus (taxid: 32053)

>sp|P46445|CYC6_SYNY3 Cytochrome c6 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=petJ PE=1 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 14/118 (11%)

Query: 49  LCLP--VSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN 106
           + LP  + LG   +  + A   D+  G ++F   C  CH+GG N I P  TL + DL+ N
Sbjct: 15  IALPCLIFLGGIFSLGNTALAADLAHGKAIFAGNCAACHNGGLNAINPSKTLKMADLEAN 74

Query: 107 GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
           G ++   I      G G MPGF      +G      R+ D D++ +A +V  QA++GW
Sbjct: 75  GKNSVAAIVAQITNGNGAMPGF------KG------RISDSDMEDVAAYVLDQAEKGW 120

Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P00109|CYC6_ALAES Cytochrome c6 OS=Alaria esculenta GN=petJ PE=1 SV=1

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 12/97 (12%)

Query: 68  VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
           +DI  G ++F   C  CH GG NVI P  TL    L  N + + + I +    GK  MP 
Sbjct: 1   IDINNGENIFTANCSACHAGGNNVIMPEKTLKKDALADNKMVSVNAITYQVTNGKNAMPA 60

Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
                       FG+RL + DI+ +A FV +Q+D+GW
Sbjct: 61  ------------FGSRLAETDIEDVANFVLTQSDKGW 85

Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.

Alaria esculenta (taxid: 2889)

>sp|P51200|CYC6_PORPU Cytochrome c6 OS=Porphyra purpurea GN=petJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 12/101 (11%)

Query: 64  LAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKG 123
           +A   D+  G  +F   C  CH GG N I P  TL    L+ N ++  D I +    GK 
Sbjct: 22  VAFAADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNGIDAITYQVTNGKN 81

Query: 124 RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
            MP             FG RL DEDI+  A +V SQ+++GW
Sbjct: 82  AMPA------------FGGRLVDEDIEDAANYVLSQSEKGW 110

Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.

Porphyra purpurea (taxid: 2787)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
224109570	159	predicted protein [Populus trichocarpa]	0.662	0.716	0.789	8e-50
359473056	167	PREDICTED: cytochrome c6, chloroplastic	0.662	0.682	0.789	6e-49
359473054	173	PREDICTED: cytochrome c6, chloroplastic	0.662	0.658	0.789	6e-49
388509494	173	unknown [Medicago truncatula]	0.75	0.745	0.659	7e-49
147798986	125	hypothetical protein VITISV_008455 [Viti	0.662	0.912	0.789	9e-49
357475185	173	Cytochrome c6 [Medicago truncatula] gi|1	0.75	0.745	0.659	1e-48
10177496	151	unnamed protein product [Arabidopsis tha	0.813	0.927	0.675	2e-48
224134402	110	predicted protein [Populus trichocarpa]	0.639	1.0	0.809	2e-48
18422509	175	cytochrome c6 [Arabidopsis thaliana] gi|	0.622	0.611	0.803	2e-47
297794803	176	electron transporter protein [Arabidopsi	0.622	0.607	0.794	3e-47

>gi|224109570|ref|XP_002333234.1| predicted protein [Populus trichocarpa] gi|222835556|gb|EEE73991.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 90/114 (78%), Positives = 100/114 (87%)

Query: 59  HAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT 118
           +  VSL QT+D+Q+G SLF + CIGCHD GGN+IQPGATLF KDLQRNGVDTE+EIY +T
Sbjct: 46  NTPVSLGQTLDVQRGASLFSRTCIGCHDAGGNIIQPGATLFTKDLQRNGVDTEEEIYRMT 105

Query: 119 YFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIESMED 172
           YFGKGRMPGFGE CTPRGQCTFG RLQDE+IKLLAQFVKSQADQGWP IE  +D
Sbjct: 106 YFGKGRMPGFGESCTPRGQCTFGPRLQDEEIKLLAQFVKSQADQGWPNIEISQD 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473056|ref|XP_002277599.2| PREDICTED: cytochrome c6, chloroplastic isoform 1 [Vitis vinifera]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 90/114 (78%), Positives = 101/114 (88%)

Query: 59  HAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT 118
           +  VSLAQT DIQ+G +LF +ACIGCHD GGN+IQPGATLFLKDLQRNGVDTE+EIY VT
Sbjct: 54  NTPVSLAQTTDIQRGAALFGRACIGCHDAGGNIIQPGATLFLKDLQRNGVDTEEEIYRVT 113

Query: 119 YFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIESMED 172
           Y+GKGRMPGFGE CTPRGQCTFGARLQ+E+IKLLA+FVK QADQGWP +E   D
Sbjct: 114 YYGKGRMPGFGENCTPRGQCTFGARLQEEEIKLLAEFVKLQADQGWPNLEISGD 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473054|ref|XP_003631239.1| PREDICTED: cytochrome c6, chloroplastic isoform 2 [Vitis vinifera] gi|297737964|emb|CBI27165.3| unnamed protein product [Vitis vinifera]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 90/114 (78%), Positives = 101/114 (88%)

Query: 59  HAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT 118
           +  VSLAQT DIQ+G +LF +ACIGCHD GGN+IQPGATLFLKDLQRNGVDTE+EIY VT
Sbjct: 60  NTPVSLAQTTDIQRGAALFGRACIGCHDAGGNIIQPGATLFLKDLQRNGVDTEEEIYRVT 119

Query: 119 YFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIESMED 172
           Y+GKGRMPGFGE CTPRGQCTFGARLQ+E+IKLLA+FVK QADQGWP +E   D
Sbjct: 120 YYGKGRMPGFGENCTPRGQCTFGARLQEEEIKLLAEFVKLQADQGWPNLEISGD 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509494|gb|AFK42813.1| unknown [Medicago truncatula]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 89/135 (65%), Positives = 110/135 (81%), Gaps = 6/135 (4%)

Query: 41  QKYDTYNVLCLPVSLGFFHAA------VSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQP 94
           Q+   +N L  P++  F  ++      VS+AQT+DIQ+G +LF Q CIGCHD GGN+IQP
Sbjct: 36  QQVKFFNNLAPPLAAAFLLSSPICATPVSIAQTIDIQRGATLFSQTCIGCHDAGGNIIQP 95

Query: 95  GATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQ 154
           G+TLF KDLQRNGVDTE+EIY VTY+GKGRMPGFG++C PRGQCTFGARL+DEDIK+LA+
Sbjct: 96  GSTLFTKDLQRNGVDTEEEIYRVTYYGKGRMPGFGKECMPRGQCTFGARLEDEDIKILAE 155

Query: 155 FVKSQADQGWPKIES 169
           FVK QAD+GWP IE+
Sbjct: 156 FVKLQADKGWPSIET 170

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798986|emb|CAN61634.1| hypothetical protein VITISV_008455 [Vitis vinifera]

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 90/114 (78%), Positives = 101/114 (88%)

Query: 59  HAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT 118
           +  VSLAQT DIQ+G +LF +ACIGCHD GGN+IQPGATLFLKDLQRNGVDTE+EIY VT
Sbjct: 12  NTPVSLAQTTDIQRGAALFGRACIGCHDAGGNIIQPGATLFLKDLQRNGVDTEEEIYRVT 71

Query: 119 YFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIESMED 172
           Y+GKGRMPGFGE CTPRGQCTFGARLQ+E+IKLLA+FVK QADQGWP +E   D
Sbjct: 72  YYGKGRMPGFGENCTPRGQCTFGARLQEEEIKLLAEFVKLQADQGWPNLEISGD 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475185|ref|XP_003607878.1| Cytochrome c6 [Medicago truncatula] gi|124359658|gb|ABN06030.1| Cytochrome c, monohaem [Medicago truncatula] gi|355508933|gb|AES90075.1| Cytochrome c6 [Medicago truncatula]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/135 (65%), Positives = 108/135 (80%), Gaps = 6/135 (4%)

Query: 41  QKYDTYNVLCLPVSLGFF------HAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQP 94
           Q+   +N L  P++  F          VS+AQT+DIQ+G +LF Q CIGCHD GGN+IQP
Sbjct: 36  QQVKFFNNLAPPLAAAFLLFSPICATPVSIAQTIDIQRGATLFSQTCIGCHDAGGNIIQP 95

Query: 95  GATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQ 154
           G+TLF KDLQRNGVDTE+EIY VTY+GKGRMPGFG++C PRGQCTFGARL+DEDIK+LA+
Sbjct: 96  GSTLFTKDLQRNGVDTEEEIYRVTYYGKGRMPGFGKECMPRGQCTFGARLEDEDIKILAE 155

Query: 155 FVKSQADQGWPKIES 169
           FVK QAD+GWP IE+
Sbjct: 156 FVKLQADKGWPSIET 170

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177496|dbj|BAB10887.1| unnamed protein product [Arabidopsis thaliana]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/145 (67%), Positives = 115/145 (79%), Gaps = 5/145 (3%)

Query: 29  HWKQ---QLSMELELQKYDTYNVLCLPVSLGFFHAAV-SLAQTVDIQKGVSLFRQACIGC 84
           +WKQ   Q  +EL L+     NV  + VS  + +  V SL QT+DIQ+G +LF +ACIGC
Sbjct: 7   NWKQRCNQCIVELLLELKYVLNVF-MKVSCFYGYCGVESLGQTLDIQRGATLFNRACIGC 65

Query: 85  HDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARL 144
           HD GGN+IQPGATLF KDL+RNGVDTE+EIY VTYFGKGRMPGFGEKCTPRGQCTFG RL
Sbjct: 66  HDTGGNIIQPGATLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRL 125

Query: 145 QDEDIKLLAQFVKSQADQGWPKIES 169
           QDE+IKLLA+FVK QADQGWP + +
Sbjct: 126 QDEEIKLLAEFVKFQADQGWPTVST 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134402|ref|XP_002321813.1| predicted protein [Populus trichocarpa] gi|222868809|gb|EEF05940.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/110 (80%), Positives = 98/110 (89%)

Query: 63  SLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK 122
           SL QT+D+Q+G SLF + CIGCHD GGN+IQPGATLF KDLQRNGVDTE+EIY +TYFGK
Sbjct: 1   SLGQTLDVQRGASLFSRTCIGCHDAGGNIIQPGATLFTKDLQRNGVDTEEEIYRITYFGK 60

Query: 123 GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIESMED 172
           GRMPGFGE CTPRGQCTFG RLQDE+IKLLAQFVKSQADQGWP IE  +D
Sbjct: 61  GRMPGFGESCTPRGQCTFGPRLQDEEIKLLAQFVKSQADQGWPNIEISQD 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422509|ref|NP_568640.1| cytochrome c6 [Arabidopsis thaliana] gi|27805454|sp|Q93VA3.1|CYC6_ARATH RecName: Full=Cytochrome c6, chloroplastic; AltName: Full=Cytochrome c-552; Short=Atc6; AltName: Full=Cytochrome c-553; AltName: Full=Cytochrome c553; AltName: Full=Soluble cytochrome f; Flags: Precursor gi|13926305|gb|AAK49619.1|AF372903_1 AT5g45040/K21C13_23 [Arabidopsis thaliana] gi|16323250|gb|AAL15359.1| AT5g45040/K21C13_23 [Arabidopsis thaliana] gi|19571824|emb|CAD27418.1| c6 type cytochrome [Arabidopsis thaliana] gi|332007810|gb|AED95193.1| cytochrome c6 [Arabidopsis thaliana]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/107 (80%), Positives = 97/107 (90%)

Query: 63  SLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK 122
           SL QT+DIQ+G +LF +ACIGCHD GGN+IQPGATLF KDL+RNGVDTE+EIY VTYFGK
Sbjct: 68  SLGQTLDIQRGATLFNRACIGCHDTGGNIIQPGATLFTKDLERNGVDTEEEIYRVTYFGK 127

Query: 123 GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIES 169
           GRMPGFGEKCTPRGQCTFG RLQDE+IKLLA+FVK QADQGWP + +
Sbjct: 128 GRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFVKFQADQGWPTVST 174

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794803|ref|XP_002865286.1| electron transporter protein [Arabidopsis lyrata subsp. lyrata] gi|297311121|gb|EFH41545.1| electron transporter protein [Arabidopsis lyrata subsp. lyrata]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 85/107 (79%), Positives = 97/107 (90%)

Query: 63  SLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK 122
           SL QT+DIQ+G +LF +ACIGCHD GGN+IQPGATLF KDL+RNGVDTE+EIY VTYFGK
Sbjct: 69  SLGQTLDIQRGATLFNRACIGCHDTGGNIIQPGATLFTKDLERNGVDTEEEIYRVTYFGK 128

Query: 123 GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIES 169
           GRMPGFGEKCTPRGQCTFG RLQDE+IKLLA+FVK QAD+GWP + +
Sbjct: 129 GRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFVKFQADKGWPNVST 175

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2155332	175	CYTC6A "cytochrome c6A" [Arabi	0.622	0.611	0.803	1.8e-46
TIGR_CMR|GSU_2743	111	GSU_2743 "cytochrome c family	0.534	0.828	0.314	6.1e-07
TIGR_CMR|GSU_2432	104	GSU_2432 "cytochrome c family	0.354	0.586	0.396	4.3e-06

TAIR|locus:2155332 CYTC6A "cytochrome c6A" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 86/107 (80%), Positives = 97/107 (90%)

Query:    63 SLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK 122
             SL QT+DIQ+G +LF +ACIGCHD GGN+IQPGATLF KDL+RNGVDTE+EIY VTYFGK
Sbjct:    68 SLGQTLDIQRGATLFNRACIGCHDTGGNIIQPGATLFTKDLERNGVDTEEEIYRVTYFGK 127

Query:   123 GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIES 169
             GRMPGFGEKCTPRGQCTFG RLQDE+IKLLA+FVK QADQGWP + +
Sbjct:   128 GRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFVKFQADQGWPTVST 174

GO:0005506 "iron ion binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0020037 "heme binding" evidence=IEA

TIGR_CMR|GSU_2743 GSU_2743 "cytochrome c family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 33/105 (31%), Positives = 52/105 (49%)

Query:    53 VSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTED 112
             V L F  A+       D+++G  LF+Q C  CH  GGN++ P   L  + L+ N + +  
Sbjct:    14 VGLSFGVASAKGKGDKDLKRGEELFKQHCAVCHPEGGNIVNPQKPLGKESLKANKITSWK 73

Query:   113 EIYHVTYFGKGRMPGFGEKCTPRGQCTFGAR-LQDEDIKLLAQFV 156
             +I         R PG      P G  TF A+ + D+D KL+A+++
Sbjct:    74 DIVKTM-----RNPG------P-GMSTFDAKAIPDKDAKLVAEYI 106

GO:0009055 "electron carrier activity" evidence=ISS

TIGR_CMR|GSU_2432 GSU_2432 "cytochrome c family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 25/63 (39%), Positives = 30/63 (47%)

Query:    73 GVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDT-EDEIYHVTYFGKGRMPGFGEK 131
             G  LF   C GCH  GGN + P  TL     + NG+ T  D   ++   G G MP FGE 
Sbjct:    27 GGELFATHCAGCHPQGGNTVHPEKTLARARREANGIRTVRDVAAYIRNPGPG-MPAFGEA 85

Query:   132 CTP 134
               P
Sbjct:    86 MIP 88


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      172       172   0.00093  108 3  11 22  0.38    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  160 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.97u 0.12s 15.09t   Elapsed:  00:00:01
  Total cpu time:  14.97u 0.12s 15.09t   Elapsed:  00:00:01
  Start:  Mon May 20 18:29:33 2013   End:  Mon May 20 18:29:34 2013

GO:0009055 "electron carrier activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93VA3	CYC6_ARATH	No assigned EC number	0.8037	0.6220	0.6114	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PETJ	cytochrome c6 (ATC6); cytochrome c6 (ATC6); FUNCTIONS IN- electron carrier activity, iron ion binding, heme binding; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Cytochrome c, class I (InterPro-IPR003088), Cytochrome c, monohaem (InterPro-IPR009056); Has 411 Blast hits to 411 proteins in 105 species- Archae - 0; Bacteria - 225; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 148 (source- NCBI BLink). ; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis (175 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G52960	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (170 aa)				•					0.762
	AT4G33350	chloroplast inner membrane import protein Tic22, putative; chloroplast inner membrane import pr [...] (268 aa)							•		0.679
	AT1G64355	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (199 aa)			•	•					0.677
	AT1G64510	ribosomal protein S6 family protein; ribosomal protein S6 family protein; FUNCTIONS IN- structu [...] (207 aa)				•					0.677
	AT4G12970	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (102 aa)				•					0.671
	AT2G44920	thylakoid lumenal 15 kDa protein, chloroplast; thylakoid lumenal 15 kDa protein, chloroplast; F [...] (224 aa)				•					0.653
	AT5G24490	30S ribosomal protein, putative; 30S ribosomal protein, putative; FUNCTIONS IN- structural cons [...] (308 aa)				•					0.651
	AT5G22340	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (340 aa)				•					0.651
	PSBX	PSBX (photosystem II subunit X); Encodes a protein with sequence similarity to the spinach phot [...] (116 aa)				•			•		0.643
	PETB	unknown protein; Encodes the cytochrome b(6) subunit of the cytochrome b6f complex. ; Component [...] (215 aa)							•		0.636

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
CHL00183	108	CHL00183, petJ, cytochrome c553; Provisional	2e-21
PRK13697	111	PRK13697, PRK13697, cytochrome c6; Provisional	2e-18
pfam13442	67	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase,	2e-11
COG2863	121	COG2863, COG2863, Cytochrome c553 [Energy producti	2e-06
COG2010	150	COG2010, CccA, Cytochrome c, mono- and diheme vari	3e-05
TIGR00782	285	TIGR00782, ccoP, cytochrome c oxidase, cbb3-type,	5e-05
PRK13622	180	PRK13622, psbV, cytochrome c-550; Provisional	6e-05
pfam00034	81	pfam00034, Cytochrom_C, Cytochrome c	8e-05
TIGR03046	155	TIGR03046, PS_II_psbV2, photosystem II cytochrome	1e-04
PRK13621	170	PRK13621, psbV, cytochrome c-550; Provisional	3e-04

>gnl|CDD|177085 CHL00183, petJ, cytochrome c553; Provisional

 Score = 83.7 bits (207), Expect = 2e-21
 Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 53  VSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTED 112
           +S     +    A   D+  G  +F   C  CH GG NVI P  TL    L+ N +++ +
Sbjct: 9   ISCFALISFSQPAFAADLDNGEQIFSANCAACHAGGNNVIMPEKTLKKDALEANSMNSIE 68

Query: 113 EI-YHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
            I Y VT  GK  MP             FG RL DEDI+ +A +V SQA++GW
Sbjct: 69  AITYQVTN-GKNAMP------------AFGGRLSDEDIEDVANYVLSQAEKGW 108

Length = 108

>gnl|CDD|184253 PRK13697, PRK13697, cytochrome c6; Provisional

 Score = 75.6 bits (186), Expect = 2e-18
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 12/108 (11%)

Query: 57  FFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYH 116
              A  S A   D   G  +F   C  CH GG N++  G TL   DL++ G+ + + I  
Sbjct: 15  LTFAFSSPALAADAANGEQVFSANCASCHAGGKNLVNAGKTLKKADLEKYGMYSLEAITA 74

Query: 117 VTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
               GK  MP F +            RL  + I+ +A +V  QA++GW
Sbjct: 75  QVTNGKNAMPAFKD------------RLSPDQIEDVAAYVLEQAEKGW 110

Length = 111

>gnl|CDD|205620 pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 22/88 (25%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
           D   G +L+   C  CH  GG     G  LF   L        + +  +   GKG MP F
Sbjct: 2   DAAAGEALYDANCAACHGTGGA----GPPLFGDAL------APEALIKIVLNGKGAMPAF 51

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFV 156
           G   +            DE+I+ LA ++
Sbjct: 52  GGDLS------------DEEIEALAAYL 67

Length = 67

>gnl|CDD|225418 COG2863, COG2863, Cytochrome c553 [Energy production and conversion]

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 17/113 (15%)

Query: 48  VLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG 107
           +L   + L    AA       D   G +L  Q+C  CH   GN   PG    L       
Sbjct: 4   ILLALLVLAL--AAAIAWAAADAALGKALAAQSCAACHGADGNSPAPGYPK-LAGQ---- 56

Query: 108 VDTEDEIYHVTY-FGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159
             +E  +      +  G+ PG      P       + L DEDI  LA +  +Q
Sbjct: 57  --SEAYLEKQLKAYKDGKRPG------PVMN-AIASGLSDEDIADLAAYYAAQ 100

Length = 121

>gnl|CDD|224921 COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy production and conversion]

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 28/110 (25%), Positives = 36/110 (32%), Gaps = 19/110 (17%)

Query: 53  VSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCH---DGGGNVIQPGATLFLKDLQRNGVD 109
            +     AA + A       G++LF   C  CH    GG   +  G  L   D       
Sbjct: 34  WAALNQIAAAAAAPAAARGAGLALFLGNCAACHGPNLGGAGPLLDGPALAGGDPPYI--- 90

Query: 110 TEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159
               I H T  G G MP F +             L DE I  +A +V   
Sbjct: 91  -VWTILHGTRGGWGEMPAFAD------------TLSDEQIAAVAAYVMPD 127

Length = 150

>gnl|CDD|129864 TIGR00782, ccoP, cytochrome c oxidase, cbb3-type, subunit III

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 18/106 (16%)

Query: 61  AVSLAQTVD---IQKGVSLFRQACIGCH--DGGGNVIQPGATLFLKDLQRNGVDTEDEIY 115
           ++S  +  D     KG  LF   C  CH  DG G     GA     D+   G D +    
Sbjct: 191 SLSSGKPKDEALAAKGQELFADNCTTCHGEDGKGLQEL-GAPNLTDDVWLYGGDLKTITT 249

Query: 116 HVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD 161
            +T    G MP             +G RL +  IK LA +V S   
Sbjct: 250 TITNGRGGVMP------------AWGPRLSEAQIKALAAYVHSLGG 283

This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase [Energy metabolism, Electron transport]. Length = 285

>gnl|CDD|106567 PRK13622, psbV, cytochrome c-550; Provisional

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 11/114 (9%)

Query: 70  IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQ------RNGVDTEDEIYH-VTYFGK 122
           + KG  LF +AC  CH GG     P  +L L DL+       N +   D I + VTY G 
Sbjct: 62  LAKGKKLFNRACAQCHVGGQTYPNPDVSLKLSDLEGATPPRDNVLAIVDYIKNPVTYDGV 121

Query: 123 GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQ--GW--PKIESMED 172
             +  +        +      L DED+KL+A ++  QA    GW   K ES  D
Sbjct: 122 ESLLEYHPNTQLLSEYPRLRNLTDEDLKLIAGYILVQAKTVPGWGGTKNESHSD 175

Length = 180

>gnl|CDD|215669 pfam00034, Cytochrom_C, Cytochrome c

 Score = 39.1 bits (91), Expect = 8e-05
 Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 22/96 (22%)

Query: 72  KGVSLFRQACIGCH--DGGGNVIQPGATLFLKDLQRNGVDTEDEIYH-----VTYFGKGR 124
           KG  LF   C  CH  DG G    P             +D    I              +
Sbjct: 1   KGKKLFAANCAACHGADGKGAGGGPA---LAGAPAGYLLDALAAIKSGARGIGAQAVMSK 57

Query: 125 MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160
            PG   + T            DE+   LA +++S  
Sbjct: 58  APGNATQLT------------DEERAALAAYIRSLK 81

The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family. Length = 81

>gnl|CDD|213762 TIGR03046, PS_II_psbV2, photosystem II cytochrome PsbV2

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 15/105 (14%)

Query: 68  VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
             +  G +LF   C+ CH GG  +  P  +L LKDL +      D I  +  + +  M  
Sbjct: 53  EQLTDGKNLFESNCLNCHVGGATLPNPNVSLSLKDL-KGATPPRDTIQSLVAYQRDPMSY 111

Query: 128 FGEKCTPRGQCTFGAR------LQDEDIKLLAQFV--KSQADQGW 164
            G       + ++G R      + DE+++ LA F+   +Q   GW
Sbjct: 112 DGS------EESYGCRPVPEDWMDDEEVENLAAFILRAAQKAPGW 150

Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene [Energy metabolism, Photosynthesis]. Length = 155

>gnl|CDD|237450 PRK13621, psbV, cytochrome c-550; Provisional

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 68  VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQ 104
             +  G  LF   C+ CH GG  +  P  +L LKDL+
Sbjct: 64  EQLTDGKQLFDSNCLNCHVGGATLPNPNVSLSLKDLR 100

Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
PRK13697	111	cytochrome c6; Provisional	99.82
CHL00183	108	petJ cytochrome c553; Provisional	99.79
PF13442	67	Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type,	99.55
TIGR03872	133	cytochrome_MoxG cytochrome c(L), periplasmic. This	99.54
PRK13621	170	psbV cytochrome c-550; Provisional	99.54
COG3258	293	Cytochrome c [Energy production and conversion]	99.5
TIGR03046	155	PS_II_psbV2 photosystem II cytochrome PsbV2. Membe	99.49
CHL00133	163	psbV photosystem II cytochrome c550; Validated	99.46
TIGR03874	143	4cys_cytochr c-type cytochrome, methanol metabolis	99.44
TIGR03045	159	PS_II_C550 cytochrome c-550. Members of this prote	99.42
TIGR00782	285	ccoP cytochrome c oxidase, cbb3-type, subunit III.	99.4
PRK13622	180	psbV cytochrome c-550; Provisional	99.39
PRK13617	170	psbV cytochrome c-550; Provisional	99.37
COG2863	121	Cytochrome c553 [Energy production and conversion]	99.36
PRK13618	163	psbV cytochrome c-550; Provisional	99.35
PRK13619	160	psbV cytochrome c-550; Provisional	99.35
PRK14486	294	putative bifunctional cbb3-type cytochrome c oxida	99.29
PTZ00405	114	cytochrome c; Provisional	99.25
TIGR00782	285	ccoP cytochrome c oxidase, cbb3-type, subunit III.	99.25
PF00034	91	Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cyt	99.18
TIGR02603	133	CxxCH_TIGR02603 putative heme-binding domain, Pire	99.15
PTZ00048	115	cytochrome c; Provisional	99.14
PRK13620	215	psbV cytochrome c-550; Provisional	99.14
PF14495	135	Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC	99.12
COG2010	150	CccA Cytochrome c, mono- and diheme variants [Ener	99.1
COG3474	135	Cytochrome c2 [Energy production and conversion]	99.08
COG3245	126	CycB Cytochrome c5 [Energy production and conversi	98.7
PRK14487	217	cbb3-type cytochrome c oxidase subunit II; Provisi	98.32
COG4654	110	Cytochrome c551/c552 [Energy production and conver	98.09
TIGR03791	291	TTQ_mauG tryptophan tryptophylquinone biosynthesis	97.58
PRK14486	294	putative bifunctional cbb3-type cytochrome c oxida	97.51
PF09098	167	Dehyd-heme_bind: Quinohemoprotein amine dehydrogen	97.41
TIGR03806	317	chp_HNE_0200 conserved hypothetical protein, HNE_0	97.37
TIGR00781	232	ccoO cytochrome c oxidase, cbb3-type, subunit II.	97.36
PF09086	98	DUF1924: Domain of unknown function (DUF1924); Int	96.89
PF02433	226	FixO: Cytochrome C oxidase, mono-heme subunit/FixO	96.62
PF10643	233	Cytochrome-c551: Photosystem P840 reaction-centre	96.38
PF14376	137	Haem_bd: Haem-binding domain	96.22
COG2857	250	CYT1 Cytochrome c1 [Energy production and conversi	96.14
PF02167	219	Cytochrom_C1: Cytochrome C1 family; InterPro: IPR0	95.92
TIGR02162	386	torC trimethylamine-N-oxide reductase c-type cytoc	95.75
COG3748	407	Predicted membrane protein [Function unknown]	95.57
KOG3453	110	consensus Cytochrome c [Energy production and conv	95.1
PRK14485	712	putative bifunctional cbb3-type cytochrome c oxida	95.06
PRK15032	390	trimethylamine N-oxide reductase cytochrome c-type	95.06
COG2993	227	CcoO Cbb3-type cytochrome oxidase, cytochrome c su	94.11
PF09626	120	DHC: Dihaem cytochrome c; InterPro: IPR018588 Diha	93.71
PF07635	59	PSCyt1: Planctomycete cytochrome C; InterPro: IPR0	90.19
COG1858	364	MauG Cytochrome c peroxidase [Inorganic ion transp	89.32
PF06537	499	DUF1111: Protein of unknown function (DUF1111); In	88.71
KOG3052	311	consensus Cytochrome c1 [Energy production and con	86.8
PF03150	159	CCP_MauG: Di-haem cytochrome c peroxidase; InterPr	86.76
COG3488	481	Predicted thiol oxidoreductase [Energy production	86.22
COG3258	293	Cytochrome c [Energy production and conversion]	84.88
TIGR03791	291	TTQ_mauG tryptophan tryptophylquinone biosynthesis	80.91

>PRK13697 cytochrome c6; Provisional

Probab=99.82  E-value=7.5e-20  Score=132.35  Aligned_cols=90  Identities=34%  Similarity=0.622  Sum_probs=72.1

Q ss_pred             cCchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           64 LAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGAR  143 (172)
Q Consensus        64 ~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~  143 (172)
                      .+.+++...|+++|..+|++||+.+......++.+..+.+..++..+.+.+.+.+++|...||+|.            ..
T Consensus        22 ~~~a~~~~~G~~ly~~~C~~CHg~g~~~~~~~p~l~~~~~~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~   89 (111)
T PRK13697         22 PALAADAANGEQVFSANCASCHAGGKNLVNAGKTLKKADLEKYGMYSLEAITAQVTNGKNAMPAFK------------DR   89 (111)
T ss_pred             cccccCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHhcCCCCHHHHHHHHHcCCCCCCCCc------------CC
Confidence            334467889999999999999996543333344444456666666678899999999999999997            68


Q ss_pred             CCHHHHHHHHHHHHhhhhCCCC
Q 030717          144 LQDEDIKLLAQFVKSQADQGWP  165 (172)
Q Consensus       144 Lsd~ei~~VaaYl~~~~~~gw~  165 (172)
                      ||++|+++|++||.++.++||.
T Consensus        90 ls~~di~~l~~Yi~~~~~~~~~  111 (111)
T PRK13697         90 LSPDQIEDVAAYVLEQAEKGWK  111 (111)
T ss_pred             CCHHHHHHHHHHHHHHHHccCC
Confidence            9999999999999999999994

>CHL00183 petJ cytochrome c553; Provisional

Probab=99.79  E-value=7.5e-19  Score=126.93  Aligned_cols=92  Identities=40%  Similarity=0.685  Sum_probs=70.5

Q ss_pred             ccccCchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 030717           61 AVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTF  140 (172)
Q Consensus        61 a~~~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~  140 (172)
                      .+.++..++++.|++||..+|++||+.+.....+......+.+...+..+.+.+...+++|.+.||+|+           
T Consensus        17 ~~~~~~~a~~~~G~~ly~~~Ca~CHg~g~~~~~P~~~~~~~~l~~~~~~~~~~i~~~i~~G~~~MP~f~-----------   85 (108)
T CHL00183         17 FSQPAFAADLDNGEQIFSANCAACHAGGNNVIMPEKTLKKDALEANSMNSIEAITYQVTNGKNAMPAFG-----------   85 (108)
T ss_pred             cCCccccccHHHHHHHHHHHHHHHCCCCCCCCCCCcccCHHHHhhCcCCCHHHHHHHHHcCcccccccc-----------
Confidence            444556677899999999999999996433222221112334444445578899999999999999997           


Q ss_pred             CCCCCHHHHHHHHHHHHhhhhCCC
Q 030717          141 GARLQDEDIKLLAQFVKSQADQGW  164 (172)
Q Consensus       141 ~~~Lsd~ei~~VaaYl~~~~~~gw  164 (172)
                       ..||++|+++|++||.++..++|
T Consensus        86 -~~Ls~~ei~~i~aYi~~~~~~~~  108 (108)
T CHL00183         86 -GRLSDEDIEDVANYVLSQAEKGW  108 (108)
T ss_pred             -CCCCHHHHHHHHHHHHHhhhcCC
Confidence             78999999999999999999998

>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A

Probab=99.55  E-value=6.5e-15  Score=97.31  Aligned_cols=67  Identities=40%  Similarity=0.769  Sum_probs=53.3

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDE  147 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~  147 (172)
                      ++++.|+.||+.+|++||+.++.+    +.+....      ++.+.|...+.+|.+.||+|.            ..||++
T Consensus         1 a~~~~G~~ly~~~C~~CH~~~~~g----p~l~~~~------~~~~~l~~~i~~g~~~Mp~~~------------~~ls~~   58 (67)
T PF13442_consen    1 ADAAKGKALYEQNCASCHGPGGAG----PSLAGKD------WSPEELYNIIRNGRGGMPPFG------------GQLSDE   58 (67)
T ss_dssp             -HHHHHHHHHHHHTHHHHGTGSSS----STSTHHH------HHHHHHHHHHHHTBTTBSCTT------------TTSTHH
T ss_pred             CcHHHHHHHHHhHhHHhcCCCccC----ccchhhh------hhHHHHHHHHHhCcCCCCCCC------------CCCCHH
Confidence            367899999999999999955442    2222112      246889999999999999997            689999


Q ss_pred             HHHHHHHHH
Q 030717          148 DIKLLAQFV  156 (172)
Q Consensus       148 ei~~VaaYl  156 (172)
                      |+++|++||
T Consensus        59 e~~~l~~yi   67 (67)
T PF13442_consen   59 EIEALAAYI   67 (67)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHC
Confidence            999999997

...

>TIGR03872 cytochrome_MoxG cytochrome c(L), periplasmic

Probab=99.54  E-value=5.4e-14  Score=105.54  Aligned_cols=110  Identities=17%  Similarity=0.208  Sum_probs=71.3

Q ss_pred             cccccchh-hhHHHHHHHhHHHHhhhhcccccCchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC-CCCH
Q 030717           34 LSMELELQ-KYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG-VDTE  111 (172)
Q Consensus        34 ~~~~~~~~-~mr~l~~l~~~l~~~~~~~a~~~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~-~~~~  111 (172)
                      .|+++... .++...+........   ..+-......++.|+++|+.+|++|||.++.+.. ++.+ ....+.+. ....
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~---~np~~~~~~~~a~G~~ly~~~CAaCHG~~g~G~~-gP~L-~~~~~~~~~~~~~   84 (133)
T TIGR03872        10 EPLDLSGAKEGRDTPAVKQFLETG---ENPYNEDAEALKKGESLFATACSGCHGHLAEGKL-GPGL-NDDYWTYPKNTTD   84 (133)
T ss_pred             CccCCCcchhhhhhHHHHHHHhCC---cccccCCHHHHHHHHHHHHHhhHHhCCCCCCCCC-CCCC-cCcccccCCcccH
Confidence            56666654 666544333222221   1222233556789999999999999998877532 2222 11222221 1245


Q ss_pred             HHHHHHHHhCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          112 DEIYHVTYFGKG-RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       112 ~~l~~~i~~g~~-~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                      +.+++.+..|.. .||+|.            ..|+++||++|++||+++.
T Consensus        85 ~~l~~~i~~G~~g~Mp~~~------------~~LsdeeI~aLaaYI~sl~  122 (133)
T TIGR03872        85 KGLFETIFGGANGMMGPQY------------GNLTLDEMLQIMAWIRHLY  122 (133)
T ss_pred             HHHHHHHHcCCCCCCcccc------------cCCCHHHHHHHHHHHHHhC
Confidence            568888888854 799997            7899999999999999985

This model describes a periplasmic c-type cytochrome that serves as the primary electron acceptor for the quinoprotein methanol dehydrogenase, a PQQ enzyme. The member from Paracoccus denitrificans is also characterized as an electron acceptor for methylamine dehydrogenase, a tryptophan tryptophylquinone enzyme. This protein is called cytochrome c(L) in methylotrophic bacteria such Methylobacterium extorquens, but c551i in Paracoccus denitrificans.

>PRK13621 psbV cytochrome c-550; Provisional

Probab=99.54  E-value=3.5e-14  Score=109.54  Aligned_cols=101  Identities=26%  Similarity=0.458  Sum_probs=72.2

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQ  145 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Ls  145 (172)
                      .+.++..|+++|+.+|++||..+++.+.++.++...+|.+. ....+.+...+..+++.|+..+..+...+.......||
T Consensus        62 s~~d~~~G~~lF~~~Ca~CH~gG~n~v~p~ktL~~~~L~~a-~p~rd~I~~LV~~iknPms~kg~~~~~~~~mps~~~LS  140 (170)
T PRK13621         62 SPEQLTDGKQLFDSNCLNCHVGGATLPNPNVSLSLKDLRGA-TPPRDNIAALVAYQRDPMSYDGSEESYGCRQVPEDWMT  140 (170)
T ss_pred             CHHHHHhHHHHHHHHHHHhccCCCCCcCCCCCCCHHHHhcC-CCchHHHHHHHHHhhCCCCCCcccccccccCCccCCCC
Confidence            35678999999999999999988888888999989999877 33455555555555555554321110010001126799


Q ss_pred             HHHHHHHHHHHHhhhh--CCCCCc
Q 030717          146 DEDIKLLAQFVKSQAD--QGWPKI  167 (172)
Q Consensus       146 d~ei~~VaaYl~~~~~--~gw~~~  167 (172)
                      ++|+++|++||..++.  .+|.+-
T Consensus       141 deEL~aIAaYLL~qA~~~~~Wg~~  164 (170)
T PRK13621        141 DEELQNLAAFILRAAQKAPGWGTE  164 (170)
T ss_pred             HHHHHHHHHHHHhhhhhccCCCCc
Confidence            9999999999999874  899864

>COG3258 Cytochrome c [Energy production and conversion]

Probab=99.50  E-value=7.9e-14  Score=113.60  Aligned_cols=127  Identities=19%  Similarity=0.191  Sum_probs=83.0

Q ss_pred             cccccchhhhHHHHHHHhHHHHhhh---------hccc-ccCchhhHHhHHHHHHccCccccCCCCCCCCC----CCCcc
Q 030717           34 LSMELELQKYDTYNVLCLPVSLGFF---------HAAV-SLAQTVDIQKGVSLFRQACIGCHDGGGNVIQP----GATLF   99 (172)
Q Consensus        34 ~~~~~~~~~mr~l~~l~~~l~~~~~---------~~a~-~~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~----~~~~~   99 (172)
                      +|++..+.+|+-+.....-+.....         .... ....++|+.+|++||+.+|+.|||++|.|...    +....
T Consensus       116 k~~paDspEmkAmlaY~kWL~~~~~v~~kl~g~g~~kva~~~~aadp~rG~kly~eqCa~CHg~~G~G~k~~~~~~~~y~  195 (293)
T COG3258         116 KPLPADSPEMKAMLAYMKWLKEQAPVGVKLPGRGYPKVAPPLKAADPVRGKKLYAEQCAACHGADGQGLKNDDEQGAGYL  195 (293)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhcCCcccccCCCCCCccCccccCCCchhHHHHHHHHHHHhcCCCCCccccCcCCCccee
Confidence            7778888888866555444433211         1111 22335689999999999999999999887654    66778


Q ss_pred             chhhhcCCCCC----HHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCCCCCcC
Q 030717          100 LKDLQRNGVDT----EDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIE  168 (172)
Q Consensus       100 ~p~l~~~~~~~----~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw~~~~  168 (172)
                      +|.||+..+.+    ...+.....+=+..||--.        -.....|||+|.+||++|+.++..+.-|++-
T Consensus       196 fPpLwG~dSfn~GagMari~t~A~Fi~~nMP~g~--------~~~~P~Lsd~dA~DiAay~~~~pRp~~pgl~  260 (293)
T COG3258         196 FPPLWGPDSFNDGAGMARINTLARFIKANMPYGF--------SGTNPILSDQDAWDIAAYVNSQPRPEGPGLV  260 (293)
T ss_pred             cCcccCCcccCCccchhhHHHHHHHHHhcCCCCc--------CccCCccChHHHHHHHHHHcCCCCCCCCCcc
Confidence            99999864332    2222222233345787432        1112459999999999999999766555543

>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2

Probab=99.49  E-value=1.3e-13  Score=105.39  Aligned_cols=89  Identities=28%  Similarity=0.462  Sum_probs=67.3

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCC--CCHHHHHHHHHhCCC----------CCCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGV--DTEDEIYHVTYFGKG----------RMPGFGEKCT  133 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~--~~~~~l~~~i~~g~~----------~MP~~~~~~~  133 (172)
                      .+.++.+|++||+.+|++||+.+++.+.++.++...+|.+...  ...+.|.+.++++..          .||++     
T Consensus        51 s~~d~~~G~~lF~~~Ca~CH~gG~n~~~p~~~L~~~~L~~atp~Rd~I~~Lv~~iknP~s~kG~~~~~~~~mp~~-----  125 (155)
T TIGR03046        51 TPEQLTDGKNLFESNCLNCHVGGATLPNPNVSLSLKDLKGATPPRDTIQSLVAYQRDPMSYDGSEESYGCRPVPE-----  125 (155)
T ss_pred             CHHHHHhHHHHHHHHHHHhccCCCCCcCCCCCCCHHHHhcCCCchHHHHHHHHHhhCCcccCcccccccccCCcc-----
Confidence            3568999999999999999998888788888888888876531  123445555544321          34554     


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhhh--hCCCCCc
Q 030717          134 PRGQCTFGARLQDEDIKLLAQFVKSQA--DQGWPKI  167 (172)
Q Consensus       134 ~~~~~~~~~~Lsd~ei~~VaaYl~~~~--~~gw~~~  167 (172)
                              ..|||+|+++|++||..++  ..+|.+-
T Consensus       126 --------~~LsdeEL~aIAaYLl~qa~~~~~Wg~~  153 (155)
T TIGR03046       126 --------DWMDDEEVENLAAFILRAAQKAPGWGVE  153 (155)
T ss_pred             --------cCCCHHHHHHHHHHHHHhhhhcCCCCCC
Confidence                    5799999999999999987  8899763

Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.

>CHL00133 psbV photosystem II cytochrome c550; Validated

Probab=99.46  E-value=6e-13  Score=102.62  Aligned_cols=88  Identities=23%  Similarity=0.352  Sum_probs=65.2

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC--CCCHHHHHHHHHhCCC------------------CCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG--VDTEDEIYHVTYFGKG------------------RMPG  127 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~--~~~~~~l~~~i~~g~~------------------~MP~  127 (172)
                      +++++|+++|+.+|+.||..+....++...+..+.|...+  ..+.+.|+..|+++..                  .||+
T Consensus        50 ~~~~~Gk~lF~~~CaaCH~~G~~~~~p~vgl~l~~L~~A~~~r~~~~~Lv~~iknP~~ydg~~~i~~~~~~~K~~~~MPa  129 (163)
T CHL00133         50 EQVKRGKRLFNASCGACHVGGITKTNPNVGLDPEALSLATPPRDNIEALVDYMKNPTTYDGLESIAEIHPSIKSADIFPK  129 (163)
T ss_pred             HHHHHHHHHHHhhHHHhCCCCCCCCCCCCCCCHHHHhhcCCCcccHHHHHHHHhCcccccchHHHHHhhcccCccccCCC
Confidence            4688999999999999997554444444455556665432  3467788888777521                  4999


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCCCCcC
Q 030717          128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGWPKIE  168 (172)
Q Consensus       128 ~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw~~~~  168 (172)
                      |             +.|||+|+.+|++||..+.   ..+|.+.+
T Consensus       130 ~-------------~~LsdeEL~aVAaYIl~q~~~~~~~wgggk  160 (163)
T CHL00133        130 M-------------RSLTDEDLYAIAGHILLQPKIVSEKWGGGK  160 (163)
T ss_pred             C-------------CCCCHHHHHHHHHHHHhcccccccccCCCc
Confidence            9             5799999999999999764   77898753

>TIGR03874 4cys_cytochr c-type cytochrome, methanol metabolism-related

Probab=99.44  E-value=3.6e-13  Score=101.86  Aligned_cols=79  Identities=19%  Similarity=0.305  Sum_probs=61.7

Q ss_pred             HHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC-CCCCHHHHHHHHHhCCC--------CCCCCCCCCCCCCCCCC
Q 030717           70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN-GVDTEDEIYHVTYFGKG--------RMPGFGEKCTPRGQCTF  140 (172)
Q Consensus        70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~-~~~~~~~l~~~i~~g~~--------~MP~~~~~~~~~~~~~~  140 (172)
                      .-.|++||..+|++|||.+|.|...     .|.|... ...+...++++|.+|+.        .||+|.           
T Consensus        33 ~~~G~~lY~~~CAaCHG~dG~G~~~-----~P~Lans~v~~s~~nli~vIl~G~~~~~~~~~~~MPaF~-----------   96 (143)
T TIGR03874        33 TYSGYRRYHSECHVCHGPDGMGSTY-----APALKDSVKRMSYGDFLGVVANGRQNVSAAQNNVMPAFG-----------   96 (143)
T ss_pred             cccHHHHHHHHHHHhCCCCCCCCCC-----CCCCCCccccCCHHHHHHHHHhCCCCCCCCCCCCCCCcc-----------
Confidence            4579999999999999999886442     3443311 11478899999999976        599998           


Q ss_pred             CCCCCHH-HHHHHHHHHHhhh----hCCCC
Q 030717          141 GARLQDE-DIKLLAQFVKSQA----DQGWP  165 (172)
Q Consensus       141 ~~~Lsd~-ei~~VaaYl~~~~----~~gw~  165 (172)
                       ..|+|+ ||.+|+.||+..+    .+|.|
T Consensus        97 -~~LsD~~eIa~L~~YLR~~~~g~~~~~~p  125 (143)
T TIGR03874        97 -DNPNVMCYLDDLYVYLRARGTDALGRGRP  125 (143)
T ss_pred             -ccCCcHHHHHHHHHHHHhccCCCcCCCCC
Confidence             789997 9999999999876    44555

This family represents a c-type cytochrome related to (but excluding) cytochrome c-555 of Methylococcus capsulatus. Members contain four invariant Cys residues, including two from a heme-binding motif shared with c-555, and two others.

>TIGR03045 PS_II_C550 cytochrome c-550

Probab=99.42  E-value=1.5e-12  Score=100.29  Aligned_cols=88  Identities=25%  Similarity=0.372  Sum_probs=65.6

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCC------------------CCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGK------------------GRMP  126 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~------------------~~MP  126 (172)
                      .+++++|+++|+.+|++||..+....++...+..+.+...  ...+.+.|+..++++.                  ..||
T Consensus        48 ~~~~~~Gk~lF~~~Ca~CH~~G~~~~~p~vgl~l~~L~~A~~~r~~v~~Lv~~iknP~~~dg~~~~~~~hp~~k~~~~mP  127 (159)
T TIGR03045        48 EEQVKRGKRLFNTACGTCHVGGITKTNPNVGLDPEALALATPPRDNVEALVDYMKNPTSYDGEESIAELHPSIRSADIFP  127 (159)
T ss_pred             hHhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhhHHhcCCCccCHHHHHHHHhCcccccccchhhhcccccCcccccC
Confidence            4578999999999999999755454455555556666654  2456888999888773                  1477


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh--hC-CCCCc
Q 030717          127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA--DQ-GWPKI  167 (172)
Q Consensus       127 ~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~--~~-gw~~~  167 (172)
                      .+             +.||++|+.+|++||..++  .. .|.+.
T Consensus       128 ~~-------------~~LsdeEL~avAaYIl~q~~~~~~~wgg~  158 (159)
T TIGR03045       128 KM-------------RNLTDEDLRLIAGHILVQPKVVGEKWGGG  158 (159)
T ss_pred             Cc-------------CCCCHHHHHHHHHHHHHhcccccccCCCC
Confidence            76             5799999999999999986  33 48764

Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.

>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III

Probab=99.40  E-value=2.4e-12  Score=107.68  Aligned_cols=102  Identities=27%  Similarity=0.371  Sum_probs=71.6

Q ss_pred             cchhhhHHHHHHHhHHHHhhhhcccccCchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhh----cCCCCCHHH
Q 030717           38 LELQKYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQ----RNGVDTEDE  113 (172)
Q Consensus        38 ~~~~~mr~l~~l~~~l~~~~~~~a~~~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~----~~~~~~~~~  113 (172)
                      ++..+++.+...+..+..      .....+..+++|+.||..+|++|||.+|.+....   ..|+|.    .++. +...
T Consensus       177 LsdeeI~aVaaYv~sl~~------~~~~~~~~~~~G~~lf~~~Ca~CHG~~G~G~~~~---gaP~L~~~~~~y~~-~~~~  246 (285)
T TIGR00782       177 LEEADIKDVASYVMSLSS------GKPKDEALAAKGQELFADNCTTCHGEDGKGLQEL---GAPNLTDDVWLYGG-DLKT  246 (285)
T ss_pred             cChHHHHHHHHHHHHhcc------CCccchhHHHHHHHHHhccchhhCCCCCCCCCCC---CCCCCCcchhhcCC-CHHH
Confidence            555666665555444332      1122334578999999999999999988764321   134444    2322 4778


Q ss_pred             HHHHHHhCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717          114 IYHVTYFGKG-RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       114 l~~~i~~g~~-~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~  161 (172)
                      +.+.+++|+. .||+|.            ..||++||++|++||.++..
T Consensus       247 i~~~i~~G~~g~Mp~~~------------~~Ls~~ei~~La~Yv~sL~~  283 (285)
T TIGR00782       247 ITTTITNGRGGVMPAWG------------PRLSEAQIKALAAYVHSLGG  283 (285)
T ss_pred             HHHHHHhCCCCCCCCcc------------ccCCHHHHHHHHHHHHHhcC
Confidence            8888999864 899997            78999999999999999853

This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.

>PRK13622 psbV cytochrome c-550; Provisional

Probab=99.39  E-value=1.6e-12  Score=101.48  Aligned_cols=98  Identities=30%  Similarity=0.443  Sum_probs=70.4

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCC---------CCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKG---------RMPGFGEKCTPR  135 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~---------~MP~~~~~~~~~  135 (172)
                      .+++.+|+++|..+|++||+.+++.+.+..++...++.+.  +..+.+.|+..++++..         .||...      
T Consensus        59 ~~~~~~G~~lF~~~Ca~CH~~G~ni~~P~~tLk~~aL~~a~p~rdnv~AIv~yLk~p~tYdg~~~~~e~~p~~~------  132 (180)
T PRK13622         59 EAQLAKGKKLFNRACAQCHVGGQTYPNPDVSLKLSDLEGATPPRDNVLAIVDYIKNPVTYDGVESLLEYHPNTQ------  132 (180)
T ss_pred             HHHHHHHHHHHHhhhHHhccCCCCCcCCCcccCHHHHcCCCCCcccHHHHHHHHhcccccCCccchhhccccch------
Confidence            3467899999999999999887777777777777777643  45567888888877641         133311      


Q ss_pred             CCCCCC--CCCCHHHHHHHHHHHHhhhh--CCCCCcCCC
Q 030717          136 GQCTFG--ARLQDEDIKLLAQFVKSQAD--QGWPKIESM  170 (172)
Q Consensus       136 ~~~~~~--~~Lsd~ei~~VaaYl~~~~~--~gw~~~~~~  170 (172)
                      -.-.+.  +.|||+||.+|+.||..++.  ++|...++.
T Consensus       133 ~~~~~p~~~~LsdeEI~~VA~yIl~qa~~~~~Wg~~k~~  171 (180)
T PRK13622        133 LLSEYPRLRNLTDEDLKLIAGYILVQAKTVPGWGGTKNE  171 (180)
T ss_pred             hccccccccCCCHHHHHHHHHHHHhCcccCCccCCCCCC
Confidence            000000  47999999999999999986  899876653

>PRK13617 psbV cytochrome c-550; Provisional

Probab=99.37  E-value=5.2e-12  Score=97.73  Aligned_cols=87  Identities=23%  Similarity=0.382  Sum_probs=66.8

Q ss_pred             hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhC---C---------C------CCCCC
Q 030717           69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFG---K---------G------RMPGF  128 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g---~---------~------~MP~~  128 (172)
                      ++.+|+++|+.+|..||..++...++...+....|...  -..+.+.|+..++++   +         .      .||.+
T Consensus        58 ~~~~G~~~F~~~C~~CH~~g~T~~n~~vg~dL~~L~aa~p~r~nv~aLv~yikdP~sydg~~s~~e~~P~~~~~~imP~~  137 (170)
T PRK13617         58 EIKAGRKVFNTSCGTCHAGGITKTNQNVGLDPETLALATPARDNVDALVDYLKDPTSYDGEYSIADLHPSMRSADLYPAM  137 (170)
T ss_pred             HHHHHHHHHHcchhhhccCCCcCCCCCcCCCHHHHhccCCCCCCHHHHHHHHhChHhhcchhhccccCccccccccCccc
Confidence            57899999999999999877765555555556666432  235789999999887   2         1      57777


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCCCCcC
Q 030717          129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGWPKIE  168 (172)
Q Consensus       129 ~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw~~~~  168 (172)
                                   +.|||+|+++|++||..+.   .++|.+.+
T Consensus       138 -------------~~LsdeeL~alAayLl~~~k~~~~~wgggk  167 (170)
T PRK13617        138 -------------RDLNDEDLRLMAGYILVAPKVQGTQWGGGK  167 (170)
T ss_pred             -------------CCCCHHHHHHHHHHHHhcccccccccCCce
Confidence                         5799999999999999983   67898653

>COG2863 Cytochrome c553 [Energy production and conversion]

Probab=99.36  E-value=1e-12  Score=96.53  Aligned_cols=80  Identities=28%  Similarity=0.314  Sum_probs=61.6

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHH---HhCCC---CCCCCCCCCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT---YFGKG---RMPGFGEKCTPRGQCT  139 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i---~~g~~---~MP~~~~~~~~~~~~~  139 (172)
                      ...+++.|+.+|.+.|++|||.+|++..    ..+|.|.+.   +.++|++.+   +.|.+   .|-+..          
T Consensus        20 a~~~a~~G~~~~~~~Ca~CHG~~g~~~~----~~~P~Lagq---~~~yl~~~L~a~k~g~r~~~vM~~~a----------   82 (121)
T COG2863          20 AAADAALGKALAAQSCAACHGADGNSPA----PGYPKLAGQ---SEAYLEKQLKAYKDGKRPGPVMNAIA----------   82 (121)
T ss_pred             hhhhHHHHHHhhcchhhhccCCCCCCcc----CCCCCcCCC---CHHHHHHHHHHHHcCCCCcchHHHHH----------
Confidence            5678899999998789999999988533    337888765   677777644   45543   577776          


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-hCCC
Q 030717          140 FGARLQDEDIKLLAQFVKSQA-DQGW  164 (172)
Q Consensus       140 ~~~~Lsd~ei~~VaaYl~~~~-~~gw  164 (172)
                        ..|||+||.+|++|+.+++ ..+|
T Consensus        83 --~~LsD~Di~~lAa~~a~~~~~~~~  106 (121)
T COG2863          83 --SGLSDEDIADLAAYYAAQKASAPE  106 (121)
T ss_pred             --HhCCHHHHHHHHHHHHhCCCCCCC
Confidence              7899999999999999985 3344

>PRK13618 psbV cytochrome c-550; Provisional

Probab=99.35  E-value=5.5e-12  Score=97.35  Aligned_cols=87  Identities=21%  Similarity=0.320  Sum_probs=62.6

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC--CCCHHHHHHHHHhCCC------------------CCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG--VDTEDEIYHVTYFGKG------------------RMPG  127 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~--~~~~~~l~~~i~~g~~------------------~MP~  127 (172)
                      +++++|+++|+.+|++||..+....++......+.+.+..  ..+.+.+...++++..                  .||.
T Consensus        50 ~~~~~G~~lF~~~Ca~CH~~G~~~~~p~~~l~~~~La~a~p~rd~v~~l~~yik~P~~~Dg~~~~~~~h~~ik~~~~mP~  129 (163)
T PRK13618         50 KQVKEGKRLFNYACAQCHAGGVTKTNQNVGLEPEALALATPNRDNIEGLVDYMKNPTTYDGEEEISEIHPSIKSADIFTA  129 (163)
T ss_pred             hhHHHHHHHHHHHHHHhcCCCCCCCCCCcCCChhhhccCCCCccCHHHHHHHHhCchhccccchhcccccccCccccCCC
Confidence            4789999999999999996443444443344445555432  2367888887755521                  5777


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCCCCc
Q 030717          128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGWPKI  167 (172)
Q Consensus       128 ~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw~~~  167 (172)
                      +             +.|||+|+.+|++||..+.   .++|.+.
T Consensus       130 ~-------------~~Lsd~eL~ava~yll~~~~~~~~~wggg  159 (163)
T PRK13618        130 M-------------RNLTDKDLEAIAGHILVQPKILGDKWGGG  159 (163)
T ss_pred             C-------------CCCCHHHHHHHHHHHHhccCCcccccCCc
Confidence            7             5799999999999999875   6788765

>PRK13619 psbV cytochrome c-550; Provisional

Probab=99.35  E-value=3.5e-12  Score=97.21  Aligned_cols=87  Identities=22%  Similarity=0.363  Sum_probs=71.1

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC--CCCHHHHHHHHHhCCC------------------CCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG--VDTEDEIYHVTYFGKG------------------RMP  126 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~--~~~~~~l~~~i~~g~~------------------~MP  126 (172)
                      .+++.+|++||+.+|+.||..+++.+++...+...+|.+..  ..+.+.|+..++++..                  .||
T Consensus        48 ~~d~~~GkklF~~~Ca~CH~gG~nk~~Pnl~L~~~~L~~atP~RdnV~aLVdymk~PtsyDG~~~~a~~hpsi~~~di~P  127 (160)
T PRK13619         48 SKQITNGQRLFVQECTQCHLQGKTKTNNNVSLGLEDLAGAEPPRDNVLALVDYLKHPTSYDGEDDYSELHPNVSRPDIFP  127 (160)
T ss_pred             HHHHHHHHHHHHHHHHHcccCCCCCcCCCCCcCHHHHHhcCCCcccHHHHHHHHhCCcccccchhhhhhccccccccccc
Confidence            45789999999999999999888888888888888888753  5678888888877632                  466


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh--hCCCCC
Q 030717          127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA--DQGWPK  166 (172)
Q Consensus       127 ~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~--~~gw~~  166 (172)
                      .+             +.|||+|+.+|+.||..++  ..+|.+
T Consensus       128 ~m-------------r~LtdedL~~iAg~IL~~pk~~~~WGG  156 (160)
T PRK13619        128 EL-------------RNFTEDDLYDVAGYMLVAPKLDERWGG  156 (160)
T ss_pred             cc-------------CCCCHHHHHHHHHHHHhccccccccCC
Confidence            65             5799999999999998764  668875

>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional

Probab=99.29  E-value=8.6e-12  Score=104.81  Aligned_cols=79  Identities=25%  Similarity=0.468  Sum_probs=58.9

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCC--CCCCCCCCCCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKG--RMPGFGEKCTPRGQCTFGARL  144 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~--~MP~~~~~~~~~~~~~~~~~L  144 (172)
                      ..++.+|+++|+.+|++|||.+|.+... .   .+.+...+....+.+++.+.+|..  .||+|+            ..|
T Consensus       212 ~~~~~~G~~ly~~~Ca~CHg~~g~G~~g-p---~p~~~~~~~~~~~~~~~~I~~G~~~~~MP~f~------------~~L  275 (294)
T PRK14486        212 VAAIAKGKALYDANCAACHGDEAQGQEG-V---ALNDIDDGDLPDAAYFGMIKGGSDAKGMPGFG------------GDL  275 (294)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCC-C---CccccccCCCcHHHHHHHHHcCCCcCCCCccc------------ccC
Confidence            4567899999999999999988775322 1   122222222245667888898876  699997            679


Q ss_pred             CHHHHHHHHHHHHhhhh
Q 030717          145 QDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       145 sd~ei~~VaaYl~~~~~  161 (172)
                      |++|+++|++||+++..
T Consensus       276 sdeei~~LaaYV~sl~~  292 (294)
T PRK14486        276 SDDDIWAIVAYIRSQKA  292 (294)
T ss_pred             CHHHHHHHHHHHHhccC
Confidence            99999999999999854

>PTZ00405 cytochrome c; Provisional

Probab=99.25  E-value=2e-11  Score=89.30  Aligned_cols=88  Identities=17%  Similarity=0.187  Sum_probs=56.6

Q ss_pred             CchhhHHhHHHHHHccCccccCCCCCC-CCCCCCccc---------hh------hhcC-CCCCHHHHHHHHHhCCCCCCC
Q 030717           65 AQTVDIQKGVSLFRQACIGCHDGGGNV-IQPGATLFL---------KD------LQRN-GVDTEDEIYHVTYFGKGRMPG  127 (172)
Q Consensus        65 a~~~d~~~G~~lf~~~C~~CHg~~g~~-~~~~~~~~~---------p~------l~~~-~~~~~~~l~~~i~~g~~~MP~  127 (172)
                      ...+|+++|+++|..+|.+||.....+ ...|+.+..         +.      +... ..|+.+.|...+.++...+|+
T Consensus         9 ~~~gd~~~G~~lF~~~C~aCH~~~~~~~~~vGP~L~gv~gR~~g~~~~~~YS~al~~~g~~wd~~~L~~~l~~P~~~~pg   88 (114)
T PTZ00405          9 LPPGDAERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRKSGTVEGFAYSKANADSGVIWTPEVLDVYLENPKKFMPG   88 (114)
T ss_pred             CCccCHHHHHHHHHhhhHhhCCCCCCCCCCcCCCccccccCccccccCccccHHHHhccCcCCHHHHHHHHHCHHhhCCC
Confidence            345788999999988899999743211 112222110         00      0111 137899999999998776663


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       128 ~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                      -.|        .|.+..+++|+.+|++||.++.
T Consensus        89 t~M--------~f~gl~~~~dr~~liaYL~sl~  113 (114)
T PTZ00405         89 TKM--------SFAGIKKPQERADVIAYLETLK  113 (114)
T ss_pred             CCC--------CCCCCCCHHHHHHHHHHHHHhc
Confidence            321        1125678999999999999875

>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III

Probab=99.25  E-value=1.9e-11  Score=102.19  Aligned_cols=74  Identities=34%  Similarity=0.575  Sum_probs=59.2

Q ss_pred             HHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC---CCCHHHHHHHHHhCC----------CCCCCCCCCCCCCC
Q 030717           70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG---VDTEDEIYHVTYFGK----------GRMPGFGEKCTPRG  136 (172)
Q Consensus        70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~---~~~~~~l~~~i~~g~----------~~MP~~~~~~~~~~  136 (172)
                      ...|++||..+|++|||.++.+.. +    +|+|.+..   ..+.+.+...+++|.          +.||+|.       
T Consensus       107 ~~~G~~lf~~~Ca~CHG~~g~G~~-g----~P~L~~~~~~~g~~~~~i~~~i~~G~~~~~~~~~~~~~Mp~~~-------  174 (285)
T TIGR00782       107 RNAGAAIFRTWCAQCHGSGAGGAK-G----FPNLLDNDWLWGGTLEGIHTTIKHGIRDPDDGDTYVGEMPAFG-------  174 (285)
T ss_pred             HHHHHHHHHHHhHHhCCCCCCCCC-C----CCCCCCCccccCCCHHHHHHHHHhCccCcccCCcCCCCCCccc-------
Confidence            478999999999999998877532 2    35554321   126888999999996          4799997       


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          137 QCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       137 ~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                           ..||++||++|++||.++.
T Consensus       175 -----~~LsdeeI~aVaaYv~sl~  193 (285)
T TIGR00782       175 -----PLLEEADIKDVASYVMSLS  193 (285)
T ss_pred             -----cccChHHHHHHHHHHHHhc
Confidence                 7899999999999999986

This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.

>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues

Probab=99.18  E-value=2.9e-12  Score=86.93  Aligned_cols=75  Identities=31%  Similarity=0.338  Sum_probs=44.9

Q ss_pred             HHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC-CCCHHHHHHHHHh---------CC------CCCCCCCCCCC
Q 030717           70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG-VDTEDEIYHVTYF---------GK------GRMPGFGEKCT  133 (172)
Q Consensus        70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~-~~~~~~l~~~i~~---------g~------~~MP~~~~~~~  133 (172)
                      +++|++||..+|++||+.++.+...+.   .|+|++.. ......+...+.+         ..      ..||.+     
T Consensus         1 a~~G~~l~~~~C~~CH~~~~~~~~~~~---~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   72 (91)
T PF00034_consen    1 AARGKELFQANCAACHGADGNGDGGGP---GPDLTGIGKRYSYDWIGRYITNPEAISPPAHMPDAMPMFPMMPMP-----   72 (91)
T ss_dssp             HHHHHHHHHHHTTTTHBTSTTSSSSST---SHBHTTHTHHBTTHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred             ChhHHHHHhCcChhcCCCCCcCCcccc---CccccCccccchHHHHHHHHHHHhhhccccchhhccCcccCCccc-----
Confidence            478999998899999998876544332   34444321 0011111111110         00      134443     


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          134 PRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       134 ~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                              ..||++|+++|++||++++
T Consensus        73 --------~~ls~~e~~~l~ayl~slk   91 (91)
T PF00034_consen   73 --------KILSDEEIADLAAYLRSLK   91 (91)
T ss_dssp             --------HTSSHHHHHHHHHHHHHTS
T ss_pred             --------CCCCHHHHHHHHHHHHHhC
Confidence                    2699999999999999874

The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....

>TIGR02603 CxxCH_TIGR02603 putative heme-binding domain, Pirellula/Verrucomicrobium type

Probab=99.15  E-value=7.6e-11  Score=88.26  Aligned_cols=49  Identities=24%  Similarity=0.371  Sum_probs=34.1

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFG  121 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g  121 (172)
                      +|+++|+++|..+|++||+.+|.+...     .|+|.+.+..+.+.|.+.|.++
T Consensus         1 gd~~~G~~~f~~~C~~CH~~~g~g~~~-----gP~L~~~~~~~~~~ll~~I~~P   49 (133)
T TIGR02603         1 GDAEKGKAVYAQRCYVCHRIGGEGVDV-----GPDLTGVGTKGVEYLLEAILDP   49 (133)
T ss_pred             CCHHHHHHHHHhHHHHhCCCCCCCCcc-----CCCccccccCCHHHHHHHHhCc
Confidence            367899999988899999988764322     3555543334677777666554

This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).

>PTZ00048 cytochrome c; Provisional

Probab=99.14  E-value=2.2e-10  Score=83.97  Aligned_cols=86  Identities=21%  Similarity=0.332  Sum_probs=56.0

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCC-CCCCCCccc--------hh------hhc-CCCCCHHHHHHHHHhCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNV-IQPGATLFL--------KD------LQR-NGVDTEDEIYHVTYFGKGRMPGFGE  130 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~-~~~~~~~~~--------p~------l~~-~~~~~~~~l~~~i~~g~~~MP~~~~  130 (172)
                      .+++++|+++|.++|.+||..++.+ ...|+.+..        +.      +.. ...|+.+.|...+.++...+|.-.|
T Consensus        12 ~~~~~~G~~~f~~~C~~CH~~~~~g~~~~GP~L~Gi~gR~~g~~~~~ys~~~~~~g~~wt~~~L~~~l~~P~~~~pgt~M   91 (115)
T PTZ00048         12 EGDAKKGAKLFKAKCAQCHTINKGGAVKQGPNLHGFYGRKSGSADFPYSDANKNSGIVWSDKHLFEYLVNPKLYIPGTKM   91 (115)
T ss_pred             cccHHHHHHHHHhhhhhcCCCcCCCCCCcCCcccccccccccCCCCccchhhhhcccccCHHHHHHHHhCcCccCCCCcc
Confidence            4678899999988999999765322 111221111        00      000 1147889999999999887665431


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          131 KCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       131 ~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                              .|.+..+++|+.+|++||+++.
T Consensus        92 --------~~~gl~~~~~~~~liaYL~s~~  113 (115)
T PTZ00048         92 --------VFAGIKKEKERADLIAYLKEAS  113 (115)
T ss_pred             --------CcCCCCCHHHHHHHHHHHHHhc
Confidence                    1124557999999999999874

>PRK13620 psbV cytochrome c-550; Provisional

Probab=99.14  E-value=5.6e-10  Score=88.50  Aligned_cols=88  Identities=20%  Similarity=0.314  Sum_probs=62.7

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCC------------------CCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKG------------------RMPG  127 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~------------------~MP~  127 (172)
                      .++++|+++|+..|+.||..+....++...+....+...  ...+.+.|+..++++..                  .||.
T Consensus       102 eq~~~GkqLF~~~Ca~CHVgG~Tktnp~vgpdLt~LaaAtppRdn~e~Lv~wLkdP~sydg~~siae~HPs~~s~d~mP~  181 (215)
T PRK13620        102 KQVAEGKQLFAYACGQCHVGGITKTDPNVGLDPEALALATPPRDSVESLVDYLHNPTTYDGEREISELHPSTKSTDIFPK  181 (215)
T ss_pred             HHHHHHHHHHHhhhhhccCCCCCCCCCCCCCCHHHHhccCCCCCCHHHHHHHHhCccccCCcchhhhcCccccccccccc
Confidence            468899999999999999533243333333334444321  23578999999877632                  6888


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCCCCcC
Q 030717          128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGWPKIE  168 (172)
Q Consensus       128 ~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw~~~~  168 (172)
                      +             +.|||+|+.+|+.||.-+.   .+.|.+.+
T Consensus       182 ~-------------r~LtdedL~aIa~~IL~qpki~~~~WGGgk  212 (215)
T PRK13620        182 M-------------RNLTEDDLVAISGHILLQPKIVGTKWGGGK  212 (215)
T ss_pred             c-------------CCCCHHHHHHHHHHHhccccccccccCCce
Confidence            8             5799999999999999875   66887653

>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V

Probab=99.12  E-value=1.2e-10  Score=86.21  Aligned_cols=98  Identities=22%  Similarity=0.377  Sum_probs=69.3

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCC---------CCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKG---------RMPGFGEKCTPR  135 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~---------~MP~~~~~~~~~  135 (172)
                      ..++.+|++||+.+|+.||..+...+++...+...+|++.  ...+.+.|+..++++..         .-|...    .-
T Consensus        22 ~~q~~~GkrLF~~~C~~CH~GG~TktNpnV~L~le~L~~AtPpRDNi~~LVdYmk~PtsYDG~~~i~e~hp~~~----s~   97 (135)
T PF14495_consen   22 PEQLKRGKRLFNASCAQCHVGGITKTNPNVSLSLEDLAGATPPRDNIEALVDYMKNPTSYDGEESISELHPSIK----SA   97 (135)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGCBTTSTTSBSSHHHHHTSSS--SSHHHHHHHHHS-B-TTSSSBGTTTS-STT----CT
T ss_pred             HHHHHHHHHHHHHHHHhhccCCcccCCCCCCcCHHHHccCCCCcccHHHHHHHhhCCCCcCCchhHHHhCcCcc----cc
Confidence            4678999999999999999887777888888888888865  36689999999988732         223321    11


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhh--hCCCCCcC
Q 030717          136 GQCTFGARLQDEDIKLLAQFVKSQA--DQGWPKIE  168 (172)
Q Consensus       136 ~~~~~~~~Lsd~ei~~VaaYl~~~~--~~gw~~~~  168 (172)
                      ..|...+.|||+|+.+|+.||..++  ..+|.+-+
T Consensus        98 di~p~mr~ltdddL~~iAg~IL~~pk~~~~WGggk  132 (135)
T PF14495_consen   98 DIFPKMRNLTDDDLYAIAGYILRQPKVAGGWGGGK  132 (135)
T ss_dssp             TTSGGGTS--HHHHHHHHHHHHHHHHHHCGCCTCT
T ss_pred             hhhHhhcCCCHHHHHHHHHHHHhcccccCCcCCCc
Confidence            1122236799999999999999764  66698653

...

>COG2010 CccA Cytochrome c, mono- and diheme variants [Energy production and conversion]

Probab=99.10  E-value=1.3e-10  Score=87.39  Aligned_cols=78  Identities=27%  Similarity=0.398  Sum_probs=55.4

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHh----CCCCCCCCCCCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYF----GKGRMPGFGEKCTPRGQCTFGA  142 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~----g~~~MP~~~~~~~~~~~~~~~~  142 (172)
                      ..+...|+++|..+|+.|||.+..  ..+.....|.|++.   ..+.+...+.+    +...||.|+            .
T Consensus        48 ~~~~~~G~~~f~~~C~~CHg~~~~--g~~~~~~~~~l~~~---~~~~~~~~i~~~~~~~~~~mp~~~------------~  110 (150)
T COG2010          48 AAARGAGLALFLGNCAACHGPNLG--GAGPLLDGPALAGG---DPPYIVWTILHGTRGGWGEMPAFA------------D  110 (150)
T ss_pred             HHHHHHHHHHhcccchhccCCCCC--CCCCcCcchhhhCC---CcchhhhHHhhhccCCCCcCchHH------------H
Confidence            346889999999999999998722  11222335667654   23333333333    567999996            6


Q ss_pred             CCCHHHHHHHHHHHHhhhh
Q 030717          143 RLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       143 ~Lsd~ei~~VaaYl~~~~~  161 (172)
                      .|+++|+++|++|+.+...
T Consensus       111 ~l~~~~~~~va~yv~~~~~  129 (150)
T COG2010         111 TLSDEQIAAVAAYVMPDLP  129 (150)
T ss_pred             hcCcHHHHHHHHHHHHhhc
Confidence            8999999999999998654

>COG3474 Cytochrome c2 [Energy production and conversion]

Probab=99.08  E-value=6.4e-10  Score=82.51  Aligned_cols=87  Identities=23%  Similarity=0.321  Sum_probs=61.2

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCC-CCCCcc--------------c-hhhhcC---CCCCHHHHHHHHHhCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQ-PGATLF--------------L-KDLQRN---GVDTEDEIYHVTYFGKGRMP  126 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~-~~~~~~--------------~-p~l~~~---~~~~~~~l~~~i~~g~~~MP  126 (172)
                      ..+|+.+|+.+|++ |.+||..+..+.+ .|+.+.              + ..+...   -.|+.+.|...+.+++..+|
T Consensus        27 ~~~da~~G~~vFkk-C~~CH~i~~~g~nkvGP~L~gVvGR~ags~egf~YS~Amk~~~~g~vWd~~~L~~fL~~Pkk~vp  105 (135)
T COG3474          27 ALGDAAAGEKVFKK-CQACHSIEKGGPNKVGPHLWGVVGRPAGSVEGFSYSAAMKKAGGGIVWDEDNLDEFLTAPKKYVP  105 (135)
T ss_pred             ccccHHHhHHHHHH-HHHhhccccCCCCCCCCccccccCccccccCCcccCHHHHhccCCcccCHHHHHHHHhChhhhCC
Confidence            34899999999977 9999985432111 111111              0 111111   26889999999999999899


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717          127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       127 ~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~  161 (172)
                      +-.|        +|.+.-.++|+.||++||++...
T Consensus       106 GTkM--------~faGlkk~~dradlIAYLk~~~~  132 (135)
T COG3474         106 GTKM--------AFAGLKKDQDRADLIAYLKSLPS  132 (135)
T ss_pred             Ccce--------eecCCCCHHHHHHHHHHHHhccc
Confidence            8864        45566789999999999998864

>COG3245 CycB Cytochrome c5 [Energy production and conversion]

Probab=98.70  E-value=3.4e-08  Score=71.88  Aligned_cols=73  Identities=21%  Similarity=0.422  Sum_probs=52.7

Q ss_pred             HHHHHHccCccccCCCCCC--CCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 030717           73 GVSLFRQACIGCHDGGGNV--IQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIK  150 (172)
Q Consensus        73 G~~lf~~~C~~CHg~~g~~--~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~  150 (172)
                      |+++|...|..||+.+..+  ......-..|.+..    ..+.|++...+|.+.||+-+. |         ..+||+|++
T Consensus        50 Gk~vy~~tC~~CHa~~~~GAPk~GdkAaW~PRiaq----G~dtL~~hai~GfnAMPpkG~-c---------a~cSdDe~k  115 (126)
T COG3245          50 GKKVYGATCQACHAAGLPGAPKTGDKAAWAPRIAQ----GKDTLLDHAINGFNAMPPKGG-C---------ADCSDDEVK  115 (126)
T ss_pred             cchhHhhhhhHhccCCCCCCCCCCchhhhhhHHHh----chHHHHHHHhccccCCCCCCC-c---------CCCCHHHHH
Confidence            9999999999999865332  11111112333322    477889999999999999862 2         469999999


Q ss_pred             HHHHHHHhh
Q 030717          151 LLAQFVKSQ  159 (172)
Q Consensus       151 ~VaaYl~~~  159 (172)
                      ..++|+..+
T Consensus       116 AaId~M~~~  124 (126)
T COG3245         116 AAIDFMAAA  124 (126)
T ss_pred             HHHHHHHhc
Confidence            999999764

>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional

Probab=98.32  E-value=4.4e-06  Score=67.06  Aligned_cols=85  Identities=20%  Similarity=0.257  Sum_probs=59.6

Q ss_pred             hHHhHHHHH-HccCccccC--CCCC-------C-CC-C-----------CCCccchhhhcCC-CCCHHHHHHHHHhCCC-
Q 030717           69 DIQKGVSLF-RQACIGCHD--GGGN-------V-IQ-P-----------GATLFLKDLQRNG-VDTEDEIYHVTYFGKG-  123 (172)
Q Consensus        69 d~~~G~~lf-~~~C~~CHg--~~g~-------~-~~-~-----------~~~~~~p~l~~~~-~~~~~~l~~~i~~g~~-  123 (172)
                      ...+|++|| ...|..||.  ..+.       | .+ .           |.....|+|.+.| ..+.+++...+.+++. 
T Consensus        50 lel~Gr~iyi~eGC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~P~lwGs~RtGPDLt~vG~R~s~~w~~~hl~nP~~v  129 (217)
T PRK14487         50 LELAGRDIYIREGCYNCHSQMIRPFRAETERYGHYSLAGESVYDHPFLWGSKRTGPDLARVGGRYSDEWHRNHLINPRSV  129 (217)
T ss_pred             HHHHHHHHHHhcChhhccCccccCCchhhhhcCcccccchhhcccccccCCCCCCcchhhhhccCCHHHHHHHHhCcccC
Confidence            356899999 678999996  2211       0 00 0           1112356666554 3578999999999853 


Q ss_pred             ----CCCCCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHHhhhhCCCCC
Q 030717          124 ----RMPGFGEKCTPRGQCTFGARLQDEDIK--LLAQFVKSQADQGWPK  166 (172)
Q Consensus       124 ----~MP~~~~~~~~~~~~~~~~~Lsd~ei~--~VaaYl~~~~~~gw~~  166 (172)
                          .||+|             ..|++++++  ++++||.++..-|=|.
T Consensus       130 ~PgS~MPay-------------~~L~~~~ld~~~~~~~l~~l~~~gvPY  165 (217)
T PRK14487        130 VPESNMPAY-------------PWLAENDLDGTDTAEKMTALRVVGVPY  165 (217)
T ss_pred             CCCCCCCCC-------------cccccccCCHHHHHHHHHHhhhcCCCC
Confidence                79999             479999977  9999999987666554

>COG4654 Cytochrome c551/c552 [Energy production and conversion]

Probab=98.09  E-value=6.6e-06  Score=58.52  Aligned_cols=77  Identities=22%  Similarity=0.393  Sum_probs=51.2

Q ss_pred             hhhHHhHHHHH-HccCccccCCCCCCCCCCCCccchhhhc-C--CCCCHHHHHHHHHhCCC------CCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLF-RQACIGCHDGGGNVIQPGATLFLKDLQR-N--GVDTEDEIYHVTYFGKG------RMPGFGEKCTPRG  136 (172)
Q Consensus        67 ~~d~~~G~~lf-~~~C~~CHg~~g~~~~~~~~~~~p~l~~-~--~~~~~~~l~~~i~~g~~------~MP~~~~~~~~~~  136 (172)
                      ..++++|+.|| ++.|.+||.++-..++  +.  +.+++. +  +......|...++.|..      .||+-        
T Consensus        20 a~~a~~~~aif~qkgC~~CHq~~vktVG--PS--~kdIAakYag~~~~~~kl~q~i~~g~~g~wg~ipMppq--------   87 (110)
T COG4654          20 AADAEDGKAIFSQKGCVACHQPDVKTVG--PS--YKDIAAKYAGKAGALAKLAQGIKPGGVGVWGPIPMPPQ--------   87 (110)
T ss_pred             ccchhhhHHHHHhccchhhccccccccC--cc--HHHHHHHHccchhHHHHHHHhccccCcCccccCCCCCc--------
Confidence            35678999999 6789999998755322  22  444442 2  12234556666666632      68887        


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          137 QCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       137 ~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                           ..+||.|.+.++.|+..+.
T Consensus        88 -----p~~sd~~a~~~~kwvl~~~  106 (110)
T COG4654          88 -----PAISDADAKTLAKWVLAFI  106 (110)
T ss_pred             -----ccccchHHHHHHHHHHhcc
Confidence                 4678888888888887653

>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG

Probab=97.58  E-value=0.00043  Score=58.36  Aligned_cols=22  Identities=14%  Similarity=0.191  Sum_probs=19.7

Q ss_pred             CCCHHHHHHHHHHHHhhhhCCC
Q 030717          143 RLQDEDIKLLAQFVKSQADQGW  164 (172)
Q Consensus       143 ~Lsd~ei~~VaaYl~~~~~~gw  164 (172)
                      .||++|+++|++||.++.++..
T Consensus       262 ~Lt~~E~~dLvaFL~tLt~~~~  283 (291)
T TIGR03791       262 ELSEREREDLIAFIETLDAELA  283 (291)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCC
Confidence            6999999999999999987654

Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.

>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional

Probab=97.51  E-value=0.00068  Score=57.25  Aligned_cols=92  Identities=20%  Similarity=0.309  Sum_probs=52.5

Q ss_pred             hHHhHHHHH-HccCccccCCC-----------CCCCCC-----------CCCccchhhhcCC-CCCHHHHHHHHHhCC--
Q 030717           69 DIQKGVSLF-RQACIGCHDGG-----------GNVIQP-----------GATLFLKDLQRNG-VDTEDEIYHVTYFGK--  122 (172)
Q Consensus        69 d~~~G~~lf-~~~C~~CHg~~-----------g~~~~~-----------~~~~~~p~l~~~~-~~~~~~l~~~i~~g~--  122 (172)
                      ...+|+.|| ...|..||.-.           |.....           |.....|+|.+.| ..+.+++...+.+++  
T Consensus        50 ~~~~G~~~y~~~gC~~CH~q~vr~~~~~~~~~g~~s~~~~~~~~~p~~~g~~r~GPDL~~vG~r~~~~w~~~~l~~P~~~  129 (294)
T PRK14486         50 LELAGRDVYQREGCVNCHTQTVRPLKSEVVRYGQYSKAGEFAYDHPFLWGSKRTGPDLARIGGKYPDAWHYAHFEDPQAV  129 (294)
T ss_pred             HHHHHHHHHHHcCchhhcCccccCCcccccccCCCCcchhhhccccccccCCCCCCchhhhcccCCHHHHHHHHhCcccC
Confidence            357899999 55999999831           100000           0111245555443 346788889999984  


Q ss_pred             ---CCCCCCCCCCCC--------CCCCCCCCCCCH---------HHHHHHHHHHHhhh
Q 030717          123 ---GRMPGFGEKCTP--------RGQCTFGARLQD---------EDIKLLAQFVKSQA  160 (172)
Q Consensus       123 ---~~MP~~~~~~~~--------~~~~~~~~~Lsd---------~ei~~VaaYl~~~~  160 (172)
                         +.||+|...-+-        .+.-..+--.++         .|+++|++||..+.
T Consensus       130 ~p~s~MP~~~~l~~~~~~~~~~~~~~~~~~~py~~~~~~~~~~~~e~~AlvAYl~~L~  187 (294)
T PRK14486        130 VPRSNMPAYAFLKGKPLDAALTQRKMRALGFPYTDADLAALAGKTEMDAMVAYMQSLG  187 (294)
T ss_pred             CCCCCCCCCHHHhhccCcHHHHHHhhhhcCCCCCHHHHHHhcccHHHHHHHHHHHHhc
Confidence               479999622111        000000011233         36789999999885

>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1

Probab=97.41  E-value=6.1e-05  Score=58.06  Aligned_cols=65  Identities=22%  Similarity=0.396  Sum_probs=38.0

Q ss_pred             HhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCC-CCCCCCCCCCCCCCCCCCCHHHH
Q 030717           71 QKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMP-GFGEKCTPRGQCTFGARLQDEDI  149 (172)
Q Consensus        71 ~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP-~~~~~~~~~~~~~~~~~Lsd~ei  149 (172)
                      +.|++|++.+|++||.....+    .   +..+.. ...+++.+...|.    .|- .++            -.+|++|.
T Consensus         1 q~G~~Lv~~kC~~CHs~~~~g----~---~sRIs~-~rKTPEGW~mTV~----RM~~~hG------------l~Is~eer   56 (167)
T PF09098_consen    1 QDGEQLVQEKCAGCHSADYDG----A---LSRISH-QRKTPEGWDMTVK----RMQRVHG------------LPISPEER   56 (167)
T ss_dssp             --HHHHHHHCHCCTC-EECTT----E---ETTGGG-EEE-HHHHHHHHH----HHHHHC-----------------HHHH
T ss_pred             CcHHHHHHHHHHHhcCccccC----c---cccccc-ccCCHHHHHHHHH----HHHHHcC------------CCCCHHHH
Confidence            369999999999999865442    1   222211 1226777777664    354 333            57999999


Q ss_pred             HHHHHHHHhh
Q 030717          150 KLLAQFVKSQ  159 (172)
Q Consensus       150 ~~VaaYl~~~  159 (172)
                      ..|+.||...
T Consensus        57 ~avVkYLAd~   66 (167)
T PF09098_consen   57 RAVVKYLADT   66 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999999864

4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.

>TIGR03806 chp_HNE_0200 conserved hypothetical protein, HNE_0200 family

Probab=97.37  E-value=0.0004  Score=59.20  Aligned_cols=78  Identities=23%  Similarity=0.362  Sum_probs=45.0

Q ss_pred             HHhHHHHHHccCccccCCCCCCCCCCCCccc--h-----------hhhcCCCC---------C--HHHHHHHHHhC--CC
Q 030717           70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFL--K-----------DLQRNGVD---------T--EDEIYHVTYFG--KG  123 (172)
Q Consensus        70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~--p-----------~l~~~~~~---------~--~~~l~~~i~~g--~~  123 (172)
                      ..+-+.++..||+.||+++|.....+-.+..  +           ...+.+..         +  ...|+..+..-  ..
T Consensus       213 e~rarpyL~~NC~~CH~p~g~~~~sgL~L~~~~~~~~~~gv~k~p~~~ggg~~g~~~~IvPGdpe~SiL~~R~~~~d~~~  292 (317)
T TIGR03806       213 AQRARAYLDVNCAHCHNPGGLASNSGLDLRFDDPLGYTLGVCKQPVAAGGGSGGLKYDIVPGDPEKSILLYRMHSTEPGV  292 (317)
T ss_pred             HHHHHHHHHhHHHhcCCCCcCccccceeEecccccchhcccccccccccCCCCCcceeecCCChhhChHHHHHhcCCccc
Confidence            3567778899999999986543222222111  1           01111100         1  12244444322  34


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhh
Q 030717          124 RMPGFGEKCTPRGQCTFGARLQD-EDIKLLAQFVKSQ  159 (172)
Q Consensus       124 ~MP~~~~~~~~~~~~~~~~~Lsd-~ei~~VaaYl~~~  159 (172)
                      .||+.+            ..|++ +++..|.+||.++
T Consensus       293 ~MPp~G------------~~l~~~e~vaLI~~WI~~l  317 (317)
T TIGR03806       293 RMPELG------------RSLVHQEGLALIRQWIASL  317 (317)
T ss_pred             cCCcCC------------CCCCCHHHHHHHHHHHHhC
Confidence            899987            56776 7899999999864

The model TIGR03805 describes an uncharacterized protein family that contains repeats associated with the formation of a right-handed helical stack of parallel beta strands, homologous to those found in a number of carbohydrate-binding proteins and sugar hydrolases. This model describes another uncharacterized protein family, found in the same species as TIGR03805 member proteins, usually as the adjacent gene or in a fusion protein. An example is HNE_0200 from Hyphomonas neptunium ATCC 15444. Sometimes two members of this family are with a single member of TIGR03805. The function is unknown.

>TIGR00781 ccoO cytochrome c oxidase, cbb3-type, subunit II

Probab=97.36  E-value=0.0014  Score=53.22  Aligned_cols=82  Identities=20%  Similarity=0.244  Sum_probs=50.4

Q ss_pred             hHHhHHHHH-HccCccccC--CCCC-------C--CCC-----------CCCccchhhhcCC-CCCHHHHHHHHHhCCC-
Q 030717           69 DIQKGVSLF-RQACIGCHD--GGGN-------V--IQP-----------GATLFLKDLQRNG-VDTEDEIYHVTYFGKG-  123 (172)
Q Consensus        69 d~~~G~~lf-~~~C~~CHg--~~g~-------~--~~~-----------~~~~~~p~l~~~~-~~~~~~l~~~i~~g~~-  123 (172)
                      ....|+.|| +..|..||.  ..+.       |  ...           |..-..|+|.+.| ..+.+++...+.+++. 
T Consensus        49 lel~Gr~iyi~eGC~~CHsQ~VR~~~~e~~ryG~~S~a~e~~yd~p~lwGs~RtGPDLt~vG~R~s~~wh~~hl~nPr~v  128 (232)
T TIGR00781        49 LELAGRDIYIREGCYHCHSQMIRPFRAEVERYGHYSLAGESMYDHPFQWGSKRTGPDLARVGGRYSDEWHVKHLFDPRSV  128 (232)
T ss_pred             HHHHHHHHHHhcChhhcccccccCcchhhhhcCcccccchhhcccccccCCCCcCcCcccccccCCHHHHHHHHhCcccc
Confidence            356899999 778999996  2210       0  000           1112357777654 3568889999999853 


Q ss_pred             ----CCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHhhhhCC
Q 030717          124 ----RMPGFGEKCTPRGQCTFGARLQDEDI--KLLAQFVKSQADQG  163 (172)
Q Consensus       124 ----~MP~~~~~~~~~~~~~~~~~Lsd~ei--~~VaaYl~~~~~~g  163 (172)
                          .||+|.             .|+++++  .++.+.++.++.-|
T Consensus       129 ~PgSiMP~y~-------------~L~~~~ld~~~~~~~~~~~~~~G  161 (232)
T TIGR00781       129 VPESIMPAYK-------------HLATKKVDVDTAYAEAKTQKKVG  161 (232)
T ss_pred             CCCCCCCCCc-------------ccccccCCHHHHHHHHHHHHhcC
Confidence                799994             4554444  35556666554333

This model describes the monoheme subunit of the cbb3-type cytochrome oxidase, found in a subset of Proteobacterial species. Species having this protein also have CcoN (subunit I, containing copper and two heme groups), CcoP (subunit III, containing two hemes), and CcoQ (essential for incorporation of the prosthetic groups).

>PF09086 DUF1924: Domain of unknown function (DUF1924); InterPro: IPR015170 This entry is found in a set of bacterial proteins, including Cytochrome c-type protein

Probab=96.89  E-value=0.0005  Score=48.60  Aligned_cols=76  Identities=9%  Similarity=0.210  Sum_probs=39.4

Q ss_pred             chhhHHhHHHHHH---------ccCccccCCCCCCC----CCCCC--ccchhhhcCCCCCHHHHHHHHHhC-CCCCCCCC
Q 030717           66 QTVDIQKGVSLFR---------QACIGCHDGGGNVI----QPGAT--LFLKDLQRNGVDTEDEIYHVTYFG-KGRMPGFG  129 (172)
Q Consensus        66 ~~~d~~~G~~lf~---------~~C~~CHg~~g~~~----~~~~~--~~~p~l~~~~~~~~~~l~~~i~~g-~~~MP~~~  129 (172)
                      ...++++|+++|.         ..|++||+.+....    ..|..  +..|..-...+.+.+.+.+....- ..+   ++
T Consensus         7 ~~~sa~rG~~~f~~~~~~~g~~~sCasCH~~~p~~~Gkh~~TgK~I~PmAps~Np~RftD~~kVEKwf~RNC~dv---lg   83 (98)
T PF09086_consen    7 AGFSAARGEAFFTSKHTGNGKEWSCASCHTADPTQPGKHAKTGKVIEPMAPSVNPKRFTDAAKVEKWFKRNCNDV---LG   83 (98)
T ss_dssp             SS--HHHHHHHHH--ECCTTCECSCHHHH-SSTTS-EE-TTTS-EE--SSTTTSTTTTSSHHHHHHHHHHHHHHH---HS
T ss_pred             CCCCHHHHHHHHHccCCCCCCCCCcccccCCCcccccccccCCCcccCcCCccChhhcCCHHHHHHHHHccchhh---hc
Confidence            4567899999993         25999999663311    11211  112222222345666666644321 111   33


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 030717          130 EKCTPRGQCTFGARLQDEDIKLLAQFV  156 (172)
Q Consensus       130 ~~~~~~~~~~~~~~Lsd~ei~~VaaYl  156 (172)
                                  ..-|.+|-.|+++||
T Consensus        84 ------------ReCTa~EKgD~l~yl   98 (98)
T PF09086_consen   84 ------------RECTAQEKGDVLAYL   98 (98)
T ss_dssp             ------------S---HHHHHHHHHHH
T ss_pred             ------------ccCCHHHhcchheeC
Confidence                        567999999999997

It is functionally uncharacterised. ; PDB: 1DW2_C 1DW1_A 1DW3_C 1DW0_A 1OAE_A 1GU2_B 1E8E_A.

>PF02433 FixO: Cytochrome C oxidase, mono-heme subunit/FixO; InterPro: IPR003468 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO) []

Probab=96.62  E-value=0.016  Score=47.06  Aligned_cols=18  Identities=28%  Similarity=0.667  Sum_probs=15.4

Q ss_pred             hHHhHHHHH-HccCccccC
Q 030717           69 DIQKGVSLF-RQACIGCHD   86 (172)
Q Consensus        69 d~~~G~~lf-~~~C~~CHg   86 (172)
                      -...|+.|| ...|..||.
T Consensus        49 lel~GR~iYi~eGC~~CHS   67 (226)
T PF02433_consen   49 LELAGRDIYIREGCYYCHS   67 (226)
T ss_pred             HHHhHHHHHHHcCchhccc
Confidence            356899999 678999997

Cytochrome cbb3 oxidases are required both to support symbiotic nitrogen fixation, whilst ensuring that the oxygen-labile nitrogenase is not compromised. Cytochrome cbb3 oxidases consist of four subunits: FixN (or CcoN), FixO (or CcoO), FixP (or CcoP) and FixQ (or CcoQ). The catalytic core is comprised of subunits FixN, FixO and FixP, where FixN acts as the catalytic subunit, and Fix O and FixP are membrane-bound mono- and di-haem cytochromes c, respectively. The FixQ subunit protects the core complex in the presence of oxygen from proteolytic degradation []. This entry represents the mono-haem FixO subunit.

>PF10643 Cytochrome-c551: Photosystem P840 reaction-centre cytochrome c-551; InterPro: IPR019604 A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme, which are anaerobic photo-auto-trophic organisms

Probab=96.38  E-value=0.0048  Score=49.44  Aligned_cols=66  Identities=20%  Similarity=0.337  Sum_probs=39.8

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCC-CHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVD-TEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQ  145 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~-~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Ls  145 (172)
                      ..|....+++|+..|..||.-+..         -..+..+... ..+.+++.++    .||.-              .++
T Consensus       166 gfdf~AAk~L~~~KCNkCHTl~SV---------ed~lrkYkKkGkid~iVkrMq----a~PnS--------------gIt  218 (233)
T PF10643_consen  166 GFDFAAAKALFDRKCNKCHTLKSV---------EDALRKYKKKGKIDKIVKRMQ----AVPNS--------------GIT  218 (233)
T ss_dssp             T--HHHHHHHHHHHTTSSS-SHHH---------HHHHHHTTTTT-HHHHHHHHH----HSTT------------------
T ss_pred             hhhHHHHHHHHHhhccccccHHHH---------HHHHHHHHhcCCHHHHHHHHH----hCCCC--------------CCC
Confidence            345677889999999999973211         2223233221 3666666665    46764              589


Q ss_pred             HHHHHHHHHHHHhh
Q 030717          146 DEDIKLLAQFVKSQ  159 (172)
Q Consensus       146 d~ei~~VaaYl~~~  159 (172)
                      ++|+..|..||..+
T Consensus       219 ~eDa~~I~~YLnek  232 (233)
T PF10643_consen  219 DEDAPQIMMYLNEK  232 (233)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999864

The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidised P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group. ; PDB: 3A9F_A.

>PF14376 Haem_bd: Haem-binding domain

Probab=96.22  E-value=0.014  Score=43.90  Aligned_cols=83  Identities=18%  Similarity=0.235  Sum_probs=45.7

Q ss_pred             hHHhHHHHHHccCccccCCCCCCCCCCCC-----------------ccchhhhcCC----CCCHHHHHHHHHhCCCCCCC
Q 030717           69 DIQKGVSLFRQACIGCHDGGGNVIQPGAT-----------------LFLKDLQRNG----VDTEDEIYHVTYFGKGRMPG  127 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~-----------------~~~p~l~~~~----~~~~~~l~~~i~~g~~~MP~  127 (172)
                      ..+.-+.|+++.|.-||.....-+-....                 +.+..+..++    ....+.+...|.+|  .||.
T Consensus        32 ~p~~v~~il~~~CydCHSn~T~~PwYa~i~p~s~l~~~dI~~Gr~~lNfs~~~~~~~~~~~~~l~~i~~~I~~g--~MP~  109 (137)
T PF14376_consen   32 APEEVKIILKNSCYDCHSNNTRYPWYANIAPASWLMEKDIKEGRRHLNFSEWGSYSKRKQEAKLAKIEEVIEDG--EMPP  109 (137)
T ss_pred             chHHHHHHHHccccccCCCCCCCccceecCchHHHHHHHHHHHHHHhCcchhhhcCcccCHHHHHHHHHHHHcC--CCCh
Confidence            34556678899999999865432211110                 0000100000    01234566667654  4665


Q ss_pred             CCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHhh
Q 030717          128 FGEKCTPRGQCTF-GARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       128 ~~~~~~~~~~~~~-~~~Lsd~ei~~VaaYl~~~  159 (172)
                      ..+.-      .| ...||++|...|++|+.+.
T Consensus       110 ~~Y~~------~H~~a~Ls~~ek~~Ll~Wi~~~  136 (137)
T PF14376_consen  110 PSYTL------LHWEAKLSEEEKQALLNWIKEQ  136 (137)
T ss_pred             HHHhh------hCCCCCCCHHHHHHHHHHHHHc
Confidence            43110      11 3679999999999999875

>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]

Probab=96.14  E-value=0.0081  Score=49.61  Aligned_cols=40  Identities=28%  Similarity=0.295  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhCCC-----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCC
Q 030717          111 EDEIYHVTYFGKG-----RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQG  163 (172)
Q Consensus       111 ~~~l~~~i~~g~~-----~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~g  163 (172)
                      ...+...|+++..     .||++             ..++|++.++|++||..++++.
T Consensus       172 ~~~~~~~i~~p~~~k~~~~m~~~-------------~~~tdq~~~dlvaYL~~~~ep~  216 (250)
T COG2857         172 EGELGIFIADPLKDKPGTYMPGN-------------PALTDQEVKDLVAYLKWAAEPE  216 (250)
T ss_pred             hhhHhhhccCccccCCcCCCCCC-------------hhhHHHHHHHHHHHHHHccCcc
Confidence            3346667777643     68877             5799999999999999887553

>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes

Probab=95.92  E-value=0.011  Score=47.90  Aligned_cols=23  Identities=22%  Similarity=0.686  Sum_probs=19.2

Q ss_pred             chhhHHhHHHHHHccCccccCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGG   88 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~   88 (172)
                      ..+.+++|.++|.+.|++||+..
T Consensus        11 D~aslqRG~qvy~~~C~~CHsl~   33 (219)
T PF02167_consen   11 DKASLQRGAQVYMEVCASCHSLK   33 (219)
T ss_dssp             -HHHHHHHHHHHHHTGGGTSBCT
T ss_pred             cHHHHHHHHHHHHHHHhhccccc
Confidence            34568999999999999999853

It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....

>TIGR02162 torC trimethylamine-N-oxide reductase c-type cytochrome TorC

Probab=95.75  E-value=0.011  Score=51.77  Aligned_cols=58  Identities=21%  Similarity=0.340  Sum_probs=40.7

Q ss_pred             HHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 030717           70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDI  149 (172)
Q Consensus        70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei  149 (172)
                      -..|+.+|+.+|+.||.....    ..         +   +...+..++.    .|-++             -.|+++|.
T Consensus       321 w~~a~~ly~~~Cs~CH~~~~~----~h---------f---~AN~W~g~~~----~M~~~-------------t~l~~~e~  367 (386)
T TIGR02162       321 WAYAKSMYNGACSMCHVQPEP----AH---------F---DANTWIGTLN----GMKGF-------------TNLDKEQE  367 (386)
T ss_pred             HHHHHHHHhcchhhhcCCCCc----cc---------c---CcccCHHHHH----HHhhh-------------cCCCHHHH
Confidence            467999999999999983211    11         1   3334444443    47777             47999999


Q ss_pred             HHHHHHHHhhh
Q 030717          150 KLLAQFVKSQA  160 (172)
Q Consensus       150 ~~VaaYl~~~~  160 (172)
                      +-|..||..-+
T Consensus       368 ~lv~~YLQ~hA  378 (386)
T TIGR02162       368 RLVLRYLQMHA  378 (386)
T ss_pred             HHHHHHHHHhh
Confidence            99999998654

This family includes consists of TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes.

>COG3748 Predicted membrane protein [Function unknown]

Probab=95.57  E-value=0.036  Score=47.39  Aligned_cols=76  Identities=24%  Similarity=0.305  Sum_probs=45.9

Q ss_pred             hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHH-----HhCC-CCCCCCCCCCCCCCCCCCCC
Q 030717           69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT-----YFGK-GRMPGFGEKCTPRGQCTFGA  142 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i-----~~g~-~~MP~~~~~~~~~~~~~~~~  142 (172)
                      +..+-+.+....|..||.....  -.+.+  .|.. +...++++++....     +-|+ ..||+-.           -.
T Consensus       323 ~F~kv~~~v~~rCs~CHaa~P~--~e~~~--~~p~-gv~ldt~~~iaa~A~~Iy~qA~~s~~MP~gN-----------vt  386 (407)
T COG3748         323 HFAKVRDVVQGRCSMCHAAEPT--WEGIS--APPK-GVMLDTDEQIAAHAREIYLQAGRSHAMPPGN-----------VT  386 (407)
T ss_pred             chHHHHHHHHhhhhhhhcCCCc--ccccc--cCCC-ceeecCHHHHHHHHHHHHHHHHHhccCCCcc-----------cc
Confidence            4566777888999999984321  00110  1111 12234566655422     2333 3799864           25


Q ss_pred             CCCHHHHHHHHHHHHhhh
Q 030717          143 RLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       143 ~Lsd~ei~~VaaYl~~~~  160 (172)
                      .+||||..-|.+|+.+-.
T Consensus       387 ~mT~eER~ll~aW~e~~~  404 (407)
T COG3748         387 QMTDEERALLAAWFESGA  404 (407)
T ss_pred             cCCHHHHHHHHHHHHhcc
Confidence            799999999999998754

>KOG3453 consensus Cytochrome c [Energy production and conversion]

Probab=95.10  E-value=0.02  Score=41.40  Aligned_cols=83  Identities=25%  Similarity=0.365  Sum_probs=52.1

Q ss_pred             chhhHHhHHHHHHccCccccCCCCC-CCCCCCCccchhhhc--------C---------C-CCCHHHHHHHHHhCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGN-VIQPGATLFLKDLQR--------N---------G-VDTEDEIYHVTYFGKGRMP  126 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~-~~~~~~~~~~p~l~~--------~---------~-~~~~~~l~~~i~~g~~~MP  126 (172)
                      ...|++.|+.+|-..|..||..... ....++.  +..+.+        +         + .|..+.|...+.+++-..|
T Consensus         5 ~~~d~~~g~~~f~~rc~qch~~~~~~~~k~~p~--l~gl~g~~~g~~~~~sy~~a~KnKgV~wgE~tl~eyLenpkkyip   82 (110)
T KOG3453|consen    5 PAGDVEKGKKIFPQRCAQCHTVEKGGFHKTGPN--LHGLFGRQLGQAAGLSYTDANKNKGVTWGEDTLMEYLENPKKYIP   82 (110)
T ss_pred             cccccccccccceeeccccccccCCcccccCCc--chhhHHHhhccccCcceeecccCCceEEcchhHHHHHhCCCcccc
Confidence            3567889999999999999974321 1111111  111111        0         1 3567788899999877666


Q ss_pred             CCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhh
Q 030717          127 GFGEKCTPRGQCTFGARLQD-EDIKLLAQFVKSQ  159 (172)
Q Consensus       127 ~~~~~~~~~~~~~~~~~Lsd-~ei~~VaaYl~~~  159 (172)
                      +-.|.        | ..|.. +|..|+++|+..-
T Consensus        83 GtKmi--------f-aGikk~~eraDlIayl~ka  107 (110)
T KOG3453|consen   83 GTKMI--------F-AGIKKKAERADLIAYLKKA  107 (110)
T ss_pred             cccee--------e-cccCchHHHHHHHHHHHHh
Confidence            55421        1 13455 9999999999764

>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional

Probab=95.06  E-value=0.061  Score=50.59  Aligned_cols=81  Identities=21%  Similarity=0.318  Sum_probs=45.3

Q ss_pred             HHhHHHHH-HccCccccCCC-----------CCCCCC-----------CCCccchhhhcCC-CCCHHHHHHHHHhCCC--
Q 030717           70 IQKGVSLF-RQACIGCHDGG-----------GNVIQP-----------GATLFLKDLQRNG-VDTEDEIYHVTYFGKG--  123 (172)
Q Consensus        70 ~~~G~~lf-~~~C~~CHg~~-----------g~~~~~-----------~~~~~~p~l~~~~-~~~~~~l~~~i~~g~~--  123 (172)
                      ..+|+++| +..|..||.--           |.-...           |.....|+|.+.| ..+.+.-...+.+++.  
T Consensus       537 ~~~Gr~iyi~egC~~CHsq~vr~~~~e~~r~G~~s~~~e~~~d~p~~~Gs~rtgpdl~~~g~~~~~~wh~~hl~~p~~~~  616 (712)
T PRK14485        537 ELEGRDLYIREGCYNCHSQMIRPFRSEVERYGEYSKAGEFVYDHPFLWGSKRTGPDLAREGGKYPDSWHYNHMEDPQSTS  616 (712)
T ss_pred             HHhhHHHHHHcCccccccccCCCCchhHHhcCCCCchhhhhccCCcccCCCCcCcchhhhcCCCChHHHHHHhcCchhcC
Confidence            56899999 67899999721           110000           1111246666544 2345666667777754  


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 030717          124 ---RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKS  158 (172)
Q Consensus       124 ---~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~  158 (172)
                         .||++.        |-+...++.+++.+-...++.
T Consensus       617 p~s~mp~y~--------~l~~~~~~~~~~~~~~~~~~~  646 (712)
T PRK14485        617 PGSIMPAYP--------WLLENELDISDTPAKIKAMQT  646 (712)
T ss_pred             CCCCCCCCh--------hhhhCCCChHHHHHHHHHHHh
Confidence               799885        223345555555544444443

>PRK15032 trimethylamine N-oxide reductase cytochrome c-type subunit; Provisional

Probab=95.06  E-value=0.023  Score=49.81  Aligned_cols=58  Identities=19%  Similarity=0.306  Sum_probs=40.1

Q ss_pred             HHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 030717           70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDI  149 (172)
Q Consensus        70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei  149 (172)
                      -..|+.+|+.+|+.||+....    ..         +   +...+..++.    .|-.+             -.|+++|.
T Consensus       318 w~ya~~ly~~~Cs~CHa~~~~----~h---------f---~AN~W~g~~k----~M~~~-------------t~ld~~e~  364 (390)
T PRK15032        318 WAYADSLYNGTCNQCHGAPEI----AH---------F---DANGWIGTLN----GMIGF-------------TSLDKREE  364 (390)
T ss_pred             HHHHHHHHhccchhhcCCCCc----cc---------c---CcccCHHHHH----HHHhc-------------cCCCHHHH
Confidence            357999999999999983221    11         1   3333344443    47777             47999999


Q ss_pred             HHHHHHHHhhh
Q 030717          150 KLLAQFVKSQA  160 (172)
Q Consensus       150 ~~VaaYl~~~~  160 (172)
                      +-|..||..-+
T Consensus       365 ~ll~kYLQ~hA  375 (390)
T PRK15032        365 RTLLKYLQMNA  375 (390)
T ss_pred             HHHHHHHHHhc
Confidence            99999997654

>COG2993 CcoO Cbb3-type cytochrome oxidase, cytochrome c subunit [Energy production and conversion]

Probab=94.11  E-value=0.018  Score=45.89  Aligned_cols=83  Identities=20%  Similarity=0.274  Sum_probs=45.7

Q ss_pred             HhHHHHH-HccCccccCCC-----------C-CCCCCCCCccc----------hhhhcCC-CCCHHHHHHHHHhCCC---
Q 030717           71 QKGVSLF-RQACIGCHDGG-----------G-NVIQPGATLFL----------KDLQRNG-VDTEDEIYHVTYFGKG---  123 (172)
Q Consensus        71 ~~G~~lf-~~~C~~CHg~~-----------g-~~~~~~~~~~~----------p~l~~~~-~~~~~~l~~~i~~g~~---  123 (172)
                      ..|+.|| ...|..||.--           | -.......+..          |+|++.| ..+.++-...+.+++.   
T Consensus        53 LaGR~IYIreGCy~CHSQmiRpfr~E~eRYGhySvA~Es~yDhPflWGSKRTGPDLaRVG~ryS~dWH~~Hl~~PR~vVP  132 (227)
T COG2993          53 LAGRDIYIREGCYVCHSQMIRPFRAEVERYGHYSVAGESVYDHPFLWGSKRTGPDLARVGGRYSDDWHRAHLLDPRSVVP  132 (227)
T ss_pred             hccceeEeecccchhhhhccccchHHHHhhccceechhhhccCchhhcCCccCcchhhhccccccHHHHHHccCchhcCc
Confidence            4699998 67899999721           0 00111111223          4444433 3356666667777754   


Q ss_pred             --CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCCC
Q 030717          124 --RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW  164 (172)
Q Consensus       124 --~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw  164 (172)
                        .||+++.        -+.   +.-|++++.+-+..++.-|=
T Consensus       133 eSiMPsY~~--------L~~---~~ld~~d~~~~~~~~r~~GV  164 (227)
T COG2993         133 ESIMPSYPW--------LFD---NKLDVDDIGAELKALRKVGV  164 (227)
T ss_pred             cccCcccHH--------Hhc---CCCchHHHHHHHHhhccCCC
Confidence              7999962        111   22356666666666654443

>PF09626 DHC: Dihaem cytochrome c; InterPro: IPR018588 Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region

Probab=93.71  E-value=0.066  Score=39.50  Aligned_cols=59  Identities=15%  Similarity=0.233  Sum_probs=32.4

Q ss_pred             HHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 030717           77 FRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMP-GFGEKCTPRGQCTFGARLQDEDIKLLAQF  155 (172)
Q Consensus        77 f~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP-~~~~~~~~~~~~~~~~~Lsd~ei~~VaaY  155 (172)
                      |..+|++||..-           .|.+     ...+.+..++.+    |. =|+          -...|++++...|.+|
T Consensus         1 Y~~eCgsCH~ay-----------pP~~-----Lpa~sW~~im~~----l~~HFG----------~~a~Ld~~~~~~I~~Y   50 (120)
T PF09626_consen    1 YKEECGSCHMAY-----------PPGL-----LPAESWQKIMQD----LDDHFG----------EDASLDPATQAEIWAY   50 (120)
T ss_dssp             -HHHTTSSS---------------GGG-----S-HHHHHHHHCG----GGGBTT----------B-----HHHHHHHHHH
T ss_pred             CccchhhccCcC-----------Cccc-----CCHHHHHHHHHh----HHHhcC----------CCCCCCHHHHHHHHHH
Confidence            568999999621           1222     156677777643    33 122          1245999999999999


Q ss_pred             HHhhhhCCCC
Q 030717          156 VKSQADQGWP  165 (172)
Q Consensus       156 l~~~~~~gw~  165 (172)
                      |.+.+.+.-.
T Consensus        51 L~~nAa~~~~   60 (120)
T PF09626_consen   51 LQANAADRSQ   60 (120)
T ss_dssp             HHHTSTTTTS
T ss_pred             HHHccccccc
Confidence            9987654433

Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth []. In certain species DHC is found upstream of IPR011577 from INTERPRO. ; PDB: 2FWT_A 2FW5_A.

>PF07635 PSCyt1: Planctomycete cytochrome C; InterPro: IPR011429 These proteins share a region of homology at their N terminus that contains the C-{CPWHF}-{CPWR}-C-H-{CFYW} motif typical of cytochrome c

Probab=90.19  E-value=0.47  Score=30.32  Aligned_cols=10  Identities=30%  Similarity=0.953  Sum_probs=8.0

Q ss_pred             CccccCCCCC
Q 030717           81 CIGCHDGGGN   90 (172)
Q Consensus        81 C~~CHg~~g~   90 (172)
                      |..||+....
T Consensus         1 C~~CHg~~~~   10 (59)
T PF07635_consen    1 CFSCHGPDKQ   10 (59)
T ss_pred             CcCCCCCCCc
Confidence            9999997644

>COG1858 MauG Cytochrome c peroxidase [Inorganic ion transport and metabolism]

Probab=89.32  E-value=0.65  Score=40.45  Aligned_cols=20  Identities=35%  Similarity=0.968  Sum_probs=15.9

Q ss_pred             hHHhHHHHHH--ccCccccCCC
Q 030717           69 DIQKGVSLFR--QACIGCHDGG   88 (172)
Q Consensus        69 d~~~G~~lf~--~~C~~CHg~~   88 (172)
                      .-.+|-++|.  .+|++||...
T Consensus       219 ~e~rGl~LF~~k~~C~aCH~g~  240 (364)
T COG1858         219 QEKRGLALFKGKANCAACHNGI  240 (364)
T ss_pred             HHHHHHHHHccCCCchhhccCc
Confidence            3568999995  6999999743

>PF06537 DUF1111: Protein of unknown function (DUF1111); InterPro: IPR010538 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=88.71  E-value=0.53  Score=42.57  Aligned_cols=22  Identities=27%  Similarity=0.711  Sum_probs=18.4

Q ss_pred             hhhHHhHHHHH-HccCccccCCC
Q 030717           67 TVDIQKGVSLF-RQACIGCHDGG   88 (172)
Q Consensus        67 ~~d~~~G~~lf-~~~C~~CHg~~   88 (172)
                      ...+.+|++|| +..|++||.+.
T Consensus       360 ~~~v~~G~~lF~~~GCa~CH~p~  382 (499)
T PF06537_consen  360 DPQVLRGKQLFYQIGCASCHTPS  382 (499)
T ss_pred             cHHHHHHHHHHHhcCCcccCCCc
Confidence            45688999999 57899999864

>KOG3052 consensus Cytochrome c1 [Energy production and conversion]

Probab=86.80  E-value=0.24  Score=41.12  Aligned_cols=20  Identities=30%  Similarity=0.876  Sum_probs=17.5

Q ss_pred             hhHHhHHHHHHccCccccCC
Q 030717           68 VDIQKGVSLFRQACIGCHDG   87 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~   87 (172)
                      +.+.+|-++|.+.|++||..
T Consensus        93 aSiRRGyqVYkqVCaaCHSm  112 (311)
T KOG3052|consen   93 ASIRRGYQVYKQVCAACHSM  112 (311)
T ss_pred             HHHhhhHHHHHHHHHHhhhh
Confidence            35789999999999999983

>PF03150 CCP_MauG: Di-haem cytochrome c peroxidase; InterPro: IPR004852 This is a group of distinct cytochrome c peroxidases (CCPs) that contain two haem groups

Probab=86.76  E-value=0.27  Score=37.81  Aligned_cols=20  Identities=35%  Similarity=0.679  Sum_probs=13.7

Q ss_pred             hHHhHHHHHH---------ccCccccCCC
Q 030717           69 DIQKGVSLFR---------QACIGCHDGG   88 (172)
Q Consensus        69 d~~~G~~lf~---------~~C~~CHg~~   88 (172)
                      -++.|+.||.         ..|++||.+.
T Consensus         4 ~~~LGk~LF~D~~LS~~~~~SCasCH~~~   32 (159)
T PF03150_consen    4 KAALGKKLFFDPRLSGDGTVSCASCHDPE   32 (159)
T ss_dssp             HHHHHHHHHT-GGGSTTSS--HHHHS-TT
T ss_pred             HHHHHHHHhCCCccCCCcCcCchhhCCCc
Confidence            4678999993         4799999754

Similar to other cytochrome c peroxidases, they reduce hydrogen peroxide to water using c-type haem as an oxidizable substrate. However, since they possess two, instead of one, haem prosthetic groups, bacterial CCPs reduce hydrogen peroxide without the need to generate semi-stable free radicals. The two haem groups have significantly different redox potentials. The high potential (+320 mV) haem feeds electrons from electron shuttle proteins to the low potential (-330 mV) haem, where peroxide is reduced (indeed, the low potential site is known as the peroxidatic site) []. The CCP protein itself is structured into two domains, each containing one c-type haem group, with a calcium-binding site at the domain interface. This family also includes MauG proteins, whose similarity to di-haem CCP was previously recognised [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IQC_A 2VHD_B 1EB7_A 3RN0_A 3SVW_B 3RMZ_A 3SJL_B 3PXW_A 3SLE_B 3PXS_A ....

>COG3488 Predicted thiol oxidoreductase [Energy production and conversion]

Probab=86.22  E-value=0.69  Score=40.01  Aligned_cols=21  Identities=29%  Similarity=0.778  Sum_probs=17.4

Q ss_pred             hhhHHhHHHHH-HccCccccCC
Q 030717           67 TVDIQKGVSLF-RQACIGCHDG   87 (172)
Q Consensus        67 ~~d~~~G~~lf-~~~C~~CHg~   87 (172)
                      ..++..|++|| ...|.+||.+
T Consensus       348 dp~vl~GkkLF~~agC~aCH~p  369 (481)
T COG3488         348 DPQVLAGKKLFAQAGCVACHTP  369 (481)
T ss_pred             ChhhhhhhHHHHhcCchhccCC
Confidence            44578899998 6799999985

>COG3258 Cytochrome c [Energy production and conversion]

Probab=84.88  E-value=2.2  Score=35.66  Aligned_cols=16  Identities=13%  Similarity=0.295  Sum_probs=12.3

Q ss_pred             CHHHHHHHHHHHHhhh
Q 030717          145 QDEDIKLLAQFVKSQA  160 (172)
Q Consensus       145 sd~ei~~VaaYl~~~~  160 (172)
                      +-.|++++++|+.=+.
T Consensus       121 DspEmkAmlaY~kWL~  136 (293)
T COG3258         121 DSPEMKAMLAYMKWLK  136 (293)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            5678999999987443

>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG

Probab=80.91  E-value=1.1  Score=37.89  Aligned_cols=21  Identities=33%  Similarity=0.741  Sum_probs=16.1

Q ss_pred             hhHHhHHHHH---------HccCccccCCC
Q 030717           68 VDIQKGVSLF---------RQACIGCHDGG   88 (172)
Q Consensus        68 ~d~~~G~~lf---------~~~C~~CHg~~   88 (172)
                      ..++-|+.||         ...|++||.+.
T Consensus         4 ~k~~LGk~LFfD~~LS~~~~~SCasCH~p~   33 (291)
T TIGR03791         4 EKAALGKALFFDPRLSRDGSMSCATCHNPG   33 (291)
T ss_pred             HHHHHHHHHhcCcccCCCCCcCchhcCCcc
Confidence            3467899998         24799999854

Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
2dge_A	105	Crystal Structure Of Oxidized Cytochrome C6a From A		3e-48
2ce0_A	105	Structure Of Oxidized Arabidopsis Thaliana Cytochro		3e-47
2v07_A	105	Structure Of The Arabidopsis Thaliana Cytochrome C6		6e-47
1gdv_A	85	Crystal Structure Of Cytochrome C6 From Red Alga Po		6e-12
2zbo_A	86	Crystal Structure Of Low-Redox-Potential Cytochrom		6e-11
1c6s_A	87	The Solution Structure Of Cytochrome C6 From The Th		2e-10
1f1f_A	89	Crystal Structure Of Cytochrome C6 From Arthrospira		6e-09
3dmi_A	88	Crystallization And Structural Analysis Of Cytochro		9e-09
1kib_A	89	Cytochrome C6 From Arthrospira Maxima: An Assembly		1e-08
3ph2_B	86	Structure Of The Imidazole-Adduct Of The Phormidium		4e-08
2v08_A	86	Structure Of Wild-Type Phormidium Laminosum Cytochr		3e-07
3dp5_A	99	Crystal Structure Of Geobacter Sulfurreducens Omcf		4e-05
3cu4_A	85	Omcf, Outer Membrance Cytochrome F From Geobacter S		8e-05
3dr0_A	93	Structure Of Reduced Cytochrome C6 From Synechococc		8e-05
1ced_A	89	The Structure Of Cytochrome C6 From Monoraphidium B		4e-04
1a2s_A	89	The Solution Nmr Structure Of Oxidized Cytochrome C		4e-04
1c6o_A	89	Crystal Structure Of Oxidized Cytochrome C6 From Th		7e-04

>pdb|2DGE|A Chain A, Crystal Structure Of Oxidized Cytochrome C6a From Arabidopsis Thaliana Length = 105

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 95/104 (91%)
Query: 66  QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRM 125
           QT+DIQ+G +LF +ACIGCHD GGN+IQPGATLF KDL+RNGVDTE+EIY VTYFGKGRM
Sbjct: 1   QTLDIQRGATLFNRACIGCHDTGGNIIQPGATLFTKDLERNGVDTEEEIYRVTYFGKGRM 60
Query: 126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIES 169
           PGFGEKCTPRGQCTFG RLQDE+IKLLA+FVK QADQGWP + +
Sbjct: 61  PGFGEKCTPRGQCTFGPRLQDEEIKLLAEFVKFQADQGWPTVST 104

>pdb|2CE0|A Chain A, Structure Of Oxidized Arabidopsis Thaliana Cytochrome 6a Length = 105

Iteration: 1
 Score =  183 bits (465), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 82/104 (78%), Positives = 93/104 (89%)
Query: 66  QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRM 125
           QT+DIQ+G +LF +AC  CHD GGN+IQPGATLF KDL+RNGVDTE+EIY VTYFGKGRM
Sbjct: 1   QTLDIQRGATLFNRACAACHDTGGNIIQPGATLFTKDLERNGVDTEEEIYRVTYFGKGRM 60
Query: 126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIES 169
           PGFGEKCTPRGQCTFG RLQDE+IKLLA+FVK QADQGWP + +
Sbjct: 61  PGFGEKCTPRGQCTFGPRLQDEEIKLLAEFVKFQADQGWPTVST 104

>pdb|2V07|A Chain A, Structure Of The Arabidopsis Thaliana Cytochrome C6a V52q Variant Length = 105

Iteration: 1
 Score =  182 bits (463), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 82/104 (78%), Positives = 93/104 (89%)
Query: 66  QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRM 125
           QT+DIQ+G +LF +ACI CHD GGN+IQPGATLF KDL+RNGVDTE+EIY  TYFGKGRM
Sbjct: 1   QTLDIQRGATLFNRACIACHDTGGNIIQPGATLFTKDLERNGVDTEEEIYRQTYFGKGRM 60
Query: 126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIES 169
           PGFGEKCTPRGQCTFG RLQDE+IKLLA+FVK QADQGWP + +
Sbjct: 61  PGFGEKCTPRGQCTFGPRLQDEEIKLLAEFVKFQADQGWPTVST 104

>pdb|1GDV|A Chain A, Crystal Structure Of Cytochrome C6 From Red Alga Porphyra Yezoensis At 1.57 A Resolution Length = 85

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 68  VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
            D+  G  +F   C  CH GG N I P  TL    L+ N ++T D I +    GK  MP 
Sbjct: 1   ADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMP- 59
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
                       FG RL DEDI+  A +V SQ+++GW
Sbjct: 60  -----------AFGGRLVDEDIEDAANYVLSQSEKGW 85

>pdb|2ZBO|A Chain A, Crystal Structure Of Low-Redox-Potential Cytochrom C6 From Brown Alga Hizikia Fusiformis At 1.6 A Resolution Length = 86

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 68  VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
            DI  G ++F   C  CH GG NVI P  TL    L  N +++   I +    GK  MP 
Sbjct: 1   ADINHGENVFTANCSACHAGGNNVIMPEKTLQKDALSTNQMNSVGAITYQVTNGKNAMPA 60
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
                       FG RL D+DI+ +A FV SQ+++ W
Sbjct: 61  ------------FGGRLSDDDIEDVASFVLSQSEKSW 85

>pdb|1C6S|A Chain A, The Solution Structure Of Cytochrome C6 From The Thermophilic Cyanobacterium Synechococcus Elongatus, Nmr, 20 Structures Length = 87

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 68  VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
            D+  G  +F   C  CH GGGNV+    TL  + L++ G+ +ED I +    GK  MP 
Sbjct: 1   ADLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMYSEDAIIYQVQHGKNAMP- 59
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWP 165
                       F  RL DE I+ +A +V  QA +GW 
Sbjct: 60  -----------AFAGRLTDEQIQDVAAYVLDQAAKGWA 86

>pdb|1F1F|A Chain A, Crystal Structure Of Cytochrome C6 From Arthrospira Maxima Length = 89

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTY---FGKG 123
           D+  G S+F   C  CH GG NVI    TL   DL +   G D +D +  V Y    GK 
Sbjct: 2   DVAAGASVFSANCAACHMGGRNVIVANKTLSKSDLAKYLKGFD-DDAVAAVAYQVTNGKN 60
Query: 124 RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
            MPGF  + +P         LQ ED+   A +V  QA++GW
Sbjct: 61  AMPGFNGRLSP---------LQIEDV---AAYVVDQAEKGW 89

>pdb|3DMI|A Chain A, Crystallization And Structural Analysis Of Cytochrome C6 From The Diatom Phaeodactylum Tricornutum At 1.5 A Resolution Length = 88

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMP 126
           D+  G  +F   C  CH GG NVI P  TL  + L +   G  TE  I      GK  MP
Sbjct: 2   DVGAGEQIFNANCAACHAGGQNVIMPEKTLEKEALDQYLAGGRTEKSIISQVTGGKNAMP 61
Query: 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
                        FG RL DE+I  +A +V + A+ GW
Sbjct: 62  ------------AFGGRLSDEEIANVAAYVLASAEAGW 87

>pdb|1KIB|A Chain A, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24 Subunits In The Form Of An Oblate Shell Length = 89

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTY---FGKG 123
           D+  G S+F   C  CH GG NVI    TL   DL +   G D +D +  V Y    GK 
Sbjct: 2   DVAAGASVFSANCAACHMGGRNVIVANKTLSKSDLAKYLKGFD-DDAVAAVAYQVTNGKN 60
Query: 124 RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
            MPGF  + +P+         Q ED+   A +V  QA++GW
Sbjct: 61  AMPGFNGRLSPK---------QIEDV---AAYVVDQAEKGW 89

>pdb|3PH2|B Chain B, Structure Of The Imidazole-Adduct Of The Phormidium Laminosum Cytochrome C6 Q51v Variant Length = 86

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
           D+  G  +F   C  CH GG N++    TL  + L++ G+++   I  V   GK  MP F
Sbjct: 3   DLATGAKVFSANCAACHAGGINLVNAEKTLKKEALEKFGMNSIVAITTVVTNGKAGMPAF 62
Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
                 +G      RL D+ I  +A +V  QA++GW
Sbjct: 63  ------KG------RLTDDQIAAVAAYVLDQAEKGW 86

>pdb|2V08|A Chain A, Structure Of Wild-Type Phormidium Laminosum Cytochrome C6 Length = 86

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 68  VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
            D+  G  +F   C  CH GG N++    TL  + L++ G+++   I      GK  MP 
Sbjct: 2   ADLATGAKVFSANCAACHAGGINLVNAEKTLKKEALEKFGMNSIVAITTQVTNGKAGMPA 61
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
           F      +G      RL D+ I  +A +V  QA++GW
Sbjct: 62  F------KG------RLTDDQIAAVAAYVLDQAEKGW 86

>pdb|3DP5|A Chain A, Crystal Structure Of Geobacter Sulfurreducens Omcf With N- Terminal Strep-Tag Ii Length = 99

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 67  TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDT-EDEIYHVTYFGKGRM 125
            V    G  LF   C GCH  GGN + P  TL     + NG+ T  D   ++   G G M
Sbjct: 16  AVPNSGGGELFATHCAGCHPQGGNTVHPEKTLARARREANGIRTVRDVAAYIRNPGPG-M 74
Query: 126 PGFGEKCTP 134
           P FGE   P
Sbjct: 75  PAFGEAMIP 83

>pdb|3CU4|A Chain A, Omcf, Outer Membrance Cytochrome F From Geobacter Sulfurreducens Length = 85

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 76  LFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDT-EDEIYHVTYFGKGRMPGFGEKCTP 134
           LF   C GCH  GGN + P  TL     + NG+ T  D   ++   G G MP FGE   P
Sbjct: 11  LFATHCAGCHPQGGNTVHPEKTLARARREANGIRTVRDVAAYIRNPGPG-MPAFGEAMIP 69

>pdb|3DR0|A Chain A, Structure Of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002 Length = 93

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 19/89 (21%)
Query: 81  CIGCHDGGGNVIQPGATL-------FLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCT 133
           C  CH GG N + P  TL       +L   +      E+ + +    G+G MP       
Sbjct: 14  CAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAYQVTNGQGAMP------- 66
Query: 134 PRGQCTFGARLQDEDIKLLAQFVKSQADQ 162
                 FG RL D DI  +A ++  QA+ 
Sbjct: 67  -----AFGGRLSDADIANVAAYIADQAEN 90

>pdb|1CED|A Chain A, The Structure Of Cytochrome C6 From Monoraphidium Braunii, Nmr, Minimized Average Structure Length = 89

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 68  VDIQKGVSLFRQACIGCHDGGGNVIQPGATL---FLKDLQRNGVDTEDEIYHVTYFGKGR 124
            D+  G ++F   C  CH GGGN + P  TL    ++     G + E  +Y +   GKG 
Sbjct: 2   ADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIEN-GKGA 60
Query: 125 MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160
           MP             +  RL +++I  +A +V  QA
Sbjct: 61  MP------------AWDGRLDEDEIAGVAAYVYDQA 84

>pdb|1A2S|A Chain A, The Solution Nmr Structure Of Oxidized Cytochrome C6 From The Green Alga Monoraphidium Braunii, Minimized Average Structure Length = 89

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 68  VDIQKGVSLFRQACIGCHDGGGNVIQPGATL---FLKDLQRNGVDTEDEIYHVTYFGKGR 124
            D+  G ++F   C  CH GGGN + P  TL    ++     G + E  +Y +   GKG 
Sbjct: 2   ADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIEN-GKGA 60
Query: 125 MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160
           MP             +  RL +++I  +A +V  QA
Sbjct: 61  MP------------AWDGRLDEDEIAGVAAYVYDQA 84

>pdb|1C6O|A Chain A, Crystal Structure Of Oxidized Cytochrome C6 From The Green Algae Scenedesmus Obliquus Length = 89

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 67  TVDIQKGVSLFRQACIGCHDGGGNVIQPGATL---FLKDLQRNGVDTEDEIYHVTYFGKG 123
           + D+  G   F   C  CH GG N + P  TL    ++   + G + E   Y V   GKG
Sbjct: 1   SADLALGKQTFEANCAACHAGGNNSVIPDHTLRKAAMEQFLQGGFNLEAITYQVEN-GKG 59
Query: 124 RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160
            MP             +   L D++I  +A +V  QA
Sbjct: 60  AMP------------AWSGTLDDDEIAAVAAYVYDQA 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
2ce0_A	105	Cytochrome C6; chloroplast, electron transport, he	5e-41
3dp5_A	99	OMCF, cytochrome C family protein; C-type cytochro	3e-29
1gdv_A	85	Cytochrome C6; RED ALGA, electron transport; HET:	6e-29
3ph2_B	86	Cytochrome C6; photosynthesis, cytochrome F, photo	1e-27
1f1f_A	89	Cytochrome C6; heme, protein structure, cyanobacte	6e-27
3cu4_A	85	Cytochrome C family protein; monoheme cytochrome,	5e-26
3dmi_A	88	Cytochrome C6; electron transport, transit peptide	1e-25
1cyi_A	90	Cytochrome C6, cytochrome C553; photosynthesis, el	3e-22
1ls9_A	91	Cytochrome C6; omega loop, antiparallel beta-sheet	6e-21
1c6r_A	89	Cytochrome C6; electron transport protein, reduced	2e-20
3dr0_A	93	Cytochrome C6; photosynthesis, cyanobacteria, elec	2e-20
1f1c_A	129	Cytochrome C549; dimeric cytochrome, electron tran	7e-12
1e29_A	135	Cytochrome C549; electron transport, PSII associat	1e-10
1w5c_T	163	Cytochrome C-550; photosynthesis, water oxidation,	2e-10
1wve_C	80	4-cresol dehydrogenase [hydroxylating] cytochrome	5e-10
1mz4_A	137	Cytochrome C550; PSII associated cytochrome, elect	7e-10
2d0w_A	170	Cytochrome CL; electron transfer, electron transpo	4e-09
2c8s_A	172	Cytochrome C-L; HAEM, heme, electron transport, me	9e-09
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	1e-08
3mk7_C	311	Cytochrome C oxidase, CBB3-type, subunit P; TM hel	1e-08
3mk7_C	311	Cytochrome C oxidase, CBB3-type, subunit P; TM hel	4e-06
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	1e-08
2zon_G	87	Cytochrome C551; nitrite, electron transfer, denit	2e-08
1c75_A	71	Cytochrome C-553; heme, bacillus pasteurii, AB ini	3e-08
2gc4_D	147	Cytochrome C-L; electron transfer, methylamine deh	8e-08
1kx2_A	81	Mono-heme C-type cytochrome SCYA; HAEM protein, fe	2e-07
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	3e-07
3o0r_C	146	Nitric oxide reductase subunit C; oxidoreductase,	4e-06
3cp5_A	124	Cytochrome C; electron transfer protein, electron	2e-05
1cc5_A	83	Cytochrome C5; electron transport (heme protein);	3e-05
2l4d_A	110	SCO1/SENC family protein/cytochrome C; electron tr	3e-05
1gks_A	78	Cytochrome C551; halophilic purple phototrophic ba	1e-04
1w2l_A	99	Cytochrome oxidase subunit II; cytochrome C domain	3e-04

>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A* Length = 105

 Score =  132 bits (334), Expect = 5e-41
 Identities = 82/104 (78%), Positives = 93/104 (89%)

Query: 66  QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRM 125
           QT+DIQ+G +LF +AC  CHD GGN+IQPGATLF KDL+RNGVDTE+EIY VTYFGKGRM
Sbjct: 1   QTLDIQRGATLFNRACAACHDTGGNIIQPGATLFTKDLERNGVDTEEEIYRVTYFGKGRM 60

Query: 126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIES 169
           PGFGEKCTPRGQCTFG RLQDE+IKLLA+FVK QADQGWP + +
Sbjct: 61  PGFGEKCTPRGQCTFGPRLQDEEIKLLAEFVKFQADQGWPTVST 104

>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} Length = 99

 Score =  102 bits (256), Expect = 3e-29
 Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 61  AVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYF 120
                  V    G  LF   C GCH  GGN + P  TL     + NG+ T  ++      
Sbjct: 10  EKGAETAVPNSGGGELFATHCAGCHPQGGNTVHPEKTLARARREANGIRTVRDVAAYIRN 69

Query: 121 GKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160
               MP FGE   P             D   + ++V +  
Sbjct: 70  PGPGMPAFGEAMIP-----------PADALKIGEYVVASF 98

>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A* Length = 85

 Score =  101 bits (253), Expect = 6e-29
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
           D+  G  +F   C  CH GG N I P  TL    L+ N ++T D I +    GK  MP F
Sbjct: 2   DLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMPAF 61

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
           G             RL DEDI+  A +V SQ+++GW
Sbjct: 62  GG------------RLVDEDIEDAANYVLSQSEKGW 85

>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} PDB: 2v08_A* 1c6s_A* Length = 86

 Score = 98.1 bits (244), Expect = 1e-27
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 12/96 (12%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
           D+  G  +F   C  CH GG N++    TL  + L++ G+++   I  V   GK  MP F
Sbjct: 3   DLATGAKVFSANCAACHAGGINLVNAEKTLKKEALEKFGMNSIVAITTVVTNGKAGMPAF 62

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
                         RL D+ I  +A +V  QA++GW
Sbjct: 63  KG------------RLTDDQIAAVAAYVLDQAEKGW 86

>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A* Length = 89

 Score = 96.5 bits (240), Expect = 6e-27
 Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 16/100 (16%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN----GVDTEDEIYHVTYFGKGR 124
           D+  G S+F   C  CH GG NVI    TL   DL +       D    + +    GK  
Sbjct: 2   DVAAGASVFSANCAACHMGGRNVIVANKTLSKSDLAKYLKGFDDDAVAAVAYQVTNGKNA 61

Query: 125 MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
           MPGF              RL    I+ +A +V  QA++GW
Sbjct: 62  MPGFNG------------RLSPLQIEDVAAYVVDQAEKGW 89

>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens} Length = 85

 Score = 93.8 bits (233), Expect = 5e-26
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 11/92 (11%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
               G  LF   C GCH  GGN + P  TL     + NG+ T  ++          MP F
Sbjct: 4   SGAGGGELFATHCAGCHPQGGNTVHPEKTLARARREANGIRTVRDVAAYIRNPGPGMPAF 63

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160
           GE             +   D   + ++V +  
Sbjct: 64  GEA-----------MIPPADALKIGEYVVASF 84

>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} Length = 88

 Score = 93.0 bits (231), Expect = 1e-25
 Identities = 35/98 (35%), Positives = 44/98 (44%), Gaps = 14/98 (14%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMP 126
           D+  G  +F   C  CH GG NVI P  TL  + L +   G  TE  I      GK  MP
Sbjct: 2   DVGAGEQIFNANCAACHAGGQNVIMPEKTLEKEALDQYLAGGRTEKSIISQVTGGKNAMP 61

Query: 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
            FG             RL DE+I  +A +V + A+ GW
Sbjct: 62  AFGG------------RLSDEEIANVAAYVLASAEAGW 87

>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A* Length = 90

 Score = 84.5 bits (209), Expect = 3e-22
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMP 126
           D+  G  +F   C  CH GG N + P  TL    L++  +G    + I +    GKG MP
Sbjct: 2   DLALGAQVFNGNCAACHMGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQVENGKGAMP 61

Query: 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA-DQGW 164
            + +            RL +E+I+ +A++V  QA D  W
Sbjct: 62  AWAD------------RLSEEEIQAVAEYVFKQATDAAW 88

>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1 Length = 91

 Score = 81.1 bits (200), Expect = 6e-21
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMP 126
            +  G  +F   C  CH GG N +    TL    +++   G  T + I +    GKG MP
Sbjct: 5   LLADGKKVFAGNCAACHLGGNNSVLADKTLKKDAIEKYLEGGLTLEAIKYQVNNGKGAMP 64

Query: 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA-DQGW 164
            + +            RL ++DI+ ++ +V  QA +  W
Sbjct: 65  AWAD------------RLDEDDIEAVSNYVYDQAVNSKW 91

>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A* Length = 89

 Score = 79.5 bits (196), Expect = 2e-20
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMP 126
           D+  G   F   C  CH GG N + P  TL    +++   G    + I +    GKG MP
Sbjct: 3   DLALGKQTFEANCAACHAGGNNSVIPDHTLRKAAMEQFLQGGFNLEAITYQVENGKGAMP 62

Query: 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD-QGW 164
            +               L D++I  +A +V  QA    W
Sbjct: 63  AWSG------------TLDDDEIAAVAAYVYDQASGDKW 89

>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP} Length = 93

 Score = 79.6 bits (196), Expect = 2e-20
 Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 20/104 (19%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR-------NGVDTEDEIYHVTYFG 121
           D   G  +F   C  CH GG N + P  TL    L+             E+ + +    G
Sbjct: 2   DAAAGAQVFAANCAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAYQVTNG 61

Query: 122 KGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQ-GW 164
           +G MP FG             RL D DI  +A ++  QA+   W
Sbjct: 62  QGAMPAFGG------------RLSDADIANVAAYIADQAENNKW 93

>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1 Length = 129

 Score = 58.7 bits (141), Expect = 7e-12
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 10/106 (9%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYF-------G 121
           +I+KG  +F  AC  CH  G     P   L  + L       ++    V Y        G
Sbjct: 23  EIKKGQQVFNAACAQCHALGVTRTNPDVNLSPEALALATPPRDNIAALVDYIKNPTTYDG 82

Query: 122 KGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGW 164
              +                  + ++D+  +A ++  Q     + W
Sbjct: 83  FVEISELHPSLKSSDIFPKMRNISEDDLYNVAGYILLQPKVRGEQW 128

>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1 Length = 135

 Score = 55.9 bits (134), Expect = 1e-10
 Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 9/105 (8%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYF-------G 121
               G  +F   C  CH  G        +L L DL       ++ +  V +        G
Sbjct: 25  QFTNGQKIFVDTCTQCHLQGKTKTNNNVSLGLADLAGAEPRRDNVLALVEFLKNPKSYDG 84

Query: 122 KGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA--DQGW 164
           +          +            ++DI  +A +       D+ W
Sbjct: 85  EDDYSELHPNISRPDIYPEMRNYTEDDIFDVAGYTLIAPKLDERW 129

>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1 Length = 163

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 10/106 (9%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
              +G  LF+ AC  CH GG     P   L  + L       ++    V Y         
Sbjct: 51  QYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDG 110

Query: 129 GEKCTPRGQCTFGA-------RLQDEDIKLLAQFVKSQA---DQGW 164
            ++          A        L ++D+  +A  +  +       W
Sbjct: 111 EQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKW 156

>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C* Length = 80

 Score = 52.2 bits (125), Expect = 5e-10
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 20/92 (21%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
               G +L+ + C  CH     V   G  L  + L       E  I  +   G   MP F
Sbjct: 3   QWGSGKNLYDKVCGHCHKPEVGV---GPVLEGRGL------PEAYIKDIVRNGFRAMPAF 53

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160
                        + + DE +  +A+++ S  
Sbjct: 54  P-----------ASYVDDESLTQVAEYLSSLP 74

>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V* Length = 137

 Score = 53.6 bits (128), Expect = 7e-10
 Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 10/106 (9%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYF-------G 121
              +G  LF+ AC  CH GG     P   L  + L       ++    V Y        G
Sbjct: 25  QYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDG 84

Query: 122 KGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGW 164
           +  +                  L ++D+  +A  +  +       W
Sbjct: 85  EQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKW 130

>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans} Length = 170

 Score = 51.9 bits (124), Expect = 4e-09
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 18/93 (19%)

Query: 69  DIQKGVSLFRQACIGCH--DGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFG-KGRM 125
            + KG  ++ ++C GCH   G G V   G  L           T+  ++   + G  G M
Sbjct: 47  CLPKGEEIYLESCSGCHGHIGEGKV---GPGLNDSYWTYPKNTTDKGLFETIFGGANGMM 103

Query: 126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKS 158
              G+             L+ +++  L  +++ 
Sbjct: 104 GPHGQ------------DLELDNMLKLIAWIRH 124

>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1 Length = 172

 Score = 51.2 bits (122), Expect = 9e-09
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 18/92 (19%)

Query: 70  IQKGVSLFRQACIGCH--DGGGNVIQPGATLFLKDLQRNGVDTEDEIYH-VTYFGKGRMP 126
           ++ G SLF  +C GCH     G     G  L           T+  ++  +     G M 
Sbjct: 54  LRNGESLFATSCSGCHGHLAEGK---LGPGLNDNYWTYPSNTTDVGLFATIFGGANGMMG 110

Query: 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKS 158
                            L  +++     +++ 
Sbjct: 111 P------------HNENLTPDEMLQTIAWIRH 130

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Length = 689

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 19/107 (17%)

Query: 65  AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGR 124
             T  I+ G  L+   C  CH  G + +  G    L DL++   +       + + G+  
Sbjct: 590 NDTASIEAGAKLYDGYCSQCH--GIHAVSGGV---LPDLRKLTPEKHQMFLGILFGGRVP 644

Query: 125 --MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIES 169
             MP F +                E +  + Q++  +A     + ++
Sbjct: 645 DGMPSFAD------------AFTPEQVDQIHQYLIKRAHDLHQEGDT 679

>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} Length = 311

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 25/145 (17%), Positives = 39/145 (26%), Gaps = 14/145 (9%)

Query: 16  LATIYRLSPLKSFHWKQQLSMELELQKYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVS 75
           L     + P     W Q+   E E+ + D      +                  ++ G  
Sbjct: 79  LGNWKGVLPGYEGGWTQEKQWEREVAQADEKYGP-IFAKYAAMSVEEVAQDPQAVKMGAR 137

Query: 76  LFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPR 135
           LF   C  CH            L      R G D       +       MP         
Sbjct: 138 LFANYCSICHGSDAKGSLGFPNL-ADQDWRWGGDAASIKTSILNGRIAAMPA-------- 188

Query: 136 GQCTFGARLQDEDIKLLAQFVKSQA 160
               +G  + +E +K +A FV+   
Sbjct: 189 ----WGQAIGEEGVKNVAAFVRKDL 209

>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} Length = 311

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 16/97 (16%)

Query: 65  AQTVDIQKGVSLFRQACIGCH--DGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK 122
               D+  G +++ Q C  CH   G G        L        G  +  ++      G+
Sbjct: 217 GTDADLSAGKNVYAQTCAVCHGQGGEGMAALGAPKLNSAAGWIYGS-SLGQLQQTIRHGR 275

Query: 123 -GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKS 158
            G+MP   +             L D+ + LLA +V S
Sbjct: 276 NGQMPAQQQ------------YLGDDKVHLLAAYVYS 300

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Length = 677

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 21/102 (20%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHV----TYFGKGR 124
            ++ G  L+   C+ CH G   V + G    + +L        + + +         +G 
Sbjct: 592 KVEAGTMLYVANCVFCH-GVPGVDRGGN---IPNLGYMDASYIENLPNFVFKGPAMVRG- 646

Query: 125 MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPK 166
           MP F              +L  +D++ L  F++  AD   PK
Sbjct: 647 MPDFTG------------KLSGDDVESLKAFIQGTADAIRPK 676

>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans} Length = 87

 Score = 48.5 bits (115), Expect = 2e-08
 Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 17/100 (17%)

Query: 63  SLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLK--DLQRNGVDTEDEIYHVTYF 120
           + A       G  L+R AC+ CH  G       A                 D +      
Sbjct: 2   ADAPAQLDPAGEKLYRSACVVCHASGV----ANAPKLGDKQAWAPFLAQGADALLATVLK 57

Query: 121 GKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160
           GKG MP  G           G    +  ++    ++   A
Sbjct: 58  GKGAMPPRG-----------GTAADEATLRAAVAYMMDAA 86

>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A* Length = 71

 Score = 47.5 bits (113), Expect = 3e-08
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 25/90 (27%)

Query: 73  GVSLFRQACIGCH--DGGGNVIQPGATLFLKDLQRNGVD-TEDEIYHVTYFGKGRMPGFG 129
             ++ +Q CI CH  D  G             + + G + +E+EI  +   G+G MPG  
Sbjct: 3   AEAVVQQKCISCHGGDLTGASA--------PAIDKAGANYSEEEILDIILNGQGGMPGG- 53

Query: 130 EKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159
                          +  + + +A ++  +
Sbjct: 54  -------------IAKGAEAEAVAAWLAEK 70

>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D* Length = 147

 Score = 48.0 bits (114), Expect = 8e-08
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 18/92 (19%)

Query: 70  IQKGVSLFRQACIGCH--DGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFG-KGRMP 126
           + +   L+   C GCH     G +   G  L        G +T+  ++   Y G  G+M 
Sbjct: 46  LPEAEELYAGMCSGCHGHYAEGKI---GPGLNDAYWTYPGNETDVGLFSTLYGGATGQMG 102

Query: 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKS 158
                            L  +++     +V+ 
Sbjct: 103 P------------MWGSLTLDEMLRTMAWVRH 122

>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A* Length = 81

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 12/88 (13%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
           D+Q   +++ +AC  CH  G  V     +    D +       D +      G   MP  
Sbjct: 2   DLQDAEAIYNKACTVCHSMG--VAGAPKSHNTADWEPRLAKGVDNLVKSVKTGLNAMP-- 57

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFV 156
                P G C       DED K   +F+
Sbjct: 58  -----PGGMC---TDCTDEDYKAAIEFM 77

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Length = 668

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 20/100 (20%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGR---M 125
            +Q G  L+ Q C  CH  G   I  G    + DL+++   T +    +   G  +   M
Sbjct: 579 QVQAGKQLYGQFCSVCH--GMGTISGGL---IPDLRQSSDATREHFQQIVLQGALKPLGM 633

Query: 126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWP 165
           P F +             L+ E+++ +  +V S+  + + 
Sbjct: 634 PSFDD------------SLKPEEVEQIKLYVMSREYEDYM 661

>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa} Length = 146

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 25/112 (22%)

Query: 65  AQTVDIQKGVSLF-RQACIGCH--DGGGNVIQP-----GATLFLKDLQRNGVDTEDEIYH 116
           A +  + +G  ++ +  C+GCH   G G    P           ++     +    +I  
Sbjct: 44  AMSAAVVRGKLVWEQNNCVGCHTLLGEGAYFAPELGNVVGRRGGEEGFNTFLQAWMKIQP 103

Query: 117 VTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD---QGWP 165
           +   G+  MP F               L +  +  LA+F+K  +      WP
Sbjct: 104 LNVPGRRAMPQFH--------------LSEGQVDDLAEFLKWSSKIDTNQWP 141

>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus} Length = 124

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 28/116 (24%)

Query: 60  AAVSLAQTVD---IQKGVSLFRQACIGCHDGGGNVIQPGAT----------LFLKDLQRN 106
             VSL + +D    Q+G  LF   C  CH      I P             +    L  N
Sbjct: 21  KQVSLGEQIDAALAQQGEQLFNTYCTACHRLDERFIGPALRDVTKRRGPVYIMNVMLNPN 80

Query: 107 GVDTEDEIYHVTYFGKG-RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD 161
           G+     +        G  M                  L +E  + + ++++  A+
Sbjct: 81  GMIQRHPVMKQLVQEYGTMMTDMA--------------LSEEQARAILEYLRQVAE 122

>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1 Length = 83

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 16/88 (18%)

Query: 71  QKGVSLFRQACIGCHDGGGN---VIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
           + G  +  + C  CH  G      +   A    +   + G+   D +   +  G   MP 
Sbjct: 5   RSGDDVVAKYCNACHGTGLLNAPKVGDSAAWKTRADAKGGL---DGLLAQSLSGLNAMP- 60

Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQF 155
                 P+G C   A   D+++K     
Sbjct: 61  ------PKGTC---ADCSDDELKAAIGK 79

>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida} Length = 110

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 40/123 (32%)

Query: 69  DIQKGVSLFRQACIGCHDGGG-------------NVIQPGATLFLKDLQRNG---VDTED 112
               G  +FR  C  CH  G               V +     +L    +     +  +D
Sbjct: 2   SFTSGEQIFRTRCSSCHTVGNTEPGQPGIGPDLLGVTRQRDANWLVRWLKVPDQMLAEKD 61

Query: 113 EIYHVTY--FGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ--------ADQ 162
            +  + +  + +  MP                 L D ++  L  +++ +         ++
Sbjct: 62  PLAMLLFEQYNRLAMPNMR--------------LGDAEVSALISYLEEETARLQTPVTNR 107

Query: 163 GWP 165
           G P
Sbjct: 108 GIP 110

>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1 Length = 78

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 17/83 (20%)

Query: 75  SLFRQACIGCHDGGGNVIQPGATLFLKDLQ-RNGVDTEDEIYHVTYFGKGRMPGFGEKCT 133
           +     C  CHD G      GA          +   + DE+   T  GKG MP       
Sbjct: 8   NGTAPTCSSCHDRGVA----GAPELNAPEDWADRPSSVDELVESTLAGKGAMP------- 56

Query: 134 PRGQCTFGARLQDEDIKLLAQFV 156
                        ED+    +++
Sbjct: 57  AYDGR-----ADREDLVKAIEYM 74

>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus} Length = 99

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 27/110 (24%)

Query: 65  AQTVDIQKGVSLFRQ-ACIGCH-DGGGNVIQP------GATLFLKDLQRNGVDTE----- 111
           +     + G  L+R+ AC  CH   G  ++ P      G+T   +D      D       
Sbjct: 1   STMPLAELGARLYREKACFSCHSIDGSRLVGPSFKGLYGSTRTFEDGTTAVADENYLRES 60

Query: 112 --DEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159
                  V       MP               A L + ++  L +F+K Q
Sbjct: 61  ILQPGAKVVQGYPNVMPASY------------ASLSEREVAALIEFIKQQ 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
2ce0_A	105	Cytochrome C6; chloroplast, electron transport, he	99.85
3ph2_B	86	Cytochrome C6; photosynthesis, cytochrome F, photo	99.81
1gdv_A	85	Cytochrome C6; RED ALGA, electron transport; HET:	99.8
3cu4_A	85	Cytochrome C family protein; monoheme cytochrome,	99.76
3dmi_A	88	Cytochrome C6; electron transport, transit peptide	99.76
1c6r_A	89	Cytochrome C6; electron transport protein, reduced	99.74
1ls9_A	91	Cytochrome C6; omega loop, antiparallel beta-sheet	99.73
3dr0_A	93	Cytochrome C6; photosynthesis, cyanobacteria, elec	99.73
1cyi_A	90	Cytochrome C6, cytochrome C553; photosynthesis, el	99.73
1f1f_A	89	Cytochrome C6; heme, protein structure, cyanobacte	99.72
3dp5_A	99	OMCF, cytochrome C family protein; C-type cytochro	99.72
2zon_G	87	Cytochrome C551; nitrite, electron transfer, denit	99.62
1gks_A	78	Cytochrome C551; halophilic purple phototrophic ba	99.59
1wve_C	80	4-cresol dehydrogenase [hydroxylating] cytochrome	99.59
1w5c_T	163	Cytochrome C-550; photosynthesis, water oxidation,	99.57
1kx2_A	81	Mono-heme C-type cytochrome SCYA; HAEM protein, fe	99.56
1w2l_A	99	Cytochrome oxidase subunit II; cytochrome C domain	99.55
2zzs_A	103	Cytochrome C554; C-type cytochrome, electron trans	99.54
1c75_A	71	Cytochrome C-553; heme, bacillus pasteurii, AB ini	99.54
2gc4_D	147	Cytochrome C-L; electron transfer, methylamine deh	99.54
1mz4_A	137	Cytochrome C550; PSII associated cytochrome, elect	99.53
1ccr_A	112	Cytochrome C; electron transport(cytochrome); HET:	99.52
1cc5_A	83	Cytochrome C5; electron transport (heme protein);	99.52
1cno_A	87	Cytochrome C552; electron transport, pseudomonas n	99.52
1f1c_A	129	Cytochrome C549; dimeric cytochrome, electron tran	99.51
1c53_A	79	Cytochrome C553; electron transport; HET: HEM; 1.8	99.5
3o0r_C	146	Nitric oxide reductase subunit C; oxidoreductase,	99.5
2c1d_B	137	SOXX; sulfur oxidation, cytochrome-C-type, oxidore	99.48
2w9k_A	114	Cytochrome C, cytochrome C555; electron transport,	99.47
1hro_A	106	Cytochrome C2; electron transport, photosynthesis,	99.47
1ycc_A	108	Cytochrome C; electron transport (cytochrome); HET	99.47
2c8s_A	172	Cytochrome C-L; HAEM, heme, electron transport, me	99.45
2exv_A	82	Cytochrome C-551; alpha helix, heme C, electron tr	99.45
2d0w_A	170	Cytochrome CL; electron transfer, electron transpo	99.45
2zxy_A	87	Cytochrome C552, cytochrome C555; heme protein, ox	99.44
1h32_B	138	Cytochrome C, SOXX; electron transfer, sulfur cycl	99.44
2d0s_A	79	Cytochrome C, cytochrome C552; heme protein, elect	99.43
1i54_A	103	Cytochrome C; zinc-porphyrin, mixed-metal, electro	99.43
1co6_A	107	Protein (cytochrome C2); electron transport(heme p	99.43
2l4d_A	110	SCO1/SENC family protein/cytochrome C; electron tr	99.41
3cp5_A	124	Cytochrome C; electron transfer protein, electron	99.4
1a56_A	81	C-551, ferricytochrome C-552; hemoprotein, prokary	99.39
1e29_A	135	Cytochrome C549; electron transport, PSII associat	99.38
1cch_A	82	Cytochrome C551; electron transport; HET: HEM; NMR	99.38
3c2c_A	112	Cytochrome C2; electron transport protein (cytochr	99.38
1c52_A	131	Cytochrome-C552; electron transport protein, MAD,	99.37
1qn2_A	100	Cytochrome CH; electron transport; HET: HEC; 2.01A	99.37
1c2n_A	137	Cytochrome C2; electron transport; HET: HEC; NMR {	99.37
3mk7_C	311	Cytochrome C oxidase, CBB3-type, subunit P; TM hel	99.37
3vrd_A	174	FCCA subunit, flavocytochrome C heme subunit; sulf	99.35
1jdl_A	121	C552, cytochrome C2, ISO-2; alpha helix, electron	99.3
1ayg_A	80	Cytochrome C-552; electron transport, porphyrin, f	99.28
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.28
3oa8_B	208	SOXX; cytochrome, sulfur oxidation pathway, heme-b	99.28
1m70_A	190	Cytochrome C4; electron transport, diheme protein;	99.25
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.25
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.24
1h1o_A	183	Cytochrome C-552; electron transport, electron tra	99.24
155c_A	135	Cytochrome C550; electron transport; HET: HEM; 2.5	99.24
1i8o_A	114	Cytochrome C2; electron transport, heme, ammonia,	99.22
2zoo_A	442	Probable nitrite reductase; electron transfer, ele	99.19
3m97_X	140	Cytochrome C-552, cytochrome C552; electron transp	99.18
2bh4_X	134	Cytochrome C-550; C-type cytochrome, heme, electro	99.17
3mk7_C	311	Cytochrome C oxidase, CBB3-type, subunit P; TM hel	99.16
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.14
1vyd_A	116	Cytochrome C2; electron transport, redox, mutant;	99.13
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.11
2xts_B	205	Cytochrome; oxidoreductase-electron transport comp	99.11
2yev_B	337	Cytochrome C oxidase subunit 2; electron transport	98.65
1h1o_A	183	Cytochrome C-552; electron transport, electron tra	99.06
1cxc_A	124	Cytochrome C2; electron transport (cytochrome); HE	99.03
3vrd_A	174	FCCA subunit, flavocytochrome C heme subunit; sulf	99.03
1m70_A	190	Cytochrome C4; electron transport, diheme protein;	98.93
1h32_A	261	SOXA, diheme cytochrome C; electron transfer, sulf	98.71
2c1d_A	264	SOXA; sulfur oxidation, cytochrome-C-type, oxidore	98.71
3oa8_A	275	SOXA; cytochrome, sulfur oxidation pathway, heme-b	98.68
2blf_B	81	SORB, sulfite\:cytochrome C oxidoreductase subunit	98.61
3a9f_A	92	Cytochrome C; alpha helix, mono heme, electron tra	98.57
3oa8_A	275	SOXA; cytochrome, sulfur oxidation pathway, heme-b	98.5
1jmx_A	494	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.2
1zzh_A	328	Cytochrome C peroxidase; heme groups, oxidoreducta	98.09
2c1d_A	264	SOXA; sulfur oxidation, cytochrome-C-type, oxidore	98.04
1e8e_A	124	Cytochrome C''; oxidoreductase(cytochrome), ligand	97.99
1pby_A	489	Quinohemoprotein amine dehydrogenase 60 kDa subuni	97.97
1iqc_A	308	DI-heme peroxidase; proteobacteria, B subdivision,	97.95
2vhd_A	323	Cytochrome C551 peroxidase; iron, heme, transport,	97.92
3o5c_A	320	Cytochrome C551 peroxidase; diheme cytochrome, hyd	97.88
1dw0_A	112	Cytochrome C; asparagine ligation, oxygen binding,	97.84
1h32_A	261	SOXA, diheme cytochrome C; electron transfer, sulf	97.81
2c1v_A	338	DI-HAEM cytochrome C peroxidase; electron transpor	97.78
3mk7_B	203	Cytochrome C oxidase, CBB3-type, subunit O; TM hel	97.74
1nml_A	326	DI-HAEM cytochrome C peroxidase; oxidoreductase, e	97.69
3hq9_A	345	Cytochrome C551 peroxidase; oxidoreductase; HET: H	97.58
4aan_A	341	Cytochrome C551 peroxidase; oxidoreductase, multih	97.33
3cx5_D	248	Cytochrome C1, heme protein, mitochondrial; comple	97.24
3sjl_A	373	Methylamine utilization protein MAUG; MAUG, C-heme	97.11
2yiu_B	263	Cytochrome C1, heme protein; oxidoreductase; HET:	96.99
1pp9_D	241	Cytochrome C-1, cytochrome C1, heme protein, mitoc	96.92
2fw5_A	139	DHC, diheme cytochrome C; electron transfer, elect	95.36
2fwt_A	125	DHC, diheme cytochrome C; diheme protein, electron	95.25
1zrt_D	258	Cytochrome C1; cytochrome BC1, membrane protein, h	95.24
2qjy_B	269	Cytochrome C1; cytochrome B, 8 TM helixces cytochr	95.04
1jmx_A	494	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	94.72
1iqc_A	308	DI-heme peroxidase; proteobacteria, B subdivision,	94.04
2c1v_A	338	DI-HAEM cytochrome C peroxidase; electron transpor	93.39
2vhd_A	323	Cytochrome C551 peroxidase; iron, heme, transport,	92.45
3u99_A	148	Diheme cytochrome C; cytochrome C fold, electron t	91.7
3o5c_A	320	Cytochrome C551 peroxidase; diheme cytochrome, hyd	89.81
1zzh_A	328	Cytochrome C peroxidase; heme groups, oxidoreducta	86.22
4aan_A	341	Cytochrome C551 peroxidase; oxidoreductase, multih	80.69
3hq9_A	345	Cytochrome C551 peroxidase; oxidoreductase; HET: H	80.64
1nml_A	326	DI-HAEM cytochrome C peroxidase; oxidoreductase, e	80.24

>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*

Probab=99.85  E-value=2.3e-21  Score=136.31  Aligned_cols=103  Identities=79%  Similarity=1.402  Sum_probs=83.0

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQD  146 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd  146 (172)
                      ++++++|++||+.+|++||+.++.+...+.++..|.|++.+..+.+.|...|.+|.+.||+|.....+.++..|...||+
T Consensus         2 a~~~~~G~~l~~~~Ca~CHg~~g~g~~~g~~~~~p~l~~~~~~~~~~l~~~i~~g~~~Mp~~~~~~~~~~M~~~~~~ls~   81 (105)
T 2ce0_A            2 TLDIQRGATLFNRACAACHDTGGNIIQPGATLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQD   81 (105)
T ss_dssp             -CCHHHHHHHHHHHTTTTSGGGCCSSSTTCCSSHHHHHHTTCCSHHHHHHHHHHCBTTBCBCBTTCCSGGGBCSSCCBCH
T ss_pred             chhHHHHHHHHHHHHHHhCCCCCCcCCCCcccCCcchhhcCCCCHHHHHHHHHhCcCCCCcccccccccccccccCCCCH
Confidence            35678999999999999999888765556555678998876678999999999999999999643344455555578999


Q ss_pred             HHHHHHHHHHHhhhhCCCCCcCC
Q 030717          147 EDIKLLAQFVKSQADQGWPKIES  169 (172)
Q Consensus       147 ~ei~~VaaYl~~~~~~gw~~~~~  169 (172)
                      +||++|++||+++..++|+++++
T Consensus        82 ~ei~~l~~yl~~~~~~~w~~~~~  104 (105)
T 2ce0_A           82 EEIKLLAEFVKFQADQGWPTVST  104 (105)
T ss_dssp             HHHHHHHHHHHHHHHHTCCC---
T ss_pred             HHHHHHHHHHHHhhhcCCCCcCC
Confidence            99999999999999999999876

>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*

Probab=99.81  E-value=3.4e-20  Score=125.53  Aligned_cols=85  Identities=35%  Similarity=0.668  Sum_probs=73.4

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDE  147 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~  147 (172)
                      +++++|++||+.+|++||+.++.+...++.+..+.+..+...+.+.+...+++|.+.||+|+            ..||++
T Consensus         2 ~~~~~G~~l~~~~C~~CHg~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~g~~~Mp~~~------------~~ls~~   69 (86)
T 3ph2_B            2 ADLATGAKVFSANCAACHAGGINLVNAEKTLKKEALEKFGMNSIVAITTVVTNGKAGMPAFK------------GRLTDD   69 (86)
T ss_dssp             CCHHHHHHHHHHHTHHHHCSSSCTTCSSSSCCHHHHHHTTCCSHHHHHHHHHHCBTTBCCCT------------TTSCHH
T ss_pred             ccHHHHHHHHHHHhHHhCCCCCCCCCCCCccChhhHHhccCCCHHHHHHHHHhCCCCCCCcc------------cCCCHH
Confidence            46889999999999999998776555555555666666666789999999999999999997            689999


Q ss_pred             HHHHHHHHHHhhhhCCC
Q 030717          148 DIKLLAQFVKSQADQGW  164 (172)
Q Consensus       148 ei~~VaaYl~~~~~~gw  164 (172)
                      |+++|++||.++..++|
T Consensus        70 ei~~l~~yl~~~~~~~w   86 (86)
T 3ph2_B           70 QIAAVAAYVLDQAEKGW   86 (86)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhhccC
Confidence            99999999999999999

>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*

Probab=99.80  E-value=5.1e-20  Score=124.40  Aligned_cols=84  Identities=43%  Similarity=0.734  Sum_probs=73.3

Q ss_pred             hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 030717           69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDED  148 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~e  148 (172)
                      ++++|++||..+|++||+.++.+..++.....|.+..++..+.+.+...+++|...||+|.            ..||++|
T Consensus         2 ~~~~G~~l~~~~C~~CHg~~g~g~~~~~~~~~~~l~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~ls~~e   69 (85)
T 1gdv_A            2 DLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMPAFG------------GRLVDED   69 (85)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGCCSSSTTSCCCHHHHHHTTCCSHHHHHHHHHHCBTTBCCCT------------TTSCHHH
T ss_pred             cHHHHHHHHHHhhHhhCCCCcCCCCCCCCCCcHHHHHccCCCHHHHHHHHHhCcCCCCCCC------------CCCCHHH
Confidence            5789999999999999998877655554456788887776779999999999999999996            6899999


Q ss_pred             HHHHHHHHHhhhhCCC
Q 030717          149 IKLLAQFVKSQADQGW  164 (172)
Q Consensus       149 i~~VaaYl~~~~~~gw  164 (172)
                      +++|++||.++..++|
T Consensus        70 i~~l~~yl~~~~~~~w   85 (85)
T 1gdv_A           70 IEDAANYVLSQSEKGW   85 (85)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhcCC
Confidence            9999999999999998

>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}

Probab=99.76  E-value=6.8e-19  Score=119.56  Aligned_cols=81  Identities=27%  Similarity=0.440  Sum_probs=66.1

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC-CCCH
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGA-RLQD  146 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~-~Lsd  146 (172)
                      +++++|++||+.+|++||+.+|.+..++..+..|.|.++...+.+.+...+++|...||+|.            . .||+
T Consensus         3 g~~~~G~~ly~~~Ca~CHg~~g~g~~~~~~l~~p~l~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~~ls~   70 (85)
T 3cu4_A            3 GSGAGGGELFATHCAGCHPQGGNTVHPEKTLARARREANGIRTVRDVAAYIRNPGPGMPAFG------------EAMIPP   70 (85)
T ss_dssp             ----CHHHHHHHHTTTTSGGGCCSSSTTCCCCHHHHHHTTCCSHHHHHHHTTSCCTTSCCCC------------TTTSCH
T ss_pred             ccHHHHHHHHHHHhHHhCCCCCCCCCCCCCCCchhhhhcCCCCHHHHHHHHHcCCCCCCCCC------------CCCCCH
Confidence            56789999999999999998877655444455788887766789999999999998999996            5 7999


Q ss_pred             HHHHHHHHHHHhhh
Q 030717          147 EDIKLLAQFVKSQA  160 (172)
Q Consensus       147 ~ei~~VaaYl~~~~  160 (172)
                      +||++|++||.+++
T Consensus        71 ~ei~~l~~yi~~~~   84 (85)
T 3cu4_A           71 ADALKIGEYVVASF   84 (85)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999874

>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1

Probab=99.76  E-value=9.6e-19  Score=118.94  Aligned_cols=86  Identities=41%  Similarity=0.694  Sum_probs=67.0

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQ  145 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Ls  145 (172)
                      +|+++|++||+.+|++||+.++.+..+..++....+..+  +..+.+.|...+.+|...||+|.            ..||
T Consensus         1 gd~~~G~~l~~~~C~~CHg~~g~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~i~~g~~~Mp~~~------------~~ls   68 (88)
T 3dmi_A            1 GDVGAGEQIFNANCAACHAGGQNVIMPEKTLEKEALDQYLAGGRTEKSIISQVTGGKNAMPAFG------------GRLS   68 (88)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSSSTTSCSSHHHHHHHSTTCSSHHHHHHHHHHCBTTBCCCT------------TTSC
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHHhcCCCHHHHHHHHHcCcCCCCCcC------------CCCC
Confidence            367899999999999999976654443333222333222  23478999999999999999997            6899


Q ss_pred             HHHHHHHHHHHHhhhhCCCC
Q 030717          146 DEDIKLLAQFVKSQADQGWP  165 (172)
Q Consensus       146 d~ei~~VaaYl~~~~~~gw~  165 (172)
                      ++||++|++||.++..++|+
T Consensus        69 ~~ei~~l~~yl~~~~~~~w~   88 (88)
T 3dmi_A           69 DEEIANVAAYVLASAEAGWE   88 (88)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHhccCCC
Confidence            99999999999999999995

>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*

Probab=99.74  E-value=3.8e-18  Score=116.36  Aligned_cols=85  Identities=32%  Similarity=0.566  Sum_probs=66.9

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQ  145 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Ls  145 (172)
                      +++++|++||+.+|++||+.++.+..+.+.+..+.+..+  +..+.+.|...+.+|...||+|.            ..||
T Consensus         2 ~~~~~G~~l~~~~C~~CHg~~g~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~ls   69 (89)
T 1c6r_A            2 ADLALGKQTFEANCAACHAGGNNSVIPDHTLRKAAMEQFLQGGFNLEAITYQVENGKGAMPAWS------------GTLD   69 (89)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSSSTTCCSSHHHHHHHSTTCSSHHHHHHHHHHCBTTBCCCT------------TTSC
T ss_pred             ccHHHHHHHHHHHHHHHcCCCCCCCCCCcCcCchhHHHHhcCCCCHHHHHHHHHcCCCCCCCCC------------CcCC
Confidence            467899999999999999987765544444433443322  23468999999999999999997            6899


Q ss_pred             HHHHHHHHHHHHhhh-hCCC
Q 030717          146 DEDIKLLAQFVKSQA-DQGW  164 (172)
Q Consensus       146 d~ei~~VaaYl~~~~-~~gw  164 (172)
                      ++|+++|++||+++. .++|
T Consensus        70 ~~ei~~l~~yl~~~~~~~~W   89 (89)
T 1c6r_A           70 DDEIAAVAAYVYDQASGDKW   89 (89)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHccCCCC
Confidence            999999999999987 5667

>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1

Probab=99.73  E-value=9.3e-18  Score=115.12  Aligned_cols=86  Identities=30%  Similarity=0.558  Sum_probs=67.9

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc--CCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARL  144 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~--~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~L  144 (172)
                      ++++++|++||+.+|++||+.++.+..+++.+..+.+..  .+..+.+.|...+.+|...||+|.            ..|
T Consensus         3 ~~~~~~G~~l~~~~C~~CHg~~g~g~~~~p~l~~~~~~~~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~l   70 (91)
T 1ls9_A            3 AELLADGKKVFAGNCAACHLGGNNSVLADKTLKKDAIEKYLEGGLTLEAIKYQVNNGKGAMPAWA------------DRL   70 (91)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGCCSSSTTSCSSHHHHHHHSTTCSCHHHHHHHHHHCBTTBCCCT------------TTS
T ss_pred             HHHHHHHHHHHHHHhHHhCCCCCCCCCCCCCCCchhHHHhccCCCCHHHHHHHHHcCcCCCcchh------------hhC
Confidence            356789999999999999998776544444444444332  123468999999999999999997            689


Q ss_pred             CHHHHHHHHHHHHhhh-hCCC
Q 030717          145 QDEDIKLLAQFVKSQA-DQGW  164 (172)
Q Consensus       145 sd~ei~~VaaYl~~~~-~~gw  164 (172)
                      |++||++|++||+++. .++|
T Consensus        71 s~~ei~~l~~yl~~~~~~~~W   91 (91)
T 1ls9_A           71 DEDDIEAVSNYVYDQAVNSKW   91 (91)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHhccccCC
Confidence            9999999999999987 5777

>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}

Probab=99.73  E-value=4.3e-18  Score=116.33  Aligned_cols=85  Identities=34%  Similarity=0.678  Sum_probs=65.6

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC------CCCCH-HHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN------GVDTE-DEIYHVTYFGKGRMPGFGEKCTPRGQCTF  140 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~------~~~~~-~~l~~~i~~g~~~MP~~~~~~~~~~~~~~  140 (172)
                      +|+++|++||+.+|++||+.+|.+..+.+++....+..+      +..+. +.|...+.+|...||+|.           
T Consensus         1 ~d~~~G~~l~~~~C~~CHg~~g~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~g~~~Mp~~~-----------   69 (93)
T 3dr0_A            1 ADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAYQVTNGQGAMPAFG-----------   69 (93)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSSSTTCCSSHHHHHHHSTTTTTTSSCHHHHHHHHHHHCBTTBCCCB-----------
T ss_pred             CcHHHHHHHHHHHhHHhcCCCCCCCCCCcccCcchHHHHHhhcccccccHHHHHHHHHHcCCCCCCCCC-----------
Confidence            367899999999999999988765554444333322111      12255 889999999999999997           


Q ss_pred             CCCCCHHHHHHHHHHHHhhhhCC-C
Q 030717          141 GARLQDEDIKLLAQFVKSQADQG-W  164 (172)
Q Consensus       141 ~~~Lsd~ei~~VaaYl~~~~~~g-w  164 (172)
                       ..||++|+++|++||.++..++ |
T Consensus        70 -~~ls~~ei~~l~~yl~~l~~~~~w   93 (93)
T 3dr0_A           70 -GRLSDADIANVAAYIADQAENNKW   93 (93)
T ss_dssp             -TTBCHHHHHHHHHHHHHHHHTTCC
T ss_pred             -CCCCHHHHHHHHHHHHHHHhcCCC
Confidence             6899999999999999998665 5

>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*

Probab=99.73  E-value=9.3e-18  Score=114.76  Aligned_cols=85  Identities=35%  Similarity=0.616  Sum_probs=68.0

Q ss_pred             hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 030717           69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQD  146 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd  146 (172)
                      ++++|++||+.+|++||+.++.+..++..+..+.+..+  +..+.+.|...+.+|...||+|.            ..||+
T Consensus         2 ~~~~G~~l~~~~C~~CHg~~g~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~ls~   69 (90)
T 1cyi_A            2 DLALGAQVFNGNCAACHMGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQVENGKGAMPAWA------------DRLSE   69 (90)
T ss_dssp             CHHHHHHHHHHHTHHHHGGGCCSSSTTSCSSHHHHHHHSTTCSSHHHHHHHHHHCBTTBCCCT------------TTSCH
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChHHHHHHhcCCCCHHHHHHHHhcCCCCCCccc------------ccCCH
Confidence            57899999999999999987765544444444444322  23468999999999999999997            68999


Q ss_pred             HHHHHHHHHHHhhh-hCCCC
Q 030717          147 EDIKLLAQFVKSQA-DQGWP  165 (172)
Q Consensus       147 ~ei~~VaaYl~~~~-~~gw~  165 (172)
                      +|+++|++||+++. .++|.
T Consensus        70 ~ei~~l~~yl~~~~~~~~W~   89 (90)
T 1cyi_A           70 EEIQAVAEYVFKQATDAAWK   89 (90)
T ss_dssp             HHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhcccccCCC
Confidence            99999999999987 67885

>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*

Probab=99.72  E-value=5.5e-18  Score=115.37  Aligned_cols=85  Identities=38%  Similarity=0.612  Sum_probs=65.7

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc----CCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR----NGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGAR  143 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~----~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~  143 (172)
                      +++++|++||..+|++||+.++.+...++.+....+..    ....+.+.+...+.+|...||+|.            ..
T Consensus         1 g~~~~G~~l~~~~C~~CHg~~g~g~~~~P~L~~~~~~~~l~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~   68 (89)
T 1f1f_A            1 GDVAAGASVFSANCAACHMGGRNVIVANKTLSKSDLAKYLKGFDDDAVAAVAYQVTNGKNAMPGFN------------GR   68 (89)
T ss_dssp             -CHHHHHHHHHHHTHHHHGGGCCSSSTTCCSSHHHHHHHSTTTTTCHHHHHHHHHHHCBTTBCCCT------------TT
T ss_pred             CcHHHHHHHHHHHhHHhCCCCCCCCcCCCCCCHHHHHHHhhccCccCHHHHHHHHHcCCCCCCccc------------cC
Confidence            35789999999999999998876544344443222221    111237889999999999999997            68


Q ss_pred             CCHHHHHHHHHHHHhhhhCCC
Q 030717          144 LQDEDIKLLAQFVKSQADQGW  164 (172)
Q Consensus       144 Lsd~ei~~VaaYl~~~~~~gw  164 (172)
                      ||++|+++|++||.++..++|
T Consensus        69 ls~~ei~~l~~yl~~~~~~~w   89 (89)
T 1f1f_A           69 LSPLQIEDVAAYVVDQAEKGW   89 (89)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999998

>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0

Probab=99.72  E-value=4.3e-18  Score=119.73  Aligned_cols=80  Identities=29%  Similarity=0.486  Sum_probs=67.4

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC-CCCH
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGA-RLQD  146 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~-~Lsd  146 (172)
                      .++++|++||+.+|++|||.+|.+..++.++..++|.++...+.+.|+..|++|.+.||+|.            . .|||
T Consensus        17 ~~~~~G~~ly~~~Ca~CHg~~g~~~~p~~~~~~~~l~~~~~~~~~~l~~~i~~G~~~MP~~~------------~~~Lsd   84 (99)
T 3dp5_A           17 VPNSGGGELFATHCAGCHPQGGNTVHPEKTLARARREANGIRTVRDVAAYIRNPGPGMPAFG------------EAMIPP   84 (99)
T ss_dssp             CCCCCHHHHHHHHTTTTSGGGCCSSSTTCCCCHHHHHHTTCCSHHHHHHHTTSCCTTSCCCC------------TTTSCH
T ss_pred             ccHHHHHHHHHHHHHHhCCCCCCCCCCCCccChHHHHhcCccCHHHHHHHHHcCCCCCCCCC------------CCCCCH
Confidence            45678999999999999998775544555555668877766789999999999999999996            5 7999


Q ss_pred             HHHHHHHHHHHhh
Q 030717          147 EDIKLLAQFVKSQ  159 (172)
Q Consensus       147 ~ei~~VaaYl~~~  159 (172)
                      +||++|++||++.
T Consensus        85 ~ei~~l~~Yi~~~   97 (99)
T 3dp5_A           85 ADALKIGEYVVAS   97 (99)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}

Probab=99.62  E-value=9.5e-17  Score=109.29  Aligned_cols=78  Identities=26%  Similarity=0.419  Sum_probs=59.0

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC---CCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG---VDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGA  142 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~---~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~  142 (172)
                      ..+++++|++||+.+|++|||.++.+. +.    +|++.+..   ..+.+.+...+.+|.+.||+|.            .
T Consensus         5 ~~~~~~~G~~l~~~~C~~CHg~~~~g~-~~----~~~l~~~~~~~~~~~~~~~~~i~~G~~~Mp~~~------------~   67 (87)
T 2zon_G            5 PAQLDPAGEKLYRSACVVCHASGVANA-PK----LGDKQAWAPFLAQGADALLATVLKGKGAMPPRG------------G   67 (87)
T ss_dssp             --CCCHHHHHHHHHTTHHHHTTTGGGC-CC----TTCHHHHHHHHHHCHHHHHHHHHHCBTTBCGGG------------G
T ss_pred             chhhhhHHHHHHHHHhHHHcCCCCCCC-CC----CCCHHHHHHHHhcCHHHHHHHHHcCcCCCCCCC------------C
Confidence            456788999999999999999876532 11    23333211   1257788899999999999996            5


Q ss_pred             -CCCHHHHHHHHHHHHhhh
Q 030717          143 -RLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       143 -~Lsd~ei~~VaaYl~~~~  160 (172)
                       .||++|+++|++||.++.
T Consensus        68 ~~ls~~ei~~l~~yl~~~~   86 (87)
T 2zon_G           68 TAADEATLRAAVAYMMDAA   86 (87)
T ss_dssp             CCCCHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhc
Confidence             799999999999999874

>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1

Probab=99.59  E-value=1.9e-15  Score=101.37  Aligned_cols=72  Identities=29%  Similarity=0.512  Sum_probs=55.4

Q ss_pred             hHHHHHHc----cCccccCCCCCCCCCCCCccc-hhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 030717           72 KGVSLFRQ----ACIGCHDGGGNVIQPGATLFL-KDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQD  146 (172)
Q Consensus        72 ~G~~lf~~----~C~~CHg~~g~~~~~~~~~~~-p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd  146 (172)
                      .|++||+.    +|++|||.++.+   ++.+.. ..+... ..+.+.+...+++|.+.||+|+            ..|||
T Consensus         1 ~G~~ly~~g~~~~C~~CHg~~g~g---~P~l~~~~~~~~~-~~~~~~l~~~i~~G~~~Mp~~~------------~~Lsd   64 (78)
T 1gks_A            1 DGESIYINGTAPTCSSCHDRGVAG---APELNAPEDWADR-PSSVDELVESTLAGKGAMPAYD------------GRADR   64 (78)
T ss_dssp             CHHHHHHTSSSSCSHHHHTTTGGG---CCCTTCHHHHHTS-CCCHHHHHHHHHHCBTTBCCCB------------TTBCH
T ss_pred             CHHHHHhhccccchhhhCCCCCCC---CCCCCCHHHhhhc-cCCHHHHHHHHHcCCCCCCCCC------------CCCCH
Confidence            48999986    999999988753   222211 122222 2478999999999999999997            68999


Q ss_pred             HHHHHHHHHHHhh
Q 030717          147 EDIKLLAQFVKSQ  159 (172)
Q Consensus       147 ~ei~~VaaYl~~~  159 (172)
                      +||++|++||+++
T Consensus        65 ~ei~~l~~yi~~~   77 (78)
T 1gks_A           65 EDLVKAIEYMLST   77 (78)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999875

>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*

Probab=99.59  E-value=1.3e-15  Score=102.66  Aligned_cols=73  Identities=22%  Similarity=0.318  Sum_probs=58.3

Q ss_pred             hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 030717           69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDED  148 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~e  148 (172)
                      ++++|++||+.+|++||+.++.        ..|.|.+. ..+.+.|...|++|.+.||+|.           ...||++|
T Consensus         3 ~~~~G~~l~~~~C~~CHg~~gg--------~~P~L~~~-~~~~~~l~~~i~~g~~~Mp~~~-----------~~~ls~~e   62 (80)
T 1wve_C            3 QWGSGKNLYDKVCGHCHKPEVG--------VGPVLEGR-GLPEAYIKDIVRNGFRAMPAFP-----------ASYVDDES   62 (80)
T ss_dssp             CSSSHHHHHHHTTHHHHSTTTC--------SSCCCTTS-CCCHHHHHHHHHHCBTTBCCCC-----------TTTSCHHH
T ss_pred             cHHHHHHHHHHHHHHhCCCCCC--------CCCCCCCC-CCCHHHHHHHHHhCcCCCCCCc-----------ccCCCHHH
Confidence            5678999999999999996531        13445432 2379999999999999999993           15799999


Q ss_pred             HHHHHHHHHhhhh
Q 030717          149 IKLLAQFVKSQAD  161 (172)
Q Consensus       149 i~~VaaYl~~~~~  161 (172)
                      +++|++||.++..
T Consensus        63 i~~l~~yl~~~~~   75 (80)
T 1wve_C           63 LTQVAEYLSSLPA   75 (80)
T ss_dssp             HHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHCcC
Confidence            9999999999853

>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1

Probab=99.57  E-value=3.3e-15  Score=113.49  Aligned_cols=89  Identities=20%  Similarity=0.325  Sum_probs=66.7

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC--CCCHHHHHHHHHhCC------------------CCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG--VDTEDEIYHVTYFGK------------------GRMP  126 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~--~~~~~~l~~~i~~g~------------------~~MP  126 (172)
                      .+++++|++||..+|++||+.++.+..+...+..+.+.+..  ..+.+.|...+.++.                  ..||
T Consensus        49 ~~~~~~G~~lf~~~Ca~CHg~~g~g~~p~~~l~~~~l~g~~p~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~~~Mp  128 (163)
T 1w5c_T           49 EKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFP  128 (163)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGCCSSSTTSCCCHHHHHTSSSCCSSHHHHHHHHHSCBCTTSSSBCTTTSCCSTTTTTSG
T ss_pred             HHHHHHHHHHHHHhhHHhCCCCCCCCCCCcCCCchhhccCCCCcccHHHHHHHHhCccccccchhhhhccccccccCcCC
Confidence            35678999999999999999877655444444567776531  336788888887742                  2588


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh--CC-CCCcC
Q 030717          127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD--QG-WPKIE  168 (172)
Q Consensus       127 ~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~--~g-w~~~~  168 (172)
                      +|             ..|||+|+++|++||.++..  ++ |++-+
T Consensus       129 ~~-------------~~Lsd~ei~~laaYl~sl~~~~~~~w~~g~  160 (163)
T 1w5c_T          129 KM-------------RNLTEKDLVAIAGHILVEPKILGDKWGGGK  160 (163)
T ss_dssp             GG-------------TTCCHHHHHHHHHHHHHHHHHHGGGGTTCS
T ss_pred             CC-------------CCCCHHHHHHHHHHHHHcccccCCCCCCCc
Confidence            77             46999999999999999864  44 98643

>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*

Probab=99.56  E-value=1.3e-15  Score=102.86  Aligned_cols=76  Identities=22%  Similarity=0.323  Sum_probs=54.4

Q ss_pred             HHhHHHHHHccCccccCCCCCCCCCCCCc--cchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q 030717           70 IQKGVSLFRQACIGCHDGGGNVIQPGATL--FLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDE  147 (172)
Q Consensus        70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~--~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~  147 (172)
                      +..|++||..+|++|||.++.+.......  ..|.+.    .+.+.+.+.+.+|.+.||+|+..          ..|||+
T Consensus         3 ~~~G~~ly~~~Ca~CHg~~~~g~p~~~~~~~~~~~l~----~~~~~l~~~i~~G~~~Mp~~~~~----------~~Lsd~   68 (81)
T 1kx2_A            3 LQDAEAIYNKACTVCHSMGVAGAPKSHNTADWEPRLA----KGVDNLVKSVKTGLNAMPPGGMC----------TDCTDE   68 (81)
T ss_dssp             CSCHHHHHHHSTTSSTTTTGGGCCCTTCSTTTHHHHT----TCSTTHHHHHHHTCTTSCGGGGC----------SSCCHH
T ss_pred             cccHHHHHHHHHHHHcCCCCCCCCCCCChhhhhhhhh----cCHHHHHHHHHhCcCCCCCCCCC----------CCCCHH
Confidence            35799999999999999765432110000  013342    14567888899999999999610          379999


Q ss_pred             HHHHHHHHHHhh
Q 030717          148 DIKLLAQFVKSQ  159 (172)
Q Consensus       148 ei~~VaaYl~~~  159 (172)
                      ||++|++||.++
T Consensus        69 ei~~l~~Yi~~~   80 (81)
T 1kx2_A           69 DYKAAIEFMSKA   80 (81)
T ss_dssp             HHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHc
Confidence            999999999876

>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}

Probab=99.55  E-value=7.8e-15  Score=101.44  Aligned_cols=78  Identities=26%  Similarity=0.416  Sum_probs=58.1

Q ss_pred             hhhHHhHHHHHHcc-CccccCCCCCCCCCCCCccchhhhcCC---------CCCHHHHHHHHHhCCC--------CCCCC
Q 030717           67 TVDIQKGVSLFRQA-CIGCHDGGGNVIQPGATLFLKDLQRNG---------VDTEDEIYHVTYFGKG--------RMPGF  128 (172)
Q Consensus        67 ~~d~~~G~~lf~~~-C~~CHg~~g~~~~~~~~~~~p~l~~~~---------~~~~~~l~~~i~~g~~--------~MP~~  128 (172)
                      ++++++|++||..+ |++||+.+|.+ ..++.  ++.+.+..         .++.+.|.+.|.+|..        .||+|
T Consensus         3 ~~~~~~G~~l~~~~~C~~CHg~~g~~-~~gp~--l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~g~~~~Mp~~   79 (99)
T 1w2l_A            3 MPLAELGARLYREKACFSCHSIDGSR-LVGPS--FKGLYGSTRTFEDGTTAVADENYLRESILQPGAKVVQGYPNVMPAS   79 (99)
T ss_dssp             CCHHHHHHHHHHHTSGGGTCCSSSCC-SSSCC--STTCTTCEEEBTTSCEEECCHHHHHHHHHSTTSSCBTTSCSCCCGG
T ss_pred             cccHHHHHHHHhhCChhhcCCCCCCC-CCCCC--cccccccccccCCCCcccCCHHHHHHHHHccCccccccccccCccc
Confidence            35788999999888 99999987642 11222  23332210         2369999999999863        69998


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       129 ~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                      .            ..||++|+++|++||+++
T Consensus        80 ~------------~~ls~~ei~~l~~yl~sl   98 (99)
T 1w2l_A           80 Y------------ASLSEREVAALIEFIKQQ   98 (99)
T ss_dssp             G------------GGCCHHHHHHHHHHHHTC
T ss_pred             c------------ccCCHHHHHHHHHHHHHc
Confidence            6            679999999999999986

>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}

Probab=99.54  E-value=6.4e-16  Score=108.29  Aligned_cols=74  Identities=27%  Similarity=0.363  Sum_probs=54.5

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHH---HhCC--C----CCCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT---YFGK--G----RMPGFGEKCTPRGQ  137 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i---~~g~--~----~MP~~~~~~~~~~~  137 (172)
                      .+++++|+++|+ +|++||+.+|.+..+    ..|+|.+.   +.+.+...+   .+|.  +    .||+|.        
T Consensus        21 ~~~~~~G~~l~~-~C~~CHg~~g~g~~~----~~p~L~g~---~~~~~~~~l~~~~~g~~~~~~~~~Mp~~~--------   84 (103)
T 2zzs_A           21 AGDAAAGQAKAA-VCAACHGADGNATIP----GYPNLKGQ---NEQYIVSSIKAYKNKERSGGLAAVMQAQA--------   84 (103)
T ss_dssp             -CCHHHHHHHTT-TTHHHHCTTSCCCST----TCCCCTTC---CHHHHHHHHHHHHTTCBCSTTHHHHHHHH--------
T ss_pred             cCCHHHHHHHHH-HHHhhcCCCCCCCCC----CCCCCCCC---CHHHHHHHHHHHHcCCCCCCcccchHHHH--------
Confidence            578899999998 999999988764332    25666554   455555554   3442  2    699986        


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhh
Q 030717          138 CTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       138 ~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                          ..|||+|+++|++||.+++
T Consensus        85 ----~~ls~~ei~~l~~yl~~l~  103 (103)
T 2zzs_A           85 ----SLLSDDDIANLAAYYSSLK  103 (103)
T ss_dssp             ----TTCCHHHHHHHHHHHHHC-
T ss_pred             ----hhCCHHHHHHHHHHHHhCC
Confidence                6899999999999999863

>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*

Probab=99.54  E-value=5.6e-15  Score=97.07  Aligned_cols=68  Identities=24%  Similarity=0.511  Sum_probs=54.8

Q ss_pred             hHHHHHHccCccccCCCCCCCCCCCCccchhhhcC-CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 030717           72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN-GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIK  150 (172)
Q Consensus        72 ~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~-~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~  150 (172)
                      +|++||..+|++||+.++.+.. +     |+|.+. ...+.+.|...+.+|.+.||+ .             .||++|++
T Consensus         2 ~G~~l~~~~C~~CHg~~g~g~~-g-----P~L~~~~~~~~~~~l~~~i~~g~~~Mp~-~-------------~ls~~ei~   61 (71)
T 1c75_A            2 DAEAVVQQKCISCHGGDLTGAS-A-----PAIDKAGANYSEEEILDIILNGQGGMPG-G-------------IAKGAEAE   61 (71)
T ss_dssp             CHHHHHHHHTHHHHCTTSSCSS-S-----CCCTTGGGTSCHHHHHHHHHHCBTTBCS-C-------------SSCHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCCCCCC-C-----CCCccccccCCHHHHHHHHHhCCCCCCC-C-------------CCCHHHHH
Confidence            5999999999999998776422 2     444332 234799999999999999999 4             59999999


Q ss_pred             HHHHHHHhh
Q 030717          151 LLAQFVKSQ  159 (172)
Q Consensus       151 ~VaaYl~~~  159 (172)
                      +|++||.++
T Consensus        62 ~l~~yl~~~   70 (71)
T 1c75_A           62 AVAAWLAEK   70 (71)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhc
Confidence            999999986

>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*

Probab=99.54  E-value=3.4e-14  Score=106.17  Aligned_cols=77  Identities=18%  Similarity=0.283  Sum_probs=60.5

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC-----CCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG-----VDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCT  139 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~-----~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~  139 (172)
                      ...++++|++||..+|++|||.+|.+.. +     |+|.+..     ..+.+.|...|.+|+ +.||+|.          
T Consensus        42 ~~~~~~~G~~l~~~~Ca~CHg~~g~g~~-g-----P~L~~~~~~~~~~~~~~~l~~~i~~G~~~~Mp~~~----------  105 (147)
T 2gc4_D           42 DPEILPEAEELYAGMCSGCHGHYAEGKI-G-----PGLNDAYWTYPGNETDVGLFSTLYGGATGQMGPMW----------  105 (147)
T ss_dssp             CTTTHHHHHHHHHHHTHHHHCTTSSCSS-S-----CCCSSSCCSSGGGGSHHHHHHHHHHCCSTTCCCCT----------
T ss_pred             CHHHHHHHHHHHHhhcHHhCCCCCCCCC-C-----CCCCcccccccCcCCHHHHHHHHHcCCCCCCCCCC----------
Confidence            4467899999999999999998776432 2     3333211     236888999999995 5899997          


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh
Q 030717          140 FGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       140 ~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                        ..||++||++|++||+++.
T Consensus       106 --~~ls~~ei~~l~~Yl~~l~  124 (147)
T 2gc4_D          106 --GSLTLDEMLRTMAWVRHLY  124 (147)
T ss_dssp             --TTSCHHHHHHHHHHHHHTC
T ss_pred             --CCCCHHHHHHHHHHHHHhc
Confidence              6899999999999999984

>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*

Probab=99.53  E-value=6.1e-15  Score=108.70  Aligned_cols=89  Identities=20%  Similarity=0.320  Sum_probs=63.2

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC--CCCHHHHHHHHHhC------------------CCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG--VDTEDEIYHVTYFG------------------KGRM  125 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~--~~~~~~l~~~i~~g------------------~~~M  125 (172)
                      ..+++++|++||..+|++||+.++.+..+...+..+.|.+..  .++.+.|...+.++                  ...|
T Consensus        22 ~~~~~~~G~~ly~~~Ca~CHg~~g~g~~~~~~l~~~~l~~~~p~~~~~~~l~~~l~~p~~~~~~~~~~~~~~~~~~~~~M  101 (137)
T 1mz4_A           22 TEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIF  101 (137)
T ss_dssp             CHHHHHHHHHHHHHHTHHHHGGGCCTTCGGGCCCHHHHHTSSSCCSSHHHHHHHHHSCBCTTSSSBCTTTSCCGGGTTTS
T ss_pred             ChHHHHHHHHHHHhhhHHhcCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhCchhhcccchhhhcccccccCCCC
Confidence            346788999999999999999877654332223345665432  23478888888762                  3469


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh---CCCCCc
Q 030717          126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD---QGWPKI  167 (172)
Q Consensus       126 P~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~---~gw~~~  167 (172)
                      |+|.             .|||+||++|++||.++..   .+|+.-
T Consensus       102 P~~~-------------~Lsd~ei~alaaYl~~~~~~~~~~w~~~  133 (137)
T 1mz4_A          102 PKMR-------------NLTEKDLVAIAGHILVEPKILGDKWGGG  133 (137)
T ss_dssp             GGGT-------------TCCHHHHHHHHHHHHHHHHHHGGGCC--
T ss_pred             CCCC-------------CCCHHHHHHHHHHHHHccccCCcccccC
Confidence            9984             5999999999999999863   348753

>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1

Probab=99.52  E-value=3.5e-14  Score=100.96  Aligned_cols=80  Identities=16%  Similarity=0.210  Sum_probs=57.1

Q ss_pred             CchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC---------------------CCCCHHHHHHHHHhCC-
Q 030717           65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN---------------------GVDTEDEIYHVTYFGK-  122 (172)
Q Consensus        65 a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~---------------------~~~~~~~l~~~i~~g~-  122 (172)
                      ...+++++|++||+.+|++||+.++.+...    ..|+|.+.                     ..++.+.|.+.+.+++ 
T Consensus         7 ~~~~~~~~G~~lf~~~C~~CHg~~g~g~~~----~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~   82 (112)
T 1ccr_A            7 APPGNPKAGEKIFKTKCAQCHTVDKGAGHK----QGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPXK   82 (112)
T ss_dssp             SCCCCHHHHHHHHHHHTTTTCCCSTTCCCS----SSCCCTTCTTCBTTCCTTCCCCHHHHHHCCBCSHHHHHHHHHCHHH
T ss_pred             cccccHHHHHHHHHhhcHHhCCCCCCCCCC----CCCCccccccccccccCCccccHHHHhcCCccCHHHHHHHHhCccc
Confidence            345788999999998999999987653211    12222221                     1247888999988763 


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          123 ---GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       123 ---~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                         +.|++|.            ..||++|+++|++||+++.
T Consensus        83 ~~~g~~m~~~------------~~ls~~ei~~l~aYl~~l~  111 (112)
T 1ccr_A           83 YIPGTKMVFP------------GLXKPQERADLISYLKEAT  111 (112)
T ss_dssp             HSTTCCCCCC------------CCCCHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCCC------------CCCCHHHHHHHHHHHHHcC
Confidence               3566675            5679999999999999874

>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1

Probab=99.52  E-value=1.1e-15  Score=104.20  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=52.6

Q ss_pred             HHhHHHHHHccCccccCCCCCCCCCCCCccc-----hhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC--
Q 030717           70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFL-----KDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGA--  142 (172)
Q Consensus        70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~-----p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~--  142 (172)
                      +..|++||+.+|++||+.++.+.   +.+..     +.+...  .+.+.+...+.+|.+.||+|+            .  
T Consensus         4 ~~~G~~ly~~~Ca~CHg~~~~G~---p~~~~~~~~~~~l~~~--~~~~~l~~~i~~G~~~MP~~~------------~~~   66 (83)
T 1cc5_A            4 ARSGDDVVAKYCNACHGTGLLNA---PKVGDSAAWKTRADAK--GGLDGLLAQSLSGLNAMPPKG------------TCA   66 (83)
T ss_dssp             SSCSHHHHHHTTHHHHTTTTTTC---CCTTCHHHHHHHHHHH--TSSTTTHHHHHHCBTTBCSSS------------SCS
T ss_pred             hHHHHHHHHHHHHHHCcCCCCCC---CCCCCHHHHHHHhhcc--cCHHHHHHHHHcCccCCCCCC------------CCC
Confidence            35699999999999999875431   11100     112110  024467888999999999997            4  


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 030717          143 RLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       143 ~Lsd~ei~~VaaYl~~~  159 (172)
                      .|||+||++|++||+++
T Consensus        67 ~Lsd~ei~~v~~yi~~~   83 (83)
T 1cc5_A           67 DCSDDELKAAIGKMSGL   83 (83)
T ss_dssp             SCCHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHhC
Confidence            69999999999999875

>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1

Probab=99.52  E-value=2e-15  Score=102.88  Aligned_cols=75  Identities=27%  Similarity=0.384  Sum_probs=54.7

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHH---HHHhCCC------CCCCCCCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYH---VTYFGKG------RMPGFGEKCTPRGQC  138 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~---~i~~g~~------~MP~~~~~~~~~~~~  138 (172)
                      +++++|+.||. +|++||+.+|.+..+    ..|.|.+.   +...+..   .+.+|..      .||+|.         
T Consensus         2 ~~~~~G~~ly~-~C~~CHg~~g~g~~~----~~P~L~~~---~~~~~~~~l~~~~~g~~~~~~~~~Mp~~~---------   64 (87)
T 1cno_A            2 GDIEAGKAKAA-VCAACHGQNGISQVP----IYPNLAGQ---KEQYLVAALKAYKAGQRQGGQAPVMQGQA---------   64 (87)
T ss_dssp             CCHHHHHHHGG-GTHHHHCTTSCCSST----TSCCCTTC---CHHHHHHHHHHHHTTCBCSTTHHHHHHHH---------
T ss_pred             ccHHHHHHHHH-HHHhhcCCCCCCCCC----CCCCCCCC---CHHHHHHHHHHHHcCCcCCCcccccHHHH---------
Confidence            46889999998 999999988765432    25666543   3443333   3456632      699996         


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhhC
Q 030717          139 TFGARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       139 ~~~~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                         ..||++||++|++||+++..+
T Consensus        65 ---~~ls~~ei~~l~~yl~~l~~~   85 (87)
T 1cno_A           65 ---TALSDADIANLAAYYASNPAA   85 (87)
T ss_dssp             ---TTCCHHHHHHHHHHHHHSCTT
T ss_pred             ---hhCCHHHHHHHHHHHHhCCcc
Confidence               689999999999999998643

>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1

Probab=99.51  E-value=1.7e-14  Score=104.60  Aligned_cols=87  Identities=21%  Similarity=0.357  Sum_probs=62.6

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCC------------------CCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGK------------------GRM  125 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~------------------~~M  125 (172)
                      ..+++++|++||+.+|++||+.++.+..+......+.+.+.  ..++.+.|...+.++.                  ..|
T Consensus        20 ~~~~~~~G~~lf~~~Ca~CHg~~g~~~gP~l~~~~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~M   99 (129)
T 1f1c_A           20 SLKEIKKGQQVFNAACAQCHALGVTRTNPDVNLSPEALALATPPRDNIAALVDYIKNPTTYDGFVEISELHPSLKSSDIF   99 (129)
T ss_dssp             CHHHHHHHHHHHHHHTHHHHGGGCCTTCSSSCSSHHHHHTSSSCCCSHHHHHHHHHSCBCTTSCSBCTTTSCSTTCTTTC
T ss_pred             CcccHHHHHHHHHhhhHHhcCCCCCCCCCCcccCHHHHHhcCCccchHHHHHHHHhCCcccccchhHhhhhhcccCCCCC
Confidence            45678999999999999999976553322211123444433  2457888999998753                  268


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCCC
Q 030717          126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGWP  165 (172)
Q Consensus       126 P~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw~  165 (172)
                      |+|             ..||++||++|++||.++.   .++|.
T Consensus       100 p~~-------------~~Ls~~ei~~l~~Yl~~l~~~~~~~w~  129 (129)
T 1f1c_A          100 PKM-------------RNISEDDLYNVAGYILLQPKVRGEQWG  129 (129)
T ss_dssp             GGG-------------SSCCHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCC-------------CCCCHHHHHHHHHHHHHcCccccccCC
Confidence            888             3699999999999999986   35673

>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*

Probab=99.50  E-value=1.2e-14  Score=97.42  Aligned_cols=69  Identities=23%  Similarity=0.498  Sum_probs=51.4

Q ss_pred             hHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHH---hCC------CCCCCCCCCCCCCCCCCCCC
Q 030717           72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTY---FGK------GRMPGFGEKCTPRGQCTFGA  142 (172)
Q Consensus        72 ~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~---~g~------~~MP~~~~~~~~~~~~~~~~  142 (172)
                      +|++||.. |++|||.+|.+...   ...|.|.+.   +.+.+...+.   +|.      ..||+|.            .
T Consensus         2 ~G~~ly~~-Ca~CHg~~g~g~~~---~~~P~L~g~---~~~~~~~~l~~~~~g~~~~~~~~~Mp~~~------------~   62 (79)
T 1c53_A            2 DGAALYKS-CVGCHGADGSKQAM---GVGHAVKGQ---KADELFKKLKGYADGSYGGEKKAVMTNLV------------K   62 (79)
T ss_pred             cHHHHHHH-HHhccCCCCCCCCC---CCCCcCCCC---CHHHHHHHHHHHHcCCCCCCcccchHHHH------------h
Confidence            69999987 99999988775331   125677654   5666666554   553      2799996            6


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 030717          143 RLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       143 ~Lsd~ei~~VaaYl~~~  159 (172)
                      .|||+||++|++||+++
T Consensus        63 ~Ls~~ei~~l~~Yl~sl   79 (79)
T 1c53_A           63 RYSDEEMKAMADYMSKL   79 (79)
T ss_pred             hCCHHHHHHHHHHHHhC
Confidence            89999999999999875

>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}

Probab=99.50  E-value=1.6e-13  Score=101.83  Aligned_cols=84  Identities=21%  Similarity=0.354  Sum_probs=59.7

Q ss_pred             CchhhHHhHHHHHH-ccCccccCCCCCCCCCCCCccchhhhcCC-CCCH-----HHHHHHHHhCC------CCCCCCCCC
Q 030717           65 AQTVDIQKGVSLFR-QACIGCHDGGGNVIQPGATLFLKDLQRNG-VDTE-----DEIYHVTYFGK------GRMPGFGEK  131 (172)
Q Consensus        65 a~~~d~~~G~~lf~-~~C~~CHg~~g~~~~~~~~~~~p~l~~~~-~~~~-----~~l~~~i~~g~------~~MP~~~~~  131 (172)
                      ...+++++|++||+ .+|++||+.+|.+...+     |+|.+.. ....     +.+...+.++.      ..||.|   
T Consensus        44 ~~~~~~~~G~~l~~~~~C~~CH~~~g~g~~~g-----P~L~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~~Mp~~---  115 (146)
T 3o0r_C           44 AMSAAVVRGKLVWEQNNCVGCHTLLGEGAYFA-----PELGNVVGRRGGEEGFNTFLQAWMKIQPLNVPGRRAMPQF---  115 (146)
T ss_dssp             GCCHHHHHHHHHHHHHTGGGTSEETTEECSSS-----CBCSSGGGGTTHHHHHHHHHHHHHHHCCCCCTTSCCCCCC---
T ss_pred             CCchHHHHHHHHHHhCCCcccCCCcCCCCCCC-----CCchhhhhhcccccchHHHHHHHHhCcccCCCCCCCCCCC---
Confidence            34567899999998 67999999876643222     3333221 1233     67888888743      369998   


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCCCCc
Q 030717          132 CTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGWPKI  167 (172)
Q Consensus       132 ~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw~~~  167 (172)
                                . |||+|+++|++||+++.   .++||.-
T Consensus       116 ----------~-Ls~~ei~~l~ayl~~l~~~~~~~wP~~  143 (146)
T 3o0r_C          116 ----------H-LSEGQVDDLAEFLKWSSKIDTNQWPPN  143 (146)
T ss_dssp             ----------C-CCHHHHHHHHHHHHHHTTSCCSSCSSS
T ss_pred             ----------C-cCHHHHHHHHHHHHHhccCccCCCCCC
Confidence                      3 99999999999999775   6689853

>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}

Probab=99.48  E-value=6.1e-14  Score=103.42  Aligned_cols=93  Identities=18%  Similarity=0.231  Sum_probs=63.4

Q ss_pred             cCchhhHHhHHHHHH----ccCccccCCCCCCCCCCCCccchhhhcCC-CCCHHHHHHHHHhCC-----CCCCCCCCC--
Q 030717           64 LAQTVDIQKGVSLFR----QACIGCHDGGGNVIQPGATLFLKDLQRNG-VDTEDEIYHVTYFGK-----GRMPGFGEK--  131 (172)
Q Consensus        64 ~a~~~d~~~G~~lf~----~~C~~CHg~~g~~~~~~~~~~~p~l~~~~-~~~~~~l~~~i~~g~-----~~MP~~~~~--  131 (172)
                      .+..+++.+|++||.    .+|++||+.++.+.........|+|.+.+ .++.+.|...|.+|.     ..||.|...  
T Consensus        20 ~~~~~~~~~G~~lf~~~~~~~C~~CH~~~g~g~~~~~g~~gP~L~~~~~~~~~~~l~~~i~~p~~~~~~~~Mp~~~~~~~   99 (137)
T 2c1d_B           20 TGAPGNPEEGVRIMTTNALGNCVACHQIGALPDVEFPGTIAPPLDGAGDRWTEAQLRGIVANAKMTFEGTFMPAFYKVDG   99 (137)
T ss_dssp             SSSCCCHHHHHHHHTCTTTTCGGGTBCCTTCTTCCSCCCSBCCSTTHHHHSCHHHHHHHHHHGGGTSTTCSSCCSSCCSC
T ss_pred             cCCCCCHHHHHHHHhcccccChhhhcCCCCCCCccccccCCCCHhHhhhccCHHHHHHHHcCccccCCCcccCccccccc
Confidence            344568999999998    89999999876532211112245665421 247888999998885     369988510  


Q ss_pred             ------------CCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          132 ------------CTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       132 ------------~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                                  -||.    +...||++||++|++||.++.
T Consensus       100 ~~~~g~~~~~~~~Mp~----~~~~Ls~~ei~~l~aYl~sl~  136 (137)
T 2c1d_B          100 FVRPGDGFSGKAGAEP----LAPILNAQQIEDVVAFLVTLK  136 (137)
T ss_dssp             CSSBBSTTSSSBCCSS----CCCSSCHHHHHHHHHHHHTCC
T ss_pred             cccccccccccccChh----hhcCCCHHHHHHHHHHHHHcc
Confidence                        1111    123799999999999999874

>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1

Probab=99.47  E-value=1e-13  Score=97.64  Aligned_cols=79  Identities=18%  Similarity=0.298  Sum_probs=54.9

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC------------------CCCCHHHHHHHHHhCC-----
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN------------------GVDTEDEIYHVTYFGK-----  122 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~------------------~~~~~~~l~~~i~~g~-----  122 (172)
                      ..+++++|++||..+|++||+.++.+...++.+.  .+.+.                  ..++.+.|...|.++.     
T Consensus         4 ~~~~~~~G~~lf~~~C~~CH~~~g~~~~~gP~L~--~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g   81 (106)
T 1hro_A            4 PPGDPVEGKHLFHTICITCHTDIKGANKVGPSLY--GVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPG   81 (106)
T ss_dssp             CCCCHHHHHHHHTTTGGGTCCSSTTCBSSSCCCT--TCTTCBTTCSTTBCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTT
T ss_pred             ccccHHHHHHHHHcchhhhCCCCCCCCCCCCCCC--CccccccccCCCccccHHHHhcCcccCHHHHHHHHhCccccCCC
Confidence            4568899999999999999998754222222211  11100                  1257888999887753     


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          123 GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       123 ~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                      ..|| |.            ..+|++|+++|++||+++
T Consensus        82 ~~Mp-~~------------~~~~~~ei~~l~aYl~sl  105 (106)
T 1hro_A           82 TKMG-YP------------GQPDPQKRADIIAYLETL  105 (106)
T ss_dssp             CCCC-CC------------CCCCHHHHHHHHHHHTTC
T ss_pred             CCCC-CC------------CCCCHHHHHHHHHHHHhc
Confidence            3688 64            556899999999999876

>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...

Probab=99.47  E-value=8.8e-14  Score=98.16  Aligned_cols=76  Identities=21%  Similarity=0.343  Sum_probs=54.8

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCC-CCCCCccchhhhcC---------------------CCCCHHHHHHHHHhCC--
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVI-QPGATLFLKDLQRN---------------------GVDTEDEIYHVTYFGK--  122 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~-~~~~~~~~p~l~~~---------------------~~~~~~~l~~~i~~g~--  122 (172)
                      .+++++|++||+.+|++||+.++.+. ..+     |+|.+.                     ..++.+.|...+.++.  
T Consensus         5 ~~~~~~G~~lf~~~C~~CH~~~g~g~~~~g-----P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~   79 (108)
T 1ycc_A            5 AGSAKKGATLFKTRCLQCHTVEKGGPHKVG-----PNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPXKY   79 (108)
T ss_dssp             CCCHHHHHHHHHHHTTTTCCCSTTCCCCSS-----CCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHH
T ss_pred             cccHHHHHHHHHhhCcccCCCCCCCCCCCC-----CChhhhccccccccccccccHHHHhcCcccCHHHHHHHHHChhhh
Confidence            46789999999888999999876531 112     222211                     1257888999888763  


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          123 ---GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       123 ---~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                         ..|| |.            ..+|++|+++|++||.++.
T Consensus        80 ~~~~~Mp-~~------------~l~s~~ei~~l~aYl~sl~  107 (108)
T 1ycc_A           80 IPGTKMA-FG------------GLKKEKDRNDLITYLKKAC  107 (108)
T ss_dssp             STTCCCC-CC------------CCCCHHHHHHHHHHHHHHC
T ss_pred             cCCcccC-CC------------CCCCHHHHHHHHHHHHHhc
Confidence               3788 74            4458999999999999874

>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1

Probab=99.45  E-value=1.3e-13  Score=106.03  Aligned_cols=77  Identities=19%  Similarity=0.345  Sum_probs=61.2

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc----CC-CCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR----NG-VDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCT  139 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~----~~-~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~  139 (172)
                      ...++++|++||..+|++|||.+|.+.. +     |+|.+    ++ ..+.+.|...|.+|+ +.||+|.          
T Consensus        50 ~~~~~~~G~~lf~~~Ca~CHg~~g~G~~-g-----P~L~~~~~~~~~~~~~~~l~~~i~~G~~g~MP~~~----------  113 (172)
T 2c8s_A           50 DKSCLRNGESLFATSCSGCHGHLAEGKL-G-----PGLNDNYWTYPSNTTDVGLFATIFGGANGMMGPHN----------  113 (172)
T ss_dssp             CHHHHHHHHHHHHHHTHHHHCTTSSCSS-S-----CCSSSSCCSSGGGGSHHHHHHHHHTCTTSSSCSCC----------
T ss_pred             CHHHHHHHHHHHHhhhHHhCCCCCCCCC-C-----CCCccccccccccCCHHHHHHHHHhCCCCCCCCCC----------
Confidence            4567899999999999999998876432 2     33432    21 236888999999996 5899997          


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh
Q 030717          140 FGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       140 ~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                        ..||++||++|++||+++.
T Consensus       114 --~~Lsd~ei~~laaYl~sl~  132 (172)
T 2c8s_A          114 --ENLTPDEMLQTIAWIRHLY  132 (172)
T ss_dssp             --CCSCHHHHHHHHHHHHHTC
T ss_pred             --CCCCHHHHHHHHHHHHHhc
Confidence              6899999999999999885

>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*

Probab=99.45  E-value=9.4e-14  Score=93.02  Aligned_cols=70  Identities=26%  Similarity=0.438  Sum_probs=53.0

Q ss_pred             hHHHHHH-ccCccccCCCCCCCCCCCCccchhhhcC-C--CCCHHHHHHHHHhCCC------CCCCCCCCCCCCCCCCCC
Q 030717           72 KGVSLFR-QACIGCHDGGGNVIQPGATLFLKDLQRN-G--VDTEDEIYHVTYFGKG------RMPGFGEKCTPRGQCTFG  141 (172)
Q Consensus        72 ~G~~lf~-~~C~~CHg~~g~~~~~~~~~~~p~l~~~-~--~~~~~~l~~~i~~g~~------~MP~~~~~~~~~~~~~~~  141 (172)
                      +|++||. .+|++||+.++.+.  ++  .++.+.+. .  ..+.+.|.+.|++|..      .||+|             
T Consensus         2 ~G~~l~~~~~C~~CHg~~g~g~--gp--~l~~~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-------------   64 (82)
T 2exv_A            2 DPEVLAKNKGCVACHAIDTKMV--GP--AYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPN-------------   64 (82)
T ss_dssp             CHHHHHHHTTGGGTCCSSSCCS--SC--CHHHHHHHHTTCTTHHHHHHHHHHHCBSSSSSSSCBCCC-------------
T ss_pred             cHHHHHHhCCchhhcCCCCCCC--Cc--CHHHHHHHhcCCcchHHHHHHHHHcCCCCCCCCCCCCCC-------------
Confidence            5999997 78999999887642  22  24555421 1  1237889999999964      49987             


Q ss_pred             CCCCHHHHHHHHHHHHhh
Q 030717          142 ARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~  159 (172)
                       .||++||++|++||.++
T Consensus        65 -~ls~~ei~~l~~yl~~l   81 (82)
T 2exv_A           65 -AVSDDEAQTLAKWVLSQ   81 (82)
T ss_dssp             -CCCHHHHHHHHHHHHTC
T ss_pred             -CCCHHHHHHHHHHHHhC
Confidence             39999999999999986

>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}

Probab=99.45  E-value=1.9e-13  Score=104.79  Aligned_cols=77  Identities=21%  Similarity=0.409  Sum_probs=60.9

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC-----CCCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN-----GVDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCT  139 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~-----~~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~  139 (172)
                      ...++.+|++||..+|++|||.+|.+.. +     |+|.+.     ...+.+.|...|.+|. +.||+|.          
T Consensus        44 ~~~~~~~G~~lf~~~Ca~CHg~~g~G~~-g-----P~L~~~~~~~~~~~~~~~l~~~i~~G~~~~Mp~~~----------  107 (170)
T 2d0w_A           44 VAGCLPKGEEIYLESCSGCHGHIGEGKV-G-----PGLNDSYWTYPKNTTDKGLFETIFGGANGMMGPHG----------  107 (170)
T ss_dssp             CGGGHHHHHHHHHHHTHHHHCTTSCCSS-S-----CCSSSSCCSSGGGGSHHHHHHHHHHCCSTTCCCCT----------
T ss_pred             CHHHHHHHHHHHHhhhHHhCCCCCCCCC-C-----CCCccchhhccccCCHHHHHHHHHcCCCCCCCCCC----------
Confidence            4567889999999999999998876432 2     333321     1236888999999997 5899997          


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh
Q 030717          140 FGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       140 ~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                        ..||++||++|++||+++.
T Consensus       108 --~~Ls~~ei~~l~aYl~sl~  126 (170)
T 2d0w_A          108 --QDLELDNMLKLIAWIRHIQ  126 (170)
T ss_dssp             --TTSCHHHHHHHHHHHHHTC
T ss_pred             --CCCCHHHHHHHHHHHHHcc
Confidence              6899999999999999985

>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}

Probab=99.44  E-value=4.1e-14  Score=95.31  Aligned_cols=72  Identities=25%  Similarity=0.390  Sum_probs=52.4

Q ss_pred             hHHHHHHc-cCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC---------CCCCCC---CCCCCCCCCC
Q 030717           72 KGVSLFRQ-ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK---------GRMPGF---GEKCTPRGQC  138 (172)
Q Consensus        72 ~G~~lf~~-~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~---------~~MP~~---~~~~~~~~~~  138 (172)
                      +|++||.. +|++||+.++.+..  +  .++.+......+.+.+..++...+         ..||+|   .         
T Consensus         2 ~G~~l~~~~~C~~CHg~~g~g~g--p--~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Mp~~~~~~---------   68 (87)
T 2zxy_A            2 DGKAIFQQKGCGSCHQANVDTVG--P--SLKKIAQAYAGKEDQLIKFLKGEAPAIVDPAKEAIMKPQLTML---------   68 (87)
T ss_dssp             CHHHHHHHTTGGGTCCSSSCSSS--C--CHHHHHHHTTTCHHHHHHHHTTCSCCSSCGGGHHHHGGGGGGG---------
T ss_pred             ChHHHHhcCCchhhcCCCCCCCC--C--ChHHHHHHhcCCHHHHHHHHhcccccccCCCCCCCCCCccccc---------
Confidence            69999987 89999998876432  2  256665432225667776665432         259998   4         


Q ss_pred             CCCCCCCHHHHHHHHHHHHhh
Q 030717          139 TFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       139 ~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                         ..||++||++|++||.++
T Consensus        69 ---~~ls~~ei~~l~~yl~sl   86 (87)
T 2zxy_A           69 ---KGLSDAELKALADFILSH   86 (87)
T ss_dssp             ---GGCCHHHHHHHHHHHHTC
T ss_pred             ---cCCCHHHHHHHHHHHHhc
Confidence               679999999999999986

>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*

Probab=99.44  E-value=9.9e-14  Score=102.28  Aligned_cols=96  Identities=15%  Similarity=0.116  Sum_probs=60.9

Q ss_pred             CchhhHHhHHHHHHc----cCccccCCCCCCCCCCCCccchhhhcCC-CCCHHHHHHHHHhCC-----CCCCCCCCCCCC
Q 030717           65 AQTVDIQKGVSLFRQ----ACIGCHDGGGNVIQPGATLFLKDLQRNG-VDTEDEIYHVTYFGK-----GRMPGFGEKCTP  134 (172)
Q Consensus        65 a~~~d~~~G~~lf~~----~C~~CHg~~g~~~~~~~~~~~p~l~~~~-~~~~~~l~~~i~~g~-----~~MP~~~~~~~~  134 (172)
                      ...+++.+|++||..    +|++||+.++....+......|+|.+.+ .++.+.|...|.+++     ..||.|...-..
T Consensus        22 ~~~~~~~~G~~lf~~~~~~~C~~CH~~~g~~~~~~~~~~gP~L~~~~~~~~~~~l~~~i~~~~~~~~~~~Mp~~~~~~~~  101 (138)
T 1h32_B           22 DAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAARYPEAMIRGILVNSKNVFPETVMPAYYRVEGF  101 (138)
T ss_dssp             SSCCCHHHHHHHHHCTTTTCGGGTCCCTTC---CCCCSSSCCCTTHHHHSCHHHHHHHHHCHHHHSTTCSSCCTTCCSCC
T ss_pred             hcCCCHHHHHHHHhhccCCChhhccCCCCcCccccCCcCCCChhHhcccCCHHHHHHHHhCcccCCCCCccCcccccccc
Confidence            345789999999986    8999999776311111112246665432 347889999998874     479987410000


Q ss_pred             -------CC---CCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          135 -------RG---QCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       135 -------~~---~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                             +|   +-.....||++|+++|++||.++.
T Consensus       102 ~~~~~~~~g~~~M~~~~~~Ls~~ei~~l~aYl~sl~  137 (138)
T 1h32_B          102 NRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLT  137 (138)
T ss_dssp             SSBBSTTSCCBCCSCCCCSSCHHHHHHHHHHHTTCC
T ss_pred             ccccccccCcccCcccccCCCHHHHHHHHHHHHhcC
Confidence                   00   000123799999999999999864

>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}

Probab=99.43  E-value=1.3e-13  Score=92.03  Aligned_cols=70  Identities=19%  Similarity=0.408  Sum_probs=50.6

Q ss_pred             HHHHHH-ccCccccCCCCCCCCCCCCccchhhhc-CCCCCHHHHHHHHHhCCC------CCCCCCCCCCCCCCCCCCCCC
Q 030717           73 GVSLFR-QACIGCHDGGGNVIQPGATLFLKDLQR-NGVDTEDEIYHVTYFGKG------RMPGFGEKCTPRGQCTFGARL  144 (172)
Q Consensus        73 G~~lf~-~~C~~CHg~~g~~~~~~~~~~~p~l~~-~~~~~~~~l~~~i~~g~~------~MP~~~~~~~~~~~~~~~~~L  144 (172)
                      |++||. .+|++||+.++.+.  ++.  +..+.. +...+.+.|.+.|++|..      .||+|             ..|
T Consensus         1 ~~~l~~~~~C~~CHg~~g~~~--gP~--l~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-------------~~L   63 (79)
T 2d0s_A            1 DEALAKAKGCMACHAIDKKLV--GPS--YKDVAKKYTEADVPKLVEKVKKGGAGVWGPVPMPPH-------------PQV   63 (79)
T ss_dssp             CHHHHHHTTGGGTCCSSSCSS--SCC--HHHHHHHCCGGGHHHHHHHHHHCBCSSSCSSCBCCC-------------TTS
T ss_pred             CHhHHhcCCChhhcCCCCCCC--CCC--HHHHHHHHccccHHHHHHHHhcCCCCCCCCCCCCCC-------------CCC
Confidence            578885 78999999887642  222  333332 211146789999999854      39988             479


Q ss_pred             CHHHHHHHHHHHHhh
Q 030717          145 QDEDIKLLAQFVKSQ  159 (172)
Q Consensus       145 sd~ei~~VaaYl~~~  159 (172)
                      |++||++|++||.++
T Consensus        64 s~~ei~~l~~yl~~l   78 (79)
T 2d0s_A           64 AEADIEKIVRWVLTL   78 (79)
T ss_dssp             CHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999999999876

>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...

Probab=99.43  E-value=2.4e-13  Score=94.85  Aligned_cols=79  Identities=23%  Similarity=0.283  Sum_probs=52.3

Q ss_pred             hHHhHHHHHHccCccccCCCCCCC-CCCCCccc--hh-------------hhcC-CCCCHHHHHHHHHhCC-----CCCC
Q 030717           69 DIQKGVSLFRQACIGCHDGGGNVI-QPGATLFL--KD-------------LQRN-GVDTEDEIYHVTYFGK-----GRMP  126 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~~~-~~~~~~~~--p~-------------l~~~-~~~~~~~l~~~i~~g~-----~~MP  126 (172)
                      |+++|++||..+|++||+.++.+. ..++.+..  ..             +... ..++.+.|...+.++.     ..||
T Consensus         2 d~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~Mp   81 (103)
T 1i54_A            2 DVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKMI   81 (103)
T ss_dssp             CHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCCTTCCCCHHHHHSCCBCSHHHHHHHHHCHHHHSTTCSCC
T ss_pred             cHHHHHHHHHHhhHHhCCCCCCCCCCCCCCcccccCccccccCCccccHHHHhCCceECHHHHHHHHhCccccCCCCcCC
Confidence            678999999989999999876532 11222110  00             0000 1246888999888764     3688


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       127 ~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                       |.            ..+|++|+++|++||.++.
T Consensus        82 -~~------------~l~~~~ei~~l~aYl~sl~  102 (103)
T 1i54_A           82 -FA------------GIKKKGERQDLVAYLKSAT  102 (103)
T ss_dssp             -CC------------CCCCHHHHHHHHHHHHHHC
T ss_pred             -cc------------CCCCHHHHHHHHHHHHHhc
Confidence             63            3335999999999999874

>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*

Probab=99.43  E-value=2.2e-13  Score=96.15  Aligned_cols=78  Identities=23%  Similarity=0.334  Sum_probs=53.5

Q ss_pred             hHHhHHHHHHccCccccCCCCCCC-CCCCCccchhhhcC------------------CCCCHHHHHHHHHhCC-----CC
Q 030717           69 DIQKGVSLFRQACIGCHDGGGNVI-QPGATLFLKDLQRN------------------GVDTEDEIYHVTYFGK-----GR  124 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~~~-~~~~~~~~p~l~~~------------------~~~~~~~l~~~i~~g~-----~~  124 (172)
                      |+++|++||.. |++||+.++.+. ..++.+  ..+.+.                  ..++.+.|...+.+++     ..
T Consensus         2 d~~~G~~lf~~-C~~CH~~~g~g~~~~gP~L--~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~   78 (107)
T 1co6_A            2 DAASGEQVFKQ-CLVCHSIGPGAKNKVGPVL--NGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTK   78 (107)
T ss_dssp             CHHHHHHHHHH-HHTTCCCSTTCCCCSSCCC--TTCTTCBTTCSTTCCCCHHHHTSCCBCCHHHHHHHHHCHHHHSTTCS
T ss_pred             CHHHHHHHHHH-hHhhCCCCCCCCCCCCCCc--ccccCccccccCcccchHHHHhcCceecHHHHHHHHHCccccCCCCC
Confidence            67899999988 999999776421 112221  111110                  1247888888887653     37


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhC
Q 030717          125 MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       125 MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      || |.            ..+|++|+++|++||.++..+
T Consensus        79 Mp-~~------------~l~s~~ei~~l~aYl~sl~~~  103 (107)
T 1co6_A           79 MI-FA------------GVKDEQKVSDLIAYIKQFNAD  103 (107)
T ss_dssp             CC-CC------------CCCCHHHHHHHHHHHHTBCTT
T ss_pred             CC-CC------------CCCCHHHHHHHHHHHHHcccC
Confidence            99 74            556899999999999998644

>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}

Probab=99.41  E-value=3.1e-13  Score=94.98  Aligned_cols=84  Identities=17%  Similarity=0.254  Sum_probs=50.9

Q ss_pred             hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC-CCCHHHHHHHHH-----------------h--CCCCCCCC
Q 030717           69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG-VDTEDEIYHVTY-----------------F--GKGRMPGF  128 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~-~~~~~~l~~~i~-----------------~--g~~~MP~~  128 (172)
                      ++++|++||+.+|++||+.++.+.+  .....|+|.+.. ..+.++|...+.                 .  +...||+|
T Consensus         2 d~~~G~~lf~~~C~~CH~~~g~~~g--~~~~gP~L~~~~~~~~~~~l~~~i~~p~~~~~g~~~~~~~~~~g~~~~~Mp~~   79 (110)
T 2l4d_A            2 SFTSGEQIFRTRCSSCHTVGNTEPG--QPGIGPDLLGVTRQRDANWLVRWLKVPDQMLAEKDPLAMLLFEQYNRLAMPNM   79 (110)
T ss_dssp             ---CHHHHHHHHTTTTCCSSCSBTT--BCTTSCCCTTGGGTSCTTHHHHHTTSHHHHHHTTCHHHHHHHHHHTSCCCCCC
T ss_pred             CHHHHHHHHHHhhHHhcCCCCCCCC--CCCCCCChhhhhcccCHHHHHHHHhChhhhccCcchHHHHHHhccCcCcCCCC
Confidence            5788999999999999998765211  111234443321 112333333221                 1  13589998


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCCCCCcC
Q 030717          129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIE  168 (172)
Q Consensus       129 ~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw~~~~  168 (172)
                      .              ||++|+++|++||.++.......+.
T Consensus        80 ~--------------Ls~~ei~~l~~yl~~~~~~~~~~~~  105 (110)
T 2l4d_A           80 R--------------LGDAEVSALISYLEEETARLQTPVT  105 (110)
T ss_dssp             C--------------CCHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             C--------------CCHHHHHHHHHHHHHcccccCcccc
Confidence            3              9999999999999998755444443

>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}

Probab=99.40  E-value=6e-13  Score=95.78  Aligned_cols=78  Identities=22%  Similarity=0.385  Sum_probs=56.5

Q ss_pred             cCchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC-----------------CCCC
Q 030717           64 LAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK-----------------GRMP  126 (172)
Q Consensus        64 ~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~-----------------~~MP  126 (172)
                      ....+++++|+.||..+|++||+.++.+.  ++.  +..+..  ..+.+.|...|.+|.                 ..||
T Consensus        28 ~~~~~~~~~G~~l~~~~C~~CH~~~g~~~--gP~--l~~~~~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~Mp  101 (124)
T 3cp5_A           28 QIDAALAQQGEQLFNTYCTACHRLDERFI--GPA--LRDVTK--RRGPVYIMNVMLNPNGMIQRHPVMKQLVQEYGTMMT  101 (124)
T ss_dssp             SCCHHHHHHHHHHHHHHTTTTCCSSSCSS--SCC--CTTHHH--HSCHHHHHHHHHCHHHHHHHCHHHHHHHHHHCSCCC
T ss_pred             cCChHHHHHHHHHHHHhhHHhCCCCCCCC--CCC--cccccc--ccCHHHHHHHHhChHhhcccchhHHHHHhcCCCCCC
Confidence            34567889999999999999999875422  222  233322  125777888777664                 4799


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717          127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       127 ~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~  161 (172)
                      .+              .||++|+++|++||.++..
T Consensus       102 ~~--------------~Ls~~ei~~l~~Yl~~l~~  122 (124)
T 3cp5_A          102 DM--------------ALSEEQARAILEYLRQVAE  122 (124)
T ss_dssp             CC--------------CCCHHHHHHHHHHHHHHHH
T ss_pred             CC--------------CCCHHHHHHHHHHHHHhCC
Confidence            65              5999999999999999864

>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*

Probab=99.39  E-value=1.5e-13  Score=92.20  Aligned_cols=71  Identities=27%  Similarity=0.396  Sum_probs=51.9

Q ss_pred             HHHHHH-ccCccccCCCCCCCCCCCCccchhhhcC-CC--CCHHHHHHHHHhCC------CCCCCCCCCCCCCCCCCCCC
Q 030717           73 GVSLFR-QACIGCHDGGGNVIQPGATLFLKDLQRN-GV--DTEDEIYHVTYFGK------GRMPGFGEKCTPRGQCTFGA  142 (172)
Q Consensus        73 G~~lf~-~~C~~CHg~~g~~~~~~~~~~~p~l~~~-~~--~~~~~l~~~i~~g~------~~MP~~~~~~~~~~~~~~~~  142 (172)
                      |++||. .+|++||+.++.+.  ++  .++.+... ..  .+.+.|.+.|++|.      ..||+|             .
T Consensus         1 ~~~l~~~~~C~~CHg~~g~~~--gp--~l~~~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-------------~   63 (81)
T 1a56_A            1 DADLAKKNNCIACHQVETKVV--GP--ALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPN-------------V   63 (81)
T ss_dssp             CHHHHHHHSHHHHBCSSCBSS--SC--CHHHHHHHHTTSSSHHHHHHHHHHHCBSSSSSSCCBCSC-------------C
T ss_pred             CHhHHhccCchhhCCCCCCcC--Cc--CHHHHHHHhcCCccHHHHHHHHHHcCCCCCCCCCCCCCC-------------C
Confidence            578886 79999999887642  22  24555421 11  12788999999985      369998             4


Q ss_pred             CCCHHHHHHHHHHHHhhh
Q 030717          143 RLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       143 ~Lsd~ei~~VaaYl~~~~  160 (172)
                      .||++|+++|++||.+++
T Consensus        64 ~Ls~~ei~~l~~yl~~lk   81 (81)
T 1a56_A           64 NVSDADAKALADWILTLK   81 (81)
T ss_dssp             SSSSHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhCC
Confidence            699999999999999863

>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1

Probab=99.38  E-value=5.6e-13  Score=98.62  Aligned_cols=94  Identities=18%  Similarity=0.296  Sum_probs=58.7

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCcc--chhhhcC--CCCCHHHHHHHHHhCCCC-----C----CCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLF--LKDLQRN--GVDTEDEIYHVTYFGKGR-----M----PGFGEKC  132 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~--~p~l~~~--~~~~~~~l~~~i~~g~~~-----M----P~~~~~~  132 (172)
                      ..+++++|++||..+|++||+ ++. ...++.+.  .+.+...  ..++.+.|...++++...     |    |...+  
T Consensus        22 ~~~d~~~G~~lf~~~Ca~CH~-~g~-~~~gP~L~lg~~~~~~s~~~~~~~~~L~~~l~~p~~~~~~~~~~~~~p~~~~--   97 (135)
T 1e29_A           22 TARQFTNGQKIFVDTCTQCHL-QGK-TKTNNNVSLGLADLAGAEPRRDNVLALVEFLKNPKSYDGEDDYSELHPNISR--   97 (135)
T ss_dssp             CHHHHHHHHHHHHHHTHHHHG-GGC-BSSSSSCSSSHHHHHTSSSCCSSHHHHHHHHHSCBCTTSCSBCTTTSCCTTC--
T ss_pred             CcccHHHHHHHHHhHHHHhcC-CCC-CCCCCCceeccccccccccccCCHHHHHHHHhChhhccCccccccccccccc--
Confidence            456889999999989999998 322 12222221  1333321  127899999999876431     1    11110  


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHhhhh--CCCC
Q 030717          133 TPRGQCTFGARLQDEDIKLLAQFVKSQAD--QGWP  165 (172)
Q Consensus       133 ~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~--~gw~  165 (172)
                       ...+-.+ ..||++|+++|++||.+++.  ++|.
T Consensus        98 -~~~mp~~-~~Lsd~ei~~laaYl~~~~~~~~~w~  130 (135)
T 1e29_A           98 -PDIYPEM-RNYTEDDIFDVAGYTLIAPKLDERWG  130 (135)
T ss_dssp             -TTTCGGG-TTCCHHHHHHHHHHHHHHHHHCTTSC
T ss_pred             -hhccccc-ccCCHHHHHHHHHHHHhccCcCCCCC
Confidence             0000000 36999999999999999874  7887

>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*

Probab=99.38  E-value=4e-13  Score=89.79  Aligned_cols=70  Identities=27%  Similarity=0.504  Sum_probs=51.0

Q ss_pred             hHHHHHHc-cCccccCCCCCCCCCCCCccchhhhcC-C--CCCHHHHHHHHHhCCC------CCCCCCCCCCCCCCCCCC
Q 030717           72 KGVSLFRQ-ACIGCHDGGGNVIQPGATLFLKDLQRN-G--VDTEDEIYHVTYFGKG------RMPGFGEKCTPRGQCTFG  141 (172)
Q Consensus        72 ~G~~lf~~-~C~~CHg~~g~~~~~~~~~~~p~l~~~-~--~~~~~~l~~~i~~g~~------~MP~~~~~~~~~~~~~~~  141 (172)
                      +|++||+. +|++||+.++.+.  ++.  +..+... .  ..+.+.|...|.+|..      .||+|             
T Consensus         2 ~G~~l~~~~~C~~CHg~~g~g~--gP~--l~~~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-------------   64 (82)
T 1cch_A            2 DGEALFKSKPCAACHSVDTKMV--GPA--LKEVAAKNAGVEGAADTLALHIKNGSQGVWGPIPMPPN-------------   64 (82)
T ss_dssp             CSHHHHHHSTHHHHSCSSSCSS--SCC--HHHHHHHSSSCGGGHHHHHHHHHTCCCSSSSSCCCCCC-------------
T ss_pred             cHHHHHHhCCChhhcCCCCCCC--CcC--hHHHHHHcCCCchHHHHHHHHhhcCCCCCCCCCCCCCC-------------
Confidence            58999985 8999999887642  222  3333321 1  1126789999999853      48887             


Q ss_pred             CCCCHHHHHHHHHHHHhh
Q 030717          142 ARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~  159 (172)
                       .||++|+++|++||.++
T Consensus        65 -~ls~~ei~~l~~yl~~l   81 (82)
T 1cch_A           65 -PVTEEEAKILAEWVLSL   81 (82)
T ss_dssp             -SCCHHHHHHHHHHHHHC
T ss_pred             -CCCHHHHHHHHHHHHhc
Confidence             39999999999999986

>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*

Probab=99.38  E-value=5.2e-13  Score=95.05  Aligned_cols=73  Identities=19%  Similarity=0.237  Sum_probs=51.4

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC------------------------CCCCHHHHHHHHHhCC-
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN------------------------GVDTEDEIYHVTYFGK-  122 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~------------------------~~~~~~~l~~~i~~g~-  122 (172)
                      +|+++|++||+ +|++||+.++.+...    ..|.|.+.                        ..++.+.|...|.+++ 
T Consensus         2 gd~~~G~~lf~-~Ca~CH~~~g~g~~~----~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~i~~p~~   76 (112)
T 3c2c_A            2 GDAAAGEKVSK-KCLACHTFDQGGANK----VGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKA   76 (112)
T ss_dssp             CCHHHHHHHGG-GGTTTCCCSTTCCCS----SSCCCTTCTTSBSSCCTTSCCCHHHHHHHHTTCBCCHHHHHHHHHCHHH
T ss_pred             ccHHHHHHHHH-hHHhhCCCCCCCCCC----CCCCcccccCCcccccccccccHHHHhccccCcccCHHHHHHHHhChhh
Confidence            46889999997 999999987543211    12333321                        1257888888887653 


Q ss_pred             ------------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          123 ------------GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       123 ------------~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                                  ..|| |             ..++++||++|++||+++
T Consensus        77 ~~~g~~~~~~~~~~Mp-~-------------~l~~~~di~~l~aYl~sl  111 (112)
T 3c2c_A           77 FVLEKSGDPKAKSKMT-F-------------KLTKDDEIENVIAYLKTL  111 (112)
T ss_dssp             HHHHHHCCTTCCCSCC-C-------------CCCCHHHHHHHHHHHTTC
T ss_pred             hcCCCcCCccccCCCC-C-------------cCCCHHHHHHHHHHHHHc
Confidence                        5798 8             434589999999999876

>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*

Probab=99.37  E-value=1.6e-13  Score=100.57  Aligned_cols=73  Identities=25%  Similarity=0.501  Sum_probs=56.3

Q ss_pred             hHHHHHHccCccccCCCCCCCCCCCCccchhhhcC------CCCCHHHHHHHHHhCC------------CCCCCCCCCCC
Q 030717           72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN------GVDTEDEIYHVTYFGK------------GRMPGFGEKCT  133 (172)
Q Consensus        72 ~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~------~~~~~~~l~~~i~~g~------------~~MP~~~~~~~  133 (172)
                      +|++||.. |++|||.+|.+..+    ..|.|.+.      ...+.+.|.+.|.+|.            ..||+|.    
T Consensus         3 ~G~~ly~~-Ca~CHg~~g~G~~~----~~P~L~~~~~~~~~~~~~~~~l~~~i~~g~~g~~~~~g~~~~~~MP~~~----   73 (131)
T 1c52_A            3 DGAKIYAQ-CAGCHQQNGQGIPG----AFPPLAGHVAEILAKEGGREYLILVLLYGLQGQIEVKGMKYNGVMSSFA----   73 (131)
T ss_dssp             CHHHHTHH-HHHHHCTTSCCBTT----TBCCCTTHHHHHHTSTTHHHHHHHHHHHCEEEEEEETTEEEEEEECCCT----
T ss_pred             cHHHHHHH-HHHhcCCCCCCCCC----CCCCCCCCccccccccCCHHHHHHHHHhcccccccccCCccCCCCCCcc----
Confidence            69999988 99999988775432    24555432      1236788999999884            3699993    


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhhhhC
Q 030717          134 PRGQCTFGARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       134 ~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                               .||++||++|++||.++..+
T Consensus        74 ---------~Lsd~ei~~l~~Yl~~~~~~   93 (131)
T 1c52_A           74 ---------QLKDEEIAAVLNHIATAWGD   93 (131)
T ss_dssp             ---------TSCHHHHHHHHHHHHHTTST
T ss_pred             ---------cCCHHHHHHHHHHHHHHcCC
Confidence                     79999999999999998654

>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1

Probab=99.37  E-value=1.6e-12  Score=90.56  Aligned_cols=76  Identities=18%  Similarity=0.232  Sum_probs=52.1

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCcc--chhh-----hcC----------CCCCHHHHHHHHHhCC-----CCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLF--LKDL-----QRN----------GVDTEDEIYHVTYFGK-----GRM  125 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~--~p~l-----~~~----------~~~~~~~l~~~i~~g~-----~~M  125 (172)
                      +|+++|++||+ +|++||+.++.+.  ++.+.  ....     .++          ..++.+.|...+.+++     ..|
T Consensus         2 gd~~~G~~l~~-~C~~CH~~~~~~~--gP~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~M   78 (100)
T 1qn2_A            2 GDAAAGEKAFA-PCKACHNFEKNGV--GPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPKKKVPGTKM   78 (100)
T ss_dssp             CCHHHHHHHTG-GGGGTCCSSSCSS--SCCCTTCTTSBTTTCTTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred             ccHHHHHHHHH-HHHHhcCCCCCCC--CCCcccccCccccccCCCccccHHHHhcCcccCHHHHHHHHhCcccccCCCCC
Confidence            46889999996 5999999874322  22211  0000     010          1357889999888753     379


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       126 P~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                      | |.            ..+|++|+++|++||.++
T Consensus        79 p-~~------------~~~s~~di~~l~aYl~sl   99 (100)
T 1qn2_A           79 V-FP------------GISDPKKVDDIIAYLKTK   99 (100)
T ss_dssp             C-CC------------CCCCHHHHHHHHHHHHHC
T ss_pred             C-CC------------CCCCHHHHHHHHHHHHhc
Confidence            8 75            667999999999999986

>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1

Probab=99.37  E-value=4.4e-13  Score=99.36  Aligned_cols=76  Identities=21%  Similarity=0.117  Sum_probs=51.2

Q ss_pred             hhHHhHHHHHHccCccccCCCCC-CCCC-CCCccchhhhcC------------------------CCCCHHHHHHHHHhC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGN-VIQP-GATLFLKDLQRN------------------------GVDTEDEIYHVTYFG  121 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~-~~~~-~~~~~~p~l~~~------------------------~~~~~~~l~~~i~~g  121 (172)
                      +++++|+++|+ +|++||+.++. +... +.....|+|.+.                        ..|+.+.|...+.++
T Consensus        22 ~~~~~G~~lf~-~C~~CH~~~~~~G~~~~~~~~~gP~L~~i~~r~~g~~~~~~ys~~l~~~~~~g~~w~~~~l~~~i~~p  100 (137)
T 1c2n_A           22 GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP  100 (137)
T ss_dssp             CCHHHHHHHHH-HHTTTCCBCCTTSCCSBCCCCSSCCCTTCTTSCSSCCSSCCCCHHHHHHHHTTCCCCHHHHHHHTTST
T ss_pred             cChHHHHHHHH-hHHhhCCCCCCCccccccccCCCcchhcccccccCCCCcccccHHHHhhhhcCccCCHHHHHHHHhCH
Confidence            68899999998 99999997632 1100 000112333210                        136788888887776


Q ss_pred             C-------------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          122 K-------------GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       122 ~-------------~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                      +             ..|| |             . ||++|+ +|++||.++.
T Consensus       101 ~~~~~g~~~~~~~~~~Mp-~-------------~-Lsd~e~-~liaYL~sl~  136 (137)
T 1c2n_A          101 GAFLKEKLDDKKAKTGMA-F-------------K-LAKGGE-DVAAYLASVV  136 (137)
T ss_dssp             THHHHHHHTCSCCCCSCC-C-------------C-CSSSHH-HHHHHHHHHC
T ss_pred             HhhCCCcccccCcCCCCC-C-------------C-CCcHHH-HHHHHHHHcc
Confidence            4             4677 5             5 999999 9999999874

>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=99.37  E-value=1.1e-12  Score=109.44  Aligned_cols=80  Identities=26%  Similarity=0.498  Sum_probs=63.1

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc-----CCCCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR-----NGVDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCTF  140 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~-----~~~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~~  140 (172)
                      ..++++|+++|..+|++|||.+|.+....   ..|+|.+     ++ .+.+.|.+.+.+|+ +.||+|.           
T Consensus       219 ~~~~~~G~~lf~~~Ca~CHg~~g~G~~~~---~~P~L~~~~~~~~~-~~~~~l~~~i~~g~~g~MP~~~-----------  283 (311)
T 3mk7_C          219 DADLSAGKNVYAQTCAVCHGQGGEGMAAL---GAPKLNSAAGWIYG-SSLGQLQQTIRHGRNGQMPAQQ-----------  283 (311)
T ss_dssp             CCCHHHHHHHHHHTTHHHHCTTSCCBTTT---TBCCSSCGGGCSSC-CSHHHHHHHHHHCBCCEECCCT-----------
T ss_pred             cccchhhHHHHhhhHHhcCCCCCCCCccc---CCCCCCcchhhhcc-CCHHHHHHHHHhCccccCcccc-----------
Confidence            36789999999999999999887754321   1355544     22 46899999999997 4799997           


Q ss_pred             CCCCCHHHHHHHHHHHHhhhhC
Q 030717          141 GARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       141 ~~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                       ..||++|+++|++||.++..+
T Consensus       284 -~~Ls~~ei~~laaYl~sl~~~  304 (311)
T 3mk7_C          284 -QYLGDDKVHLLAAYVYSLSQK  304 (311)
T ss_dssp             -TTTHHHHHHHHHHHHHHHCC-
T ss_pred             -cCCCHHHHHHHHHHHHHcCCC
Confidence             789999999999999998643

>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*

Probab=99.35  E-value=9.9e-14  Score=106.60  Aligned_cols=103  Identities=12%  Similarity=0.128  Sum_probs=68.3

Q ss_pred             cchhhhHHHHHHHhHHHHhhhhcccccCchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHH
Q 030717           38 LELQKYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHV  117 (172)
Q Consensus        38 ~~~~~mr~l~~l~~~l~~~~~~~a~~~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~  117 (172)
                      ++.++|+-+...+..   ..............+..|+.+|..+|++|||.+|.+.....  .+|.|.+.   ....+...
T Consensus        61 Ls~~di~~la~Y~~s---~~~~~~~~~~~~~~~~~g~~~~~~~Ca~CHg~~G~G~~~~~--~~P~L~gq---~~~yl~~~  132 (174)
T 3vrd_A           61 YSTADFQKMAEYFKQ---QTYQPVKQSFDKALVAKGTKLHDKYCEKCHVESGKPLADQD--EYHILAGQ---WTPYLRYA  132 (174)
T ss_dssp             SCHHHHHHHHHHHHH---SCCCCCCCCCCGGGHHHHHHHHHHHTTTTSGGGGCCCTTCS--SCCCCTTS---CHHHHHHH
T ss_pred             CCHHHHHHHHhhhhc---ccccccccccchhhhccchhhhcchhHhhcCcCCCCCCCCC--CCCccCCC---CHHHHHHH
Confidence            455666655443322   21112233445567889999999999999998877542221  26777655   45555554


Q ss_pred             H---HhCCC--------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          118 T---YFGKG--------RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       118 i---~~g~~--------~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                      +   ++|.+        .||.|.            ..|||+||++|++||.+++
T Consensus       133 L~~~~~g~r~~~~~~~~~M~~~a------------~~Lsd~eI~alaaY~~S~k  174 (174)
T 3vrd_A          133 IEDFRAERRPMEKKMASKLKELL------------KAEGEDGLDALFAFYASQQ  174 (174)
T ss_dssp             HHHHHTTSSCCCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCcCCCCccchhhHHHH------------hhCCHHHHHHHHHHHHHcC
Confidence            4   45532        589987            7899999999999999873

>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1

Probab=99.30  E-value=2e-12  Score=93.01  Aligned_cols=73  Identities=25%  Similarity=0.315  Sum_probs=50.4

Q ss_pred             hhHHhHHHHHHccCccccCCCCCC-CCCCCCccchhhhcC------------------------CCCCHHHHHHHHHhC-
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNV-IQPGATLFLKDLQRN------------------------GVDTEDEIYHVTYFG-  121 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~-~~~~~~~~~p~l~~~------------------------~~~~~~~l~~~i~~g-  121 (172)
                      +|+++|++|| ++|++||+.++.+ ...+     |+|.+.                        ..++.+.|...|.++ 
T Consensus         3 gd~~~G~~lf-~~C~~CH~~~~~~~~~~g-----P~L~gi~~r~~~~~~~~~y~~~~~~~~~~g~~~~~~~l~~~i~~p~   76 (121)
T 1jdl_A            3 GDPAKGEAVF-KKCMACHRVGPDAKNLVG-----PALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPN   76 (121)
T ss_dssp             CCHHHHHHHG-GGTTTTCCCSTTCCCSSS-----CCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHH-hhhhhhCCCCCCCCCCCC-----CCchhhcCCccccccCccccHHHHhhhhcCCccCHHHHHHHHhCcc
Confidence            5788999999 7999999976432 1122     233221                        125677787776543 


Q ss_pred             ------------------CCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhhhh
Q 030717          122 ------------------KGRMPGFGEKCTPRGQCTFGARLQD-EDIKLLAQFVKSQAD  161 (172)
Q Consensus       122 ------------------~~~MP~~~~~~~~~~~~~~~~~Lsd-~ei~~VaaYl~~~~~  161 (172)
                                        ...|| |             . |++ +|+++|++||.++..
T Consensus        77 ~~~~g~~~~~~~~~~~~~~~~Mp-~-------------~-l~~~~ei~~l~aYL~sl~~  120 (121)
T 1jdl_A           77 AFLRKFLADAGHAEQAKGSTKMV-F-------------K-LPDEQERKDVVAYLKQFSP  120 (121)
T ss_dssp             HHHHHHHHHTTCGGGGSSCCSCC-C-------------C-CCCHHHHHHHHHHHGGGCC
T ss_pred             cccCCcccccchhhcccccccCC-c-------------c-CCCHHHHHHHHHHHHHccc
Confidence                              25787 6             5 666 999999999998853

>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*

Probab=99.28  E-value=1.9e-12  Score=86.61  Aligned_cols=67  Identities=27%  Similarity=0.438  Sum_probs=48.0

Q ss_pred             HHHH-ccCccccCCCCCCCCCCCCccchhhhc-CC--CCCHHHHHHHHHhCCCC------CCCCCCCCCCCCCCCCCCCC
Q 030717           75 SLFR-QACIGCHDGGGNVIQPGATLFLKDLQR-NG--VDTEDEIYHVTYFGKGR------MPGFGEKCTPRGQCTFGARL  144 (172)
Q Consensus        75 ~lf~-~~C~~CHg~~g~~~~~~~~~~~p~l~~-~~--~~~~~~l~~~i~~g~~~------MP~~~~~~~~~~~~~~~~~L  144 (172)
                      +||. .+|++||+.+|.+.  ++.  ++.+.+ +.  .++.+.|...+++|...      ||+|              .|
T Consensus         3 ~l~~~~~C~~CHg~~g~g~--gP~--l~~~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~--------------~L   64 (80)
T 1ayg_A            3 QLAKQKGCMACHDLKAKKV--GPA--YADVAKKYAGRKDAVDYLAGKIKKGGSGVWGSVPMPPQ--------------NV   64 (80)
T ss_dssp             TTTTSSSSGGGCCSSCCSS--SCC--HHHHHHHCSSCTTHHHHHHHHHHSCBCSSSCSCCBCCC--------------CC
T ss_pred             hhHhhCCchhhcCCCCCCC--CCC--hHHHHHHhcCCccHHHHHHHHHHcCCCCCCCCCCCCCC--------------CC
Confidence            4674 58999999887642  222  344432 21  23468899999998652      8887              39


Q ss_pred             CHHHHHHHHHHHHhh
Q 030717          145 QDEDIKLLAQFVKSQ  159 (172)
Q Consensus       145 sd~ei~~VaaYl~~~  159 (172)
                      ||+||++|++||.++
T Consensus        65 sd~ei~~l~~yl~~l   79 (80)
T 1ayg_A           65 TDAEAKQLAQWILSI   79 (80)
T ss_dssp             CHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999999986

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.28  E-value=1.2e-12  Score=118.77  Aligned_cols=85  Identities=21%  Similarity=0.388  Sum_probs=68.1

Q ss_pred             CchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCC---CCCCCCCCCCCCCCCCCC
Q 030717           65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKG---RMPGFGEKCTPRGQCTFG  141 (172)
Q Consensus        65 a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~---~MP~~~~~~~~~~~~~~~  141 (172)
                      ...+++++|++||+.+|++||+.++.+..    ...|+|.+....+.+.|.+.|++|..   .||+|.            
T Consensus       588 ~~~~~~~~G~~l~~~~C~~CHg~~g~g~~----~~~P~L~~~~~~~~~~l~~~i~~g~~~~~~Mp~~~------------  651 (677)
T 1kb0_A          588 YDPAKVEAGTMLYVANCVFCHGVPGVDRG----GNIPNLGYMDASYIENLPNFVFKGPAMVRGMPDFT------------  651 (677)
T ss_dssp             CCGGGHHHHHHHHHHHTHHHHCSTTTSCC----SSSCCGGGSCHHHHHTHHHHHSSCTTGGGTCCCCT------------
T ss_pred             CChhhHHHHHHHHhhhhhhhCCCCCcCCC----CCCCCccccCcccHHHHHHHHHcCCCCCCCCCccc------------
Confidence            34567899999999999999998876432    22577766544467789999999965   799996            


Q ss_pred             CCCCHHHHHHHHHHHHhhhhCCCC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQGWP  165 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~gw~  165 (172)
                      ..||++||++|++||++++.+.|+
T Consensus       652 ~~ls~~ei~~l~~Yl~~l~~~~~~  675 (677)
T 1kb0_A          652 GKLSGDDVESLKAFIQGTADAIRP  675 (677)
T ss_dssp             TTSCTTHHHHHHHHHHHHHHHHCC
T ss_pred             ccCCHHHHHHHHHHHHhccccCCC
Confidence            679999999999999999876664

>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B*

Probab=99.28  E-value=6.4e-12  Score=99.68  Aligned_cols=86  Identities=17%  Similarity=0.269  Sum_probs=59.0

Q ss_pred             cCchhhHHhHHHHHHc----------------cCccccCCCCCCCCCCCCccchhhhcCC---CCCHHHHH---HHHHhC
Q 030717           64 LAQTVDIQKGVSLFRQ----------------ACIGCHDGGGNVIQPGATLFLKDLQRNG---VDTEDEIY---HVTYFG  121 (172)
Q Consensus        64 ~a~~~d~~~G~~lf~~----------------~C~~CHg~~g~~~~~~~~~~~p~l~~~~---~~~~~~l~---~~i~~g  121 (172)
                      ....+|.++|++||..                +|++||+.+|.+...+.  ..|+|.+..   .++.+.|.   ..|.++
T Consensus        92 g~~~gd~~~Ge~lf~~G~g~~~~d~g~~ly~~~CaaCHg~dG~G~~~G~--~GP~Lag~~~~r~~~~~~L~~~~~~I~~~  169 (208)
T 3oa8_B           92 GPVLGSWKDGAKVAQNGRGGQFSDPPGTVSGGNCYACHQLDPKEVSYGT--LGPSLVGYGRERNFSAEDAKIAFAKVYDA  169 (208)
T ss_dssp             SCSCCCHHHHHHHHHCCCSSSTTSCTTCCCCCCGGGTCCCSTTCCCCCS--SSCCCTTHHHHTTTCHHHHHHHHHHHHCG
T ss_pred             CcCccCHHHHHHHHhccccccccchhhhhhcccchhhCCCCCcCCCCCC--cCCCcccccccccCCHHHHHHHHHHhhCc
Confidence            3445789999999975                89999998877532221  135555432   24666655   445543


Q ss_pred             -----CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717          122 -----KGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       122 -----~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~  161 (172)
                           ...||+|+.          ...|||+||++|++||.++..
T Consensus       170 ~~~~p~~~MP~fa~----------~g~LSdeEIaaLaaYL~s~~s  204 (208)
T 3oa8_B          170 QASLACSSMPRFGV----------NGVLTEQQIKDVVAYLFDPES  204 (208)
T ss_dssp             GGTSTTCSSCCTTT----------TTSSCHHHHHHHHHHHHCTTS
T ss_pred             cCCCCCCCCCcccc----------cCCCCHHHHHHHHHHHHccCC
Confidence                 348999961          025999999999999998753

>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*

Probab=99.25  E-value=1.3e-12  Score=100.24  Aligned_cols=76  Identities=25%  Similarity=0.367  Sum_probs=54.7

Q ss_pred             chhhHHhHHHHHHc--------cCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHH---HHHhCCC-------CCCC
Q 030717           66 QTVDIQKGVSLFRQ--------ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYH---VTYFGKG-------RMPG  127 (172)
Q Consensus        66 ~~~d~~~G~~lf~~--------~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~---~i~~g~~-------~MP~  127 (172)
                      ...++++|++||..        +|++||+.+|.+...   ...|.|.+.   ....+..   .+.+|..       .||.
T Consensus        96 ~~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g~~~---~~~P~L~g~---~~~~~~~~l~~~~~g~~~~~~~~~~Mp~  169 (190)
T 1m70_A           96 DPALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDL---AGFPKLGGQ---HAAYTAKQLTDFREGNRTNDGDTMIMRG  169 (190)
T ss_dssp             CHHHHHHHHHHHHHCBGGGTBCCSHHHHCTTSCCBGG---GTBCCCTTC---CHHHHHHHHHHHHHTSCCTTTTTCHHHH
T ss_pred             cccchhhHHHHHhCCCcccCCcchhhcCCCCCCCCCC---CCCCCcCCC---CHHHHHHHHHHHHhCCCCCCCccccHHH
Confidence            45678899999988        899999988764322   125667654   3333333   3345532       6999


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       128 ~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                      |.            ..||++||++|++||+++
T Consensus       170 ~~------------~~Ls~~ei~~l~~Yl~sl  189 (190)
T 1m70_A          170 VA------------AKLSNKDIEALSSYIQGL  189 (190)
T ss_dssp             HH------------TTCCHHHHHHHHHHHHTC
T ss_pred             HH------------HhCCHHHHHHHHHHHHhC
Confidence            86            689999999999999986

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.25  E-value=1.6e-12  Score=118.31  Aligned_cols=82  Identities=21%  Similarity=0.373  Sum_probs=65.7

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC--CCCCCCCCCCCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK--GRMPGFGEKCTPRGQCTFGARL  144 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~--~~MP~~~~~~~~~~~~~~~~~L  144 (172)
                      .+++++|++||+.+|++|||.++.+ .    ...|+|.+....+.+.+.+.+++|.  ..||+|.            ..|
T Consensus       592 ~~~~~~G~~ly~~~Ca~CHg~~g~g-~----~~~P~L~~~~~~~~~~~~~~i~~G~~~~~Mp~~~------------~~l  654 (689)
T 1yiq_A          592 TASIEAGAKLYDGYCSQCHGIHAVS-G----GVLPDLRKLTPEKHQMFLGILFGGRVPDGMPSFA------------DAF  654 (689)
T ss_dssp             HHHHHHHHHHHHHHTHHHHCGGGCC-C----SSSCCTTSCCHHHHHTHHHHHTTTTGGGTCCCCT------------TTC
T ss_pred             HHHHHHHHHHHhhhhhhhCCCCCcC-C----CCCCCcccCCcCCHHHHHHHHHcCCCCCCCCccc------------cCC
Confidence            4568899999999999999987764 1    1256665543346778899999998  4899997            679


Q ss_pred             CHHHHHHHHHHHHhhhhCCCC
Q 030717          145 QDEDIKLLAQFVKSQADQGWP  165 (172)
Q Consensus       145 sd~ei~~VaaYl~~~~~~gw~  165 (172)
                      |++||++|++||+++..+.|.
T Consensus       655 s~~ei~~l~~Yl~~~~~~~~~  675 (689)
T 1yiq_A          655 TPEQVDQIHQYLIKRAHDLHQ  675 (689)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccccccc
Confidence            999999999999999866654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.24  E-value=2e-12  Score=117.23  Aligned_cols=84  Identities=24%  Similarity=0.424  Sum_probs=66.0

Q ss_pred             CchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCC---CCCCCCCCCCCCCCCCCC
Q 030717           65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKG---RMPGFGEKCTPRGQCTFG  141 (172)
Q Consensus        65 a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~---~MP~~~~~~~~~~~~~~~  141 (172)
                      ....++++|++||+.+|++|||.++.+ ..    ..|+|.+....+.+.+.+.+++|..   .||+|.            
T Consensus       575 ~~~~~~~~G~~l~~~~Ca~CHg~~g~g-~~----~~P~L~~~~~~~~~~~~~~i~~G~~~~~~Mp~~~------------  637 (668)
T 1kv9_A          575 AAPEQVQAGKQLYGQFCSVCHGMGTIS-GG----LIPDLRQSSDATREHFQQIVLQGALKPLGMPSFD------------  637 (668)
T ss_dssp             CCHHHHHHHHHHHHHHTHHHHCGGGCC-CS----SSCCGGGCCHHHHHTHHHHHHHCTTGGGTCCCCT------------
T ss_pred             CCHHHHHHHHHHHhhhhHhhCcCCCcC-CC----CCCCCcCCCCCCHHHHHHHHHhCCCCCCCCCccc------------
Confidence            345678899999999999999988764 21    2567765433457778889999963   799997            


Q ss_pred             CCCCHHHHHHHHHHHHhhhhCCCC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQGWP  165 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~gw~  165 (172)
                      ..||++||++|++||+++..++|+
T Consensus       638 ~~ls~~ei~~l~~yl~~~~~~~~~  661 (668)
T 1kv9_A          638 DSLKPEEVEQIKLYVMSREYEDYM  661 (668)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhccCCCcc
Confidence            789999999999999998765543

>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4

Probab=99.24  E-value=3.5e-12  Score=97.29  Aligned_cols=74  Identities=20%  Similarity=0.309  Sum_probs=55.4

Q ss_pred             chhhHHhHHHHHHc--------cCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHH---HhCC---CCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQ--------ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT---YFGK---GRMPGFGEK  131 (172)
Q Consensus        66 ~~~d~~~G~~lf~~--------~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i---~~g~---~~MP~~~~~  131 (172)
                      ...++++|++||..        +|++||+.++.+ .    ...|.|.+.   ....+...+   .+|.   ..||+|.  
T Consensus        96 ~~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g-~----~~~P~L~~~---~~~~~~~~l~~~~~g~~~~~~Mp~~~--  165 (183)
T 1h1o_A           96 KHAGAKEGKAIFNQGVTNEQIPACMECHGSDGQG-A----GPFPRLAGQ---RYGYIIQQLTYFHNGTRVNTLMNQIA--  165 (183)
T ss_dssp             CCTTHHHHHHHHHHCBGGGTBCCTHHHHCTTSCC-B----TTBCCCTTC---CHHHHHHHHHHHHHTSSCCHHHHHHH--
T ss_pred             chhhHHhHHHHHHcCCcccCCCcchhhCCCCCCC-C----CCCCCCCCC---CHHHHHHHHHHHHcCCCCCcchHHHH--
Confidence            34668899999987        999999988764 2    126777654   455555544   3443   2599997  


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          132 CTPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       132 ~~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                                ..||++||++|++||.++
T Consensus       166 ----------~~Ls~~ei~~l~~yl~sl  183 (183)
T 1h1o_A          166 ----------KNITVAQMKDVAAYLSSL  183 (183)
T ss_dssp             ----------TTCCHHHHHHHHHHHHHC
T ss_pred             ----------HhCCHHHHHHHHHHHHhC
Confidence                      689999999999999874

>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1

Probab=99.24  E-value=9.9e-12  Score=92.22  Aligned_cols=99  Identities=14%  Similarity=0.096  Sum_probs=60.8

Q ss_pred             hhhHHhHHHHHHccCccccCCCCC-CCCCCCCccchhhhcC--------------------------CCCCHHHHHHHHH
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGN-VIQPGATLFLKDLQRN--------------------------GVDTEDEIYHVTY  119 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~-~~~~~~~~~~p~l~~~--------------------------~~~~~~~l~~~i~  119 (172)
                      ++|+++|++||.+ |++||+.++. +...+.....|+|.+.                          ..|+.+.|...|.
T Consensus         3 ~gd~~~G~~lF~~-CaaCH~~~~~~g~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~~~~w~~~~L~~~i~   81 (135)
T 155c_A            3 EGDAAKGEKEFNK-CKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEANLIEYVT   81 (135)
T ss_dssp             CCCSHHHHHHHTT-TTTTEECCCSSSCSSCCCSSEEECSSCTTSCTTCSSSSCCCHHHHHHHHHCSCCCCCSHHHHHHHH
T ss_pred             ccCHHHHHHHHHH-HHHhcCCCCCCCccccCCCCCCCcccccCccccccccccchHHHhhhhhccccccCCHHHHHHHHh
Confidence            3578899999976 9999986643 1100111123444432                          1367889999999


Q ss_pred             hCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCCCCCcCC
Q 030717          120 FGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIES  169 (172)
Q Consensus       120 ~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw~~~~~  169 (172)
                      +++..+|.+-..-..+..-.| . |+++|+ +|++||.++..++++.-.+
T Consensus        82 ~P~~~~pg~~~~~~~~t~Mpf-~-L~~~e~-dliAYL~sl~~~~~~~~~~  128 (135)
T 155c_A           82 DPKPLVKKMTDDKGAKTKMTF-K-MGKNQA-DVVAFLAQDDPDAXXXXXX  128 (135)
T ss_dssp             SSTTTTTTTSCCSCCCCSCCC-C-CCSCHH-HHHHHHHHHSCCSCSSCSC
T ss_pred             CHHhhCCCccccccccCCCCC-C-CCCHHH-HHHHHHHhcCCCCCccccc
Confidence            987666663100000000001 3 888888 9999999998887765443

>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*

Probab=99.22  E-value=1.2e-11  Score=88.55  Aligned_cols=71  Identities=25%  Similarity=0.477  Sum_probs=48.1

Q ss_pred             hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc--------------------CC-CCCHHHHHHHHHhCC-----
Q 030717           69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--------------------NG-VDTEDEIYHVTYFGK-----  122 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~--------------------~~-~~~~~~l~~~i~~g~-----  122 (172)
                      |+++|++||+ +|++||+.++...  |+.+  ..+.+                    .+ .|+.+.|.+.+.+++     
T Consensus         2 d~~~G~~lf~-~C~~CH~~~~~~~--GP~l--~gi~~r~~~~~~~~~y~~~~~~~~~~g~~w~~~~L~~~l~~p~~~~~g   76 (114)
T 1i8o_A            2 DAKAGEAVFK-QCMTCHRADKNMV--GPAL--AGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKK   76 (114)
T ss_dssp             CHHHHHHHHH-HHTTTCCSSSCSS--SCCC--TTCTTSBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred             cHHHHHHHHH-hHHhhCCCcccCc--Cccc--ccccccccccccchhhhHHHhhccccCccccHHHHHHHHHCHHhhCCC
Confidence            6789999995 9999998433322  2221  11111                    11 456888888775542     


Q ss_pred             --------------CCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhh
Q 030717          123 --------------GRMPGFGEKCTPRGQCTFGARLQD-EDIKLLAQFVKSQ  159 (172)
Q Consensus       123 --------------~~MP~~~~~~~~~~~~~~~~~Lsd-~ei~~VaaYl~~~  159 (172)
                                    ..|| |             . |++ +|+++|++||.++
T Consensus        77 ~~~d~~~~~~~~~~~~Mp-~-------------~-l~~~~d~~~liaYL~sl  113 (114)
T 1i8o_A           77 FLTEKGKADQAVGVTKMT-F-------------K-LANEQQRKDVVAYLATL  113 (114)
T ss_dssp             HHHHTTCGGGCCSCCSSC-C-------------C-CCCHHHHHHHHHHHHTT
T ss_pred             CcccccccccccccCcCC-C-------------C-CCCHHHHHHHHHHHHhc
Confidence                          5788 6             5 887 9999999999986

>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}

Probab=99.19  E-value=2.2e-11  Score=105.43  Aligned_cols=81  Identities=25%  Similarity=0.393  Sum_probs=60.3

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC--CCCHHHHHHHHHhCC------------CCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG--VDTEDEIYHVTYFGK------------GRMPGFGEK  131 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~--~~~~~~l~~~i~~g~------------~~MP~~~~~  131 (172)
                      ..+++++|++||+.+|++|||.+|.+...    ..|.|.+..  ..+.+.+.+.+++|.            ..||+|   
T Consensus       335 ~~~~~~~G~~ly~~~Ca~CHg~~g~g~~~----~~P~L~~~~~~~~~~~~~~~~i~~G~~~~~~~~g~~~~~~MP~~---  407 (442)
T 2zoo_A          335 KDEQIRFGQRVYEANCMACHQANGEGIPG----AFPPLAKSDYLNNNPLLGVNAIIKGLSGPIKVNNVNYNGVMPAM---  407 (442)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHCTTSCCBTT----TBCCCTTCHHHHHCHHHHHHHHHHCEESCEEETTEEECCEECCC---
T ss_pred             cchhhHHHHHHHHhhhHHhCCCCCCCCCC----CCCCCCCcccccCCHHHHHHHHHcCccccccccCCccCCCCCCC---
Confidence            34568899999999999999988775432    144554321  114567788888884            469999   


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCCC
Q 030717          132 CTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW  164 (172)
Q Consensus       132 ~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw  164 (172)
                                . |||+|+++|++||+++..+.-
T Consensus       408 ----------~-Lsd~ei~~l~~Yl~~~~~~~~  429 (442)
T 2zoo_A          408 ----------N-LNDEDIANVITFVLNNWDNAG  429 (442)
T ss_dssp             ----------C-CCHHHHHHHHHHHHTSTTCCC
T ss_pred             ----------C-CCHHHHHHHHHHHHHhcCCCC
Confidence                      5 999999999999999976543

>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*

Probab=99.18  E-value=5.1e-11  Score=89.05  Aligned_cols=76  Identities=25%  Similarity=0.331  Sum_probs=53.8

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc------------------CCCCCHHHHHHHHHhCC-----C
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR------------------NGVDTEDEIYHVTYFGK-----G  123 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~------------------~~~~~~~~l~~~i~~g~-----~  123 (172)
                      .+|+.+|++|| ++|.+||+.++.+ ..++.+.  .+.+                  ...|+.+.|.+.|.+++     .
T Consensus        41 ~~d~~~G~~lf-~~C~~CH~~~~~~-~~gP~L~--gv~~r~~~~~~g~~Ys~al~~~g~~w~~e~L~~~I~~P~~~~pgt  116 (140)
T 3m97_X           41 SADPAAGEKVF-GKCKACHKLDGND-GVGPHLN--GVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGT  116 (140)
T ss_dssp             TCCHHHHHHHG-GGTTTTCCSSSCC-SSSCCCT--TCTTCBTTCSTTCCCCHHHHHHCSBCCHHHHHHHHHCHHHHSTTC
T ss_pred             ccCHHHHHHHH-HhhhhhcCCCCCC-CcCCCcc--ccccccccccccccccHhhhhccccCCHHHHHHHHhcccccCCCC
Confidence            46789999999 7999999974321 1222211  1110                  01368999999999884     4


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          124 RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       124 ~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                      .|| |.            ..|+++|+++|++||+++
T Consensus       117 ~Mp-~~------------gllsdedi~aLiAYL~sL  139 (140)
T 3m97_X          117 KMA-FA------------GLPKIEDRANLIAYLEGQ  139 (140)
T ss_dssp             SCC-CC------------CCCSHHHHHHHHHHHHTC
T ss_pred             CCC-CC------------CCCCHHHHHHHHHHHHHc
Confidence            786 43            578999999999999986

>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*

Probab=99.17  E-value=1.5e-11  Score=91.02  Aligned_cols=81  Identities=19%  Similarity=0.260  Sum_probs=52.9

Q ss_pred             hhhHHhHHHHHHccCccccCCCCC-------CCCCCCCccc---------------hhh-----hc-CCCCCHHHHHHHH
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGN-------VIQPGATLFL---------------KDL-----QR-NGVDTEDEIYHVT  118 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~-------~~~~~~~~~~---------------p~l-----~~-~~~~~~~~l~~~i  118 (172)
                      .+|+++|++||.+ |++||...+.       +...|+.+..               +.+     .. ...|+.+.|...|
T Consensus         2 ~gd~~~G~~lF~~-C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~g~~w~~~~L~~~l   80 (134)
T 2bh4_X            2 EGDAAKGEKEFNK-CKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVWSEADLIEYV   80 (134)
T ss_dssp             CCCHHHHHHHGGG-TTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHHCTTCBCCHHHHHHHH
T ss_pred             CCcHHHHHHHHHH-hHhhcCCcCCCcccccccCCcCCCcccccCccccccccccccHHHhhhhccccCccCCHHHHHHHH
Confidence            3578999999976 9999985532       1112222110               011     11 1246788888877


Q ss_pred             HhCC-------------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCCC
Q 030717          119 YFGK-------------GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW  164 (172)
Q Consensus       119 ~~g~-------------~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw  164 (172)
                      .++.             ..|| |             . |+++|+ +|++||.++...+-
T Consensus        81 ~~P~~~~pg~~~d~~a~t~Mp-f-------------~-Ls~~e~-dliaYL~sl~~~~~  123 (134)
T 2bh4_X           81 TDPKPWLVEKTGDSAAKTKKT-F-------------K-LGKNQA-DVVAFLAQHSPDAG  123 (134)
T ss_dssp             HCHHHHHHHHHCCTTCCCSCC-C-------------C-CCSCHH-HHHHHHHHTCTTC-
T ss_pred             hCHHhcCCCcccCccccCCCC-C-------------C-CChHHH-HHHHHHHHcCCCCC
Confidence            6642             5677 6             5 999999 99999999876543

>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=99.16  E-value=2.5e-11  Score=101.21  Aligned_cols=79  Identities=24%  Similarity=0.431  Sum_probs=62.5

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC---CCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG---VDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCTFGA  142 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~---~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~~~~  142 (172)
                      ...+++|+++|..+|++||+.+|.+.. +    .|+|.+..   ..+.+.+.+.+.+|+ +.||+|+            .
T Consensus       129 ~~~~~~G~~lf~~~Ca~CHg~~g~g~~-g----~P~L~~~~~~~g~~~~~l~~~i~~G~~~~Mp~~~------------~  191 (311)
T 3mk7_C          129 PQAVKMGARLFANYCSICHGSDAKGSL-G----FPNLADQDWRWGGDAASIKTSILNGRIAAMPAWG------------Q  191 (311)
T ss_dssp             HHHHHHHHHHHHHHTHHHHCTTSCCBT-T----BCCSSSSCCSSCCSHHHHHHHHHHCEECCBCCCH------------H
T ss_pred             HHHHHHHHHHHhhhHHHhCCCCCCCCC-C----CCCCCCcccccCCCHHHHHHHHHhCCcCCCcccc------------c
Confidence            345789999999999999998876532 2    45565431   137899999999996 6899997            6


Q ss_pred             CCCHHHHHHHHHHHHh-hhhC
Q 030717          143 RLQDEDIKLLAQFVKS-QADQ  162 (172)
Q Consensus       143 ~Lsd~ei~~VaaYl~~-~~~~  162 (172)
                      .||++|+++|++||.+ +...
T Consensus       192 ~Ls~~ei~~laaYl~s~l~~~  212 (311)
T 3mk7_C          192 AIGEEGVKNVAAFVRKDLAGL  212 (311)
T ss_dssp             HHCHHHHHHHHHHHHHTTTCC
T ss_pred             cCCHHHHHHHHHHHHhhccCC
Confidence            7999999999999999 7543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.14  E-value=5.6e-11  Score=106.23  Aligned_cols=82  Identities=17%  Similarity=0.323  Sum_probs=61.2

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCTFGARL  144 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~~~~~L  144 (172)
                      ...+++.|++||..+|++|||.+|.+. .++.+..+.+.+.   +.+.|...|++|. +.||+|+.          ...|
T Consensus        50 ~~~~~~~G~~ly~~~Ca~CHg~~g~G~-~gp~L~~~~~~~~---~~~~l~~~i~~G~~~~Mp~~~~----------~~~L  115 (567)
T 1qks_A           50 SDAQYNEANKIYFERCAGCHGVLRKGA-TGKALTPDLTRDL---GFDYLQSFITYASPAGMPNWGT----------SGEL  115 (567)
T ss_dssp             CHHHHHHHHHHHHHHTHHHHCTTSSCS-SSCCCCHHHHHHH---CHHHHHHHHTTCCCCCCTTTSC----------CCCC
T ss_pred             CHHHHHHHHHHHhhhhHhhCCCCCCCC-CCCCCCchhhccC---CHHHHHHHHHhCCCCCCCCccc----------cCCC
Confidence            345688999999999999999887642 2333322333333   5888999999985 47999940          0479


Q ss_pred             CHHHHHHHHHHHHhhhh
Q 030717          145 QDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       145 sd~ei~~VaaYl~~~~~  161 (172)
                      |++||++|++||+++..
T Consensus       116 sd~ei~~l~~yi~~~~~  132 (567)
T 1qks_A          116 SAEQVDLMANYLLLDPA  132 (567)
T ss_dssp             CHHHHHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHHHhhccc
Confidence            99999999999998864

>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*

Probab=99.13  E-value=2.5e-11  Score=87.82  Aligned_cols=75  Identities=23%  Similarity=0.258  Sum_probs=48.8

Q ss_pred             hHHhHHHHHHccCccccCCCCC-------CCCCCCCcc---------------chhhh---c-CCCCCHHHHHHHHHhCC
Q 030717           69 DIQKGVSLFRQACIGCHDGGGN-------VIQPGATLF---------------LKDLQ---R-NGVDTEDEIYHVTYFGK  122 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~-------~~~~~~~~~---------------~p~l~---~-~~~~~~~~l~~~i~~g~  122 (172)
                      |+++|++||. +|++||..++.       +...|+.+.               .+.|.   . ...|+.+.|...|.+++
T Consensus         2 d~~~G~~~F~-~C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~g~~w~~~~L~~~l~~P~   80 (116)
T 1vyd_A            2 DAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPG   80 (116)
T ss_dssp             CHHHHHHHGG-GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHH
T ss_pred             CHHHHHHHHH-cchhhCCCCCCCCccccccCccCcccccccccccccccccccCHHHHhhcccCccCCHHHHHHHHHCHH
Confidence            6789999997 89999985421       111122211               01221   1 12578888888887763


Q ss_pred             -------------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          123 -------------GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       123 -------------~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                                   ..|| |             . |+++|. +|++||.++.
T Consensus        81 ~~~pg~~~d~~~~t~Mp-f-------------~-l~~~~~-dliaYL~sl~  115 (116)
T 1vyd_A           81 AFLKEKLDDKKAKTEMA-F-------------K-LAKGGE-DVAAYLASVV  115 (116)
T ss_dssp             HHHHHHHTCTTCCCSCC-C-------------C-CSSCHH-HHHHHHHHTC
T ss_pred             HhCCCcccCccccCCCC-C-------------C-CCCHHH-HHHHHHHHhc
Confidence                         5788 7             4 776666 9999999874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.11  E-value=6.1e-11  Score=104.85  Aligned_cols=82  Identities=21%  Similarity=0.457  Sum_probs=61.1

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCTFGARL  144 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~~~~~L  144 (172)
                      ..++++.|++||+.+|++|||.+|.+.. ++.+ .+.++..  .+.+.|...+.+|+ +.||+|+.          ...|
T Consensus        32 ~~~~~~~G~~l~~~~Ca~CHg~~g~g~~-~p~l-~~~~~~~--~~~~~l~~~i~~G~~~~Mp~~~~----------~~~l   97 (543)
T 1nir_A           32 SESEFNEAKQIYFQRCAGCHGVLRKGAT-GKPL-TPDITQQ--RGQQYLEALITYGTPLGMPNWGS----------SGEL   97 (543)
T ss_dssp             CHHHHHHHHHHHHHHTHHHHTTTTCCSS-SSCC-SHHHHHH--HCHHHHHHHHHHCCSSSCCCSTT----------TTSS
T ss_pred             ChhHHHHHHHHHhhhhHhhCCCCCCCCC-CCCC-cchhccc--CCHHHHHHHHHcCCCCCCCCccc----------ccCC
Confidence            3467889999999999999998876432 3322 2333221  25888999999997 58999941          0479


Q ss_pred             CHHHHHHHHHHHHhhhh
Q 030717          145 QDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       145 sd~ei~~VaaYl~~~~~  161 (172)
                      |++||++|++||.++..
T Consensus        98 s~~ei~~l~~yl~~~~~  114 (543)
T 1nir_A           98 SKEQITLMAKYIQHTPP  114 (543)
T ss_dssp             CHHHHHHHHHHTTSCCC
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999999998864

>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}

Probab=99.11  E-value=1.6e-10  Score=91.19  Aligned_cols=82  Identities=21%  Similarity=0.314  Sum_probs=51.7

Q ss_pred             CchhhHHhHHHHHHccCccccCCCCCCCCCCCCccc--hhhhc------CC-CCC-HHHHHHHHHhCCCCCC-CCCCCCC
Q 030717           65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFL--KDLQR------NG-VDT-EDEIYHVTYFGKGRMP-GFGEKCT  133 (172)
Q Consensus        65 a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~--p~l~~------~~-~~~-~~~l~~~i~~g~~~MP-~~~~~~~  133 (172)
                      ...+++++|++||+.+|++|||.+|.+...++.+..  ..+..      .+ .+. ...+...+   .+.|| .|.    
T Consensus        30 ~~~~~~~~G~~Ly~~~Ca~CHG~~G~G~~~~P~L~g~~~~l~~~~~~~~~g~~~~~~~~l~~~~---~~~MP~~~~----  102 (205)
T 2xts_B           30 PGSGDVATGDALFADNCASCHGDFAEGLDSWPVLAGGDGSLTDPRPVKTIGSYWPYLSTVYDYV---HRSMPFGSA----  102 (205)
T ss_dssp             SCEEEHHHHHHHHHHHTHHHHCTTSSCSTTSCCCSCCTTCTTSSSCCCCTTTTCCCHHHHHHHH---HHHCSTTSC----
T ss_pred             CChhhHHHHHHHHHhhhHHhCCCCCCCCCCCCCccCCcccccccchhhhhccccchhHHHhccC---cCCCCcccc----
Confidence            344678999999999999999988765322222211  11110      01 111 22233322   23699 775    


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717          134 PRGQCTFGARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       134 ~~~~~~~~~~Lsd~ei~~VaaYl~~~~~  161 (172)
                              ..||++||++|++||+++..
T Consensus       103 --------~~LsdeEi~aL~aYl~sl~~  122 (205)
T 2xts_B          103 --------QTLSVDDTYAITAFLLYSNG  122 (205)
T ss_dssp             --------SCCCHHHHHHHHHHHHHHTT
T ss_pred             --------cCCCHHHHHHHHHHHHhccC
Confidence                    68999999999999999854

>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}

Probab=98.65  E-value=1.4e-11  Score=104.00  Aligned_cols=78  Identities=23%  Similarity=0.476  Sum_probs=58.8

Q ss_pred             HhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC----------CCCHHHHHHHHHhCC-----CCCCCCCCCCCCC
Q 030717           71 QKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG----------VDTEDEIYHVTYFGK-----GRMPGFGEKCTPR  135 (172)
Q Consensus        71 ~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~----------~~~~~~l~~~i~~g~-----~~MP~~~~~~~~~  135 (172)
                      ++|+++|+.+|++||+.+|.+...   ...|+|.+.+          ..+.+.|.+.+++|+     ..||+|       
T Consensus       237 ~~G~~lf~~~Ca~CHg~~g~G~~~---~~gP~L~gi~~r~~~~~G~~~~~~~~L~~~I~~g~~~~~~~~MP~~-------  306 (337)
T 2yev_B          237 ERGQQVFQQNCAACHGVARSMPPA---VIGPELGLWGNRTSLGAGIVENTPENLKAWIRDPAGMKPGVKMPGF-------  306 (337)
Confidence            789999999999999987764221   1245555321          246778888888883     379998       


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhhhCCC
Q 030717          136 GQCTFGARLQDEDIKLLAQFVKSQADQGW  164 (172)
Q Consensus       136 ~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw  164 (172)
                            ..|||+|+++|++||+++..++.
T Consensus       307 ------~~LsdeEi~aL~aYL~sL~~~~~  329 (337)
T 2yev_B          307 ------PQLSEEDLDALVRYLEGLKVEGF  329 (337)
Confidence                  47999999999999999986654

>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4

Probab=99.06  E-value=1.7e-11  Score=93.48  Aligned_cols=76  Identities=16%  Similarity=0.151  Sum_probs=47.9

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHH---HHHhCCC-------CCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYH---VTYFGKG-------RMPGFGEKCTPRG  136 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~---~i~~g~~-------~MP~~~~~~~~~~  136 (172)
                      .+++++|+.|| .+|++||+.+|.+...   ...|+|.+.   +...+..   .+.+|..       .||+|.       
T Consensus         3 ~~~~~~G~~l~-~~Ca~CHg~~g~g~~~---~~~P~L~~~---~~~~~~~~l~~~~~g~r~~~~~~~~Mp~~~-------   68 (183)
T 1h1o_A            3 SADAPAPYRVS-SDCMVCHGMTGRDTLY---PIVPRLAGQ---HKSYMEAQLKAYKDHSRADQNGEIYMWPVA-------   68 (183)
T ss_dssp             ---------CG-GGTHHHHCBTTBCCSS---TTSCCCTTC---CHHHHHHHHHHHHTTCCCCHHHHHHTHHHH-------
T ss_pred             cccHHHHHHHH-hHHHHhcCCCCCCCCC---CCCCCCCCC---CHHHHHHHHHHHHcCCCCCCCcchHHHHHH-------
Confidence            35678999999 9999999988764321   125667554   3444443   4555633       599996       


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717          137 QCTFGARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       137 ~~~~~~~Lsd~ei~~VaaYl~~~~~  161 (172)
                           ..||++|+++|++||.++..
T Consensus        69 -----~~ls~~e~~al~~yl~~~~~   88 (183)
T 1h1o_A           69 -----QALDSAKITALADYFNAQKP   88 (183)
T ss_dssp             -----HTCCHHHHHHHHHHHHHCSS
T ss_pred             -----HhCCHHHHHHHHHHHHhCCC
Confidence                 67999999999999998764

>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*

Probab=99.03  E-value=1.2e-10  Score=85.01  Aligned_cols=93  Identities=14%  Similarity=0.186  Sum_probs=51.6

Q ss_pred             hhhHHhHHHHHHccCccccCCCC--------CCCCCCCCcc---------ch-------hhh---c-CCCCCHHHHHHHH
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGG--------NVIQPGATLF---------LK-------DLQ---R-NGVDTEDEIYHVT  118 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g--------~~~~~~~~~~---------~p-------~l~---~-~~~~~~~~l~~~i  118 (172)
                      .+|+++|++||+ +|++||...+        .+...|+.+.         .+       .+.   . ...|+.+.|..++
T Consensus         2 ~gd~~~G~~~F~-~C~~CH~v~~~~g~~~~g~~~~vGP~L~gv~~r~~~~~~g~~~ys~~l~~~~~~g~~w~~~~l~~~l   80 (124)
T 1cxc_A            2 EGDPEAGAKAFN-QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYV   80 (124)
T ss_dssp             CSCHHHHHHHGG-GGGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHHHHHHHTTCBCCHHHHHHHH
T ss_pred             CCCHHHHHHHHH-hhhhhcCCCCccccccccCCCCCCCCCcCccCCcccccccHHHhhHHHHhhhhcCccCCHHHHHHHH
Confidence            357899999994 8999998542        1111222221         01       110   0 1146778888888


Q ss_pred             HhCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHhhhhC
Q 030717          119 YFGKGRMPGFGEKCTP-RGQCTFGARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       119 ~~g~~~MP~~~~~~~~-~~~~~~~~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      .++...||.+...... ..+ .| ..++++|+.+|++||.++..+
T Consensus        81 ~~P~~~~pg~~~d~~a~t~M-~~-~l~~~~d~~dliaYL~sl~~~  123 (124)
T 1cxc_A           81 QDPTKFLKEYTGDAKAKGKM-TF-KLKKEADAHNIWAYLQQVAVR  123 (124)
T ss_dssp             HCHHHHHHHHHSCTTCCCSC-CC-CCCCHHHHHHHHHHHHHHCCC
T ss_pred             hChHhhCCCcccCcccCCCC-CC-ccCCHHHHHHHHHHHHHcCCC
Confidence            7664444431000000 000 01 245799999999999998644

>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*

Probab=99.03  E-value=3.3e-11  Score=92.43  Aligned_cols=67  Identities=21%  Similarity=0.391  Sum_probs=50.6

Q ss_pred             HHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHh---CC---CCCCCCCCCCCCCCCCCCCCCCCHHH
Q 030717           75 SLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYF---GK---GRMPGFGEKCTPRGQCTFGARLQDED  148 (172)
Q Consensus        75 ~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~---g~---~~MP~~~~~~~~~~~~~~~~~Lsd~e  148 (172)
                      ++|..+|++|||.+|.+....    +|.|++.   +.+.|.+.+.+   |.   ..|+++.            ..||++|
T Consensus         5 ~~~a~~C~~CHg~~G~~~~~~----~P~LaG~---~~~~i~~~l~~~~~g~~~~~~M~~~~------------~~Ls~~d   65 (174)
T 3vrd_A            5 EMLANNCAGCHGTRGNSAGPA----SPSIAQM---DPAVFVEVMEQFKSGEIQSTIMGRIA------------KGYSTAD   65 (174)
T ss_dssp             HHHHGGGHHHHCGGGCCCCSS----SCCCTTC---CHHHHHHHHHHHHHTSSCCSSHHHHH------------TTSCHHH
T ss_pred             HHHHhhHHHhCCCcCCCCCCC----CCCcCCC---CHHHHHHHHHHhhcCCccccccchhh------------ccCCHHH
Confidence            455689999999887643332    6778665   67777776654   42   2688886            7899999


Q ss_pred             HHHHHHHHHhhh
Q 030717          149 IKLLAQFVKSQA  160 (172)
Q Consensus       149 i~~VaaYl~~~~  160 (172)
                      |++|++|+.++.
T Consensus        66 i~~la~Y~~s~~   77 (174)
T 3vrd_A           66 FQKMAEYFKQQT   77 (174)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHhhhhccc
Confidence            999999999875

>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*

Probab=98.93  E-value=6e-10  Score=85.26  Aligned_cols=74  Identities=26%  Similarity=0.352  Sum_probs=52.8

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHH---HHhCC------------CCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHV---TYFGK------------GRMPGFGEKC  132 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~---i~~g~------------~~MP~~~~~~  132 (172)
                      +|+++|++| ..+|++||+.++.+...    ..|+|.+.   ....+...   +.+|.            ..||+|.   
T Consensus         2 ~~~~~G~~l-~~~C~~CHg~~g~g~~~----~~P~L~~~---~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~Mp~~~---   70 (190)
T 1m70_A            2 GDAEAGQGK-VAVCGACHGVDGNSPAP----NFPKLAGQ---GERYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGML---   70 (190)
T ss_dssp             CCHHHHHTT-CGGGHHHHCTTSCCCCT----TSCCCTTC---CHHHHHHHHHHHHHHHSTTCCTTSSCCCGGGTTTT---
T ss_pred             cchhHHHHH-HhHHHhhcCCCCCCCCC----CCCCCCCC---CHHHHHHHHHHHHcCCccccccccCCCCcchHHHH---
Confidence            468899999 68999999988765322    25677654   23333322   24442            2699986   


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717          133 TPRGQCTFGARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       133 ~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~  161 (172)
                               ..||++|+++|++||.++..
T Consensus        71 ---------~~ls~~e~~~l~~yl~~~~~   90 (190)
T 1m70_A           71 ---------DPLSDQDLEDIAAYFSSQKG   90 (190)
T ss_dssp             ---------TTCCHHHHHHHHHHHHHSCC
T ss_pred             ---------HHCCHHHHHHHHHHHHhCCC
Confidence                     68999999999999998754

>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*

Probab=98.71  E-value=3.4e-09  Score=86.38  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=61.4

Q ss_pred             ccchhhhHHHHHHHhHHHHhhh-hcccccCchhhHHhHHHHHHc-------cCccccCCC-CCCCCCCCCccchhhhcC-
Q 030717           37 ELELQKYDTYNVLCLPVSLGFF-HAAVSLAQTVDIQKGVSLFRQ-------ACIGCHDGG-GNVIQPGATLFLKDLQRN-  106 (172)
Q Consensus        37 ~~~~~~mr~l~~l~~~l~~~~~-~~a~~~a~~~d~~~G~~lf~~-------~C~~CHg~~-g~~~~~~~~~~~p~l~~~-  106 (172)
                      .+....|+-+...+..+..... ..........++++|++||..       +|++||+.+ |.+.  +.+...+.++.. 
T Consensus       125 ~l~~~~i~alaaY~~sls~~~~~~~~~~~~~~~~~~~G~~lF~~~~g~~~~~Ca~CHg~~~G~~~--g~~~l~~~~~~~~  202 (261)
T 1h32_A          125 DYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASCHEQYFDHYI--RADHLSQGQINGF  202 (261)
T ss_dssp             CTTSHHHHHHHHHHHHTTTTSBCCCCCSGGGHHHHHHHHHHHTCCBTTTTBCHHHHHTTSTTSEE--TTEECCCCCCTTC
T ss_pred             ccCHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHHHhcCCCCCcccccCCCCCCCCC--CCCcCCCCcccCC
Confidence            3455666665554444332110 001112334568899999977       699999986 4211  111111122211 


Q ss_pred             -----CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717          107 -----GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       107 -----~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~  161 (172)
                           .......+...+.++...|+...            ..||++||.+|++||.++..
T Consensus       203 p~Yr~~~g~~~tl~~ri~~~~~~m~~~~------------~~Ls~~ei~aLaaYl~sL~~  250 (261)
T 1h32_A          203 PSYRLKNARLNAVHDRFRGCIRDTRGVP------------FAVGSPEFVALELYVASRGN  250 (261)
T ss_dssp             SEEETTTTEEECHHHHHHHHHHTTTBCC------------CCTTCHHHHHHHHHHHHHTT
T ss_pred             cceeccCcchhhHHHHHHHHHhccCCCC------------CCCChHHHHHHHHHHHHhcC
Confidence                 00011223334443334788886            78999999999999999864

>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}

Probab=98.71  E-value=3.7e-09  Score=86.31  Aligned_cols=82  Identities=13%  Similarity=0.096  Sum_probs=48.9

Q ss_pred             chhhHHhHHHHHHcc-------CccccCCCCCCCCCCCCccchhhhcC------CCCCHHHHHHHHHhCCCCCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQA-------CIGCHDGGGNVIQPGATLFLKDLQRN------GVDTEDEIYHVTYFGKGRMPGFGEKC  132 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~-------C~~CHg~~g~~~~~~~~~~~p~l~~~------~~~~~~~l~~~i~~g~~~MP~~~~~~  132 (172)
                      ...++++|++||..+       |++||+.+ .+...+.+...|.+++.      .......+...+......|+.+.   
T Consensus       158 ~~~~~~~G~~lF~~~~G~~~~aCa~CHg~~-~G~~~~~~~l~~g~~~~~p~Y~~~~~~~~t~~~r~~~~~~~M~~~~---  233 (264)
T 2c1d_A          158 AAPYWEHGKEIYYTRYGQLEMSCANCHEDN-AGNMIRADHLSQGQINGFPTYRLKDSGMVTAQHRFVGCVRDTRAET---  233 (264)
T ss_dssp             GHHHHHHHHHHHHCCBTTTTBCHHHHHTTS-TTSEETTEECCCCCCTTCSEEETTTTEEECHHHHHHHHHHTTTBCC---
T ss_pred             ccHHHHHHHHHHHhhcCCCCCcccccCCCC-CCCCcCCCcCCCccccCCcchhhcccccccHHHHHHHHHhhccCCC---
Confidence            345688999999875       99999976 22111111111111110      00011122333333233699887   


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          133 TPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       133 ~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                               ..||++||++|++||.++.
T Consensus       234 ---------~~Ls~~ei~aLaaYv~sL~  252 (264)
T 2c1d_A          234 ---------FKAGSDDFKALELYVASRG  252 (264)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHT
T ss_pred             ---------CCCCHHHHHHHHHHHHHcc
Confidence                     7899999999999999986

>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*

Probab=98.68  E-value=1e-08  Score=84.28  Aligned_cols=78  Identities=17%  Similarity=0.246  Sum_probs=52.8

Q ss_pred             HHhHHHHHHc-------cCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhC----CC------CCCCCCCCC
Q 030717           70 IQKGVSLFRQ-------ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFG----KG------RMPGFGEKC  132 (172)
Q Consensus        70 ~~~G~~lf~~-------~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g----~~------~MP~~~~~~  132 (172)
                      ++.|++||..       +|++||+.+|.+...|....+|.+...+. ....|...|.++    .+      .|+++.   
T Consensus        53 v~~G~~lf~~~~g~n~~~Ca~CHg~~G~g~~~G~~a~yP~l~~~~g-~v~~L~~~I~~c~~~~~g~~~~~~~M~p~~---  128 (275)
T 3oa8_A           53 VDRGEVLWSEPRGTRNVSLETCDLGEGPGKLEGAYAHLPRYFADTG-KVMDLEQRLLWCMETIQGRDTKPLVAKPFS---  128 (275)
T ss_dssp             HHHHHHHHTCCBTTTTBCSTTCBSSSSBTCCTTTGGGCSEEETTTT-EEECHHHHHHHHHHHTTCCCCHHHHHSCSC---
T ss_pred             HHHHHHHHcCcCCCCCCcccccCCccCCCcccChhhhCcCccccCC-CHHHHHHHHHHHHHcccccccccccccccc---
Confidence            7889999975       89999997765433343333677754321 222344433332    12      378997   


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          133 TPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       133 ~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                               ..|+++|+.+|++|+.++.
T Consensus       129 ---------~~Ls~~di~~laaY~asls  147 (275)
T 3oa8_A          129 ---------GPGRTSDMEDLVAFIANKS  147 (275)
T ss_dssp             ---------BTTBCCHHHHHHHHHHHTT
T ss_pred             ---------ccCCHHHHHHHHHHHHHcC
Confidence                     6799999999999999986

>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*

Probab=98.61  E-value=1.8e-08  Score=68.14  Aligned_cols=61  Identities=20%  Similarity=0.261  Sum_probs=42.0

Q ss_pred             HhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCC-CCCCCCCCCCCCCCCCCCCHHHH
Q 030717           71 QKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMP-GFGEKCTPRGQCTFGARLQDEDI  149 (172)
Q Consensus        71 ~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP-~~~~~~~~~~~~~~~~~Lsd~ei  149 (172)
                      ..|+++|..+|.+||+.+.....+.            ..+.+.+...+.    .|+ .|+            ..||++|+
T Consensus        19 ~~G~~l~~~~C~~CH~~~~i~~~p~------------~~~~~~W~~~v~----~M~~~~g------------~~ls~~e~   70 (81)
T 2blf_B           19 QPGFEAAQNNCAACHSVDYINTQPP------------GKGQAFWDAEVQ----KMIKVYH------------APVDEADA   70 (81)
T ss_dssp             STHHHHHHHHTTSSSCTHHHHTSCT------------TCCHHHHHHHHH----HHHHTSC------------CCCCHHHH
T ss_pred             cchHHHHHHHHHHhcCCcccccCcC------------cCCHHHHHHHHH----HHHHHcC------------CCCCHHHH
Confidence            4799999999999998542110000            114555555553    466 565            67999999


Q ss_pred             HHHHHHHHhh
Q 030717          150 KLLAQFVKSQ  159 (172)
Q Consensus       150 ~~VaaYl~~~  159 (172)
                      ++|++||.+.
T Consensus        71 ~~I~~YL~~~   80 (81)
T 2blf_B           71 KAIADYLAKT   80 (81)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999763

>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}

Probab=98.57  E-value=1.7e-08  Score=70.22  Aligned_cols=65  Identities=17%  Similarity=0.303  Sum_probs=42.2

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhh-cC-CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQ-RN-GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQ  145 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~-~~-~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Ls  145 (172)
                      .++..|++||+++|.+||+.++.         .+.+. .+ ....-+.+.+.+    ..||+-              .+|
T Consensus        25 ~~~~~g~~l~~~kC~~CHs~d~v---------~~~~~~~~~~~e~w~~iv~~M----~~mpg~--------------~Is   77 (92)
T 3a9f_A           25 FDFDAAKKLVDVRCNKCHTLDSV---------ADLFRTKYKKTGQVNLIVKRM----QGFPGS--------------GIS   77 (92)
T ss_dssp             CCHHHHHHHHHHHSSSSSCSGGG---------HHHHHHHTTTTTCHHHHHHHH----HHSTTC--------------CCC
T ss_pred             cChHhHHHHHHhHHHHhcCCccc---------ccccccccccHHHHHHHHHHH----HhCCCC--------------CCC
Confidence            36788999999999999986531         22221 11 111222233322    358764              599


Q ss_pred             HHHHHHHHHHHHhh
Q 030717          146 DEDIKLLAQFVKSQ  159 (172)
Q Consensus       146 d~ei~~VaaYl~~~  159 (172)
                      ++|+..|+.||...
T Consensus        78 ~eda~~Iv~YLa~~   91 (92)
T 3a9f_A           78 DDDAKTIGIWLHEK   91 (92)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999864

>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*

Probab=98.50  E-value=1.2e-08  Score=83.93  Aligned_cols=105  Identities=17%  Similarity=0.171  Sum_probs=61.4

Q ss_pred             cchhhhHHHHHHHhHHHHhhhhcc--cccCchhhHHhHHHHH-------HccCccccCCCCCCCCCCCCccchhhhcC--
Q 030717           38 LELQKYDTYNVLCLPVSLGFFHAA--VSLAQTVDIQKGVSLF-------RQACIGCHDGGGNVIQPGATLFLKDLQRN--  106 (172)
Q Consensus        38 ~~~~~mr~l~~l~~~l~~~~~~~a--~~~a~~~d~~~G~~lf-------~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--  106 (172)
                      ++...|+-+...+..+........  ........+++|++||       ..+|++|||.+|.+....   .+|.|.+.  
T Consensus       131 Ls~~di~~laaY~asls~g~p~~~~~~~~~~~~~~~~G~~lf~~r~G~~~~~Ca~CHg~~G~g~~~~---~~P~L~g~~q  207 (275)
T 3oa8_A          131 GRTSDMEDLVAFIANKSDGVKIKVALATPQEKEMYAIGEALFFRRSSINDFSCSTCHGAAGKRIRLQ---ALPQLDVPGK  207 (275)
T ss_dssp             TBCCHHHHHHHHHHHTTTTCBCCCCCCSHHHHHHHHHHHHHHHCCBTTTTBCHHHHHSSSSCEETTE---ECCCCSSSSH
T ss_pred             CCHHHHHHHHHHHHHcCcCCCCCcccCCcccHHHHHHHHHHHHhccCCCCCchHhhCCCcCCCCCcc---CCCccccccc
Confidence            366777766655544432110000  0111234678999999       468999999887753221   13444321  


Q ss_pred             ------C-----------CCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          107 ------G-----------VDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       107 ------~-----------~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                            +           .++...   .+.+....|+...            ..|+++||.+|++||.++.
T Consensus       208 g~~~~~gq~p~Y~~~q~~~~~~~~---R~~~c~~~M~~~a------------~~l~~~ei~ALa~Yl~~ls  263 (275)
T 3oa8_A          208 DAQLTMATWPTYRVSQSALRTMQH---RMWDCYRQMRMPA------------PDYASEAVTALTLYLTKQA  263 (275)
T ss_dssp             HHHHHHTTCSEEEGGGTEEECHHH---HHHHHHHHTTCCC------------CCTTCHHHHHHHHHHHHHT
T ss_pred             ccccccccCHHHHHHHhhhhhhhh---cccchhhhhccCC------------CCCChHHHHHHHHHHHHhC
Confidence                  1           112222   2221123688887            7899999999999999885

>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*

Probab=98.20  E-value=2.9e-07  Score=80.34  Aligned_cols=66  Identities=24%  Similarity=0.486  Sum_probs=46.0

Q ss_pred             HhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCC-CCCCCCCCCCCCCCCCCCCHHHH
Q 030717           71 QKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMP-GFGEKCTPRGQCTFGARLQDEDI  149 (172)
Q Consensus        71 ~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP-~~~~~~~~~~~~~~~~~Lsd~ei  149 (172)
                      +.|++||..+|++||+.++.+...       .+.... .+.+.+...+.    .|| .++            ..||++|+
T Consensus         2 a~Gk~LF~~NCAaCHGagaqG~~~-------~Is~qr-~S~e~Wq~tV~----RMp~a~G------------a~LSdEEI   57 (494)
T 1jmx_A            2 EQGPSLLQNKCMGCHIPEGNDTYS-------RISHQR-KTPEGWLMSIA----RMQVMHG------------LQISDDDR   57 (494)
T ss_dssp             CCHHHHHHHHHBTTBCEEETTEET-------TGGGCE-ECHHHHHHHHH----HHHHHHC------------CCCCHHHH
T ss_pred             chhhHHHhhhhhhhcCCCccCccc-------cccccC-CCHHHHHHHHH----hhhhhhc------------CCCCHHHH
Confidence            369999999999999976553211       111111 24565555554    388 665            67999999


Q ss_pred             HHHHHHHHhhh
Q 030717          150 KLLAQFVKSQA  160 (172)
Q Consensus       150 ~~VaaYl~~~~  160 (172)
                      ++|++||.+..
T Consensus        58 ~aVAaYLasls   68 (494)
T 1jmx_A           58 RTLVKYLADKQ   68 (494)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99999998875

>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}

Probab=98.09  E-value=7.9e-06  Score=68.58  Aligned_cols=21  Identities=19%  Similarity=0.442  Sum_probs=18.8

Q ss_pred             CCCCHHHHHHHHHHHHhhhhC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      ..||++|+++|++||+++.+.
T Consensus       285 ~~Ls~~E~~~LvaFL~tLt~~  305 (328)
T 1zzh_A          285 ATLDDTQVDQITAFLGTLTGE  305 (328)
T ss_dssp             CCCCHHHHHHHHHHHGGGCCC
T ss_pred             CCCCHHHHHHHHHHHHHcCCC
Confidence            579999999999999998654

>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}

Probab=98.04  E-value=6.3e-07  Score=72.99  Aligned_cols=77  Identities=16%  Similarity=0.297  Sum_probs=46.4

Q ss_pred             hhHHhHHHHHHc-------cCccccCCCCCCCCCCCCccchhhhcC-C-CCCHHHHHHHHHhCC-CCCCCCCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQ-------ACIGCHDGGGNVIQPGATLFLKDLQRN-G-VDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQ  137 (172)
Q Consensus        68 ~d~~~G~~lf~~-------~C~~CHg~~g~~~~~~~~~~~p~l~~~-~-~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~  137 (172)
                      ..++.|++||..       +|++|||.++  ...+....+|.+... + ..+.+.   .+..+. ..|....        
T Consensus        60 ~~v~~G~~LF~~~~~~~~~sCasCHG~~g--~~~g~~~~~p~~~~~~G~~~~l~~---ri~~~~~~~M~~~~--------  126 (264)
T 2c1d_A           60 VFVDRGLDKWNAAMGVNGESCASCHQGPE--SMAGLRAVMPRVDEHTGKLMIMED---YVNACVTERMGLEK--------  126 (264)
T ss_dssp             HHHHHHHHHHHSCCSTTSCCHHHHHCSGG--GGTTTGGGCSEECTTTCCEECHHH---HHHHHHHHHHCCCC--------
T ss_pred             HHHHHHHHHHcCCCCCCCcChhhcCCCCC--cccchhhhhhhhhhhcCCccCHHH---HHHHHHhcccCCCC--------
Confidence            347899999988       9999997653  111221123333211 1 223332   222221 1366654        


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhh
Q 030717          138 CTFGARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       138 ~~~~~~Lsd~ei~~VaaYl~~~~~  161 (172)
                          ..|+++|+.+|++|+.++..
T Consensus       127 ----~~l~~~~~~alaaY~~sls~  146 (264)
T 2c1d_A          127 ----WGVTSDNMKDMLSLISLQSR  146 (264)
T ss_dssp             ----CCTTSHHHHHHHHHHHHTTT
T ss_pred             ----ccccHHHHHHHHHHHHHHhc
Confidence                46899999999999999864

>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*

Probab=97.99  E-value=1.3e-06  Score=63.58  Aligned_cols=82  Identities=15%  Similarity=0.289  Sum_probs=45.6

Q ss_pred             chhhHHhHHHHHH----------ccCccccCCCCCCCC----CCC--CccchhhhcCCCCCHHHHHH-HHHhCCCCCCCC
Q 030717           66 QTVDIQKGVSLFR----------QACIGCHDGGGNVIQ----PGA--TLFLKDLQRNGVDTEDEIYH-VTYFGKGRMPGF  128 (172)
Q Consensus        66 ~~~d~~~G~~lf~----------~~C~~CHg~~g~~~~----~~~--~~~~p~l~~~~~~~~~~l~~-~i~~g~~~MP~~  128 (172)
                      ...++++|++||.          ..|++||+.+-...+    .+.  .+..|..-...+.+...+.+ ..++-..+   +
T Consensus        24 ~~~~A~rGkalf~~~~~~~~g~~~sCaSCH~~~~t~~G~h~~Tgk~I~PlAp~~n~~Rftd~akVekwf~rnCn~v---l  100 (124)
T 1e8e_A           24 EAPSITDGKIFFNRKFKTPSGKEAACASCHTNNPANVGKNIVTGKEIPPLAPRVNTKRFTDIDKVEDEFTKHCNDI---L  100 (124)
T ss_dssp             CCCCSSSTTGGGTCCEEETTTEEECTTTTSCSCTTSCBCCTTTCCCBCCCCTTTSTTSSCCSTTHHHHHHHHHHHH---T
T ss_pred             chhhHHHHHHHHhccccccCCCCCcccccCCCCCCcCcccccCcccccccccccCccccCCHHHHHHHHHHHhHHH---H
Confidence            3456789999993          589999996532211    111  11111111112223333222 22222222   3


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhC
Q 030717          129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       129 ~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      +            ..+|++|..||++||.+++.+
T Consensus       101 g------------r~cTa~EK~D~~ayL~s~~~~  122 (124)
T 1e8e_A          101 G------------ADCSPSEKANFIAYLLTETKP  122 (124)
T ss_dssp             S------------SCCCHHHHHHHHHHHTTCCCC
T ss_pred             c------------cCCCHHHHHHHHHHHHHcCCC
Confidence            3            679999999999999998654

>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*

Probab=97.97  E-value=4.7e-06  Score=72.56  Aligned_cols=65  Identities=20%  Similarity=0.302  Sum_probs=44.7

Q ss_pred             hHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHH
Q 030717           72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMP-GFGEKCTPRGQCTFGARLQDEDIK  150 (172)
Q Consensus        72 ~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP-~~~~~~~~~~~~~~~~~Lsd~ei~  150 (172)
                      .|++||+.+|++||+.+..+...+.     ...+   .+.+.+...+.    .|+ .++            ..+|++|+.
T Consensus         2 ~GkeLv~anCasCHsad~~G~~~rI-----s~q~---~t~e~Wq~tV~----RM~~~~G------------a~ISdEE~~   57 (489)
T 1pby_A            2 TGEEVLQNACAACHVQHEDGRWERI-----DAAR---KTPEGWDMTVT----RMMRNHG------------VALEPEERA   57 (489)
T ss_dssp             CHHHHHHHTGGGTSCBCTTSCBTTG-----GGEE---ECHHHHHHHHH----HHHHHSC------------CCCCHHHHH
T ss_pred             ChHHHHHhhhHhhcCCCcccccccc-----ccCc---CCHHHHHHHHH----hhhhhcC------------CCCCHHHHH
Confidence            4899999999999997765322221     2212   25666666554    366 333            579999999


Q ss_pred             HHHHHHHhhh
Q 030717          151 LLAQFVKSQA  160 (172)
Q Consensus       151 ~VaaYl~~~~  160 (172)
                      .|++||....
T Consensus        58 aIaaYLAa~y   67 (489)
T 1pby_A           58 AIVRHLSDTR   67 (489)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhc
Confidence            9999996553

>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5

Probab=97.95  E-value=6.2e-06  Score=68.63  Aligned_cols=21  Identities=10%  Similarity=0.409  Sum_probs=18.7

Q ss_pred             CCCCHHHHHHHHHHHHhhhhC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      ..||++|+.+|++||+++.++
T Consensus       265 ~~Ls~~e~~~LvaFL~sLt~~  285 (308)
T 1iqc_A          265 REFNKDEVSKIVAFLKTLTGD  285 (308)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHcCCC
Confidence            579999999999999998754

>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*

Probab=97.92  E-value=8.8e-06  Score=68.17  Aligned_cols=21  Identities=19%  Similarity=0.450  Sum_probs=18.7

Q ss_pred             CCCCHHHHHHHHHHHHhhhhC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      ..||++|+++|++||+++.+.
T Consensus       282 ~~Ls~~E~~~LvaFL~tLt~~  302 (323)
T 2vhd_A          282 KQLAPDDVENIVAFLHSLSGK  302 (323)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCC
T ss_pred             CCCCHHHHHHHHHHHHHcCCC
Confidence            579999999999999998754

>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}

Probab=97.88  E-value=8e-06  Score=68.41  Aligned_cols=21  Identities=19%  Similarity=0.449  Sum_probs=18.6

Q ss_pred             CCCCHHHHHHHHHHHHhhhhC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      ..||++|+.+|++||+++.++
T Consensus       273 ~~Ls~~E~~~LvaFL~sLt~~  293 (320)
T 3o5c_A          273 QKLTEKETKEMVAFLNSLTGE  293 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHcCCC
Confidence            679999999999999999543

>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*

Probab=97.84  E-value=7.6e-06  Score=58.59  Aligned_cols=79  Identities=14%  Similarity=0.205  Sum_probs=48.1

Q ss_pred             hhhHHhHHHHHH----------ccCccccCCCCCCC---CCCCC--ccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFR----------QACIGCHDGGGNVI---QPGAT--LFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEK  131 (172)
Q Consensus        67 ~~d~~~G~~lf~----------~~C~~CHg~~g~~~---~~~~~--~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~  131 (172)
                      ..++++|++||.          ..|++||+.+....   ..|..  +..|..-...+.+.+.+.+....-.+  --++  
T Consensus        19 ~~~a~RG~alf~~~~~~~~g~~pSCaSCHg~~p~~~g~~~tgk~I~p~Ap~~np~RftD~akvekwf~rnc~--~v~g--   94 (112)
T 1dw0_A           19 PADAERGRALFLSTQTGGKPDTPSCTTCHGADVTRAGQTRTGKEIAPLAPSATPDRFTDSARVEKWLGRNCN--SVIG--   94 (112)
T ss_dssp             CCCHHHHHHHHHCCCSSSCTTCCSTHHHHCSSTTSCEECTTSCEECCSSTTTSTTTTCCHHHHHHHHHHHHH--HHHS--
T ss_pred             cccHHHHHHHHhhhcccCCCCCCcccccCCCCcccCcccccCCcccCcCCccCccccCCHHHHHHHHHhhhh--HHHc--
Confidence            357899999992          37999999775431   11211  11233222345566666665432211  1133  


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          132 CTPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       132 ~~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                                ...|.+|-.|+++||.++
T Consensus        95 ----------r~cta~EK~d~l~~l~~~  112 (112)
T 1dw0_A           95 ----------RDCTPGEKADLLAWLAAQ  112 (112)
T ss_dssp             ----------SCCCHHHHHHHHHHHHTC
T ss_pred             ----------ccCCHHHHHHHHHHHHhC
Confidence                      678999999999999874

>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*

Probab=97.81  E-value=9.2e-07  Score=71.91  Aligned_cols=78  Identities=17%  Similarity=0.266  Sum_probs=46.9

Q ss_pred             hhHHhHHHHHHc-------cCccccCCCCCCCCCCCCccchhhhcC-C-CCCHHHHHHHHHhCC-CCCCCCCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQ-------ACIGCHDGGGNVIQPGATLFLKDLQRN-G-VDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQ  137 (172)
Q Consensus        68 ~d~~~G~~lf~~-------~C~~CHg~~g~~~~~~~~~~~p~l~~~-~-~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~  137 (172)
                      ..++.|++||..       +|++||+.++. ...+....+|.+... + ..+.+.   .+..+. ..|+...        
T Consensus        56 ~~v~~G~~LF~~~~~~~~~sCasCHg~~~~-~~~g~~~~~p~~~~~~G~~~~le~---~i~~~~~~~M~~~~--------  123 (261)
T 1h32_A           56 VFVEEARAVWDRPEGTEGKACADCHGAVDD-GMYGLRAVYPKYVESAGKVRTVEQ---MINACRTSRMGAPE--------  123 (261)
T ss_dssp             HHHHHHHHHHTSCCSTTCCCHHHHHCSHHH-HTTTHHHHCSEEETTTTEEECHHH---HHHHHHHHTTCCCC--------
T ss_pred             HHHHHHHHHHcCCCCCCCcChhHhCcCCCc-cccchhhhhhhhhhhcCCcccHHH---HHHHHHhcccCCCC--------
Confidence            457899999988       99999975421 011111123444321 1 223332   222221 2477654        


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhh
Q 030717          138 CTFGARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       138 ~~~~~~Lsd~ei~~VaaYl~~~~~  161 (172)
                          ..|+++|+.+|++|+.++..
T Consensus       124 ----~~l~~~~i~alaaY~~sls~  143 (261)
T 1h32_A          124 ----WDYIGPDMTAMVALIASVSR  143 (261)
T ss_dssp             ----CCTTSHHHHHHHHHHHHTTT
T ss_pred             ----cccCHHHHHHHHHHHHHHhc
Confidence                46899999999999999864

>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*

Probab=97.78  E-value=4.7e-05  Score=64.14  Aligned_cols=21  Identities=14%  Similarity=0.349  Sum_probs=18.5

Q ss_pred             CCCCHHHHHHHHHHHHhhhhC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      ..||++|+++|++||.++.+.
T Consensus       296 ~~Ls~~E~~~LvaFL~sLt~~  316 (338)
T 2c1v_A          296 TELTDQQAEDITAFLGTLTGE  316 (338)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCC
T ss_pred             CCCCHHHHHHHHHHHHHcCCC
Confidence            469999999999999998653

>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=97.74  E-value=6.9e-06  Score=64.35  Aligned_cols=62  Identities=26%  Similarity=0.353  Sum_probs=40.1

Q ss_pred             hhHHhHHHHH-HccCccccC--CCCCCC--------------------CCCCCccchhhhcCC-CCCHHHHHHHHHhC--
Q 030717           68 VDIQKGVSLF-RQACIGCHD--GGGNVI--------------------QPGATLFLKDLQRNG-VDTEDEIYHVTYFG--  121 (172)
Q Consensus        68 ~d~~~G~~lf-~~~C~~CHg--~~g~~~--------------------~~~~~~~~p~l~~~~-~~~~~~l~~~i~~g--  121 (172)
                      ....+|++|| +..|..||.  ..+...                    --|.....|+|.+.+ ..+.+++...+.++  
T Consensus        51 ~~~~~Gr~iy~~eGC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~p~l~Gsgr~GPDLt~vG~R~s~~wl~~~I~dPq~  130 (203)
T 3mk7_B           51 ALQLEGRDLYIREGCVGCHSQMIRPFRAETERYGHYSVAGESVYDHPFLWGSKRTGPDLARVGGRYSDDWHRAHLYNPRN  130 (203)
T ss_dssp             HHHHHHHHHHHHHTGGGTCCCCCCSSHHHHHHHSSCCCGGGGTTCSSCCCCSBCSSCCCTTCTTTSCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHCChhhccCCCCCCCchhhhcccccccchhhhhccccccCCCCCCcChhhhhccCCHHHHHHHHhCccc
Confidence            4467899999 567999998  332110                    001122356776654 45788888888776  


Q ss_pred             ---CCCCCCCC
Q 030717          122 ---KGRMPGFG  129 (172)
Q Consensus       122 ---~~~MP~~~  129 (172)
                         ...||+|.
T Consensus       131 v~PGS~MPay~  141 (203)
T 3mk7_B          131 VVPESKMPSYP  141 (203)
T ss_dssp             HSTTCCCCCCT
T ss_pred             cCCCCCCCCCc
Confidence               34899995

>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*

Probab=97.69  E-value=7.5e-05  Score=62.53  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=19.1

Q ss_pred             CCCCHHHHHHHHHHHHhhhhCC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQG  163 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~g  163 (172)
                      ..||++|+++|++||.++.+..
T Consensus       282 ~~Ls~~e~~~LvAFL~sLt~~~  303 (326)
T 1nml_A          282 TELNNDEVKSIVAFLKTLTGNV  303 (326)
T ss_dssp             CCCCHHHHHHHHHHHGGGCCCC
T ss_pred             CCCCHHHHHHHHHHHHHcCCCC
Confidence            5799999999999999997543

>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*

Probab=97.58  E-value=0.00018  Score=60.76  Aligned_cols=21  Identities=24%  Similarity=0.476  Sum_probs=18.9

Q ss_pred             CCCCHHHHHHHHHHHHhhhhC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      ..||++|+.+|++||+++.++
T Consensus       304 ~~Ls~~E~~~LvaFL~sLt~~  324 (345)
T 3hq9_A          304 IKLSDDESEAIAAFLGSLTGK  324 (345)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhCCC
Confidence            689999999999999999654

>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*

Probab=97.33  E-value=0.00031  Score=59.23  Aligned_cols=21  Identities=14%  Similarity=0.346  Sum_probs=18.6

Q ss_pred             CCCCHHHHHHHHHHHHhhhhC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      -.||++|+++|++||.++.++
T Consensus       299 ~~Lt~~E~~~LvAFL~tLtd~  319 (341)
T 4aan_A          299 ISITDADADKIVTFLNTLTGA  319 (341)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCC
T ss_pred             CCCCHHHHHHHHHHHHccCCC
Confidence            469999999999999999754

>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*

Probab=97.24  E-value=0.0013  Score=53.14  Aligned_cols=23  Identities=26%  Similarity=0.774  Sum_probs=19.7

Q ss_pred             chhhHHhHHHHHHccCccccCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGG   88 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~   88 (172)
                      ..+.+++|.++|.++|++||+..
T Consensus        25 D~aslqRG~qvy~~~CaaCHsl~   47 (248)
T 3cx5_D           25 DHASIRRGYQVYREVCAACHSLD   47 (248)
T ss_dssp             CHHHHHHHHHHHHHTGGGTCCCT
T ss_pred             chHhHhhhHHHHHHhhhhccCcc
Confidence            34568999999999999999965

>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*

Probab=97.11  E-value=0.00099  Score=56.78  Aligned_cols=27  Identities=19%  Similarity=0.379  Sum_probs=22.2

Q ss_pred             CCCCHHHHHHHHHHHHhhhhCCCCCcC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQGWPKIE  168 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~gw~~~~  168 (172)
                      ..||++|+++|++||.++.+.....+-
T Consensus       332 ~~Lt~~E~~dLVAFLkTLTd~~~~~l~  358 (373)
T 3sjl_A          332 LMLDDGRVDALVAFLETLTDRRYEPLL  358 (373)
T ss_dssp             CCCCHHHHHHHHHHHHTTSCGGGGGGG
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCccccc
Confidence            579999999999999999766555443

>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}

Probab=96.99  E-value=0.0027  Score=51.60  Aligned_cols=21  Identities=24%  Similarity=0.740  Sum_probs=18.5

Q ss_pred             hhHHhHHHHHHccCccccCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGG   88 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~   88 (172)
                      +.+++|.++|.++|++||+..
T Consensus        45 aslqRG~qVy~evCaaCHsl~   65 (263)
T 2yiu_B           45 HQLQRGLQVYTEVCSACHGLR   65 (263)
T ss_dssp             HHHHHHHHHHHHTGGGTCCCT
T ss_pred             HHHHHHHHHHHHHhhccCCcc
Confidence            458999999999999999954

>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...

Probab=96.92  E-value=0.0023  Score=51.36  Aligned_cols=23  Identities=26%  Similarity=0.772  Sum_probs=19.6

Q ss_pred             chhhHHhHHHHHHccCccccCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGG   88 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~   88 (172)
                      ..+.+++|.++|.++|++||+..
T Consensus        22 D~~slqRG~qvy~~~CaaCHSl~   44 (241)
T 1pp9_D           22 DHTSIRRGFQVYKQVCSSCHSMD   44 (241)
T ss_dssp             CHHHHHHHHHHHHHTGGGTCCCT
T ss_pred             chHHHhhhHHHHHHhhhhccCcc
Confidence            34568999999999999999964

>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport; HET: HEM; 2.00A {Rhodobacter sphaeroides}

Probab=95.36  E-value=0.014  Score=43.15  Aligned_cols=58  Identities=22%  Similarity=0.352  Sum_probs=39.8

Q ss_pred             HHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHH
Q 030717           73 GVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG-FGEKCTPRGQCTFGARLQDEDIKL  151 (172)
Q Consensus        73 G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~-~~~~~~~~~~~~~~~~Lsd~ei~~  151 (172)
                      ++++|..+|++||..-           .|.+     .+.+.+..++.    .|.. |+.          .-.|++++...
T Consensus        16 ~~~~y~~~C~~CH~a~-----------pp~~-----lpansW~~il~----~m~~HfG~----------~a~Ld~~~~~~   65 (139)
T 2fw5_A           16 TDPLTRTECSACHMAY-----------PAAL-----LPARSWTALMA----DLPNHFGE----------DASLDEASRGQ   65 (139)
T ss_dssp             CCHHHHHHTTSSSCCC-----------CGGG-----SCHHHHHHHHT----CGGGBTTB----------CCCCCHHHHHH
T ss_pred             cHHHHHHHHHhccCCC-----------Cccc-----CCHHHHHHHHH----HHHHhccc----------ccCCCHHHHHH
Confidence            4678999999999721           1112     15777777773    4552 220          13599999999


Q ss_pred             HHHHHHhhh
Q 030717          152 LAQFVKSQA  160 (172)
Q Consensus       152 VaaYl~~~~  160 (172)
                      |.+||..-+
T Consensus        66 I~~YLq~~A   74 (139)
T 2fw5_A           66 IESYLVANA   74 (139)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHcc
Confidence            999998775

>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}

Probab=95.25  E-value=0.026  Score=40.88  Aligned_cols=58  Identities=22%  Similarity=0.356  Sum_probs=39.6

Q ss_pred             HHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHH
Q 030717           74 VSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG-FGEKCTPRGQCTFGARLQDEDIKLL  152 (172)
Q Consensus        74 ~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~-~~~~~~~~~~~~~~~~Lsd~ei~~V  152 (172)
                      +++|..+|++||..-           .|.+     .+.+.+..++.    .|.. |+.          .-.|++++...|
T Consensus         6 ~~~y~~~C~~CH~a~-----------pp~~-----lpa~sW~~il~----~m~~HfG~----------~a~Ld~~~~~~I   55 (125)
T 2fwt_A            6 DPLTRTECSACHMAY-----------PAAL-----LPARSWTALMA----DLPNHFGE----------DASLDEASRGQI   55 (125)
T ss_dssp             CHHHHHHTSSSSCCC-----------CGGG-----SCHHHHHHHHT----TGGGBTTB----------CCCCCHHHHHHH
T ss_pred             HHHHHHHHHhccCCC-----------Cccc-----CCHHHHHHHHH----HHHHhccc----------ccCCCHHHHHHH
Confidence            578999999999721           1111     15777777773    4552 221          135999999999


Q ss_pred             HHHHHhhhh
Q 030717          153 AQFVKSQAD  161 (172)
Q Consensus       153 aaYl~~~~~  161 (172)
                      .+||..-+.
T Consensus        56 ~~YLq~~A~   64 (125)
T 2fwt_A           56 ESYLVANAA   64 (125)
T ss_dssp             HHHHHHTST
T ss_pred             HHHHHHhcc
Confidence            999987764

>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}

Probab=95.24  E-value=0.0076  Score=48.81  Aligned_cols=23  Identities=17%  Similarity=0.696  Sum_probs=19.5

Q ss_pred             chhhHHhHHHHHHccCccccCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGG   88 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~   88 (172)
                      ..+.+++|.++|.+.|++||+..
T Consensus        19 D~asLqRG~qvy~evCa~CHsl~   41 (258)
T 1zrt_D           19 DQAQLRRGFQVYNEVCSACHGMK   41 (258)
T ss_dssp             CHHHHHHHHHHHHHTTTTTCCCT
T ss_pred             CHHHHHHHHHHHHHHHhhcCCch
Confidence            34568999999999999999954

>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*

Probab=95.04  E-value=0.0095  Score=48.49  Aligned_cols=23  Identities=22%  Similarity=0.715  Sum_probs=19.6

Q ss_pred             chhhHHhHHHHHHccCccccCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGG   88 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~   88 (172)
                      ..+.+++|.++|.+.|++||+..
T Consensus        21 D~asLqRG~qVy~evCaaCHsl~   43 (269)
T 2qjy_B           21 DQHQLQRGLQVYTEVCAACHGMK   43 (269)
T ss_dssp             CHHHHHHHHHHHHHTGGGTCCCT
T ss_pred             CHHHHHHHHHHHHHHHhhcCCch
Confidence            34568999999999999999954

>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*

Probab=94.72  E-value=0.004  Score=54.48  Aligned_cols=24  Identities=17%  Similarity=0.371  Sum_probs=19.7

Q ss_pred             hhhHHhHHHHHHccCccccCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGN   90 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~   90 (172)
                      ..++++|++||..+|++||+.++.
T Consensus        86 ~~~va~G~eLF~~NCAaCHG~dGk  109 (494)
T 1jmx_A           86 LNTVEQFDTQLSETCGRCHSGARV  109 (494)
T ss_dssp             TTCCCCCCHHHHHHHSSSSCSHHH
T ss_pred             cchhhhHHHHHhhhhhhcCCcccC
Confidence            345778999999999999997654

>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5

Probab=94.04  E-value=0.17  Score=41.72  Aligned_cols=18  Identities=22%  Similarity=0.291  Sum_probs=14.9

Q ss_pred             CC-HHHHHHHHHHHHhhhh
Q 030717          144 LQ-DEDIKLLAQFVKSQAD  161 (172)
Q Consensus       144 Ls-d~ei~~VaaYl~~~~~  161 (172)
                      ++ ++++.+|++|++++..
T Consensus       133 ~~~~~~~~Aia~y~~tl~~  151 (308)
T 1iqc_A          133 VTIDRITTAIAQFEETLVT  151 (308)
T ss_dssp             CCHHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHhhhCC
Confidence            44 8899999999998753

>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*

Probab=93.39  E-value=0.11  Score=43.57  Aligned_cols=19  Identities=16%  Similarity=0.158  Sum_probs=15.4

Q ss_pred             CCC-HHHHHHHHHHHHhhhh
Q 030717          143 RLQ-DEDIKLLAQFVKSQAD  161 (172)
Q Consensus       143 ~Ls-d~ei~~VaaYl~~~~~  161 (172)
                      .++ ++++.+|++|++++..
T Consensus       160 ~it~~~~~~Aia~y~~sL~~  179 (338)
T 2c1v_A          160 PVTFDNFAAAIEQFEATLIT  179 (338)
T ss_dssp             CSCHHHHHHHHHHHHHTCCC
T ss_pred             CcCHHHHHHHHHHHHHHhcC
Confidence            455 7788999999998864

>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*

Probab=92.45  E-value=0.13  Score=42.72  Aligned_cols=20  Identities=5%  Similarity=0.079  Sum_probs=15.2

Q ss_pred             CCCC-HHHHHHHHHHHHhhhh
Q 030717          142 ARLQ-DEDIKLLAQFVKSQAD  161 (172)
Q Consensus       142 ~~Ls-d~ei~~VaaYl~~~~~  161 (172)
                      ..+| ++++.+|++|++++..
T Consensus       145 ~~it~~~~~~Aia~y~~sl~~  165 (323)
T 2vhd_A          145 KPVSFDNMALAIEAYEATLVT  165 (323)
T ss_dssp             SCSSHHHHHHHHHHHHTTCCC
T ss_pred             CCCCHHHHHHHHHHHHhhcCC
Confidence            3567 5557999999998754

>3u99_A Diheme cytochrome C; cytochrome C fold, electron transfer protein, electron trans diheme protein, bacterium shewanella baltica OS155; HET: HEC; 1.15A {Shewanella baltica}

Probab=91.70  E-value=0.26  Score=36.53  Aligned_cols=57  Identities=19%  Similarity=0.268  Sum_probs=36.6

Q ss_pred             HHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 030717           75 SLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQ  154 (172)
Q Consensus        75 ~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~Vaa  154 (172)
                      ..|...|++||-.-           .|.|     -..+.+.+++.+-.+.   |+          -...|++++...|.+
T Consensus        13 ~~Y~~eCgsCH~Ay-----------pP~l-----LPa~SW~~im~~L~~H---FG----------~dasLd~~~~~~I~~   63 (148)
T 3u99_A           13 AEYTAECGSCHMAY-----------PANL-----LPADKWRAITANLENH---FG----------DNASLDPQVTARIEE   63 (148)
T ss_dssp             HHHHHHHSSSSCCC-----------CGGG-----SBHHHHHHHHTTTTSB---TT----------BCCCCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCccc-----------Cccc-----CCHHHHHHHHHhHHHh---cC----------CCcCCCHHHHHHHHH
Confidence            35888999999621           1222     1466667766432222   22          125799999999999


Q ss_pred             HHHhhh
Q 030717          155 FVKSQA  160 (172)
Q Consensus       155 Yl~~~~  160 (172)
                      ||...+
T Consensus        64 yL~~na   69 (148)
T 3u99_A           64 YLVQHA   69 (148)
T ss_dssp             HHHHTS
T ss_pred             HHHHcc
Confidence            998765

>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}

Probab=89.81  E-value=0.84  Score=37.85  Aligned_cols=18  Identities=17%  Similarity=0.361  Sum_probs=14.7

Q ss_pred             CCCHHHH-HHHHHHHHhhh
Q 030717          143 RLQDEDI-KLLAQFVKSQA  160 (172)
Q Consensus       143 ~Lsd~ei-~~VaaYl~~~~  160 (172)
                      .++.++| ++|++|++++.
T Consensus       140 ~it~~~i~~Aiaaf~rtL~  158 (320)
T 3o5c_A          140 KVDIDRLTDAIAAFEKTLV  158 (320)
T ss_dssp             CCCHHHHHHHHHHHHHTCC
T ss_pred             cCCHHHHHHHHHHHHHhcc
Confidence            4777887 89999999874

>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}

Probab=86.22  E-value=0.3  Score=40.53  Aligned_cols=19  Identities=11%  Similarity=0.081  Sum_probs=14.7

Q ss_pred             CCC-HHHHHHHHHHHHhhhh
Q 030717          143 RLQ-DEDIKLLAQFVKSQAD  161 (172)
Q Consensus       143 ~Ls-d~ei~~VaaYl~~~~~  161 (172)
                      .++ ++++.+|++|++++..
T Consensus       149 ~i~~~~~~~Aiaay~~sl~~  168 (328)
T 1zzh_A          149 PISFDNFALAVEAFEATLIT  168 (328)
T ss_dssp             CCCHHHHHHHHHHHHTTCCC
T ss_pred             cCCHHHHHHHHHHHHHHcCC
Confidence            344 6778999999998753

>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*

Probab=80.69  E-value=0.25  Score=41.35  Aligned_cols=20  Identities=30%  Similarity=0.650  Sum_probs=15.7

Q ss_pred             hhhHHhHHHHHH---------ccCccccC
Q 030717           67 TVDIQKGVSLFR---------QACIGCHD   86 (172)
Q Consensus        67 ~~d~~~G~~lf~---------~~C~~CHg   86 (172)
                      .+.++-|+.||.         ..|++||.
T Consensus        45 ~~kv~LGr~LFfD~~LS~~~~~SCASCH~   73 (341)
T 4aan_A           45 PSRVELGRMLFFDPRLSASHLISCNTCHN   73 (341)
T ss_dssp             HHHHHHHHHHHHCGGGSTTSCCCHHHHSB
T ss_pred             HHHHHHHHHHhcCcccCCCcCCCccccCC
Confidence            345788999992         46999995

>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*

Probab=80.64  E-value=0.77  Score=38.50  Aligned_cols=19  Identities=5%  Similarity=0.125  Sum_probs=15.5

Q ss_pred             CCCCHHHHH-HHHHHHHhhh
Q 030717          142 ARLQDEDIK-LLAQFVKSQA  160 (172)
Q Consensus       142 ~~Lsd~ei~-~VaaYl~~~~  160 (172)
                      ..+|.++|. +|++|++++.
T Consensus       167 ~~it~~~i~~AIAafertL~  186 (345)
T 3hq9_A          167 DPVTFDNMAKAIEVFEATLI  186 (345)
T ss_dssp             SCCCHHHHHHHHHHHHTTCC
T ss_pred             cCCCHHHHHHHHHHHHHhcC
Confidence            348999986 9999999874

>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*

Probab=80.24  E-value=0.77  Score=38.01  Aligned_cols=21  Identities=24%  Similarity=0.550  Sum_probs=16.7

Q ss_pred             hhhHHhHHHHHHc---------cCccccCC
Q 030717           67 TVDIQKGVSLFRQ---------ACIGCHDG   87 (172)
Q Consensus        67 ~~d~~~G~~lf~~---------~C~~CHg~   87 (172)
                      ...++.|++||..         .|++||..
T Consensus        28 ~~~v~lGk~LF~D~~LS~~~~~sCasCH~~   57 (326)
T 1nml_A           28 QAKVELGKMEFFEPRLSSSHLISCNTCHNV   57 (326)
T ss_dssp             HHHHHHHHHHHTCGGGSTTSCCCHHHHSCT
T ss_pred             HHHHHHHHHHhcCcccccCCCccchhcCCc
Confidence            3458899999943         69999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1gdva_	85	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	3e-20
d1f1fa_	88	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	3e-18
d1c6sa_	87	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	3e-16
d1e29a_	135	a.3.1.1 (A:) Photosystem II associated cytochrome	7e-16
d1cyja_	90	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	7e-16
d1f1ca_	129	a.3.1.1 (A:) Photosystem II associated cytochrome	1e-14
d1mz4a_	131	a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus	3e-14
d1ctja_	89	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	7e-13
d1ls9a_	91	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	2e-11
d1kb0a1	97	a.3.1.6 (A:579-675) Quinoprotein alcohol dehydroge	4e-10
d1kv9a1	104	a.3.1.6 (A:561-664) Quinoprotein alcohol dehydroge	7e-09
d1c75a_	71	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	7e-08
d1qksa1	127	a.3.1.2 (A:9-135) N-terminal (heme c) domain of cy	4e-07
d1cc5a_	83	a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii	4e-07
d1fcdc2	94	a.3.1.4 (C:81-174) Flavocytochrome c sulfide dehyd	2e-06
d1nira1	112	a.3.1.2 (A:6-117) N-terminal (heme c) domain of cy	7e-06
d1kx7a_	81	a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {She	7e-06
d1hroa_	105	a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis	1e-05
d1ccra_	111	a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embr	7e-05
d1lfma_	103	a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin t	8e-05
d1cora_	82	a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri	8e-05
d1gksa_	78	a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira h	2e-04
d1wvec1	74	a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cy	2e-04
d1c52a_	131	a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus	3e-04
d2gc4d1	147	a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus deni	4e-04
d1m70a1	92	a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutze	4e-04
d1cnoa_	86	a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica	4e-04
d351ca_	82	a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aerugino	0.002
d1fcdc1	80	a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydro	0.002
d1ycca_	108	a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's y	0.003
d1a56a_	81	a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europae	0.003

>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Red alga (Porphyra yezoensis) [TaxId: 2788]} Length = 85

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Red alga (Porphyra yezoensis) [TaxId: 2788]

 Score = 78.4 bits (192), Expect = 3e-20
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
           D+  G  +F   C  CH GG N I P  TL    L+ N ++T D I +    GK  MP  
Sbjct: 2   DLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMPA- 60

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
                      FG RL DEDI+  A +V SQ+++GW
Sbjct: 61  -----------FGGRLVDEDIEDAANYVLSQSEKGW 85

>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]} Length = 88

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Arthrospira maxima [TaxId: 129910]

 Score = 73.0 bits (178), Expect = 3e-18
 Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 16/100 (16%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDL----QRNGVDTEDEIYHVTYFGKGR 124
           D+  G S+F   C  CH GG NVI    TL   DL    +    D    + +    GK  
Sbjct: 1   DVAAGASVFSANCAACHMGGRNVIVANKTLSKSDLAKYLKGFDDDAVAAVAYQVTNGKNA 60

Query: 125 MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
           MPGF              RL    I+ +A +V  QA++GW
Sbjct: 61  MPGFNG------------RLSPLQIEDVAAYVVDQAEKGW 88

>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]} Length = 87

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]

 Score = 67.6 bits (164), Expect = 3e-16
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
           D+  G  +F   C  CH GGGNV+    TL  + L++ G+ +ED I +    GK  MP  
Sbjct: 2   DLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMYSEDAIIYQVQHGKNAMPA- 60

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
                      F  RL DE I+ +A +V  QA +GW
Sbjct: 61  -----------FAGRLTDEQIQDVAAYVLDQAAKGW 85

>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 135

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

 Score = 68.4 bits (166), Expect = 7e-16
 Identities = 18/105 (17%), Positives = 29/105 (27%), Gaps = 9/105 (8%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG--VDTEDEIYH-----VTYFG 121
               G  +F   C  CH  G        +L L DL       D    +        +Y G
Sbjct: 25  QFTNGQKIFVDTCTQCHLQGKTKTNNNVSLGLADLAGAEPRRDNVLALVEFLKNPKSYDG 84

Query: 122 KGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA--DQGW 164
           +          +            ++DI  +A +       D+ W
Sbjct: 85  EDDYSELHPNISRPDIYPEMRNYTEDDIFDVAGYTLIAPKLDERW 129

>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 90

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 67.1 bits (163), Expect = 7e-16
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMP 126
           D+  G  +F   C  CH GG N + P  TL    L++  +G    + I +    GKG MP
Sbjct: 2   DLALGAQVFNGNCAACHMGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQVENGKGAMP 61

Query: 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA-DQGW 164
            + +            RL +E+I+ +A++V  QA D  W
Sbjct: 62  AWAD------------RLSEEEIQAVAEYVFKQATDAAW 88

>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Arthrospira maxima [TaxId: 129910]} Length = 129

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Arthrospira maxima [TaxId: 129910]

 Score = 64.6 bits (156), Expect = 1e-14
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 10/106 (9%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTY-------FG 121
           +I+KG  +F  AC  CH  G     P   L  + L       ++    V Y        G
Sbjct: 23  EIKKGQQVFNAACAQCHALGVTRTNPDVNLSPEALALATPPRDNIAALVDYIKNPTTYDG 82

Query: 122 KGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGW 164
              +                  + ++D+  +A ++  Q     + W
Sbjct: 83  FVEISELHPSLKSSDIFPKMRNISEDDLYNVAGYILLQPKVRGEQW 128

>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus [TaxId: 146786]} Length = 131

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c550
species: Thermosynechococcus elongatus [TaxId: 146786]

 Score = 63.8 bits (154), Expect = 3e-14
 Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 10/106 (9%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYF-------G 121
              +G  LF+ AC  CH GG     P   L  + L       ++    V Y        G
Sbjct: 25  QYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDG 84

Query: 122 KGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGW 164
           +  +                  L ++D+  +A  +  +       W
Sbjct: 85  EQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKW 130

>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]} Length = 89

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Monoraphidium braunii [TaxId: 34112]

 Score = 59.1 bits (142), Expect = 7e-13
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 15/99 (15%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMP 126
           D+  G ++F   C  CH GGGN + P  TL    +++  +G    + I +    GKG MP
Sbjct: 3   DLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAMP 62

Query: 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA-DQGW 164
                        +  RL +++I  +A +V  QA    W
Sbjct: 63  A------------WDGRLDEDEIAGVAAYVYDQAAGNKW 89

>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Green alga (Cladophora glomerata) [TaxId: 162068]} Length = 91

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Green alga (Cladophora glomerata) [TaxId: 162068]

 Score = 55.3 bits (132), Expect = 2e-11
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 15/98 (15%)

Query: 70  IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQ--RNGVDTEDEIYHVTYFGKGRMPG 127
           +  G  +F   C  CH GG N +    TL    ++    G  T + I +    GKG MP 
Sbjct: 6   LADGKKVFAGNCAACHLGGNNSVLADKTLKKDAIEKYLEGGLTLEAIKYQVNNGKGAMPA 65

Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQ-GW 164
           + +            RL ++DI+ ++ +V  QA    W
Sbjct: 66  WAD------------RLDEDDIEAVSNYVYDQAVNSKW 91

>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 97

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Comamonas testosteroni [TaxId: 285]

 Score = 52.2 bits (124), Expect = 4e-10
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 13/97 (13%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
            ++ G  L+   C+ CH G   V + G    L  +  + ++               MP F
Sbjct: 14  KVEAGTMLYVANCVFCH-GVPGVDRGGNIPNLGYMDASYIENLPNFVFKGPAMVRGMPDF 72

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWP 165
                         +L  +D++ L  F++  AD   P
Sbjct: 73  T------------GKLSGDDVESLKAFIQGTADAIRP 97

>d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase, C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 104

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

 Score = 48.8 bits (115), Expect = 7e-09
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 14/96 (14%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
            +Q G  L+ Q C  CH  G      G    L+       +   +I          MP F
Sbjct: 19  QVQAGKQLYGQFCSVCHGMGTI--SGGLIPDLRQSSDATREHFQQIVLQGALKPLGMPSF 76

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
                          L+ E+++ +  +V S+  + +
Sbjct: 77  D------------DSLKPEEVEQIKLYVMSREYEDY 100

>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]} Length = 71

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Bacillus pasteurii [TaxId: 1474]

 Score = 45.4 bits (107), Expect = 7e-08
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 19/87 (21%)

Query: 73  GVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKC 132
             ++ +Q CI CH   G  +   +   +         +E+EI  +   G+G MPG     
Sbjct: 3   AEAVVQQKCISCH---GGDLTGASAPAIDKAG--ANYSEEEILDIILNGQGGMPGG---- 53

Query: 133 TPRGQCTFGARLQDEDIKLLAQFVKSQ 159
                       +  + + +A ++  +
Sbjct: 54  ----------IAKGAEAEAVAAWLAEK 70

>d1qksa1 a.3.1.2 (A:9-135) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 127

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
domain: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.9 bits (105), Expect = 4e-07
 Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 14/103 (13%)

Query: 60  AAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTY 119
              +L+      +   ++ + C GCH          A              +     +TY
Sbjct: 37  GVTALSDA-QYNEANKIYFERCAGCHGVLRKGATGKALTPDLTRDL---GFDYLQSFITY 92

Query: 120 FGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQ 162
                MP +G              L  E + L+A ++      
Sbjct: 93  ASPAGMPNWGTS----------GELSAEQVDLMANYLLLDPAA 125

>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]} Length = 83

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c5
species: Azotobacter vinelandii [TaxId: 354]

 Score = 43.7 bits (102), Expect = 4e-07
 Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 10/90 (11%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
             + G  +  + C  CH  G               + +     D +   +  G   MP  
Sbjct: 3   GARSGDDVVAKYCNACHGTGLLNAPKVGDSAAWKTRADAKGGLDGLLAQSLSGLNAMPPK 62

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKS 158
                        A   D+++K     +  
Sbjct: 63  ----------GTCADCSDDELKAAIGKMSG 82

>d1fcdc2 a.3.1.4 (C:81-174) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 94

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 9/98 (9%)

Query: 65  AQTVD---IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFG 121
            Q+ D      G  L  + C  CH  GG  +              G  T    Y ++ F 
Sbjct: 2   KQSFDTALADTGAKLHDKYCEKCHVEGGKPLADEEDYH----ILAGQWTPYLQYAMSDFR 57

Query: 122 KGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159
           + R P   +               D  +  L  F  SQ
Sbjct: 58  EERRPMEKKM--ASKLRELLKAEGDAGLDALFAFYASQ 93

>d1nira1 a.3.1.2 (A:6-117) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 112

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
domain: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.2 bits (95), Expect = 7e-06
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 13/94 (13%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
           +  +   ++ Q C GCH       +      L          +     +TY     MP +
Sbjct: 30  EFNEAKQIYFQRCAGCHGVLR---KGATGKPLTPDITQQRGQQYLEALITYGTPLGMPNW 86

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQ 162
           G              L  E I L+A++++    Q
Sbjct: 87  GSS----------GELSKEQITLMAKYIQHTPPQ 110

>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella putrefaciens [TaxId: 24]} Length = 81

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome ScyA
species: Shewanella putrefaciens [TaxId: 24]

 Score = 40.2 bits (93), Expect = 7e-06
 Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 12/88 (13%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
           D+Q   +++ +AC  CH  G        +    D +       D +      G   MP  
Sbjct: 2   DLQDAEAIYNKACTVCHSMGVAGAPK--SHNTADWEPRLAKGVDNLVKSVKTGLNAMPPG 59

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFV 156
                            DED K   +F+
Sbjct: 60  ----------GMCTDCTDEDYKAAIEFM 77

>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]} Length = 105

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopila globiformis [TaxId: 1071]

 Score = 40.1 bits (93), Expect = 1e-05
 Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 14/105 (13%)

Query: 65  AQTVDIQKGVSLFRQACIGCH--DGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK 122
           A   D  +G  LF   CI CH    G N +          + R+        Y       
Sbjct: 2   APPGDPVEGKHLFHTICITCHTDIKGANKV---GPSLYGVVGRHSGIEPGYNYSEANIKS 58

Query: 123 GRMPGFGE---------KCTPRGQCTFGARLQDEDIKLLAQFVKS 158
           G +              K  P  +  +  +   +    +  ++++
Sbjct: 59  GIVWTPDVLFKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLET 103

>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos (Oryza sativa) [TaxId: 4530]} Length = 111

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Rice embryos (Oryza sativa) [TaxId: 4530]

 Score = 38.1 bits (88), Expect = 7e-05
 Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 9/109 (8%)

Query: 60  AAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTY 119
           A+ S A   + + G  +F+  C  CH                   R    T    Y    
Sbjct: 1   ASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTAD 60

Query: 120 FGKGRMPGFGE---------KCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159
                +              K  P  +  F    + ++   L  ++K  
Sbjct: 61  KNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEA 109

>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]} Length = 103

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Bluefin tuna (Thunnus thynnus) [TaxId: 8237]

 Score = 37.9 bits (87), Expect = 8e-05
 Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 9/100 (9%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
           D+ KG   F Q C  CH                   R     E   Y      KG +   
Sbjct: 2   DVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNN 61

Query: 129 ---------GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159
                     +K  P  +  F    +  + + L  ++KS 
Sbjct: 62  DTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSA 101

>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]} Length = 82

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas stutzeri [TaxId: 316]

 Score = 37.3 bits (85), Expect = 8e-05
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 71  QKGVSLFRQ-ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFG 129
           + G +LF+   C  CH     ++ P      K++       +     +   G  +    G
Sbjct: 1   EDGEALFKSKPCAACHSIDAKLVGPA----FKEVAAKYAGQDGAADLL--AGHIKNGSQG 54

Query: 130 EKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159
                         + +E+ K+LA+++ SQ
Sbjct: 55  VWGPIPMPPNP---VTEEEAKILAEWILSQ 81

>d1gksa_ a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira halophila [TaxId: 1053]} Length = 78

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Ectothiorhodospira halophila [TaxId: 1053]

 Score = 36.3 bits (83), Expect = 2e-04
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 15/79 (18%)

Query: 80  ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCT 139
            C  CHD G         L   +   +   + DE+   T  GKG MP +  +        
Sbjct: 13  TCSSCHDRGVAGAPE---LNAPEDWADRPSSVDELVESTLAGKGAMPAYDGRAD------ 63

Query: 140 FGARLQDEDIKLLAQFVKS 158
                  ED+    +++ S
Sbjct: 64  ------REDLVKAIEYMLS 76

>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]} Length = 74

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: p-Cresol methylhydroxylase, cytochrome c subunit
species: Pseudomonas putida [TaxId: 303]

 Score = 36.0 bits (82), Expect = 2e-04
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 20/90 (22%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
               G +L+ + C  CH     V   G  L  + L          I  +   G   MP F
Sbjct: 2   QWGSGKNLYDKVCGHCHKPEVGV---GPVLEGRGLPEA------YIKDIVRNGFRAMPAF 52

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKS 158
                        + + DE +  +A+++ S
Sbjct: 53  -----------PASYVDDESLTQVAEYLSS 71

>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]} Length = 131

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Thermus thermophilus [TaxId: 274]

 Score = 36.7 bits (84), Expect = 3e-04
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 72  KGVSLFRQACIGCH--DGGGNV-IQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
            G  ++   C GCH  +G G     P     + ++       E  I  + Y  +G++   
Sbjct: 3   DGAKIY-AQCAGCHQQNGQGIPGAFPPLAGHVAEILAKEGGREYLILVLLYGLQGQIEVK 61

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159
           G      G  +  A+L+DE+I  +   + + 
Sbjct: 62  GM--KYNGVMSSFAQLKDEEIAAVLNHIATA 90

>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus denitrificans [TaxId: 266]} Length = 147

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 9/90 (10%), Positives = 19/90 (21%), Gaps = 12/90 (13%)

Query: 70  IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFG 129
           + +   L+   C GCH                               +     G+M    
Sbjct: 46  LPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWTYPGNETDVGLFSTLYGGATGQMGP-- 103

Query: 130 EKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159
                         L  +++     +V+  
Sbjct: 104 ----------MWGSLTLDEMLRTMAWVRHL 123

>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]} Length = 92

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Pseudomonas stutzeri [TaxId: 316]

 Score = 35.8 bits (81), Expect = 4e-04
 Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 5/91 (5%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
           D + G       C  CH G            L       +  + +               
Sbjct: 3   DAEAGQGKV-AVCGACH-GVDGNSPAPNFPKLAGQGERYLLKQLQDIKAGSTPGAPEGVG 60

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159
            +     G       L D+D++ +A +  SQ
Sbjct: 61  RKVLEMTG---MLDPLSDQDLEDIAAYFSSQ 88

>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]} Length = 86

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Pseudomonas nautica [TaxId: 2743]

 Score = 35.5 bits (81), Expect = 4e-04
 Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 11/91 (12%)

Query: 69  DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
           DI+ G +     C  CH   G    P            G   +  +  +  +  G+  G 
Sbjct: 3   DIEAGKAKA-AVCAACHGQNGISQVPIYPNL------AGQKEQYLVAALKAYKAGQRQGG 55

Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159
                          L D DI  LA +  S 
Sbjct: 56  QAPVMQG----QATALSDADIANLAAYYASN 82

>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]} Length = 82

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 33.4 bits (75), Expect = 0.002
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 71  QKGVSLFRQ-ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFG 129
           +    LF+   C+ CH     ++ P    +     +       E         G    +G
Sbjct: 1   EDPEVLFKNKGCVACHAIDTKMVGPA---YKDVAAKFAGQAGAEAELAQRIKNGSQGVWG 57

Query: 130 EKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159
               P         + D++ + LA++V SQ
Sbjct: 58  PIPMPPNA------VSDDEAQTLAKWVLSQ 81

>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 80

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 33.3 bits (75), Expect = 0.002
 Identities = 12/85 (14%), Positives = 19/85 (22%), Gaps = 13/85 (15%)

Query: 76  LFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPR 135
           +    C GCH         G            +   D +  V      +          R
Sbjct: 6   MLTNNCAGCH---------GTHGNSVGPASPSIAQMDPMVFVEVMEGFKSGEIASTIMGR 56

Query: 136 GQCTFGARLQDEDIKLLAQFVKSQA 160
                       D + +A + K Q 
Sbjct: 57  ----IAKGYSTADFEKMAGYFKQQT 77

>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 108

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 11/109 (10%)

Query: 63  SLAQTVDIQKGVSLFRQACIGCHD-GGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFG 121
           +  +    +KG +LF+  C+ CH    G   + G  L     + +G   E   Y      
Sbjct: 1   TEFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQA-EGYSYTDANIK 59

Query: 122 KGRMPGFGE---------KCTPRGQCTFGARLQDEDIKLLAQFVKSQAD 161
           K  +              K  P  +  FG   +++D   L  ++K   +
Sbjct: 60  KNVLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKACE 108

>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea [TaxId: 915]} Length = 81

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Nitrosomonas europaea [TaxId: 915]

 Score = 33.0 bits (74), Expect = 0.003
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 8/82 (9%)

Query: 78  RQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQ 137
           +  CI CH     V+ P          +     +   Y       G    +G+   P   
Sbjct: 7   KNNCIACHQVETKVVGPA---LKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMP--- 60

Query: 138 CTFGARLQDEDIKLLAQFVKSQ 159
                 + D D K LA ++ + 
Sbjct: 61  --PNVNVSDADAKALADWILTL 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1c6sa_	87	Cytochrome c6 (synonym: cytochrome c553) {Cyanobac	99.85
d1gdva_	85	Cytochrome c6 (synonym: cytochrome c553) {Red alga	99.84
d1f1fa_	88	Cytochrome c6 (synonym: cytochrome c553) {Arthrosp	99.81
d1ctja_	89	Cytochrome c6 (synonym: cytochrome c553) {Monoraph	99.78
d1cyja_	90	Cytochrome c6 (synonym: cytochrome c553) {Chlamydo	99.78
d1ls9a_	91	Cytochrome c6 (synonym: cytochrome c553) {Green al	99.77
d1kx7a_	81	Mono-heme c-type cytochrome ScyA {Shewanella putre	99.7
d1wvec1	74	p-Cresol methylhydroxylase, cytochrome c subunit {	99.67
d1kv9a1	104	Quinoprotein alcohol dehydrogenase, C-terminal dom	99.67
d1kb0a1	97	Quinoprotein alcohol dehydrogenase, C-terminal dom	99.67
d1c75a_	71	Cytochrome c6 (synonym: cytochrome c553) {Bacillus	99.64
d1cc5a_	83	Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]	99.62
d1nira1	112	N-terminal (heme c) domain of cytochrome cd1-nitri	99.62
d1gksa_	78	Cytochrome c551 {Ectothiorhodospira halophila [Tax	99.61
d1qksa1	127	N-terminal (heme c) domain of cytochrome cd1-nitri	99.61
d1fcdc2	94	Flavocytochrome c sulfide dehydrogenase, FCSD, cyt	99.59
d1mz4a_	131	Cytochrome c550 {Thermosynechococcus elongatus [Ta	99.58
d1m70a1	92	Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}	99.57
d1e29a_	135	Photosystem II associated cytochrome c549 {Synecho	99.57
d1f1ca_	129	Photosystem II associated cytochrome c549 {Arthros	99.55
d1cnoa_	86	Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]	99.54
d2gc4d1	147	Cytochrome c551 {Paracoccus denitrificans [TaxId:	99.54
d1cora_	82	Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]	99.54
d2c8sa1	149	Cytochrome c-L (MoxG) {Methylobacterium extorquens	99.53
d1c53a_	79	Cytochrome c6 (synonym: cytochrome c553) {Desulfov	99.52
d1fcdc1	80	Flavocytochrome c sulfide dehydrogenase, FCSD, cyt	99.51
d351ca_	82	Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 28	99.5
d1hroa_	105	Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]	99.43
d1lfma_	103	Mitochondrial cytochrome c {Bluefin tuna (Thunnus	99.41
d1c52a_	131	Cytochrome c552 {Thermus thermophilus [TaxId: 274]	99.41
d1a56a_	81	Cytochrome c552 {Nitrosomonas europaea [TaxId: 915	99.41
d1h32b_	138	Mono-heme c-type cytochrome SoxX {Rhodovulum sulfi	99.38
d1ynra1	80	Cytochrome c552 {Hydrogenobacter thermophilus [Tax	99.38
d1ccra_	111	Mitochondrial cytochrome c {Rice embryos (Oryza sa	99.37
d1m70a2	98	Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}	99.34
d1h1oa1	82	Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 9	99.32
d1ycca_	108	Mitochondrial cytochrome c {Baker's yeast (Sacchar	99.31
d3c2ca_	112	Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]	99.29
d1h1oa2	90	Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 9	99.29
d1ql3a_	99	Cytochrome c552 {Paracoccus denitrificans [TaxId:	99.24
d1i8oa_	114	Cytochrome c2 {Rhodopseudomonas palustris [TaxId:	99.23
d1co6a_	107	Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 10	99.19
d1qn2a_	99	Cytochrome ch {Methylobacterium extorquens [TaxId:	99.15
d1cxca_	124	Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 106	99.15
d1jdla_	118	Cytochrome c2 {Rhodospirillum centenum [TaxId: 340	99.09
d1cota_	121	Cytochrome c2 {Paracoccus denitrificans [TaxId: 26	98.97
d1vyda_	116	Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061	98.78
d1nmla2	160	Di-heme cytochrome c peroxidase {Pseudomonas nauti	98.14
d1eb7a2	159	Di-heme cytochrome c peroxidase {Pseudomonas aerug	98.04
d1pbya1	85	Quinohemoprotein amine dehydrogenase A chain, doma	98.04
d1jmxa1	84	Quinohemoprotein amine dehydrogenase A chain, doma	97.87
d1iqca2	158	Di-heme cytochrome c peroxidase {Nitrosomonas euro	97.7
d1dw0a_	112	SHP, an oxygen binding cytochrome c {Rhodobacter s	97.42
d1gu2a_	124	Cytochrome c'' {Methylophilus methylotrophus, stra	97.2
d1h32a2	111	Di-heme cytochrome c SoxA {Rhodovulum sulfidophilu	96.91
d1h32a1	150	Di-heme cytochrome c SoxA {Rhodovulum sulfidophilu	96.57
d1ppjd1	195	Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 99	95.78
d3cx5d1	199	Cytochrome bc1 domain {Baker's yeast (Saccharomyce	95.57
d1iqca1	150	Di-heme cytochrome c peroxidase {Nitrosomonas euro	88.6
d1nmla1	166	Di-heme cytochrome c peroxidase {Pseudomonas nauti	88.54
d1eb7a1	164	Di-heme cytochrome c peroxidase {Pseudomonas aerug	87.71

>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]

Probab=99.85  E-value=1.4e-21  Score=132.67  Aligned_cols=87  Identities=39%  Similarity=0.702  Sum_probs=73.9

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDE  147 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~  147 (172)
                      +|+++|++||+.+|++|||.+|.+...+.++...........+...+...+.+|.+.||+|.            ..|||+
T Consensus         1 Ad~~~G~~ly~~~Ca~CHg~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~mp~~~------------~~Ls~~   68 (87)
T d1c6sa_           1 ADLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMYSEDAIIYQVQHGKNAMPAFA------------GRLTDE   68 (87)
T ss_dssp             CCHHHHHHHHTTTGGGGCTTTCCSSSSSCCSSSTTTTTSSCCSHHHHHHHHSSCBTTBCCCT------------TTSCSH
T ss_pred             CcHHHHHHHHHHHChhhhhhcccccccCCCccchhhhhhccCcHHHHHHHHHcCcccccccc------------CCCCHH
Confidence            36889999999999999999888766555544445545556678899999999999999997            789999


Q ss_pred             HHHHHHHHHHhhhhCCCCC
Q 030717          148 DIKLLAQFVKSQADQGWPK  166 (172)
Q Consensus       148 ei~~VaaYl~~~~~~gw~~  166 (172)
                      ||++|++||.+++.++|.+
T Consensus        69 ei~~v~aYi~~~a~~gw~g   87 (87)
T d1c6sa_          69 QIQDVAAYVLDQAAKGWAG   87 (87)
T ss_dssp             HHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999974

>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Red alga (Porphyra yezoensis) [TaxId: 2788]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Red alga (Porphyra yezoensis) [TaxId: 2788]

Probab=99.84  E-value=1.6e-21  Score=131.76  Aligned_cols=85  Identities=42%  Similarity=0.726  Sum_probs=72.5

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDE  147 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~  147 (172)
                      +|+++|++||+.+|++|||.++.+..++..+....+......+.+.+...+++|.+.||+|+            ..|||+
T Consensus         1 Adi~~G~~ly~~~Ca~CHg~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Mp~~~------------~~Lsd~   68 (85)
T d1gdva_           1 ADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMPAFG------------GRLVDE   68 (85)
T ss_dssp             CHHHHHHHHHHHHTHHHHGGGCCSSSTTSCCCHHHHHHTTCCSHHHHHHHHHHCBTTBCCCT------------TTSCHH
T ss_pred             CCHHHHHHHHHHHChHhhhcccCCCCCCCCCchhhhhcccccCHHHHHHHHhcCCCCCCccc------------CCCCHH
Confidence            46889999999999999998877666555444555555566678999999999999999997            789999


Q ss_pred             HHHHHHHHHHhhhhCCC
Q 030717          148 DIKLLAQFVKSQADQGW  164 (172)
Q Consensus       148 ei~~VaaYl~~~~~~gw  164 (172)
                      ||++|++||.+++++||
T Consensus        69 ei~~v~~Yi~~~a~~gw   85 (85)
T d1gdva_          69 DIEDAANYVLSQSEKGW   85 (85)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHCcC
Confidence            99999999999999999

>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Arthrospira maxima [TaxId: 129910]

Probab=99.81  E-value=1e-20  Score=128.21  Aligned_cols=84  Identities=38%  Similarity=0.633  Sum_probs=67.7

Q ss_pred             hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc----CCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR----NGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARL  144 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~----~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~L  144 (172)
                      |+++|++||+.+|++||+.+|.+..+++.+..+.+..    ........+...+.+|.+.||+|+            ..|
T Consensus         1 Di~~G~~ly~~~Ca~CHg~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Mp~~~------------~~L   68 (88)
T d1f1fa_           1 DVAAGASVFSANCAACHMGGRNVIVANKTLSKSDLAKYLKGFDDDAVAAVAYQVTNGKNAMPGFN------------GRL   68 (88)
T ss_dssp             CHHHHHHHHHHHTHHHHGGGCCSSSTTCCSSHHHHHHHSTTTTTCHHHHHHHHHHHCBTTBCCCT------------TTS
T ss_pred             ChHHHHHHHHHHHHHhhcCcccCCccCCCCCccchhhhccccccchHHHHHHHHhcCcCCCCccc------------CCC
Confidence            6789999999999999998877655554443333322    123457778889999999999997            789


Q ss_pred             CHHHHHHHHHHHHhhhhCCC
Q 030717          145 QDEDIKLLAQFVKSQADQGW  164 (172)
Q Consensus       145 sd~ei~~VaaYl~~~~~~gw  164 (172)
                      ||+||++|++||.+++++||
T Consensus        69 sd~ei~~v~aYi~~~a~~gw   88 (88)
T d1f1fa_          69 SPLQIEDVAAYVVDQAEKGW   88 (88)
T ss_dssp             CHHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHccC
Confidence            99999999999999999999

>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Monoraphidium braunii [TaxId: 34112]

Probab=99.78  E-value=1.1e-19  Score=123.68  Aligned_cols=85  Identities=33%  Similarity=0.616  Sum_probs=68.3

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc--CCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQ  145 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~--~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Ls  145 (172)
                      +|+++|++||+.+|++||+.++.+..+...+..+.+..  ......+.+...+.+|.+.||+|+            ..||
T Consensus         2 adl~~G~~ly~~~Ca~CHg~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Mp~~~------------~~Ls   69 (89)
T d1ctja_           2 ADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAMPAWD------------GRLD   69 (89)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSSSTTSCSSHHHHHHHSTTCSSHHHHHHHHHHCBTTBCCCB------------TTBC
T ss_pred             ccHHHHHHHHHHhchhccccccCccccCCCCCccchhhhhcccccHHHHHHHHhcCcCCCCccC------------CCCC
Confidence            57899999999999999998877655444333333332  334568889999999999999997            7899


Q ss_pred             HHHHHHHHHHHHhhh-hCCC
Q 030717          146 DEDIKLLAQFVKSQA-DQGW  164 (172)
Q Consensus       146 d~ei~~VaaYl~~~~-~~gw  164 (172)
                      ++||++|++||.+++ .++|
T Consensus        70 d~ei~~v~~Yi~~~~~~~~w   89 (89)
T d1ctja_          70 EDEIAGVAAYVYDQAAGNKW   89 (89)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHccCCCC
Confidence            999999999999986 6777

>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Chlamydomonas reinhardtii [TaxId: 3055]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.78  E-value=1.1e-19  Score=123.95  Aligned_cols=86  Identities=35%  Similarity=0.609  Sum_probs=68.5

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhh--cCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQ--RNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQ  145 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~--~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Ls  145 (172)
                      +|+++|++||+.+|++||+.++.+......+....+.  .....+.+.+...+.+|.+.||+|+            ..||
T Consensus         1 Adi~~G~~ly~~~Ca~CHg~~g~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~g~~~mp~~~------------~~Ls   68 (90)
T d1cyja_           1 ADLALGAQVFNGNCAACHMGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQVENGKGAMPAWA------------DRLS   68 (90)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSSSTTSCSSHHHHHHHSTTCSSHHHHHHHHHHCBTTBCCCT------------TTSC
T ss_pred             CcHHHHHHHHHHHCHHhhcccccccCCCCCCCcchhhhhhccCCcHHHHHHHHHcCcCCCCccc------------CCCC
Confidence            4689999999999999999877665544443333333  2334568889999999999999997            7899


Q ss_pred             HHHHHHHHHHHHhhh-hCCCC
Q 030717          146 DEDIKLLAQFVKSQA-DQGWP  165 (172)
Q Consensus       146 d~ei~~VaaYl~~~~-~~gw~  165 (172)
                      |+||++|++||.+++ +++|.
T Consensus        69 d~ei~~v~aYi~~~a~~~~w~   89 (90)
T d1cyja_          69 EEEIQAVAEYVFKQATDAAWK   89 (90)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHccCCCCC
Confidence            999999999999987 56886

>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Green alga (Cladophora glomerata) [TaxId: 162068]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Green alga (Cladophora glomerata) [TaxId: 162068]

Probab=99.77  E-value=4.7e-19  Score=120.68  Aligned_cols=86  Identities=30%  Similarity=0.540  Sum_probs=67.1

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhh--cCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQ--RNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARL  144 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~--~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~L  144 (172)
                      ++.+++|++||+.+|++||+.++.+..+.+.+....+.  .........+...+.+|.+.||+|+            ..|
T Consensus         3 a~~~~~G~~ly~~~Ca~CHg~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~MP~~~------------~~L   70 (91)
T d1ls9a_           3 AELLADGKKVFAGNCAACHLGGNNSVLADKTLKKDAIEKYLEGGLTLEAIKYQVNNGKGAMPAWA------------DRL   70 (91)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGCCSSSTTSCSSHHHHHHHSTTCSCHHHHHHHHHHCBTTBCCCT------------TTS
T ss_pred             HHHHHHHHHHHHHhChHhhccccccccCCCCCChhhhhccccccchHHHHHHHhhcCcCCCcccc------------cCC
Confidence            34578999999999999999877765544443333322  2344568888899999999999997            789


Q ss_pred             CHHHHHHHHHHHHhhh-hCCC
Q 030717          145 QDEDIKLLAQFVKSQA-DQGW  164 (172)
Q Consensus       145 sd~ei~~VaaYl~~~~-~~gw  164 (172)
                      ||+||++|++||.+++ .++|
T Consensus        71 sdeei~~l~aYi~~~a~~~~w   91 (91)
T d1ls9a_          71 DEDDIEAVSNYVYDQAVNSKW   91 (91)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCC
Confidence            9999999999999987 4676

>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella putrefaciens [TaxId: 24]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome ScyA
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.70  E-value=1.2e-17  Score=111.98  Aligned_cols=79  Identities=23%  Similarity=0.320  Sum_probs=58.1

Q ss_pred             hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 030717           69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDED  148 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~e  148 (172)
                      |+++|++||+.+|++||+.++.+.....+  ...+......+.+.+...+.+|...||+++.          ...|||+|
T Consensus         2 d~~~G~~lY~~~Ca~CHg~~~~G~p~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~mp~~g~----------~~~Lsd~e   69 (81)
T d1kx7a_           2 DLQDAEAIYNKACTVCHSMGVAGAPKSHN--TADWEPRLAKGVDNLVKSVKTGLNAMPPGGM----------CTDCTDED   69 (81)
T ss_dssp             CCSCHHHHHHHTTTSSTTTTCTTCCCSSC--STTTTTTTTTCSHHHHHHHHHCCSSSCTTTT----------CSSCCHHH
T ss_pred             cHHHHHHHHHHHHHHHccCCCCCCCCCCC--hhhhhhcccccHHHHHHHHHhhccccccccc----------ccCCCHHH
Confidence            56789999999999999988765321111  1111122233567889999999999999852          26899999


Q ss_pred             HHHHHHHHHhh
Q 030717          149 IKLLAQFVKSQ  159 (172)
Q Consensus       149 i~~VaaYl~~~  159 (172)
                      |++|++||++.
T Consensus        70 i~~v~~Yi~~a   80 (81)
T d1kx7a_          70 YKAAIEFMSKA   80 (81)
T ss_dssp             HHHHHHHHSSC
T ss_pred             HHHHHHHHHhc
Confidence            99999999754

>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: p-Cresol methylhydroxylase, cytochrome c subunit
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=2e-17  Score=109.51  Aligned_cols=71  Identities=24%  Similarity=0.338  Sum_probs=57.4

Q ss_pred             HHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 030717           70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDI  149 (172)
Q Consensus        70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei  149 (172)
                      +..|++||+.+|++|||.+|.+        .|.|.+. .++.+.|...|++|++.||+|..           ..|||+|+
T Consensus         3 ~~~G~~ly~~~Ca~CHg~~g~~--------~p~l~~~-~~~~~~i~~~i~~G~~~MP~~~~-----------~~lsd~ei   62 (74)
T d1wvec1           3 WGSGKNLYDKVCGHCHKPEVGV--------GPVLEGR-GLPEAYIKDIVRNGFRAMPAFPA-----------SYVDDESL   62 (74)
T ss_dssp             SSSHHHHHHHTTHHHHSTTTCS--------SCCCTTS-CCCHHHHHHHHHHCBTTBCCCCT-----------TTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCcc--------hhhcccc-chhHHHHHHHHHhhccccccccc-----------ccCCHHHH
Confidence            4579999999999999977642        2233322 24799999999999999999961           57999999


Q ss_pred             HHHHHHHHhhh
Q 030717          150 KLLAQFVKSQA  160 (172)
Q Consensus       150 ~~VaaYl~~~~  160 (172)
                      ++|++||.++.
T Consensus        63 ~~l~~Yi~slp   73 (74)
T d1wvec1          63 TQVAEYLSSLP   73 (74)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHhCC
Confidence            99999999874

>d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase, C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=99.67  E-value=1.2e-17  Score=116.76  Aligned_cols=84  Identities=24%  Similarity=0.400  Sum_probs=64.5

Q ss_pred             cCchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC---CCCCCCCCCCCCCCCCCC
Q 030717           64 LAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK---GRMPGFGEKCTPRGQCTF  140 (172)
Q Consensus        64 ~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~---~~MP~~~~~~~~~~~~~~  140 (172)
                      .+...++++|++||+.+|++|||.++.+...     .|++......+.+.+...+.+|.   ..||+|+           
T Consensus        14 ~~~~~~~~~G~~ly~~~Ca~CHg~~g~g~~~-----~p~l~~~~~~~~~~~~~~i~~g~~~~~~Mp~~~-----------   77 (104)
T d1kv9a1          14 TAAPEQVQAGKQLYGQFCSVCHGMGTISGGL-----IPDLRQSSDATREHFQQIVLQGALKPLGMPSFD-----------   77 (104)
T ss_dssp             CCCHHHHHHHHHHHHHHTHHHHCGGGCCCSS-----SCCGGGCCHHHHHTHHHHHHHCTTGGGTCCCCT-----------
T ss_pred             CCCHHHHHHHHHHHHHHhhhhccCCCCCCCC-----CCccccccccchHHHHHHHHhhhcccccCCccc-----------
Confidence            3445678899999999999999977664221     34454443335677888888885   3799997           


Q ss_pred             CCCCCHHHHHHHHHHHHhhhhCCC
Q 030717          141 GARLQDEDIKLLAQFVKSQADQGW  164 (172)
Q Consensus       141 ~~~Lsd~ei~~VaaYl~~~~~~gw  164 (172)
                       ..|||+||++|++||+++..+.|
T Consensus        78 -~~Lsd~ei~~v~aYi~s~~~~~~  100 (104)
T d1kv9a1          78 -DSLKPEEVEQIKLYVMSREYEDY  100 (104)
T ss_dssp             -TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -cCCCHHHHHHHHHHHHHhCcchh
Confidence             78999999999999999986654

>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=99.67  E-value=1.2e-17  Score=115.49  Aligned_cols=82  Identities=21%  Similarity=0.421  Sum_probs=62.0

Q ss_pred             CchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCC---CCCCCCCCCCCCCCCCCC
Q 030717           65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKG---RMPGFGEKCTPRGQCTFG  141 (172)
Q Consensus        65 a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~---~MP~~~~~~~~~~~~~~~  141 (172)
                      ...+++++|++||..+|++|||.+|.+..+.    .|.+......+.+.+...+.+|..   .||+|+            
T Consensus        10 ~d~~~~~~G~~ly~~~Ca~CHG~~g~g~~~~----~~~~~~~~~~~~~~~~~~i~~g~~~~~~MP~~~------------   73 (97)
T d1kb0a1          10 YDPAKVEAGTMLYVANCVFCHGVPGVDRGGN----IPNLGYMDASYIENLPNFVFKGPAMVRGMPDFT------------   73 (97)
T ss_dssp             CCGGGHHHHHHHHHHHTHHHHCSTTTSCCSS----SCCGGGSCHHHHHTHHHHHSSCTTGGGTCCCCT------------
T ss_pred             CCHHHHHHHHHHHHHHhHHhhCCCCCCCCCc----ccccccccccchHHHHHHHHhcccccCCCcccc------------
Confidence            3457899999999999999999877643322    444443333345667778877754   599997            


Q ss_pred             CCCCHHHHHHHHHHHHhhhhC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      ..||++||++|++||+++++.
T Consensus        74 ~~Ls~~ei~~i~aYl~~~ad~   94 (97)
T d1kb0a1          74 GKLSGDDVESLKAFIQGTADA   94 (97)
T ss_dssp             TTSCTTHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhccC
Confidence            789999999999999998754

>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Bacillus pasteurii [TaxId: 1474]

Probab=99.64  E-value=8e-17  Score=105.72  Aligned_cols=69  Identities=22%  Similarity=0.438  Sum_probs=55.7

Q ss_pred             hHHHHHHccCccccCCCCCCCCCCCCccchhhhcC-CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 030717           72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN-GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIK  150 (172)
Q Consensus        72 ~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~-~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~  150 (172)
                      +|++||+.+|++|||.++.+. .     .|+|.+. ...+.+.+...|++|++.||++              .||++|++
T Consensus         2 ~G~~ly~~~Ca~CHg~~~~G~-~-----gP~L~~~~~~~~~~~l~~~i~~G~~~MP~~--------------~Ls~~ei~   61 (71)
T d1c75a_           2 DAEAVVQQKCISCHGGDLTGA-S-----APAIDKAGANYSEEEILDIILNGQGGMPGG--------------IAKGAEAE   61 (71)
T ss_dssp             CHHHHHHHHTHHHHCTTSSCS-S-----SCCCTTGGGTSCHHHHHHHHHHCBTTBCSC--------------SSCHHHHH
T ss_pred             CHHHHHHHHHHHhCCCcccCc-c-----hhhccccccccChHHHHHHHHhCcCCCCCC--------------CCCHHHHH
Confidence            599999999999999877642 1     2344332 2347899999999999999987              49999999


Q ss_pred             HHHHHHHhhh
Q 030717          151 LLAQFVKSQA  160 (172)
Q Consensus       151 ~VaaYl~~~~  160 (172)
                      +|++||.+++
T Consensus        62 ~i~~Yl~~~K   71 (71)
T d1c75a_          62 AVAAWLAEKK   71 (71)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHHcC
Confidence            9999999874

>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c5
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.62  E-value=1.8e-17  Score=111.48  Aligned_cols=78  Identities=17%  Similarity=0.185  Sum_probs=55.7

Q ss_pred             hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC---CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN---GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQ  145 (172)
Q Consensus        69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~---~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Ls  145 (172)
                      ++.+|++||+.+|++||+.++.+.....   .+..+..   ...+.+.+.+.+.++.+.||+|+.          ...||
T Consensus         3 ~~~~G~~ly~~~Ca~CHg~~g~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~MP~~g~----------~~~Ls   69 (83)
T d1cc5a_           3 GARSGDDVVAKYCNACHGTGLLNAPKVG---DSAAWKTRADAKGGLDGLLAQSLSGLNAMPPKGT----------CADCS   69 (83)
T ss_dssp             CSSCSHHHHHHTTHHHHTTTTTTCCCTT---CHHHHHHHHHHHTSSTTTHHHHHHCBTTBCSSSS----------CSSCC
T ss_pred             CcchHHHHHHHHHHHHhcCCCCCCCCCC---ChhhcccccccccCHHHHHHHhhhcccccccccc----------cCCCC
Confidence            4578999999999999998877532211   1112110   011345677888899999999862          25799


Q ss_pred             HHHHHHHHHHHHhh
Q 030717          146 DEDIKLLAQFVKSQ  159 (172)
Q Consensus       146 d~ei~~VaaYl~~~  159 (172)
                      |+||++|++||.++
T Consensus        70 d~ei~~vv~Yi~~L   83 (83)
T d1cc5a_          70 DDELKAAIGKMSGL   83 (83)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999999875

>d1nira1 a.3.1.2 (A:6-117) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
domain: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.62  E-value=2.9e-16  Score=111.57  Aligned_cols=80  Identities=21%  Similarity=0.468  Sum_probs=60.6

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCTFGARLQ  145 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~~~~~Ls  145 (172)
                      ..++++|++||..+|++|||.+|.|. .++.+ .+..+...  +.+.|+++|++|+ +.||+|+.          ...||
T Consensus        28 ~~~~~~G~~ly~~~Ca~CHG~~g~G~-~gP~L-~~~~~~~~--~~~~l~~~I~~G~~~~MP~~~~----------~~~Ls   93 (112)
T d1nira1          28 ESEFNEAKQIYFQRCAGCHGVLRKGA-TGKPL-TPDITQQR--GQQYLEALITYGTPLGMPNWGS----------SGELS   93 (112)
T ss_dssp             HHHHHHHHHHHHHHTHHHHTTTTCCS-SSSCC-SHHHHHHH--CHHHHHHHHHHCCSSSCCCSTT----------TTSSC
T ss_pred             HHHHHHHHHHHHHHcccccccCcccc-cchhh-hhhhhhhh--hhhhhhhhhhhcccccCCCccc----------cCCCC
Confidence            45688999999999999999887653 23333 23333221  5788999999995 68999962          13699


Q ss_pred             HHHHHHHHHHHHhhh
Q 030717          146 DEDIKLLAQFVKSQA  160 (172)
Q Consensus       146 d~ei~~VaaYl~~~~  160 (172)
                      |+||++|++||+++.
T Consensus        94 d~ei~~l~~Yv~~~~  108 (112)
T d1nira1          94 KEQITLMAKYIQHTP  108 (112)
T ss_dssp             HHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHCC
Confidence            999999999998874

>d1gksa_ a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira halophila [TaxId: 1053]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Ectothiorhodospira halophila [TaxId: 1053]

Probab=99.61  E-value=3.1e-16  Score=104.61  Aligned_cols=72  Identities=28%  Similarity=0.458  Sum_probs=55.5

Q ss_pred             hHHHHHHc----cCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q 030717           72 KGVSLFRQ----ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDE  147 (172)
Q Consensus        72 ~G~~lf~~----~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~  147 (172)
                      .|++||.+    +|++||+.++.+.. .  ......+.......+.+...+.+|.+.||+|+            ..|||+
T Consensus         1 dG~~iy~~~~~~~CasCHg~~g~G~~-~--~~~~~~~~~~~~~~~~~~~~~~~g~~~MPa~g------------~~Lsde   65 (78)
T d1gksa_           1 DGESIYINGTAPTCSSCHDRGVAGAP-E--LNAPEDWADRPSSVDELVESTLAGKGAMPAYD------------GRADRE   65 (78)
T ss_dssp             CHHHHHHTSSSSCSHHHHTTTGGGCC-C--TTCHHHHHTSCCCHHHHHHHHHHCBTTBCCCB------------TTBCHH
T ss_pred             CHHHHHhhccchhhHHHhccCCCCCC-C--CCChhHccccchhHHHHHHHhhhcccccCccC------------CCCCHH
Confidence            48999965    79999998776422 1  11222333344568889999999999999998            789999


Q ss_pred             HHHHHHHHHHh
Q 030717          148 DIKLLAQFVKS  158 (172)
Q Consensus       148 ei~~VaaYl~~  158 (172)
                      ||++|++||.+
T Consensus        66 eI~~v~~Yi~~   76 (78)
T d1gksa_          66 DLVKAIEYMLS   76 (78)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999999976

>d1qksa1 a.3.1.2 (A:9-135) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
domain: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=4.8e-16  Score=112.82  Aligned_cols=80  Identities=21%  Similarity=0.418  Sum_probs=60.4

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCTFGARLQ  145 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~~~~~Ls  145 (172)
                      .+++++|++||..+|++|||.+|.|. .++.+ .+.++..  .+.+.|+.+|.+|+ +.||+|+.          ...||
T Consensus        43 ~~~~~~G~~ly~~~Ca~CHg~~g~G~-~gp~l-~~~~~~~--~~~~~l~~~I~~G~~~~MP~fg~----------~~~Ls  108 (127)
T d1qksa1          43 DAQYNEANKIYFERCAGCHGVLRKGA-TGKAL-TPDLTRD--LGFDYLQSFITYASPAGMPNWGT----------SGELS  108 (127)
T ss_dssp             HHHHHHHHHHHHHHTHHHHCTTSSCS-SSCCC-CHHHHHH--HCHHHHHHHHTTCCCCCCTTTSC----------CCCCC
T ss_pred             HHHHHHHHHHHHHHhHHhcCCcCCCC-cCCCc-cchhhhc--cCHHHHHHHHHhcccccCccccc----------CCCCC
Confidence            45678999999999999999887653 23333 3343322  25778999999997 57999962          13599


Q ss_pred             HHHHHHHHHHHHhhh
Q 030717          146 DEDIKLLAQFVKSQA  160 (172)
Q Consensus       146 d~ei~~VaaYl~~~~  160 (172)
                      |+||++|++||+++.
T Consensus       109 d~ei~~l~~Yi~~~~  123 (127)
T d1qksa1         109 AEQVDLMANYLLLDP  123 (127)
T ss_dssp             HHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999999999998864

>d1fcdc2 a.3.1.4 (C:81-174) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.59  E-value=9.2e-17  Score=110.18  Aligned_cols=79  Identities=18%  Similarity=0.149  Sum_probs=57.0

Q ss_pred             CchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHH---HHHhCCC--------CCCCCCCCCC
Q 030717           65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYH---VTYFGKG--------RMPGFGEKCT  133 (172)
Q Consensus        65 a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~---~i~~g~~--------~MP~~~~~~~  133 (172)
                      ..++.+++|++||..+|++|||.+|.+..+..  ..|.+.+.   +...+..   ..++|..        .||++.    
T Consensus         5 ~d~a~a~~G~~ly~~~Ca~CHg~~G~g~~~~~--~~p~l~g~---~~~yl~~~l~~~~~g~r~~~~~~~~~M~~~~----   75 (94)
T d1fcdc2           5 FDTALADTGAKLHDKYCEKCHVEGGKPLADEE--DYHILAGQ---WTPYLQYAMSDFREERRPMEKKMASKLRELL----   75 (94)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTSHHHHCCCCSSS--CCCCCTTC---CHHHHHHHHHHHHTTSSCCCHHHHHHHHTTG----
T ss_pred             ccHHHHHHhHHHHHHHhHHhcCcCCCCCCccc--cccccccC---ChHHHHHHHHHHHhCCCcCcchhHHHHHHHH----
Confidence            34566889999999999999998877543322  24555544   4444444   3445543        499987    


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          134 PRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       134 ~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                              ..|||+||++|++||.+|+
T Consensus        76 --------~~LSd~di~alaaY~~Sqk   94 (94)
T d1fcdc2          76 --------KAEGDAGLDALFAFYASQQ   94 (94)
T ss_dssp             --------GGSTHHHHHHHHHHHHHCC
T ss_pred             --------hcCCHHHHHHHHHHHHhcC
Confidence                    7899999999999999873

>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus [TaxId: 146786]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c550
species: Thermosynechococcus elongatus [TaxId: 146786]

Probab=99.58  E-value=6.7e-16  Score=111.21  Aligned_cols=87  Identities=21%  Similarity=0.349  Sum_probs=64.1

Q ss_pred             CchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCC------------------CC
Q 030717           65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGK------------------GR  124 (172)
Q Consensus        65 a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~------------------~~  124 (172)
                      ....++++|++||+.+|++||+.++.+..+..+...+.+...  ...+.+.+...++++.                  +.
T Consensus        21 ~~~~~~~~Gk~lf~~~Ca~CH~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (131)
T d1mz4a_          21 LTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADI  100 (131)
T ss_dssp             CCHHHHHHHHHHHHHHTHHHHGGGCCTTCGGGCCCHHHHHTSSSCCSSHHHHHHHHHSCBCTTSSSBCTTTSCCGGGTTT
T ss_pred             CCHHHHHHHHHHHHHHhHHHcCCCCCCCCCcccccccccccccCcccccccccccccCcccccccchhhhhcccccCCCC
Confidence            345678999999999999999877765444433334443332  3457888888887762                  14


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCC
Q 030717          125 MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGW  164 (172)
Q Consensus       125 MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw  164 (172)
                      ||+|.             .|||+||++|++||.++.   .+.|
T Consensus       101 MP~f~-------------~Lsdeei~av~aYi~~~p~~~~~~W  130 (131)
T d1mz4a_         101 FPKMR-------------NLTEKDLVAIAGHILVEPKILGDKW  130 (131)
T ss_dssp             SGGGT-------------TCCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             CCccc-------------CCCHHHHHHHHHHHHhcCCcccCCC
Confidence            88884             599999999999999985   6677

>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.57  E-value=2e-16  Score=107.18  Aligned_cols=78  Identities=24%  Similarity=0.317  Sum_probs=51.7

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhC------------CCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFG------------KGRMPGFGEKCTP  134 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g------------~~~MP~~~~~~~~  134 (172)
                      ++|+++|++||+ +|++|||.+|.+..+.    .|.+.+..........+....+            ...||+|.     
T Consensus         1 Agd~~~G~~l~~-~Ca~CHg~~G~g~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Mp~~~-----   70 (92)
T d1m70a1           1 AGDAEAGQGKVA-VCGACHGVDGNSPAPN----FPKLAGQGERYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGML-----   70 (92)
T ss_dssp             CCCHHHHHTTCG-GGHHHHCTTSCCCCTT----SCCCTTCCHHHHHHHHHHHHHHHSTTCCTTSSCCCGGGTTTT-----
T ss_pred             CCCHHHhHHHHH-HHHHhCCCcccccchh----hccccchhhHHHHHHHHHhhhhhhhhhhccccccccchHHHH-----
Confidence            368999999996 5999999888754433    3344333111111111222221            12699997     


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717          135 RGQCTFGARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       135 ~~~~~~~~~Lsd~ei~~VaaYl~~~~~  161 (172)
                             ..|||+||++|++||++|+.
T Consensus        71 -------~~Lsd~ei~dl~aYi~sl~~   90 (92)
T d1m70a1          71 -------DPLSDQDLEDIAAYFSSQKG   90 (92)
T ss_dssp             -------TTCCHHHHHHHHHHHHHSCC
T ss_pred             -------hhCCHHHHHHHHHHHHHCCC
Confidence                   78999999999999999864

>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Synechocystis sp., pcc 6803 [TaxId: 1143]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

Probab=99.57  E-value=1.6e-15  Score=109.99  Aligned_cols=88  Identities=20%  Similarity=0.308  Sum_probs=63.5

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCC------------------CC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKG------------------RM  125 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~------------------~M  125 (172)
                      ..+++++|++||+.+|++||+.++.+..+...+..+.....  ...+...+...+.++..                  .|
T Consensus        22 ~~~~~~~Gk~lf~~~Ca~CH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~m  101 (135)
T d1e29a_          22 TARQFTNGQKIFVDTCTQCHLQGKTKTNNNVSLGLADLAGAEPRRDNVLALVEFLKNPKSYDGEDDYSELHPNISRPDIY  101 (135)
T ss_dssp             CHHHHHHHHHHHHHHTHHHHGGGCBSSSSSCSSSHHHHHTSSSCCSSHHHHHHHHHSCBCTTSCSBCTTTSCCTTCTTTC
T ss_pred             CHHHHHHHHHHHHHhhHHhcCCCCCCCCCccccccccccccCCcchhhhHHHhhhcccchhhhhhhHHHhhccccCCCCC
Confidence            45689999999999999999877665555444444444332  34467788887765421                  34


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh--hCCCCC
Q 030717          126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA--DQGWPK  166 (172)
Q Consensus       126 P~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~--~~gw~~  166 (172)
                      |.+             ..|||+||++|++||++++  .++|.+
T Consensus       102 p~~-------------~~Lsdedi~~vaaYi~~qp~~~~~wGg  131 (135)
T d1e29a_         102 PEM-------------RNYTEDDIFDVAGYTLIAPKLDERWGG  131 (135)
T ss_dssp             GGG-------------TTCCHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred             Ccc-------------CCCCHHHHHHHHHHHHhccccCCCCCC
Confidence            444             5799999999999999985  788964

>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Arthrospira maxima [TaxId: 129910]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Arthrospira maxima [TaxId: 129910]

Probab=99.55  E-value=2.8e-15  Score=107.46  Aligned_cols=88  Identities=20%  Similarity=0.344  Sum_probs=61.8

Q ss_pred             CchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCC------------------C
Q 030717           65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKG------------------R  124 (172)
Q Consensus        65 a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~------------------~  124 (172)
                      ....++++|++||+.+|++||+.++.+..++..+..+.....  ...+...+...+.++..                  .
T Consensus        19 ~~~~~~~~G~~lf~~~Ca~CH~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (129)
T d1f1ca_          19 LSLKEIKKGQQVFNAACAQCHALGVTRTNPDVNLSPEALALATPPRDNIAALVDYIKNPTTYDGFVEISELHPSLKSSDI   98 (129)
T ss_dssp             CCHHHHHHHHHHHHHHTHHHHGGGCCTTCSSSCSSHHHHHTSSSCCCSHHHHHHHHHSCBCTTSCSBCTTTSCSTTCTTT
T ss_pred             CCHHHHHHHHHHHHHhhHHHcCCCCCCCCCccccccccccccCCCccccchhhhhhcCcccccccccceeecccccCCCC
Confidence            345678999999999999999977665544443333332222  23456677777666521                  4


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCCC
Q 030717          125 MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGWP  165 (172)
Q Consensus       125 MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw~  165 (172)
                      ||.|             ..|||+|+++|++||+++.   +++|.
T Consensus        99 mp~~-------------~~Lsdedi~ai~aYi~~~p~~~~~~wg  129 (129)
T d1f1ca_          99 FPKM-------------RNISEDDLYNVAGYILLQPKVRGEQWG  129 (129)
T ss_dssp             CGGG-------------SSCCHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCcc-------------ccCCHHHHHHHHHHHHHcccccCCCCC
Confidence            6666             4799999999999999985   77773

>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.54  E-value=4.4e-16  Score=104.87  Aligned_cols=75  Identities=27%  Similarity=0.363  Sum_probs=53.6

Q ss_pred             hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHH---HHHhCCC------CCCCCCCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYH---VTYFGKG------RMPGFGEKCTPRGQ  137 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~---~i~~g~~------~MP~~~~~~~~~~~  137 (172)
                      ++|+++|+++|+ +|++|||.+|.+..+.    .|.|++.   ....+..   .+++|..      .|+.+.        
T Consensus         1 AgD~~~Gk~l~~-~Ca~CHg~~G~g~~~~----~P~L~g~---~~~y~~~~l~~~~~g~r~~~~~~~m~~~~--------   64 (86)
T d1cnoa_           1 AGDIEAGKAKAA-VCAACHGQNGISQVPI----YPNLAGQ---KEQYLVAALKAYKAGQRQGGQAPVMQGQA--------   64 (86)
T ss_dssp             CCCHHHHHHHGG-GTHHHHCTTSCCSSTT----SCCCTTC---CHHHHHHHHHHHHTTCBCSTTHHHHHHHH--------
T ss_pred             CCCHHHhHHHHH-HHHHhcCccccccccc----Ccccccc---hHHHHHHHHHHHHhccccCCcchhhHHHH--------
Confidence            368899999995 6999999988754332    5677655   3443333   3455543      455554        


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhh
Q 030717          138 CTFGARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       138 ~~~~~~Lsd~ei~~VaaYl~~~~~  161 (172)
                          ..|||+||++|++||.+|..
T Consensus        65 ----~~Lsd~di~~laaYi~slp~   84 (86)
T d1cnoa_          65 ----TALSDADIANLAAYYASNPA   84 (86)
T ss_dssp             ----TTCCHHHHHHHHHHHHHSCT
T ss_pred             ----ccCCHHHHHHHHHHHHhCCC
Confidence                68999999999999999854

>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.54  E-value=6.3e-15  Score=109.18  Aligned_cols=81  Identities=19%  Similarity=0.260  Sum_probs=60.0

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC-CCCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN-GVDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCTFGAR  143 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~-~~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~~~~~  143 (172)
                      ....+++|++||+.+|++|||.+|.|. .++.+.. ..+.+ ...+...++..|.+|. +.||++.            ..
T Consensus        42 d~~~v~~G~~lf~~~Ca~CHG~~g~G~-~~P~l~~-~~~~~~~~~~~~~i~~~i~~G~~~~Mp~~~------------~~  107 (147)
T d2gc4d1          42 DPEILPEAEELYAGMCSGCHGHYAEGK-IGPGLND-AYWTYPGNETDVGLFSTLYGGATGQMGPMW------------GS  107 (147)
T ss_dssp             CTTTHHHHHHHHHHHTHHHHCTTSSCS-SSCCCSS-SCCSSGGGGSHHHHHHHHHHCCSTTCCCCT------------TT
T ss_pred             CHHHHHHHHHHHHHhcccccCcCCCCC-CcccCCC-chhhhhhhhHHHHHHHHHHhhccccccccc------------cC
Confidence            445589999999999999999887652 2222221 11211 1235678899999996 4799986            78


Q ss_pred             CCHHHHHHHHHHHHhhh
Q 030717          144 LQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       144 Lsd~ei~~VaaYl~~~~  160 (172)
                      ||++||++|++||+++.
T Consensus       108 Ls~~ei~~lvaYi~sl~  124 (147)
T d2gc4d1         108 LTLDEMLRTMAWVRHLY  124 (147)
T ss_dssp             SCHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999999999874

>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.54  E-value=2.3e-15  Score=100.56  Aligned_cols=72  Identities=25%  Similarity=0.481  Sum_probs=54.0

Q ss_pred             HhHHHHHHcc-CccccCCCCCCCCCCCCccchhhhcC---CCCCHHHHHHHHHhCCC------CCCCCCCCCCCCCCCCC
Q 030717           71 QKGVSLFRQA-CIGCHDGGGNVIQPGATLFLKDLQRN---GVDTEDEIYHVTYFGKG------RMPGFGEKCTPRGQCTF  140 (172)
Q Consensus        71 ~~G~~lf~~~-C~~CHg~~g~~~~~~~~~~~p~l~~~---~~~~~~~l~~~i~~g~~------~MP~~~~~~~~~~~~~~  140 (172)
                      ++|++||..+ |++||+.++.+.++.    ++.+...   ...+.+.+...+++|..      .||++            
T Consensus         1 E~Gk~l~~~~~C~~CH~~~~~g~gp~----~~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~Mp~~------------   64 (82)
T d1cora_           1 EDGEALFKSKPCAACHSIDAKLVGPA----FKEVAAKYAGQDGAADLLAGHIKNGSQGVWGPIPMPPN------------   64 (82)
T ss_dssp             CHHHHHHHHSTHHHHCCSSSCSSSCC----HHHHHHHSTTCTTHHHHHHHHHHSCBCSSSSSSCBCCC------------
T ss_pred             CchHHHHhhCccHHHhCCcccCcCCc----chhhhhhccccchhHHHHHHHHhccccccccccccccc------------
Confidence            4799999876 999999887754322    4444432   23456778999999843      68877            


Q ss_pred             CCCCCHHHHHHHHHHHHhhh
Q 030717          141 GARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       141 ~~~Lsd~ei~~VaaYl~~~~  160 (172)
                        .|||+|+++|++||.+++
T Consensus        65 --~lsdeei~~la~Yi~SlK   82 (82)
T d1cora_          65 --PVTEEEAKILAEWILSQK   82 (82)
T ss_dssp             --SCCHHHHHHHHHHHHSCC
T ss_pred             --CCCHHHHHHHHHHHHhcC
Confidence              399999999999999874

>d2c8sa1 a.3.1.1 (A:24-172) Cytochrome c-L (MoxG) {Methylobacterium extorquens [TaxId: 408]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c-L (MoxG)
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.53  E-value=6.7e-15  Score=109.14  Aligned_cols=82  Identities=17%  Similarity=0.244  Sum_probs=59.8

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCTFGARL  144 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~~~~~L  144 (172)
                      ....+++|++||..+|++|||.+|.|.... .+..+........+...+++.|.+|. +.||+|+            ..|
T Consensus        27 d~~~v~~G~~ly~~~Ca~CHg~~g~G~~~~-~~~~~~~~~~~~~~~~~~~~~i~~G~~~~MP~~~------------~~L   93 (149)
T d2c8sa1          27 DKSCLRNGESLFATSCSGCHGHLAEGKLGP-GLNDNYWTYPSNTTDVGLFATIFGGANGMMGPHN------------ENL   93 (149)
T ss_dssp             CHHHHHHHHHHHHHHTHHHHCTTSSCSSSC-CSSSSCCSSGGGGSHHHHHHHHHTCTTSSSCSCC------------CCS
T ss_pred             CHHHHHHHHHHHHHhCccccCCCCCCCccc-CCCCcccccccchhhhHHHHHHhccccccccccc------------cCC
Confidence            344578999999999999999887753322 21122211111235677889999995 5899997            789


Q ss_pred             CHHHHHHHHHHHHhhh
Q 030717          145 QDEDIKLLAQFVKSQA  160 (172)
Q Consensus       145 sd~ei~~VaaYl~~~~  160 (172)
                      |++||++|++||+++.
T Consensus        94 sdeei~~ivaYvr~l~  109 (149)
T d2c8sa1          94 TPDEMLQTIAWIRHLY  109 (149)
T ss_dssp             CHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999999873

>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Desulfovibrio vulgaris, different strains [TaxId: 881]

Probab=99.52  E-value=1.3e-15  Score=100.85  Aligned_cols=72  Identities=25%  Similarity=0.508  Sum_probs=48.0

Q ss_pred             hHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCH----HHHHHHHHhC--CCCCCCCCCCCCCCCCCCCCCCCC
Q 030717           72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTE----DEIYHVTYFG--KGRMPGFGEKCTPRGQCTFGARLQ  145 (172)
Q Consensus        72 ~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~----~~l~~~i~~g--~~~MP~~~~~~~~~~~~~~~~~Ls  145 (172)
                      +|++||+ +|++|||.+|.+.....   .|.|.+......    ..+...++.+  ...||+|.            ..||
T Consensus         2 ~G~~ly~-~Ca~CHG~~G~g~~~~~---~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Mp~~~------------~~Ls   65 (79)
T d1c53a_           2 DGAALYK-SCVGCHGADGSKQAMGV---GHAVKGQKADELFKKLKGYADGSYGGEKKAVMTNLV------------KRYS   65 (79)
T ss_pred             CcHHHHH-HHHHhCCCccccccccc---CccccccchHHHHHHHHHHHHHHHhccchhccHHHH------------hcCC
Confidence            6999995 69999999877543322   455544321111    2222223333  23799997            7899


Q ss_pred             HHHHHHHHHHHHhh
Q 030717          146 DEDIKLLAQFVKSQ  159 (172)
Q Consensus       146 d~ei~~VaaYl~~~  159 (172)
                      |+||++|++||.++
T Consensus        66 d~ei~~l~aYi~sL   79 (79)
T d1c53a_          66 DEEMKAMADYMSKL   79 (79)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999875

>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.51  E-value=7.8e-16  Score=102.52  Aligned_cols=73  Identities=19%  Similarity=0.284  Sum_probs=50.9

Q ss_pred             HHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCC---CCCCCCCCCCCCCCCCCCCCCCHHHH
Q 030717           73 GVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKG---RMPGFGEKCTPRGQCTFGARLQDEDI  149 (172)
Q Consensus        73 G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~---~MP~~~~~~~~~~~~~~~~~Lsd~ei  149 (172)
                      |.++|..+|++|||.+|.+..+.    .|.|.+..........+.++.|..   .||+|.            ..|||+||
T Consensus         3 ~~~l~~~~Ca~CHG~~G~g~~~~----~p~l~~~~~~~~~~~l~~~~~g~~~~~~M~~~~------------~~Lsd~ei   66 (80)
T d1fcdc1           3 TAEMLTNNCAGCHGTHGNSVGPA----SPSIAQMDPMVFVEVMEGFKSGEIASTIMGRIA------------KGYSTADF   66 (80)
T ss_dssp             CHHHHHHTTTTTSCGGGCCCSSS----SCCCSSCCHHHHHHHHHHHHHTCSCCSSHHHHH------------TTSCHHHH
T ss_pred             hHHHHHHHHHHhCcCcccCcccc----cchhhhhhHHHHHHHHHHHHHhhhhhhhHHHHH------------ccCCHHHH
Confidence            56788899999999887754332    566655422122223334455543   699987            78999999


Q ss_pred             HHHHHHHHhhhh
Q 030717          150 KLLAQFVKSQAD  161 (172)
Q Consensus       150 ~~VaaYl~~~~~  161 (172)
                      ++|++||.+|+.
T Consensus        67 ~~la~Y~~sq~~   78 (80)
T d1fcdc1          67 EKMAGYFKQQTY   78 (80)
T ss_dssp             HHHHHHHHTSCC
T ss_pred             HHHHHHHHhCCC
Confidence            999999999864

>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.50  E-value=8.6e-15  Score=97.79  Aligned_cols=71  Identities=27%  Similarity=0.474  Sum_probs=53.3

Q ss_pred             hHHHHHHcc-CccccCCCCCCCCCCCCccchhhhc---CCCCCHHHHHHHHHhCCC------CCCCCCCCCCCCCCCCCC
Q 030717           72 KGVSLFRQA-CIGCHDGGGNVIQPGATLFLKDLQR---NGVDTEDEIYHVTYFGKG------RMPGFGEKCTPRGQCTFG  141 (172)
Q Consensus        72 ~G~~lf~~~-C~~CHg~~g~~~~~~~~~~~p~l~~---~~~~~~~~l~~~i~~g~~------~MP~~~~~~~~~~~~~~~  141 (172)
                      .|+.||+.+ |++||+.++.+.++  .  ++.+..   ....+.+.|...|++|..      .||+|.            
T Consensus         2 dg~~Lf~~~gC~~CH~~~g~~~gP--~--~~~i~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~MP~~~------------   65 (82)
T d351ca_           2 DPEVLFKNKGCVACHAIDTKMVGP--A--YKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPNA------------   65 (82)
T ss_dssp             CHHHHHHHTTGGGTBCSSSBSSSC--C--HHHHHHHHTTCTTHHHHHHHHHHHCBCSSSSSSCBCCCS------------
T ss_pred             CHHHHHhhCCchhhcCCcccCCCC--c--chhHHHhcccchhhHHHHHHHHHcccccccccccccccC------------
Confidence            589999876 99999988764322  2  444432   123357789999999843      599883            


Q ss_pred             CCCCHHHHHHHHHHHHhhh
Q 030717          142 ARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~  160 (172)
                        |||+|+++|++||++++
T Consensus        66 --lsd~ei~~la~Yi~SlK   82 (82)
T d351ca_          66 --VSDDEAQTLAKWVLSQK   82 (82)
T ss_dssp             --CCHHHHHHHHHHHHTTC
T ss_pred             --CCHHHHHHHHHHHHhcC
Confidence              99999999999999874

>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopila globiformis [TaxId: 1071]

Probab=99.43  E-value=5.3e-14  Score=98.70  Aligned_cols=87  Identities=17%  Similarity=0.254  Sum_probs=55.3

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCCCCCCCccc---------------hhhhc-CCCCCHHHHHHHHHhCCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFL---------------KDLQR-NGVDTEDEIYHVTYFGKGRMPGFG  129 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~---------------p~l~~-~~~~~~~~l~~~i~~g~~~MP~~~  129 (172)
                      .++|+++|++||+++|++||...+.+...|+.+..               +.+.. ...++.+.|...+.+++..||+-.
T Consensus         3 p~gD~~~G~~lF~~~C~~CH~~~~~~~~~GP~L~gi~~R~~g~~~~~~ys~~l~~~~~~~~~~~L~~~l~~P~~~~pgt~   82 (105)
T d1hroa_           3 PPGDPVEGKHLFHTICITCHTDIKGANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPGTK   82 (105)
T ss_dssp             CCCCHHHHHHHHTTTGGGTCCSSTTCBSSSCCCTTCTTCBTTCSTTBCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCC
T ss_pred             CCcCHHHHHHHHHHhhHHhCCCCCCCCccccccchhcccccccccCcccCHHHHhccccccHHHHHHHHHCccccCCCCC
Confidence            35789999999999999999754322222332210               11111 124688889988888754333322


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          130 EKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       130 ~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                      |   |     |.+.++++|++||++||.+++
T Consensus        83 M---~-----~~gl~~~~~~~dliaYL~sLK  105 (105)
T d1hroa_          83 M---G-----YPGQPDPQKRADIIAYLETLK  105 (105)
T ss_dssp             C---C-----CCCCCCHHHHHHHHHHHTTCC
T ss_pred             C---C-----CCCCCCHHHHHHHHHHHHHcC
Confidence            1   0     015678999999999999874

>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Bluefin tuna (Thunnus thynnus) [TaxId: 8237]

Probab=99.41  E-value=1.8e-13  Score=93.88  Aligned_cols=80  Identities=20%  Similarity=0.204  Sum_probs=50.7

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCC-CCCCCcc---------------chhhhc-CCCCCHHHHHHHHHhC-----CCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVI-QPGATLF---------------LKDLQR-NGVDTEDEIYHVTYFG-----KGRM  125 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~-~~~~~~~---------------~p~l~~-~~~~~~~~l~~~i~~g-----~~~M  125 (172)
                      +|+++|++||+++|++||..+.... ..++.+.               .+.+.. ...++.+.+...+.++     ...|
T Consensus         1 GD~~~G~~lf~~~C~~CH~~~~~~~~~~g~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~M   80 (103)
T d1lfma_           1 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKM   80 (103)
T ss_dssp             CCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCCTTCCCCHHHHHCCCBCSHHHHHHHHHCHHHHSTTCSC
T ss_pred             CCHHHHHHHHHccChhccCcccccCCCccccccccccccccccccccccHHHhhcCcccCHHHHHHHHhCcccccCCCCC
Confidence            4789999999999999997542211 1111110               011111 1235677777776654     2356


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       126 P~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                      |.+             ..||++|++||++||+++.
T Consensus        81 ~~~-------------~~ls~~ei~dviAYLkt~s  102 (103)
T d1lfma_          81 IFA-------------GIKKKGERQDLVAYLKSAT  102 (103)
T ss_dssp             CCC-------------CCCSHHHHHHHHHHHHHHC
T ss_pred             CCC-------------CCCCHHHHHHHHHHHHHhc
Confidence            654             5789999999999999863

>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Thermus thermophilus [TaxId: 274]

Probab=99.41  E-value=2.6e-14  Score=103.26  Aligned_cols=76  Identities=18%  Similarity=0.322  Sum_probs=52.2

Q ss_pred             hHHHHHHccCccccCCCCCCCCCCCCccchhhh--cCCCCCHHHHHHHHHhCCC-----------CCCCCCCCCCCCCCC
Q 030717           72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQ--RNGVDTEDEIYHVTYFGKG-----------RMPGFGEKCTPRGQC  138 (172)
Q Consensus        72 ~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~--~~~~~~~~~l~~~i~~g~~-----------~MP~~~~~~~~~~~~  138 (172)
                      +|++||+ +|++|||.+|.|..+..+...+..+  .....+.+.+.+.+.+|..           .||++.         
T Consensus         3 ~G~~lY~-~Ca~CHG~~G~G~~~~~p~l~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~g~~~~~m~~~~---------   72 (131)
T d1c52a_           3 DGAKIYA-QCAGCHQQNGQGIPGAFPPLAGHVAEILAKEGGREYLILVLLYGLQGQIEVKGMKYNGVMSSF---------   72 (131)
T ss_dssp             CHHHHTH-HHHHHHCTTSCCBTTTBCCCTTHHHHHHTSTTHHHHHHHHHHHCEEEEEEETTEEEEEEECCC---------
T ss_pred             chHHHHH-HHHHHcCCCCCCCCCCCCccCCCccccccccCCHHHHHHHHHcccccccccCCcccccccccc---------
Confidence            6999995 7999999988764432222111111  1223467788888888731           355554         


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh
Q 030717          139 TFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       139 ~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                         ..|||+||++|++||++..
T Consensus        73 ---~~LsD~eI~av~~YIr~~~   91 (131)
T d1c52a_          73 ---AQLKDEEIAAVLNHIATAW   91 (131)
T ss_dssp             ---TTSCHHHHHHHHHHHHHTT
T ss_pred             ---cCCCHHHHHHHHHHHHHHc
Confidence               6799999999999999874

>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.41  E-value=6.6e-14  Score=93.21  Aligned_cols=69  Identities=26%  Similarity=0.382  Sum_probs=51.2

Q ss_pred             HHHHccCccccCCCCCCCCCCCCccchhhhc---CCCCCHHHHHHHHHhCCC------CCCCCCCCCCCCCCCCCCCCCC
Q 030717           75 SLFRQACIGCHDGGGNVIQPGATLFLKDLQR---NGVDTEDEIYHVTYFGKG------RMPGFGEKCTPRGQCTFGARLQ  145 (172)
Q Consensus        75 ~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~---~~~~~~~~l~~~i~~g~~------~MP~~~~~~~~~~~~~~~~~Ls  145 (172)
                      -+++.+|++||+.++.+..+.    ++.+..   ....+.+.|++.+++|..      .||+|.             .||
T Consensus         4 L~~~~~C~~CH~~~~~g~gP~----~~~i~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~Mp~~~-------------~Ls   66 (81)
T d1a56a_           4 LAKKNNCIACHQVETKVVGPA----LKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNV-------------NVS   66 (81)
T ss_dssp             HHHHHSHHHHBCSSCBSSSCC----HHHHHHHHTTSSSHHHHHHHHHHHCBSSSSSSCCBCSCC-------------SSS
T ss_pred             HHHcCCcHhhCCCcCcCcccc----ccchhhhccccccchhHHHHHHhcccccccCCccccccc-------------CCC
Confidence            344679999999987754322    445542   223467789999999853      799984             599


Q ss_pred             HHHHHHHHHHHHhhh
Q 030717          146 DEDIKLLAQFVKSQA  160 (172)
Q Consensus       146 d~ei~~VaaYl~~~~  160 (172)
                      |+||++|++||.+++
T Consensus        67 d~ei~~l~~Yl~slk   81 (81)
T d1a56a_          67 DADAKALADWILTLK   81 (81)
T ss_dssp             SHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999999874

>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum sulfidophilum [TaxId: 35806]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome SoxX
species: Rhodovulum sulfidophilum [TaxId: 35806]

Probab=99.38  E-value=2.3e-13  Score=98.71  Aligned_cols=97  Identities=14%  Similarity=0.112  Sum_probs=60.5

Q ss_pred             cCchhhHHhHHHHHHc----cCccccCCCCCCCCCCCCccchhhhcCC-CCCHHHHHHHHHhCC-----CCCCCCCCCC-
Q 030717           64 LAQTVDIQKGVSLFRQ----ACIGCHDGGGNVIQPGATLFLKDLQRNG-VDTEDEIYHVTYFGK-----GRMPGFGEKC-  132 (172)
Q Consensus        64 ~a~~~d~~~G~~lf~~----~C~~CHg~~g~~~~~~~~~~~p~l~~~~-~~~~~~l~~~i~~g~-----~~MP~~~~~~-  132 (172)
                      .+..+|+++|++||..    +|.+||..++.+.........|+|.+.+ ..+.+.|...|.++.     ..||.+...- 
T Consensus        21 ~~~~GDa~~G~~lF~~~~~~~C~aCH~~~~~g~~~~~g~~gP~L~~ig~r~~~~~l~~~i~~p~~~~~~~~~~~~~~~~~  100 (138)
T d1h32b_          21 TDAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAARYPEAMIRGILVNSKNVFPETVMPAYYRVEG  100 (138)
T ss_dssp             BSSCCCHHHHHHHHHCTTTTCGGGTCCCTTC---CCCCSSSCCCTTHHHHSCHHHHHHHHHCHHHHSTTCSSCCTTCCSC
T ss_pred             cCCCCCHHHHHHHHhccCCCCcccCCCCCCcCcccccCCcCCccccccccCCHHHHHHHHhCHHhcCCCcccccceeccc
Confidence            3455789999999964    5999998765543222222367776543 347888888876652     2455442000 


Q ss_pred             ---------CCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          133 ---------TPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       133 ---------~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                               ....+-.+...||++||+||++||.++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~Lt~~ei~dlvAYL~tL~  137 (138)
T d1h32b_         101 FNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLT  137 (138)
T ss_dssp             CSSBBSTTSCCBCCSCCCCSSCHHHHHHHHHHHTTCC
T ss_pred             cccccccccccccccccccCCCHHHHHHHHHHHHHcc
Confidence                     0001112346799999999999999874

>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Hydrogenobacter thermophilus [TaxId: 940]

Probab=99.38  E-value=3.6e-13  Score=89.40  Aligned_cols=71  Identities=23%  Similarity=0.337  Sum_probs=50.5

Q ss_pred             HHHHH-ccCccccCCCCCCCCCCCCccchhhhc---CCCCCHHHHHHHHHhCCC----CCCCCCCCCCCCCCCCCCCCCC
Q 030717           74 VSLFR-QACIGCHDGGGNVIQPGATLFLKDLQR---NGVDTEDEIYHVTYFGKG----RMPGFGEKCTPRGQCTFGARLQ  145 (172)
Q Consensus        74 ~~lf~-~~C~~CHg~~g~~~~~~~~~~~p~l~~---~~~~~~~~l~~~i~~g~~----~MP~~~~~~~~~~~~~~~~~Ls  145 (172)
                      ++||+ .+|++||+.++.+.+  +.  ++.+..   ....+.+.|.+.|++|..    .||...            ..||
T Consensus         2 ~~L~~~~~C~~CH~~~~~g~g--P~--~~~l~~~~~~~~~~~~~l~~~i~~p~~~~~~~~~~~~------------~~ls   65 (80)
T d1ynra1           2 EQLAKQKGCMACHDLKAKKVG--PA--YADVAKKYAGRKDAVDYLAGKIKKGGSGVWGSVPMPP------------QNVT   65 (80)
T ss_dssp             HHHHHHHTGGGTCCSSSCSSS--CC--HHHHHHHHTTCTTHHHHHHHHHHHCBCSSSCSSCBCC------------CSCC
T ss_pred             HHHHHcCCcHhhCCCCCCCCC--CC--ccchhhhccccchhHHHHHHHHHcccccccccccccc------------ccCC
Confidence            57885 479999998876432  22  455543   223356778999999854    355444            5799


Q ss_pred             HHHHHHHHHHHHhhh
Q 030717          146 DEDIKLLAQFVKSQA  160 (172)
Q Consensus       146 d~ei~~VaaYl~~~~  160 (172)
                      |+||++|++||.+++
T Consensus        66 d~ei~~l~~yi~sLk   80 (80)
T d1ynra1          66 DAEAKQLAQWILSIK   80 (80)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999999874

>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Rice embryos (Oryza sativa) [TaxId: 4530]

Probab=99.37  E-value=8.3e-13  Score=93.24  Aligned_cols=84  Identities=17%  Similarity=0.186  Sum_probs=54.6

Q ss_pred             cCchhhHHhHHHHHHccCccccCCCCC-CCCCCCCccc---------------hhhhc-CCCCCHHHHHHHHHhCCC---
Q 030717           64 LAQTVDIQKGVSLFRQACIGCHDGGGN-VIQPGATLFL---------------KDLQR-NGVDTEDEIYHVTYFGKG---  123 (172)
Q Consensus        64 ~a~~~d~~~G~~lf~~~C~~CHg~~g~-~~~~~~~~~~---------------p~l~~-~~~~~~~~l~~~i~~g~~---  123 (172)
                      .+.++|+++|++||+.+|++||..+.. +...|+.+..               +.+.. ...++.+.|...+.++..   
T Consensus         5 ~~p~gD~~~G~~lF~~~CaaCH~i~~~~~~~~GP~L~gi~~r~~~~~~~~~y~~~~~~~~~~~~~~~L~~~l~~P~~~~~   84 (111)
T d1ccra_           5 EAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPKKYIP   84 (111)
T ss_dssp             GSCCCCHHHHHHHHHHHTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHCCBCSHHHHHHHHHCHHHHST
T ss_pred             cCCCCCHHHHHHHHHhcCHhhCCcCCCCcchhHHHHHhhhcccccccccccccHHHHhccccCCHHHHHHHHHCccccCC
Confidence            345788999999999999999975421 1112322210               01111 124578888888876633   


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          124 -RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       124 -~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                       .|++|.            ..++++|+.+|++||++.
T Consensus        85 g~~M~~~------------~~~~~~d~~dliaYLk~~  109 (111)
T d1ccra_          85 GTKMVFP------------GLKKPQERADLISYLKEA  109 (111)
T ss_dssp             TCCCCCC------------CCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCC------------CCCCHHHHHHHHHHHHHh
Confidence             333443            567999999999999975

>d1m70a2 a.3.1.4 (A:93-190) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.34  E-value=7.9e-14  Score=96.54  Aligned_cols=76  Identities=25%  Similarity=0.384  Sum_probs=55.3

Q ss_pred             chhhHHhHHHHHHc--------cCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHH---HhCCC-------CCCC
Q 030717           66 QTVDIQKGVSLFRQ--------ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT---YFGKG-------RMPG  127 (172)
Q Consensus        66 ~~~d~~~G~~lf~~--------~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i---~~g~~-------~MP~  127 (172)
                      .++.+++|++||+.        .|++|||.+|.+....   ..|.|.+.   +.+.|...+   ++|..       .||+
T Consensus         4 d~a~~~~G~~l~~~G~~~~~i~~C~~CHg~~G~g~~~~---~~P~L~G~---~~~Yl~~qL~~~~~g~r~~~~~~~~M~~   77 (98)
T d1m70a2           4 DPALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLA---GFPKLGGQ---HAAYTAKQLTDFREGNRTNDGDTMIMRG   77 (98)
T ss_dssp             CHHHHHHHHHHHHHCBGGGTBCCSHHHHCTTSCCBGGG---TBCCCTTC---CHHHHHHHHHHHHHTSCCTTTTTCHHHH
T ss_pred             CHHHHHHHHHHHHcCCcccCCchhhhcCCCccccCcCC---CCCccccc---hHHHHHHHHHHHHhccccCCchhhhHHH
Confidence            44568999999965        5999999988753221   25677654   566666544   44532       4888


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       128 ~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                      +.            ..|||+||.+|++||.++
T Consensus        78 ~~------------~~lsd~di~~la~YiasL   97 (98)
T d1m70a2          78 VA------------AKLSNKDIEALSSYIQGL   97 (98)
T ss_dssp             HH------------TTCCHHHHHHHHHHHHTC
T ss_pred             HH------------HhCCHHHHHHHHHHHHHc
Confidence            86            789999999999999876

>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=99.32  E-value=9.1e-14  Score=92.50  Aligned_cols=69  Identities=16%  Similarity=0.150  Sum_probs=46.9

Q ss_pred             HccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCC-------CCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 030717           78 RQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKG-------RMPGFGEKCTPRGQCTFGARLQDEDIK  150 (172)
Q Consensus        78 ~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~-------~MP~~~~~~~~~~~~~~~~~Lsd~ei~  150 (172)
                      +++|++|||.+|.+....   ..|.|.+.............+.|..       .||+|.            ..|||+||+
T Consensus         2 a~~Ca~CHG~~G~G~~~~---~~P~l~g~~~~~~~~~~~~~~~g~r~~~~~~~~M~~~~------------~~LSd~eI~   66 (82)
T d1h1oa1           2 SSDCMVCHGMTGRDTLYP---IVPRLAGQHKSYMEAQLKAYKDHSRADQNGEIYMWPVA------------QALDSAKIT   66 (82)
T ss_dssp             GGGTHHHHCBTTBCCSST---TSCCCTTCCHHHHHHHHHHHHTTCCCCHHHHHHTHHHH------------HTCCHHHHH
T ss_pred             cchhHHhCCCcCCCCccc---ccccccCCcHHHHHHHHHHhhhhhhhcccccccchHHH------------hhCCHHHHH
Confidence            478999999988753322   2566765522222223334444432       499997            789999999


Q ss_pred             HHHHHHHhhhh
Q 030717          151 LLAQFVKSQAD  161 (172)
Q Consensus       151 ~VaaYl~~~~~  161 (172)
                      +|++||.+++.
T Consensus        67 ~la~Yi~sl~p   77 (82)
T d1h1oa1          67 ALADYFNAQKP   77 (82)
T ss_dssp             HHHHHHHHCSS
T ss_pred             HHHHHHHhCCC
Confidence            99999999863

>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=1.2e-12  Score=92.16  Aligned_cols=87  Identities=22%  Similarity=0.327  Sum_probs=55.2

Q ss_pred             chhhHHhHHHHHHccCccccCCCCCCC-CCCCCccc---------------hhhhc-CCCCCHHHHHHHHHhCCCCCCCC
Q 030717           66 QTVDIQKGVSLFRQACIGCHDGGGNVI-QPGATLFL---------------KDLQR-NGVDTEDEIYHVTYFGKGRMPGF  128 (172)
Q Consensus        66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~-~~~~~~~~---------------p~l~~-~~~~~~~~l~~~i~~g~~~MP~~  128 (172)
                      .++|+++|++||..+|++||..+..+. ..|+.+..               +.+.. ...|+.+.|...+.+++..+|+.
T Consensus         4 ~~gDa~~G~~lF~~~C~~CH~i~~~~~~~~GP~L~gi~~r~~~~~~~~~ys~~l~~~~~~W~~~~L~~~l~~P~~~~pgt   83 (108)
T d1ycca_           4 KAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPKKYIPGT   83 (108)
T ss_dssp             CCCCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTC
T ss_pred             CccCHHHHHHHHHHhChhhCcCCCCCCcccccccCCcccCcccccCCcccCHHHhhccccCCHHHHHHHHHchhccCCCC
Confidence            467899999999999999997542211 12222210               01111 12457888999888875544432


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       129 ~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                      .|   +     |.+.++++|+++|++||+++.
T Consensus        84 ~M---~-----~~gi~~~~d~~~liaYLks~s  107 (108)
T d1ycca_          84 KM---A-----FGGLKKEKDRNDLITYLKKAC  107 (108)
T ss_dssp             CC---C-----CCCCCCHHHHHHHHHHHHHHC
T ss_pred             CC---C-----CCCCCCHHHHHHHHHHHHHhc
Confidence            21   0     115678999999999999864

>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.29  E-value=1.4e-12  Score=91.15  Aligned_cols=79  Identities=19%  Similarity=0.264  Sum_probs=49.5

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCC-CCCCccc---------------hh---hhc-CCCCCHHHHHHHHHhCCC----
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQ-PGATLFL---------------KD---LQR-NGVDTEDEIYHVTYFGKG----  123 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~-~~~~~~~---------------p~---l~~-~~~~~~~~l~~~i~~g~~----  123 (172)
                      +|+++|++||+ +|++||..+..+.. .|+.+..               ..   +.. ...++.+.|...+.++..    
T Consensus         2 GDa~~G~~lf~-~C~~CH~~~~~~~~~~Gp~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~p~~~~~~   80 (112)
T d3c2ca_           2 GDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKAFVLE   80 (112)
T ss_dssp             CCHHHHHHHGG-GGTTTCCCSTTCCCSSSCCCTTCTTSBSSCCTTSCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHHhCCCcCCCCccccccccCCccccccccccccccHHHHHhhhccccCCHHHHHHHHHCcHHHhcc
Confidence            68999999995 69999986532211 1221110               00   011 124678888887766522    


Q ss_pred             --------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          124 --------RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       124 --------~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                              .|.++             ..||++||.||++||++++
T Consensus        81 ~~~~~~~~~~m~~-------------~~ls~qdi~divAYL~tLK  112 (112)
T d3c2ca_          81 KSGDPKAKSKMTF-------------KLTKDDEIENVIAYLKTLK  112 (112)
T ss_dssp             HHCCTTCCCSCCC-------------CCCCHHHHHHHHHHHTTCC
T ss_pred             cccCCCCCCCCCC-------------CCCCHHHHHHHHHHHHhcC
Confidence                    22233             4799999999999999874

>d1h1oa2 a.3.1.4 (A:94-183) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=99.29  E-value=2.9e-13  Score=92.47  Aligned_cols=73  Identities=21%  Similarity=0.319  Sum_probs=55.2

Q ss_pred             hhhHHhHHHHHHc--------cCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHH---HhCCC---CCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQ--------ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT---YFGKG---RMPGFGEKC  132 (172)
Q Consensus        67 ~~d~~~G~~lf~~--------~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i---~~g~~---~MP~~~~~~  132 (172)
                      .+++++|++||+.        .|++|||.+|.+..     .+|.|.+.   +.+.|.+.+   ++|.+   .|+.+.   
T Consensus         4 ~a~~~~G~~iy~~G~~~~~~~~C~~CHG~~G~g~~-----~~P~LaGq---~~~Yl~~qL~~f~~g~R~~~~M~~~a---   72 (90)
T d1h1oa2           4 HAGAKEGKAIFNQGVTNEQIPACMECHGSDGQGAG-----PFPRLAGQ---RYGYIIQQLTYFHNGTRVNTLMNQIA---   72 (90)
T ss_dssp             CTTHHHHHHHHHHCBGGGTBCCTHHHHCTTSCCBT-----TBCCCTTC---CHHHHHHHHHHHHHTSSCCHHHHHHH---
T ss_pred             hHHHHHHHHHHHcCCcccCCchhhhcCCCccCCCC-----CCCccCCC---CHHHHHHHHHHHHcCCcCchHHHHHH---
Confidence            3567899999964        49999998887431     15778766   566666544   45544   588887   


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          133 TPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       133 ~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                               ..|||+||++|++||.++
T Consensus        73 ---------~~lsd~ei~~la~Y~asL   90 (90)
T d1h1oa2          73 ---------KNITVAQMKDVAAYLSSL   90 (90)
T ss_dssp             ---------TTCCHHHHHHHHHHHHHC
T ss_pred             ---------HhCCHHHHHHHHHHHHhC
Confidence                     789999999999999875

>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.24  E-value=4.8e-12  Score=87.64  Aligned_cols=82  Identities=23%  Similarity=0.291  Sum_probs=53.1

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCcc---------------chhhhcC-CCCCHHHHHHHHHhCCCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLF---------------LKDLQRN-GVDTEDEIYHVTYFGKGRMPGFGEK  131 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~---------------~p~l~~~-~~~~~~~l~~~i~~g~~~MP~~~~~  131 (172)
                      +|+++|++||+ .|.+||..++.. ..|+.+.               .+.+... ..|+.+.|...+.++...||+-.| 
T Consensus         1 AD~~~G~~~f~-~C~~CHs~~~~~-~~GP~L~gi~gr~~~~~~~~~ys~~~~~~~~~w~~~~L~~~l~~P~~~~pgt~M-   77 (99)
T d1ql3a_           1 ADPAAGEKVFG-KCKACHKLDGND-GVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKM-   77 (99)
T ss_dssp             CCHHHHHHHGG-GTTTTCCSSSCC-SSSCCCTTCTTCBTTCSTTCCCCHHHHHHCSBCCHHHHHHHHHCHHHHSTTCSC-
T ss_pred             CCHHHHHHHHH-HHHhhCCcCCCC-CCCCCccCccCCcccccccccccHHHHhcccccCHHHHHHHHhChHhhCCCCCC-
Confidence            47889999996 599999865431 1222211               0111111 256889999999988665554331 


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          132 CTPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       132 ~~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                        +     |.+..+++|+.+|++||+++
T Consensus        78 --~-----~~gl~~~~d~~dliaYLks~   98 (99)
T d1ql3a_          78 --A-----FAGLPKIEDRANLIAYLEGQ   98 (99)
T ss_dssp             --C-----CCCCCCHHHHHHHHHHHHHT
T ss_pred             --C-----CCCCCCHHHHHHHHHHHhhc
Confidence              1     11456899999999999986

>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris [TaxId: 1076]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=99.23  E-value=7.6e-12  Score=87.98  Aligned_cols=79  Identities=18%  Similarity=0.286  Sum_probs=48.8

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCC------------Cc----cchhhhc-CCCCCHHHHHHHHHhCCC-------
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGA------------TL----FLKDLQR-NGVDTEDEIYHVTYFGKG-------  123 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~------------~~----~~p~l~~-~~~~~~~~l~~~i~~g~~-------  123 (172)
                      .|+++|++||+ +|++||..+....++.-            ..    ....+.. ...|+.+.|...+.++..       
T Consensus         1 ~Da~~G~~lF~-~C~aCH~~~~~~~GP~l~gi~~r~~~~~~~~~~~~~~~~~~~~~~~w~~~~L~~~i~~p~~~~~g~~~   79 (114)
T d1i8oa_           1 EDAKAGEAVFK-QCMTCHRADKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKKFLT   79 (114)
T ss_dssp             CCHHHHHHHHH-HHTTTCCSSSCSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHHHH
T ss_pred             CcHHHHHHHHH-HhHHhcCCCCCCCCCCccCccccccccccchhhhhHHHHHhccCcccCHHHHHHHHhCcHhhccCccc
Confidence            37899999996 69999964432221110            00    0011111 135688888887765421       


Q ss_pred             -----------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          124 -----------RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       124 -----------~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                                 .|++|             ..++++||.||++||++++
T Consensus        80 ~~~~~~~~~~~t~M~~-------------~~l~~~di~dliAYL~sLK  114 (114)
T d1i8oa_          80 EKGKADQAVGVTKMTF-------------KLANEQQRKDVVAYLATLK  114 (114)
T ss_dssp             HTTCGGGCCSCCSSCC-------------CCCCHHHHHHHHHHHHTTC
T ss_pred             chhhhhcccCCCcCCc-------------CCCCHHHHHHHHHHHHHcC
Confidence                       22334             4689999999999999874

>d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas viridis [TaxId: 1079]

Probab=99.19  E-value=1.1e-11  Score=87.01  Aligned_cols=86  Identities=20%  Similarity=0.291  Sum_probs=54.5

Q ss_pred             hhHHhHHHHHHccCccccCCCCCC-CCCCCCcc---------------chhhhcC-CCCCHHHHHHHHHhCCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNV-IQPGATLF---------------LKDLQRN-GVDTEDEIYHVTYFGKGRMPGFGE  130 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~-~~~~~~~~---------------~p~l~~~-~~~~~~~l~~~i~~g~~~MP~~~~  130 (172)
                      .|+++|+++|+ +|.+||.....+ ...|+.+.               .+.|... ..|+.+.|...+.++...+|+-.|
T Consensus         1 ~Da~~G~~~F~-~C~~CH~~~~~~~~~~GP~L~gi~gr~~g~~~~~~ys~al~~~~~~w~~~~L~~~l~~P~~~~pGt~M   79 (107)
T d1co6a_           1 QDAASGEQVFK-QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKM   79 (107)
T ss_dssp             CCHHHHHHHHH-HHHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHHTSCCBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred             CcHHHHHHHHH-hccccCccCCCCCCCccccccCccCcccccccccccCHHHhhccccCCHHHHHHHHhChHhhCCCCCC
Confidence            37889999996 699999853111 11122211               0122221 367899999999888654444321


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhC
Q 030717          131 KCTPRGQCTFGARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       131 ~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                         +     |.+..+++|+++|++||.++..+
T Consensus        80 ---~-----~~gl~~~~d~~~liAYL~~l~~~  103 (107)
T d1co6a_          80 ---I-----FAGVKDEQKVSDLIAYIKQFNAD  103 (107)
T ss_dssp             ---C-----CCCCCCHHHHHHHHHHHHTBCTT
T ss_pred             ---C-----CCCCCCHHHHHHHHHHHHHhccc
Confidence               0     11456899999999999988654

>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens [TaxId: 408]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome ch
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.15  E-value=2.7e-11  Score=83.85  Aligned_cols=81  Identities=20%  Similarity=0.284  Sum_probs=51.2

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCCCCCCCcc----------------chhhhc-CCCCCHHHHHHHHHhCCCCCCCCCC
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLF----------------LKDLQR-NGVDTEDEIYHVTYFGKGRMPGFGE  130 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~----------------~p~l~~-~~~~~~~~l~~~i~~g~~~MP~~~~  130 (172)
                      +|+++|++||. +|++||.....+.  |+.+.                -+.+.. ...++.+.|...+.++...||+..|
T Consensus         2 GDa~~G~~lF~-~C~~CH~i~~~~~--GP~L~gi~~r~~g~~~~~~~ys~~~~~~~~~w~~~~L~~~l~~P~~~~pgt~M   78 (99)
T d1qn2a_           2 GDAAAGEKAFA-PCKACHNFEKNGV--GPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPKKKVPGTKM   78 (99)
T ss_dssp             CCHHHHHHHTG-GGGGTCCSSSCSS--SCCCTTCTTSBTTTCTTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred             CCHHHHHHHHH-hHHHHcCCcccCc--CCccccccCCccccccCCccccHHHHhcCccccHHHHHHHHHCccccCCCCCC
Confidence            68899999995 6999998653322  22111                011111 1246888999998887554443221


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          131 KCTPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       131 ~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                         +     |.+..+++|+++|++||+++
T Consensus        79 ---~-----~~gl~~~~d~~dliaYL~T~   99 (99)
T d1qn2a_          79 ---V-----FPGISDPKKVDDIIAYLKTK   99 (99)
T ss_dssp             ---C-----CCCCCCHHHHHHHHHHHHHC
T ss_pred             ---C-----CCCCCCHHHHHHHHHHHccC
Confidence               0     01445689999999999874

>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 1063]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.15  E-value=4.3e-11  Score=84.90  Aligned_cols=21  Identities=10%  Similarity=0.131  Sum_probs=18.4

Q ss_pred             CCCCHHHHHHHHHHHHhhhhC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      ..|+++|+.||++||+++..+
T Consensus       103 ~~l~~~di~DLiAYL~sl~~~  123 (124)
T d1cxca_         103 KLKKEADAHNIWAYLQQVAVR  123 (124)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCC
T ss_pred             CCCCHHHHHHHHHHHHHcCCC
Confidence            369999999999999998654

>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum centenum [TaxId: 34018]

Probab=99.09  E-value=6e-11  Score=84.38  Aligned_cols=79  Identities=19%  Similarity=0.199  Sum_probs=49.5

Q ss_pred             hhHHhHHHHHHccCccccCCCCCC-CCCCCCccc------------------hhhhcC-CCCCHHHHHHHHHhCC-----
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNV-IQPGATLFL------------------KDLQRN-GVDTEDEIYHVTYFGK-----  122 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~-~~~~~~~~~------------------p~l~~~-~~~~~~~l~~~i~~g~-----  122 (172)
                      +|+++|+++|+ +|++||..+..+ ...|+.+..                  ..+... ..|+.+.|...+.++.     
T Consensus         1 GD~~~G~~vF~-~C~~CH~v~~~~~~~iGP~L~gi~~R~~g~~~g~~Ys~~~~~~~~~g~~W~~e~L~~~l~~P~~~i~~   79 (118)
T d1jdla_           1 GDPAKGEAVFK-KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLRK   79 (118)
T ss_dssp             CCHHHHHHHGG-GTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHHhCCcCCCCCCCCCCcccCccCcccCccccccccHHHHHHHhcCccCCHHHHHHHHHCHHHhhcc
Confidence            47899999995 599999854211 112222110                  011111 2467777777665431     


Q ss_pred             -------------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          123 -------------GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       123 -------------~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                                   +.|+.|+             ..+++|+.+|++||+++.
T Consensus        80 ~~~~~~~~~~~~~~~~m~~~-------------l~~~~d~~dliaYL~sl~  117 (118)
T d1jdla_          80 FLADAGHAEQAKGSTKMVFK-------------LPDEQERKDVVAYLKQFS  117 (118)
T ss_dssp             HHHHTTCGGGGSSCCSCCCC-------------CCCHHHHHHHHHHHGGGC
T ss_pred             ccccccccccCCCCCccccc-------------CCCHHHHHHHHHHHHHhC
Confidence                         3577773             568999999999999873

>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.97  E-value=1.2e-10  Score=82.83  Aligned_cols=82  Identities=17%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             hhHHhHHHHHHccCccccCCCCCCC-------CCCCCccc----h-----------hh-----hc-CCCCCHHHHHHHHH
Q 030717           68 VDIQKGVSLFRQACIGCHDGGGNVI-------QPGATLFL----K-----------DL-----QR-NGVDTEDEIYHVTY  119 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~~g~~~-------~~~~~~~~----p-----------~l-----~~-~~~~~~~~l~~~i~  119 (172)
                      +|+++|++||+ +|++||.....+.       ..|+.+..    +           .+     .. ...|+.+.|...+.
T Consensus         2 GDa~~G~~vF~-~C~~CH~~~~~~~~~~~~~~~~GP~L~gi~~r~~~~~~~~~~~~~~~~~~~~~~g~~w~~~~L~~~l~   80 (121)
T d1cota_           2 GDAAKGEKEFN-KCKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEADLIEYVT   80 (121)
T ss_dssp             CCHHHHHHHGG-GTTTTCCEECTTSCEEECCCSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHHCTTCBCCHHHHHHHHH
T ss_pred             CCHHHHHHHHH-hCcccCccCCCCcccccccchhhHHhcCcccccccccccccchHHHHHHHhhccCCCCCHHHHHHHHH
Confidence            68999999995 6999998432110       11211110    0           00     00 12478888888887


Q ss_pred             hCCC--------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717          120 FGKG--------RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       120 ~g~~--------~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~  161 (172)
                      +++.        .+|...|           ..++++|+.||++||+++..
T Consensus        81 ~P~~~i~~~~~~~~~~t~M-----------~~~~~~d~~dliAYLks~~~  119 (121)
T d1cota_          81 DPKPWLVKMTDDKGAKTKM-----------TFKMGKNQADVVAFLAQNSP  119 (121)
T ss_dssp             CHHHHHHHHHTCTTCCCSC-----------CCCCCSCHHHHHHHHHHTCT
T ss_pred             CcHHHhccccCCCCCCCCC-----------CCCCHHHHHHHHHHHHHcCC
Confidence            7633        2333322           45789999999999998754

>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=98.78  E-value=4e-09  Score=74.34  Aligned_cols=19  Identities=37%  Similarity=0.602  Sum_probs=16.4

Q ss_pred             hhHHhHHHHHHccCccccCC
Q 030717           68 VDIQKGVSLFRQACIGCHDG   87 (172)
Q Consensus        68 ~d~~~G~~lf~~~C~~CHg~   87 (172)
                      +|+++|+++|+ +|.+||..
T Consensus         1 GD~a~G~~vf~-~C~~CH~i   19 (116)
T d1vyda_           1 GDAAKGEKEFN-KCKTCHSI   19 (116)
T ss_dssp             CCHHHHHHHGG-GTTTTCCE
T ss_pred             CCHHHHHHHHH-HhHHhCCC
Confidence            47899999995 69999984

>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.14  E-value=2.5e-06  Score=62.93  Aligned_cols=21  Identities=19%  Similarity=0.533  Sum_probs=18.5

Q ss_pred             CCCCHHHHHHHHHHHHhhhhC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      ..||++|+++|++||+++.++
T Consensus       116 ~~Lt~~e~~~LvaFL~tLtd~  136 (160)
T d1nmla2         116 TELNNDEVKSIVAFLKTLTGN  136 (160)
T ss_dssp             CCCCHHHHHHHHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHcCCC
Confidence            569999999999999999643

>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.04  E-value=6.3e-06  Score=60.60  Aligned_cols=21  Identities=19%  Similarity=0.450  Sum_probs=18.8

Q ss_pred             CCCCHHHHHHHHHHHHhhhhC
Q 030717          142 ARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                      ..||++|+++|++||+++.++
T Consensus       118 ~~Ls~~e~~~LvaFL~sLt~~  138 (159)
T d1eb7a2         118 KQLAPDDVENIVAFLHSLSGK  138 (159)
T ss_dssp             SCCCHHHHHHHHHHHHTTCCC
T ss_pred             CCCCHHHHHHHHHHHHhcCCC
Confidence            579999999999999999654

>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.04  E-value=2e-06  Score=57.17  Aligned_cols=65  Identities=17%  Similarity=0.295  Sum_probs=42.2

Q ss_pred             hHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHH
Q 030717           72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMP-GFGEKCTPRGQCTFGARLQDEDIK  150 (172)
Q Consensus        72 ~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP-~~~~~~~~~~~~~~~~~Lsd~ei~  150 (172)
                      .|++|+.++|.+||+.+-...       ...+.. ...+.+.+...|.    .|- .++            ..|+++|+.
T Consensus         2 tG~~lv~~~C~~CHs~~~i~~-------~~~v~~-~r~t~~~W~~~V~----~M~~~~G------------a~l~~~e~~   57 (85)
T d1pbya1           2 TGEEVLQNACAACHVQHEDGR-------WERIDA-ARKTPEGWDMTVT----RMMRNHG------------VALEPEERA   57 (85)
T ss_dssp             CHHHHHHHTGGGTSCBCTTSC-------BTTGGG-EEECHHHHHHHHH----HHHHHSC------------CCCCHHHHH
T ss_pred             CHHHHHHHHHHHhCCcccccc-------hhhhcc-CCCCHHHHHHHHH----HHHHHcC------------CCCCHHHHH
Confidence            489999999999998653210       011100 0116776666654    253 233            569999999


Q ss_pred             HHHHHHHhhh
Q 030717          151 LLAQFVKSQA  160 (172)
Q Consensus       151 ~VaaYl~~~~  160 (172)
                      .|++||....
T Consensus        58 ~Iv~YLa~~y   67 (85)
T d1pbya1          58 AIVRHLSDTR   67 (85)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHHc
Confidence            9999999764

>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Pseudomonas putida [TaxId: 303]

Probab=97.87  E-value=1.1e-06  Score=58.39  Aligned_cols=65  Identities=25%  Similarity=0.479  Sum_probs=41.9

Q ss_pred             hHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHH
Q 030717           72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG-FGEKCTPRGQCTFGARLQDEDIK  150 (172)
Q Consensus        72 ~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~-~~~~~~~~~~~~~~~~Lsd~ei~  150 (172)
                      .|++|+..+|.+||+.+....       ...+.. ...+.+.+...|.    .|-. ++            ..|+++|+.
T Consensus         2 ~G~~lv~~~C~~CHs~~~i~~-------~~~v~~-~r~t~~~W~~~V~----~M~~~~G------------a~l~~~e~~   57 (84)
T d1jmxa1           2 QGPSLLQNKCMGCHIPEGNDT-------YSRISH-QRKTPEGWLMSIA----RMQVMHG------------LQISDDDRR   57 (84)
T ss_dssp             CHHHHHHHHHBTTBCEEETTE-------ETTGGG-CEECHHHHHHHHH----HHHHHHC------------CCCCHHHHH
T ss_pred             cHHHHHHHHHHHhcCchhhcc-------cccccc-CCCCHHHHHHHHH----HHHHHcC------------CCCCHHHHH
Confidence            699999999999998653210       011100 1116666666554    3532 23            458999999


Q ss_pred             HHHHHHHhhh
Q 030717          151 LLAQFVKSQA  160 (172)
Q Consensus       151 ~VaaYl~~~~  160 (172)
                      .|++||....
T Consensus        58 ~Iv~YLa~~y   67 (84)
T d1jmxa1          58 TLVKYLADKQ   67 (84)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999999754

>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.70  E-value=2.7e-05  Score=57.05  Aligned_cols=20  Identities=10%  Similarity=0.414  Sum_probs=18.0

Q ss_pred             CCCCHHHHHHHHHHHHhhhh
Q 030717          142 ARLQDEDIKLLAQFVKSQAD  161 (172)
Q Consensus       142 ~~Lsd~ei~~VaaYl~~~~~  161 (172)
                      ..||++|+++|++||.++.+
T Consensus       115 ~~Ls~~E~~~LvaFL~sLt~  134 (158)
T d1iqca2         115 REFNKDEVSKIVAFLKTLTG  134 (158)
T ss_dssp             CCCCHHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHHHhcCC
Confidence            46999999999999999964

>d1dw0a_ a.3.1.1 (A:) SHP, an oxygen binding cytochrome c {Rhodobacter sphaeroides [TaxId: 1063]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: SHP, an oxygen binding cytochrome c
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.42  E-value=3.7e-05  Score=52.79  Aligned_cols=78  Identities=14%  Similarity=0.218  Sum_probs=47.4

Q ss_pred             hhhHHhHHHHHHc----------cCccccCCCCCCCC---CCCC--ccchhhhcCCCCCHHHHHHHHHhC-CCCCCCCCC
Q 030717           67 TVDIQKGVSLFRQ----------ACIGCHDGGGNVIQ---PGAT--LFLKDLQRNGVDTEDEIYHVTYFG-KGRMPGFGE  130 (172)
Q Consensus        67 ~~d~~~G~~lf~~----------~C~~CHg~~g~~~~---~~~~--~~~p~l~~~~~~~~~~l~~~i~~g-~~~MP~~~~  130 (172)
                      ..++++|+++|..          .|++||+.+....+   .|..  +..|..-...+.+.+.+.+....- ..+   ++ 
T Consensus        19 ~~sa~rG~~lf~~~~~~~~g~~~sCasCH~~~p~~~G~~~TgK~I~PlAps~np~RftD~akVEKWF~RNC~dV---lg-   94 (112)
T d1dw0a_          19 PADAERGRALFLSTQTGGKPDTPSCTTCHGADVTRAGQTRTGKEIAPLAPSATPDRFTDSARVEKWLGRNCNSV---IG-   94 (112)
T ss_dssp             CCCHHHHHHHHHCCCSSSCTTCCSTHHHHCSSTTSCEECTTSCEECCSSTTTSTTTTCCHHHHHHHHHHHHHHH---HS-
T ss_pred             CCCHHHHHHHHHhcccCCCCCCCccccccCCCCCcCCcccCCCCccccCCccChhhhcCHHHHHHHHHhhchhh---hc-
Confidence            4578999999942          69999996633211   1111  112333223455666666644321 111   33 


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717          131 KCTPRGQCTFGARLQDEDIKLLAQFVKSQ  159 (172)
Q Consensus       131 ~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~  159 (172)
                                 ...|.+|-.|+++||.++
T Consensus        95 -----------ReCTa~EKgD~l~~L~sq  112 (112)
T d1dw0a_          95 -----------RDCTPGEKADLLAWLAAQ  112 (112)
T ss_dssp             -----------SCCCHHHHHHHHHHHHTC
T ss_pred             -----------cccCHHHhhhHHHHHhcC
Confidence                       678999999999999875

>d1gu2a_ a.3.1.1 (A:) Cytochrome c'' {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c''
species: Methylophilus methylotrophus, strain w3a1 [TaxId: 17]

Probab=97.20  E-value=0.00023  Score=49.35  Aligned_cols=80  Identities=14%  Similarity=0.252  Sum_probs=49.0

Q ss_pred             hhHHhHHHHHHc----------cCccccCCCCCCC----CCCCC--ccchhhhcCCCCCHHHHHHHHHhC-CCCCCCCCC
Q 030717           68 VDIQKGVSLFRQ----------ACIGCHDGGGNVI----QPGAT--LFLKDLQRNGVDTEDEIYHVTYFG-KGRMPGFGE  130 (172)
Q Consensus        68 ~d~~~G~~lf~~----------~C~~CHg~~g~~~----~~~~~--~~~p~l~~~~~~~~~~l~~~i~~g-~~~MP~~~~  130 (172)
                      ..+++|+++|..          .|++||+.+....    ..|..  +..|..-...+.+.+.+.+....- ..+   ++ 
T Consensus        26 ~sa~rGe~lf~~k~~~~~g~~~sCasCH~~~p~~~G~h~~TgK~I~PlAps~np~RftD~akvEKWf~RNC~dv---~g-  101 (124)
T d1gu2a_          26 PSITDGKIFFNRKFKTPSGKEAACASCHTNNPANVGKNIVTGKEIPPLAPRVNTKRFTDIDKVEDEFTKHCNDI---LG-  101 (124)
T ss_dssp             CCHHHHHHHHHCCEECTTSCEECHHHHHCSCTTSCEECTTTCCEECCSCTTTSTTTTTCHHHHHHHHHHHHHHH---HS-
T ss_pred             cCHHHHHHHHhccccCCCCCcCccccccCCCcccCCccccCCCcccccCCccChhhhcCHHHHHHHHHhhcHhh---hc-
Confidence            568999999942          6999999663211    11221  122333223455666666544321 111   33 


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhC
Q 030717          131 KCTPRGQCTFGARLQDEDIKLLAQFVKSQADQ  162 (172)
Q Consensus       131 ~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~  162 (172)
                                 ...|.+|-.|++.||.++..+
T Consensus       102 -----------ReCTa~EKgD~l~~L~sq~rp  122 (124)
T d1gu2a_         102 -----------ADCSPSEKANFIAYLLTETKP  122 (124)
T ss_dssp             -----------SCCCHHHHHHHHHHHHHCCSC
T ss_pred             -----------ccCCHHHhhhHHHHHHhcccC
Confidence                       668999999999999998654

>d1h32a2 a.3.1.8 (A:151-261) Di-heme cytochrome c SoxA {Rhodovulum sulfidophilum [TaxId: 35806]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c SoxA
domain: Di-heme cytochrome c SoxA
species: Rhodovulum sulfidophilum [TaxId: 35806]

Probab=96.91  E-value=8.9e-05  Score=51.06  Aligned_cols=77  Identities=14%  Similarity=0.239  Sum_probs=43.4

Q ss_pred             hHHhHHHHHH-------ccCccccCCCCCCC------CCCCCccchhhhcC--CCCCHHHHHHHHHhCCCCCCCCCCCCC
Q 030717           69 DIQKGVSLFR-------QACIGCHDGGGNVI------QPGATLFLKDLQRN--GVDTEDEIYHVTYFGKGRMPGFGEKCT  133 (172)
Q Consensus        69 d~~~G~~lf~-------~~C~~CHg~~g~~~------~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~~MP~~~~~~~  133 (172)
                      -+++|++||.       .+|++||+..+...      ..+....+|.+...  ...+.+..++.=.... ...++     
T Consensus         8 ~~e~Ge~lf~~r~G~~~~sCasCH~~~~g~~~~~~~~~~g~~~~~P~y~~~~g~v~tLe~ri~~C~~~~-~~~p~-----   81 (111)
T d1h32a2           8 TWEKGREIYYTRYGQLDLSCASCHEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDT-RGVPF-----   81 (111)
T ss_dssp             HHHHHHHHHTCCBTTTTBCHHHHHTTSTTSEETTEECCCCCCTTCSEEETTTTEEECHHHHHHHHHHTT-TBCCC-----
T ss_pred             HHHHHHHHHhcccCCCCCChhhcccccCCcccccccccccccccCceeEecCCCeecHHHHHHHHHHHc-CCCCC-----
Confidence            4789999994       47999997532211      11222234544322  2345665444322211 12233     


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717          134 PRGQCTFGARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       134 ~~~~~~~~~~Lsd~ei~~VaaYl~~~~  160 (172)
                               ....+|+.+|.+||..+.
T Consensus        82 ---------~~~s~e~~aL~aYi~~~s   99 (111)
T d1h32a2          82 ---------AVGSPEFVALELYVASRG   99 (111)
T ss_dssp             ---------CTTCHHHHHHHHHHHHHT
T ss_pred             ---------CCCCHHHHHHHHHHHHHh
Confidence                     245678999999999875

>d1h32a1 a.3.1.8 (A:1-150) Di-heme cytochrome c SoxA {Rhodovulum sulfidophilum [TaxId: 35806]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c SoxA
domain: Di-heme cytochrome c SoxA
species: Rhodovulum sulfidophilum [TaxId: 35806]

Probab=96.57  E-value=0.00021  Score=51.74  Aligned_cols=76  Identities=13%  Similarity=0.291  Sum_probs=43.8

Q ss_pred             HHhHHHHHH-------ccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 030717           70 IQKGVSLFR-------QACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTF  140 (172)
Q Consensus        70 ~~~G~~lf~-------~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~  140 (172)
                      +++|++||.       ..|++||+..+.. ..|..-.+|.....  ...+.+..++.=....-..+++.           
T Consensus        58 ve~G~~lw~~~~G~~g~SCasCH~~~~~~-~~G~~a~yP~y~~~~g~v~tLe~rIn~C~~~~m~a~p~~-----------  125 (150)
T d1h32a1          58 VEEARAVWDRPEGTEGKACADCHGAVDDG-MYGLRAVYPKYVESAGKVRTVEQMINACRTSRMGAPEWD-----------  125 (150)
T ss_dssp             HHHHHHHHTSCCSTTCCCHHHHHCSHHHH-TTTHHHHCSEEETTTTEEECHHHHHHHHHHHTTCCCCCC-----------
T ss_pred             HHHHHHHHhcccCCCCCCHHHHhCccccc-hhhHhhccceEeCCCCCEecHHHHHHHHHHHhCCCCCCC-----------
Confidence            678999994       3799999753221 11222224444221  23466665554322222334442           


Q ss_pred             CCCCCHHHHHHHHHHHHhhh
Q 030717          141 GARLQDEDIKLLAQFVKSQA  160 (172)
Q Consensus       141 ~~~Lsd~ei~~VaaYl~~~~  160 (172)
                         ..-+|+.+|.+||..+.
T Consensus       126 ---~~S~em~aL~aYi~~~S  142 (150)
T d1h32a1         126 ---YIGPDMTAMVALIASVS  142 (150)
T ss_dssp             ---TTSHHHHHHHHHHHHTT
T ss_pred             ---CCCHHHHHHHHHHHHHh
Confidence               45688999999999875

>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.78  E-value=0.0018  Score=48.54  Aligned_cols=21  Identities=29%  Similarity=0.830  Sum_probs=18.5

Q ss_pred             hhhHHhHHHHHHccCccccCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDG   87 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~   87 (172)
                      .+.+++|.++|.+.|.+||+.
T Consensus        23 kaSLQRGaqvf~nyC~gCHsl   43 (195)
T d1ppjd1          23 HTSIRRGFQVYKQVCSSCHSM   43 (195)
T ss_dssp             HHHHHHHHHHHHHTGGGTCCC
T ss_pred             HHHHHhHHHHHHHHHhhccch
Confidence            456899999999999999993

>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.0022  Score=48.26  Aligned_cols=21  Identities=29%  Similarity=0.831  Sum_probs=18.6

Q ss_pred             hhhHHhHHHHHHccCccccCC
Q 030717           67 TVDIQKGVSLFRQACIGCHDG   87 (172)
Q Consensus        67 ~~d~~~G~~lf~~~C~~CHg~   87 (172)
                      .+.+++|.++|...|++||+.
T Consensus        26 kasLQRG~qvy~~~C~~CHsl   46 (199)
T d3cx5d1          26 HASIRRGYQVYREVCAACHSL   46 (199)
T ss_dssp             HHHHHHHHHHHHHTGGGTCCC
T ss_pred             HHHHHHHHHHHHHHhhhcccc
Confidence            456899999999999999994

>d1iqca1 a.3.1.5 (A:1-150) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Nitrosomonas europaea [TaxId: 915]

Probab=88.60  E-value=0.089  Score=37.20  Aligned_cols=20  Identities=30%  Similarity=0.464  Sum_probs=15.7

Q ss_pred             hhHHhHHHHHH---------ccCccccCC
Q 030717           68 VDIQKGVSLFR---------QACIGCHDG   87 (172)
Q Consensus        68 ~d~~~G~~lf~---------~~C~~CHg~   87 (172)
                      .-++-|+.||.         ..|++||..
T Consensus        17 ~~~~LGk~LF~D~~LS~~~~~SCasCH~~   45 (150)
T d1iqca1          17 DMAELGKMLFFDPRLSKSGFISCNSCHNL   45 (150)
T ss_dssp             HHHHHHHHHHTCGGGSSSSCCCHHHHSBT
T ss_pred             HHHHHHHHHhCCcccCCCCCCCcccccCh
Confidence            44788999992         479999964

>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas nautica [TaxId: 2743]

Probab=88.54  E-value=0.071  Score=38.44  Aligned_cols=20  Identities=25%  Similarity=0.517  Sum_probs=15.9

Q ss_pred             hhHHhHHHHHH---------ccCccccCC
Q 030717           68 VDIQKGVSLFR---------QACIGCHDG   87 (172)
Q Consensus        68 ~d~~~G~~lf~---------~~C~~CHg~   87 (172)
                      +.++-|+.||.         ..|++||..
T Consensus        29 akveLGk~LFfD~~LS~~~~~SCaSCH~~   57 (166)
T d1nmla1          29 AKVELGKMEFFEPRLSSSHLISCNTCHNV   57 (166)
T ss_dssp             HHHHHHHHHHTCGGGSTTSCCCHHHHSCT
T ss_pred             HHHHHHHHHhcCcccCCCCCcccccccCh
Confidence            45788999993         579999963

>d1eb7a1 a.3.1.5 (A:1-164) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.71  E-value=0.098  Score=37.60  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=16.3

Q ss_pred             hhhHHhHHHHHH---------ccCccccCC
Q 030717           67 TVDIQKGVSLFR---------QACIGCHDG   87 (172)
Q Consensus        67 ~~d~~~G~~lf~---------~~C~~CHg~   87 (172)
                      ...++-|+.||.         ..|++||..
T Consensus        28 ~~k~~LGk~LF~D~~LS~~~~~SCaSCH~~   57 (164)
T d1eb7a1          28 EQQRELGKKLFFDPRLSRSHVLSCNTCHNV   57 (164)
T ss_dssp             HHHHHHHHHHHHCGGGSTTSCCCHHHHSCT
T ss_pred             HHHHHHHHHHhCCcccCCCCCCCCccccCc
Confidence            345778999993         579999974