Citrus Sinensis ID: 030731

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MSYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFAYIQFELAHNFYYSVLPFPHFSLSKQF
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MSYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFAYIQFELAHnfyysvlpfphfslskqf
Flexible Loop (DISEMBL)
MSYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFAYIQFELAHNFYYSVLPFPHFSLSKQF
Low Complexity Region (SEG)
MSYGLPVMIYSFQLDAVIEAEKQAARDLIrqkrkdrallalkkkkaqeellkqVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFAYIQFELAHNFYYSVLPFPHFSLSKQF
Disordered region (IsUnstruct)
***GLPVMIYSFQLDAVIEAEKQAARDLI*******ALLALK***AQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL*****************DEINAILGEKL*****EEILAEFDNLEAQVFAYIQFELAHNFYYSVLPFPHF******
Disordered Region (DISOPRED)
***GLPVMIYSFQLDAVIEAEK*****************ALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTN***********EDVQKLMDDTEEAKAYQDEINAIL***LSAEDEEEILAEFDNL********************************
Disordered Region (DISEMBL)
MSYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFAYIQFELAHNFYYSVLPFPHFSLSKQF
Disordered Region (DISPRO)
***GLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFAYIQFELAHNFYYSVLPFPH*S*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSYGLPVMIYSFQLDAVIEAEKQAARDLxxxxxxxxxxxxxxxxxxxxxLLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEEILAEFDNLEAQVFAYIQFELAHNFYYSVLPFPHFSLSKQF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q9FY89	216	Vacuolar protein sorting-	yes	no	0.773	0.615	0.872	7e-59
Q8GXN6	219	Vacuolar protein sorting-	no	no	0.790	0.621	0.808	2e-56
Q54KZ4	218	Charged multivesicular bo	yes	no	0.709	0.559	0.442	3e-19
O94318	226	Vacuolar protein sorting-	yes	no	0.761	0.579	0.396	7e-16
Q5ZL55	200	Charged multivesicular bo	yes	no	0.75	0.645	0.341	2e-15
Q96FZ7	201	Charged multivesicular bo	yes	no	0.744	0.636	0.335	3e-13
Q5R861	201	Charged multivesicular bo	yes	no	0.744	0.636	0.335	3e-13
P0C0A3	200	Charged multivesicular bo	yes	no	0.75	0.645	0.325	4e-13
Q503V0	206	Charged multivesicular bo	no	no	0.75	0.626	0.372	2e-11
Q04272	221	Vacuolar protein sorting-	yes	no	0.773	0.601	0.309	4e-09

>sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1

 Score =  226 bits (575), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 116/133 (87%), Positives = 124/133 (93%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  QL+ VIEAEKQAARDLIR+KRKDRALLALKKK+ QEELLKQVD WLINVEQQLADIE
Sbjct: 31  YQQQLEKVIEAEKQAARDLIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQLADIE 90

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
           L SKQKAVFESLK G NAIKAIQSE+NL+DVQKLMDDT EAKAYQDE++AILGEKLSAED
Sbjct: 91  LTSKQKAVFESLKQGNNAIKAIQSEVNLDDVQKLMDDTAEAKAYQDELSAILGEKLSAED 150

Query: 130 EEEILAEFDNLEA 142
           EEEILAEFDNLE+
Sbjct: 151 EEEILAEFDNLES 163

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXN6|VP201_ARATH Vacuolar protein sorting-associated protein 20 homolog 1 OS=Arabidopsis thaliana GN=VPS20.1 PE=1 SV=1

 Score =  218 bits (554), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/136 (80%), Positives = 125/136 (91%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  +L+ VIEAEKQAARDLIR+KRKDRALLAL+KK+ QEELLKQVD W+INVEQQL DIE
Sbjct: 31  YQQKLEKVIEAEKQAARDLIREKRKDRALLALRKKRTQEELLKQVDQWVINVEQQLTDIE 90

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
           L SKQKAVFESLK G +AIKAIQSE++L+DVQKLMDDT +AKAYQDE+NAILGEKLSAED
Sbjct: 91  LTSKQKAVFESLKQGNSAIKAIQSELDLDDVQKLMDDTADAKAYQDELNAILGEKLSAED 150

Query: 130 EEEILAEFDNLEAQVF 145
           EE+ILAEFDNLE+Q+ 
Sbjct: 151 EEDILAEFDNLESQLI 166

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54KZ4|CHMP6_DICDI Charged multivesicular body protein 6 OS=Dictyostelium discoideum GN=chmp6 PE=3 SV=2

 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 85/122 (69%)

Query: 25  ARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSG 84
           A++  +  +K++ALLALKKKK QE++L +    L N+E+ +A++E A  Q  +FESLK G
Sbjct: 48  AKECSKAGKKNQALLALKKKKYQEKMLDESFANLQNIEELIANVEQAEIQVRIFESLKQG 107

Query: 85  TNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQV 144
             ++K IQ E++LEDV+ LM++T EA  YQ++I+  L  K S E+E+++L E D +E Q+
Sbjct: 108 NESLKEIQKEMSLEDVENLMEETAEAIQYQNDISEALSGKFSKEEEDDLLNELDEMEKQL 167

Query: 145 FA 146
            A
Sbjct: 168 NA 169

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|O94318|VPS20_SCHPO Vacuolar protein sorting-associated protein 20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps20 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 78/131 (59%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           YS +L+ + + E   AR  +R   K  AL ALK KK    L+ Q  G L N+EQ L+ IE
Sbjct: 28  YSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLYSGLITQTYGQLGNIEQLLSTIE 87

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
               QK V   L+ GTN I+ +Q+++ LE V ++ +D +EA +Y DE+N +L  ++S + 
Sbjct: 88  FTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDRDEAMSYVDEVNDMLQGRMSRDQ 147

Query: 130 EEEILAEFDNL 140
           E+EI  E D+L
Sbjct: 148 EDEIQEELDSL 158

Class E VPS protein implicated in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles. The lumenal sequestrated membrane proteins will be targeted into the vacuole after fusion of the endosome with the vacuole.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5ZL55|CHMP6_CHICK Charged multivesicular body protein 6 OS=Gallus gallus GN=CHMP6 PE=2 SV=3

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 82/129 (63%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  ++   +E E++ AR L+++ +K++A+L LKKK+ QE+LL + D  + N+E+ + DIE
Sbjct: 33  YQKRISLGLERERELARQLLKEGKKEKAMLLLKKKRYQEQLLDKTDNQISNLERMVQDIE 92

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
               +  V E LK G   +  +   +++E+V++++ +T++A  YQ +I+ IL   L+ ED
Sbjct: 93  FTQIEMKVIEGLKIGNECLNKMHQVMSIEEVERIIGETQDAVEYQRQIDEILAGSLTEED 152

Query: 130 EEEILAEFD 138
           E+ IL E +
Sbjct: 153 EDAILEELN 161

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membranes.

Gallus gallus (taxid: 9031)

>sp|Q96FZ7|CHMP6_HUMAN Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1 SV=3

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 76/128 (59%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  ++   +E E+  AR L+R  RK+RA L LKKK+ QE+LL + +  + ++E  +  IE
Sbjct: 33  YQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIE 92

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
               +  V E L+ G   +  +   +++E+V++++D+T+EA  YQ +I+ +L    + ED
Sbjct: 93  FTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQED 152

Query: 130 EEEILAEF 137
           E+ IL E 
Sbjct: 153 EDAILEEL 160

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membranes.

Homo sapiens (taxid: 9606)

>sp|Q5R861|CHMP6_PONAB Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2 SV=3

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 76/128 (59%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  ++   +E E+  AR L+R  RK+RA L LKKK+ QE+LL + +  + ++E  +  IE
Sbjct: 33  YQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIE 92

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
               +  V E L+ G   +  +   +++E+V++++D+T+EA  YQ +I+ +L    + ED
Sbjct: 93  FTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQED 152

Query: 130 EEEILAEF 137
           E+ IL E 
Sbjct: 153 EDAILEEL 160

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membrane.

Pongo abelii (taxid: 9601)

>sp|P0C0A3|CHMP6_MOUSE Charged multivesicular body protein 6 OS=Mus musculus GN=Chmp6 PE=2 SV=2

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 77/129 (59%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  ++   +E E+  AR L+R  RK+RA L LKKK+ +E+LL + +  + ++E  +  IE
Sbjct: 33  YQKRVTQQLERERALARQLLRDGRKERAKLLLKKKRYREQLLDRTENQISSLEAMVQSIE 92

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
               +  V E L+ G   +  +   +++E+V++++D+T+EA  YQ +I+ +L    + ED
Sbjct: 93  FTQIEMKVMEGLQVGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGNFTQED 152

Query: 130 EEEILAEFD 138
           E+ IL E +
Sbjct: 153 EDAILEELN 161

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membranes.

Mus musculus (taxid: 10090)

>sp|Q503V0|CHMP6_DANRE Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2 SV=3

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 86/129 (66%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  ++   ++ E+Q A+ L++  +KD+ALL LKKK+ Q++LL++ +  + N+E+ + DIE
Sbjct: 33  YQKRITLQMDKERQLAKQLLKDGKKDKALLLLKKKRYQDQLLEKTENQISNLERMVQDIE 92

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
            A  +  V E LK G + +K +   +++E+V+K+MD+T +A  YQ +I+ +L   L+ ED
Sbjct: 93  FAQIEMKVIEGLKVGNDCLKKMHEVLSIEEVEKIMDETHDAIEYQKQIDEMLAGSLTQED 152

Query: 130 EEEILAEFD 138
           EE +LAE +
Sbjct: 153 EEAVLAELE 161

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membranes.

Danio rerio (taxid: 7955)

>sp|Q04272|VPS20_YEAST Vacuolar protein sorting-associated protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS20 PE=1 SV=3

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 9/142 (6%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKD-----RALLALKKKKAQEELLKQVDGWLINVEQQ 64
           ++ + D +I  EK   +DLIR+  ++     +    LK+   QE LL+Q    LIN+E  
Sbjct: 30  FTRRTDNLILVEKSQLKDLIRKNPENYKSNMKVRFLLKRIHYQEHLLQQASDQLINLENM 89

Query: 65  LADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEK 124
           ++ +E    +K     LK+G   +K +  E +  +V +LMDD ++  AYQ+EIN  L   
Sbjct: 90  VSTLEFKMVEKQFINGLKNGNEILKKLNKEFS--NVDELMDDVQDQIAYQNEINETLSRS 147

Query: 125 L--SAEDEEEILAEFDNLEAQV 144
           L  ++  E+++  E D LE+++
Sbjct: 148 LVGTSNYEDDLDKELDALESEL 169

Class E VPS protein implicated in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles. The lumenal sequestrated membrane proteins will be targeted into the vacuole after fusion of the endosome with the vacuole. Acts a component of the ESCRT-III complex, which appears to be critical for late steps in MVB sorting, such as membrane invagination and final cargo sorting and recruitment of late-acting components of the sorting machinery. The MVB pathway requires the sequential function of ESCRT-O, -I,-II and -III complex assemblies. Required for the oligomerization of SNF7 into a membrane-associated filament. The VPS20-SNF7 subcomplex is responsible for the membrane association of the ESCRT-III complex. Also required for the RIM101 repressor proteolytic activation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
224083490	222	predicted protein [Populus trichocarpa]	0.784	0.608	0.903	5e-60
224096083	222	predicted protein [Populus trichocarpa]	0.784	0.608	0.881	4e-58
357464749	217	Vacuolar protein sorting-associated prot	0.779	0.617	0.873	2e-57
15242368	216	vacuolar protein sorting-associated prot	0.773	0.615	0.872	3e-57
255631754	214	unknown [Glycine max]	0.784	0.630	0.859	8e-57
356508953	215	PREDICTED: vacuolar protein sorting-asso	0.784	0.627	0.859	8e-57
363807342	215	uncharacterized protein LOC100820408 [Gl	0.784	0.627	0.859	9e-57
255639580	215	unknown [Glycine max]	0.784	0.627	0.859	9e-57
297806961	217	SNF7 family protein [Arabidopsis lyrata	0.790	0.626	0.838	2e-56
297793977	219	SNF7 family protein [Arabidopsis lyrata	0.790	0.621	0.808	5e-55

>gi|224083490|ref|XP_002307048.1| predicted protein [Populus trichocarpa] gi|222856497|gb|EEE94044.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 122/135 (90%), Positives = 130/135 (96%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  QL+AVIEAEKQAA+DLIR+KRKDRALLALKKKK QEELLKQVD WLINVEQQLADIE
Sbjct: 31  YQQQLEAVIEAEKQAAKDLIREKRKDRALLALKKKKTQEELLKQVDTWLINVEQQLADIE 90

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
           LASKQKAVFESLKSGT+AIKAIQSE+NL+DVQKLMDDT EAKAYQDEINAILGEKLSAED
Sbjct: 91  LASKQKAVFESLKSGTDAIKAIQSEVNLDDVQKLMDDTAEAKAYQDEINAILGEKLSAED 150

Query: 130 EEEILAEFDNLEAQV 144
           EEEILAEF+NLEAQ+
Sbjct: 151 EEEILAEFENLEAQM 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096083|ref|XP_002310532.1| predicted protein [Populus trichocarpa] gi|222853435|gb|EEE90982.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 119/135 (88%), Positives = 127/135 (94%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  QL+ VIEAEK AA+DLIR+KRKDRALLALKKKK QEELLKQVD WLINVEQQLADIE
Sbjct: 31  YQQQLETVIEAEKLAAKDLIREKRKDRALLALKKKKTQEELLKQVDTWLINVEQQLADIE 90

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
           LASKQKAVFESLKSGT+AIKAIQSE+NL+DVQKLMDDT EAKAYQDEINAILGEKLSAED
Sbjct: 91  LASKQKAVFESLKSGTDAIKAIQSEVNLDDVQKLMDDTAEAKAYQDEINAILGEKLSAED 150

Query: 130 EEEILAEFDNLEAQV 144
           EEEILAEF++LE QV
Sbjct: 151 EEEILAEFEDLETQV 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464749|ref|XP_003602656.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|355491704|gb|AES72907.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|388497292|gb|AFK36712.1| unknown [Medicago truncatula]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/134 (87%), Positives = 126/134 (94%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  +LDAVIEAEKQAARDLIR+K+KDRALLALKKKK QEELLKQVD WLINVEQQLADIE
Sbjct: 31  YQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDTWLINVEQQLADIE 90

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
           L SKQKAVFESLK+G+ AI+AIQSEIN+EDVQKLMDDT EAKAYQDEINAILGE+LSAED
Sbjct: 91  LTSKQKAVFESLKAGSKAIEAIQSEINIEDVQKLMDDTAEAKAYQDEINAILGEQLSAED 150

Query: 130 EEEILAEFDNLEAQ 143
           EEEILAEF+NLE Q
Sbjct: 151 EEEILAEFENLETQ 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242368|ref|NP_196488.1| vacuolar protein sorting-associated protein 20-2 [Arabidopsis thaliana] gi|75173205|sp|Q9FY89.1|VP202_ARATH RecName: Full=Vacuolar protein sorting-associated protein 20 homolog 2; Short=AtVPS20-2; AltName: Full=Charged multivesicular body protein 6 homolog 2; AltName: Full=ESCRT-III complex subunit VPS20 homolog 2 gi|9955513|emb|CAC05452.1| putative protein [Arabidopsis thaliana] gi|34365667|gb|AAQ65145.1| At5g09260 [Arabidopsis thaliana] gi|51969450|dbj|BAD43417.1| unknown protein [Arabidopsis thaliana] gi|332003983|gb|AED91366.1| vacuolar protein sorting-associated protein 20-2 [Arabidopsis thaliana]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 116/133 (87%), Positives = 124/133 (93%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  QL+ VIEAEKQAARDLIR+KRKDRALLALKKK+ QEELLKQVD WLINVEQQLADIE
Sbjct: 31  YQQQLEKVIEAEKQAARDLIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQLADIE 90

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
           L SKQKAVFESLK G NAIKAIQSE+NL+DVQKLMDDT EAKAYQDE++AILGEKLSAED
Sbjct: 91  LTSKQKAVFESLKQGNNAIKAIQSEVNLDDVQKLMDDTAEAKAYQDELSAILGEKLSAED 150

Query: 130 EEEILAEFDNLEA 142
           EEEILAEFDNLE+
Sbjct: 151 EEEILAEFDNLES 163

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255631754|gb|ACU16244.1| unknown [Glycine max]

 Score =  224 bits (572), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 127/135 (94%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  +LDAVIEAEKQAARDLIR+K+KDRALLALKKKK QEELLKQVD WLINVEQQLADIE
Sbjct: 31  YQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDAWLINVEQQLADIE 90

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
           LASKQKAVFESLK+G +A+KAIQSEIN+EDVQKLMDDT EAKAYQDEIN I+GEKLSAED
Sbjct: 91  LASKQKAVFESLKAGNDAMKAIQSEINIEDVQKLMDDTAEAKAYQDEINEIMGEKLSAED 150

Query: 130 EEEILAEFDNLEAQV 144
           EEEILAEF++LE Q+
Sbjct: 151 EEEILAEFEDLEIQL 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508953|ref|XP_003523217.1| PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Glycine max]

 Score =  224 bits (572), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 127/135 (94%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  +LDAVIEAEKQAARDLIR+K+KDRALLALKKKK QEELLKQVD WLINVEQQLADIE
Sbjct: 31  YQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDAWLINVEQQLADIE 90

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
           LASKQKAVFESLK+G +A+KAIQSEIN+EDVQKLMDDT EAKAYQDEIN I+GEKLSAED
Sbjct: 91  LASKQKAVFESLKAGNDAMKAIQSEINIEDVQKLMDDTAEAKAYQDEINEIMGEKLSAED 150

Query: 130 EEEILAEFDNLEAQV 144
           EEEILAEF++LE Q+
Sbjct: 151 EEEILAEFEDLEIQL 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807342|ref|NP_001242629.1| uncharacterized protein LOC100820408 [Glycine max] gi|255640024|gb|ACU20303.1| unknown [Glycine max]

 Score =  224 bits (571), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 127/135 (94%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  +LDAVIEAEKQAARDLIR+K+KDRALLALKKKK QEELLKQVD WLINVEQQLADIE
Sbjct: 31  YQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDAWLINVEQQLADIE 90

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
           LASKQKAVFESLK+G +A+KAIQSEIN+EDVQKLMDDT EAKAYQDEIN I+GEKLSAED
Sbjct: 91  LASKQKAVFESLKAGNDAMKAIQSEINIEDVQKLMDDTAEAKAYQDEINEIMGEKLSAED 150

Query: 130 EEEILAEFDNLEAQV 144
           EEEILAEF++LE Q+
Sbjct: 151 EEEILAEFEDLEIQL 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639580|gb|ACU20084.1| unknown [Glycine max]

 Score =  224 bits (571), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 127/135 (94%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  +LDAVIEAEKQAARDLIR+K+KDRALLALKKKK QEELLKQVD WLINVEQQLADIE
Sbjct: 31  YQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDAWLINVEQQLADIE 90

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
           LASKQKAVFESLK+G +A+KAIQSEIN+EDVQKLMDDT EAKAYQDEIN I+GEKLSAED
Sbjct: 91  LASKQKAVFESLKAGNDAMKAIQSEINIEDVQKLMDDTAEAKAYQDEINEIMGEKLSAED 150

Query: 130 EEEILAEFDNLEAQV 144
           EEEILAEF++LE Q+
Sbjct: 151 EEEILAEFEDLEIQL 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806961|ref|XP_002871364.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297317201|gb|EFH47623.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/136 (83%), Positives = 126/136 (92%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  QL+ VIEAEKQAARDLIR+KRKDRALLALKKK+ QEELLKQVD WLINVEQQLADIE
Sbjct: 31  YQQQLEKVIEAEKQAARDLIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQLADIE 90

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
           L SKQKAVFESLK G +AIKAIQSE+NL+DVQKLMDDT EAKAYQDE++AILG+KLSAED
Sbjct: 91  LTSKQKAVFESLKQGNSAIKAIQSEVNLDDVQKLMDDTAEAKAYQDELSAILGDKLSAED 150

Query: 130 EEEILAEFDNLEAQVF 145
           EE+ILAEFDNLE+Q+ 
Sbjct: 151 EEDILAEFDNLESQLI 166

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793977|ref|XP_002864873.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297310708|gb|EFH41132.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 110/136 (80%), Positives = 126/136 (92%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
           Y  +L+ VIEAEKQAARDLIR+KRKDRALLAL+KK+ QEELLKQVD W+INVEQQLADIE
Sbjct: 31  YQQKLEKVIEAEKQAARDLIREKRKDRALLALRKKRTQEELLKQVDQWVINVEQQLADIE 90

Query: 70  LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
           L SKQKAVFESLK G +AIKAIQSE++L+DVQKLMDDT +AKAYQDE+NAILGEKLSAED
Sbjct: 91  LTSKQKAVFESLKQGNSAIKAIQSELDLDDVQKLMDDTADAKAYQDELNAILGEKLSAED 150

Query: 130 EEEILAEFDNLEAQVF 145
           EE++LAEFDNLE+Q+ 
Sbjct: 151 EEDVLAEFDNLESQLI 166

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2184767	216	VPS20.2 "vacuolar protein sort	0.773	0.615	0.714	6.6e-42
DICTYBASE|DDB_G0287021	218	vps20 "SNF7 family protein" [D	0.517	0.408	0.449	2.9e-16
FB|FBgn0034744	212	Vps20 "Vacuolar protein sortin	0.779	0.632	0.305	1.1e-14
ZFIN|ZDB-GENE-040924-2	206	chmp6b "chromatin modifying pr	0.75	0.626	0.279	9.1e-13
POMBASE|SPBC215.14c	226	vps20 "ESCRT III complex subun	0.761	0.579	0.312	1.2e-12
ASPGD|ASPL0000059099	208	vps20 [Emericella nidulans (ta	0.517	0.427	0.388	3.1e-12
UNIPROTKB|G4MKC0	202	MGG_02515 "Charged multivesicu	0.523	0.445	0.395	5.8e-11
UNIPROTKB|F1NBY7	197	CHMP6 "Charged multivesicular	0.75	0.654	0.255	1.2e-10
UNIPROTKB|Q5ZL55	200	CHMP6 "Charged multivesicular	0.75	0.645	0.255	1.2e-10
WB|WBGene00022027	208	vps-20 [Caenorhabditis elegans	0.767	0.634	0.257	1.2e-10

TAIR|locus:2184767 VPS20.2 "vacuolar protein sorting-associated protein 20.2" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 95/133 (71%), Positives = 101/133 (75%)

Query:    10 YSFQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIE 69
             Y  QL+ VIEAEKQAARDLI                        VD WLINVEQQLADIE
Sbjct:    31 YQQQLEKVIEAEKQAARDLIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQLADIE 90

Query:    70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
             L SKQKAVFESLK G NAIKAIQSE+NL+DVQKLMDDT EAKAYQDE++AILGEKLSAED
Sbjct:    91 LTSKQKAVFESLKQGNNAIKAIQSEVNLDDVQKLMDDTAEAKAYQDELSAILGEKLSAED 150

Query:   130 EEEILAEFDNLEA 142
             EEEILAEFDNLE+
Sbjct:   151 EEEILAEFDNLES 163

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0287021 vps20 "SNF7 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 40/89 (44%), Positives = 62/89 (69%)

Query:    58 LINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEI 117
             L N+E+ +A++E A  Q  +FESLK G  ++K IQ E++LEDV+ LM++T EA  YQ++I
Sbjct:    81 LQNIEELIANVEQAEIQVRIFESLKQGNESLKEIQKEMSLEDVENLMEETAEAIQYQNDI 140

Query:   118 NAILGEKLSAEDEEEILAEFDNLEAQVFA 146
             +  L  K S E+E+++L E D +E Q+ A
Sbjct:   141 SEALSGKFSKEEEDDLLNELDEMEKQLNA 169

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0034744 Vps20 "Vacuolar protein sorting 20" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 41/134 (30%), Positives = 71/134 (52%)

Query:    10 YSFQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIE 69
             Y  +++  +E ++  AR  +                         D  L N+E+  ADIE
Sbjct:    37 YQKRIETQLENDRLLARKCLQQGRKDRAKLLLRKKKYQESLLTNADKQLENLEKLAADIE 96

Query:    70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
              A  +  V + LK+G  A+K +   +++++V+++MD+T E    Q EI+AIL + L+ +D
Sbjct:    97 FAQVEMKVLDGLKAGNAALKKVHEMLDIDEVERIMDETREGIEKQQEIDAILTDVLTTQD 156

Query:   130 EEEILAEFDNLEAQ 143
             EE++LAE D LEA+
Sbjct:   157 EEDVLAELDALEAE 170

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-040924-2 chmp6b "chromatin modifying protein 6b" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 36/129 (27%), Positives = 66/129 (51%)

Query:    10 YSFQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIE 69
             Y  ++   ++ E+Q A+ L+                         +  + N+E+ + DIE
Sbjct:    33 YQKRITLQMDKERQLAKQLLKDGKKDKALLLLKKKRYQDQLLEKTENQISNLERMVQDIE 92

Query:    70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
              A  +  V E LK G + +K +   +++E+V+K+MD+T +A  YQ +I+ +L   L+ ED
Sbjct:    93 FAQIEMKVIEGLKVGNDCLKKMHEVLSIEEVEKIMDETHDAIEYQKQIDEMLAGSLTQED 152

Query:   130 EEEILAEFD 138
             EE +LAE +
Sbjct:   153 EEAVLAELE 161

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

POMBASE|SPBC215.14c vps20 "ESCRT III complex subunit Vps20" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 41/131 (31%), Positives = 66/131 (50%)

Query:    10 YSFQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIE 69
             YS +L+ + + E   AR  +                          G L N+EQ L+ IE
Sbjct:    28 YSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLYSGLITQTYGQLGNIEQLLSTIE 87

Query:    70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
                 QK V   L+ GTN I+ +Q+++ LE V ++ +D +EA +Y DE+N +L  ++S + 
Sbjct:    88 FTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDRDEAMSYVDEVNDMLQGRMSRDQ 147

Query:   130 EEEILAEFDNL 140
             E+EI  E D+L
Sbjct:   148 EDEIQEELDSL 158

GO:0000815 "ESCRT III complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005938 "cell cortex" evidence=IDA

GO:0006900 "membrane budding" evidence=IC

GO:0043328 "protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IMP

GO:0045324 "late endosome to vacuole transport" evidence=IMP

ASPGD|ASPL0000059099 vps20 [Emericella nidulans (taxid:162425)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:    55 DGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN-LEDVQKLMDDTEEAKAY 113
             D  L  +EQ  + +E A  QK V   L+ GT  ++ I  E+  +E V+KL+ +TEEA+AY
Sbjct:    75 DAQLAQLEQLTSQVEFALVQKDVLYGLQQGTQVLQMINKEMGGIEGVEKLLGETEEARAY 134

Query:   114 QDEINAILGEKLSAEDEEEILAEFDNLEAQ 143
             Q+EI+ +L   LS +DE+E+  E + L+ +
Sbjct:   135 QEEISQMLAGNLSNQDEDEVEDELEALQRE 164

GO:0070676 "intralumenal vesicle formation" evidence=IEA

GO:0043328 "protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005938 "cell cortex" evidence=IEA

GO:0000815 "ESCRT III complex" evidence=IEA

UNIPROTKB|G4MKC0 MGG_02515 "Charged multivesicular body protein 6" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 36/91 (39%), Positives = 54/91 (59%)

Query:    55 DGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN-LEDVQKLMDDTEEAKAY 113
             D  L  +E+    +E A  QK V   L+ GT  ++ I  E+  +E V+KLM +T +A AY
Sbjct:    73 DAQLDQLEKLANSVEFALIQKDVVFGLQQGTKVLEEIHKEMGGIEHVEKLMGETADAIAY 132

Query:   114 QDEINAILGEKLSAEDEEEILAEFDNLEAQV 144
             Q EI+ +LG  +S +DE+E+  E   LEA+V
Sbjct:   133 QKEISEMLGNSMSNQDEDEVEDELAALEAEV 163

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NBY7 CHMP6 "Charged multivesicular body protein 6" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 33/129 (25%), Positives = 62/129 (48%)

Query:    10 YSFQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIE 69
             Y  ++   +E E++ AR L+                         D  + N+E+ + DIE
Sbjct:    30 YQKRISLGLERERELARQLLKEGKKEKAMLLLKKKRYQEQLLDKTDNQISNLERMVQDIE 89

Query:    70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
                 +  V E LK G   +  +   +++E+V++++ +T++A  YQ +I+ IL   L+ ED
Sbjct:    90 FTQIEMKVIEGLKIGNECLNKMHQVMSIEEVERIIGETQDAVEYQRQIDEILAGSLTEED 149

Query:   130 EEEILAEFD 138
             E+ IL E +
Sbjct:   150 EDAILEELN 158

GO:0015031 "protein transport" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

UNIPROTKB|Q5ZL55 CHMP6 "Charged multivesicular body protein 6" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 33/129 (25%), Positives = 62/129 (48%)

Query:    10 YSFQLDAVIEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIE 69
             Y  ++   +E E++ AR L+                         D  + N+E+ + DIE
Sbjct:    33 YQKRISLGLERERELARQLLKEGKKEKAMLLLKKKRYQEQLLDKTDNQISNLERMVQDIE 92

Query:    70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
                 +  V E LK G   +  +   +++E+V++++ +T++A  YQ +I+ IL   L+ ED
Sbjct:    93 FTQIEMKVIEGLKIGNECLNKMHQVMSIEEVERIIGETQDAVEYQRQIDEILAGSLTEED 152

Query:   130 EEEILAEFD 138
             E+ IL E +
Sbjct:   153 EDAILEELN 161

GO:0015031 "protein transport" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

WB|WBGene00022027 vps-20 [Caenorhabditis elegans (taxid:6239)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 34/132 (25%), Positives = 65/132 (49%)

Query:    18 IEAEKQAARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAV 77
             +E E+Q A+ LI                            L  +EQ + D+E A  Q+ V
Sbjct:    45 LEKERQLAKQLIKDGRKDRALLLLKKKRYQEKIIDQTLNHLSKIEQMVNDLEFAEVQQRV 104

Query:    78 FESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEF 137
              + L+ G  A+K +    +++++ ++M++T+EA  YQ+EI+ +L  +LS  D  ++  E 
Sbjct:   105 TDGLRQGNEALKKMNQLFDIDEIDRIMEETKEAAEYQEEISNMLSGQLSNTDVSDVEKEL 164

Query:   138 DNLEAQVFAYIQ 149
             ++L A  +  +Q
Sbjct:   165 EDLLAAEWGTVQ 176

GO:0015031 "protein transport" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FY89	VP202_ARATH	No assigned EC number	0.8721	0.7732	0.6157	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00050070	hypothetical protein (222 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIII.2975.1	hypothetical protein (249 aa)					•	•	•		0.906
	grail3.0029023702	hypothetical protein (179 aa)				•	•	•	•		0.706
	estExt_fgenesh4_pm.C_LG_X0978	hypothetical protein (447 aa)					•	•	•		0.554
	estExt_Genewise1_v1.C_LG_VIII1654	hypothetical protein (229 aa)					•	•	•		0.480
	eugene3.00061076	hypothetical protein (253 aa)					•	•	•	•	0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam03357	169	pfam03357, Snf7, Snf7	5e-32
PTZ00464	211	PTZ00464, PTZ00464, SNF-7-like protein; Provisiona	9e-08
PTZ00446	191	PTZ00446, PTZ00446, vacuolar sorting protein SNF7-	5e-06
PRK12901	1112	PRK12901, secA, preprotein translocase subunit Sec	0.004

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score =  112 bits (282), Expect = 5e-32
 Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 3/134 (2%)

Query: 13  QLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELAS 72
            L+  I+  +   + L ++  KD AL+ LK+KK  E+ L Q+DG L N+EQ    IE A 
Sbjct: 19  SLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQLDGQLANLEQVRMAIENAK 78

Query: 73  KQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL---SAED 129
             + V  ++K G  A+KA+   ++++ +  LMD+ E+     DEI+ +L + L     ED
Sbjct: 79  TNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKADEISEMLSDTLDDADEED 138

Query: 130 EEEILAEFDNLEAQ 143
           EEE+ AE D L  +
Sbjct: 139 EEELDAELDALLDE 152

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|240425 PTZ00464, PTZ00464, SNF-7-like protein; Provisional

 Score = 49.4 bits (118), Expect = 9e-08
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 10/136 (7%)

Query: 18  IEAEKQAARDLIRQKR-------KDRALLALKKKKAQEELLKQVDGWLINVEQQLADIEL 70
           I+AE    ++ I++ R       K RA+  L++K+  +     +     N++Q     E 
Sbjct: 37  IDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTES 96

Query: 71  ASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE-- 128
               K   +++K     +K    ++N++ V+ L D+  +      EI  I+G        
Sbjct: 97  VKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDD 156

Query: 129 -DEEEILAEFDNLEAQ 143
            DE+E+L E D L+  
Sbjct: 157 IDEDEMLGELDALDFD 172

Length = 211

>gnl|CDD|240422 PTZ00446, PTZ00446, vacuolar sorting protein SNF7-like; Provisional

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 13  QLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELAS 72
           Q++  I+  +  A+  + Q +   A + LK+KK  E+ ++ +    + +E  + ++E   
Sbjct: 45  QVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMH 104

Query: 73  KQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL-SAEDEE 131
             K    +L    N  K + +EIN + V+K++D  +E K  Q+EIN  L   L +  D++
Sbjct: 105 LHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDD 164

Query: 132 EILAEFDNLEAQ 143
           EI  E D L+ Q
Sbjct: 165 EIDKELDLLKEQ 176

Length = 191

>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 73  KQKAVFESLKSGTN-AIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEE 131
           K KA +  L++ +N  ++A   E      Q + +   +  A  +E+ A   E L  ++ E
Sbjct: 26  KIKAEYPELEALSNDELRAKTDEFK----QYIKEAVADIDAKIEELKAEAIESLDIDERE 81

Query: 132 EILAEFDNLEAQV 144
           +I A+ D LE + 
Sbjct: 82  DIYAQIDKLEKEA 94

Length = 1112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	100.0
KOG2910	209	consensus Uncharacterized conserved protein predic	100.0
PTZ00464	211	SNF-7-like protein; Provisional	100.0
KOG1656	221	consensus Protein involved in glucose derepression	100.0
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.95
KOG2911	439	consensus Uncharacterized conserved protein [Funct	99.95
KOG1655	218	consensus Protein involved in vacuolar protein sor	99.9
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	99.66
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	99.12
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	98.82
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	98.47
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	98.11
PRK10698	222	phage shock protein PspA; Provisional	97.92
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	97.67
COG5491	204	VPS24 Conserved protein implicated in secretion [C	97.16
KOG1655	218	consensus Protein involved in vacuolar protein sor	96.91
PTZ00464	211	SNF-7-like protein; Provisional	96.85
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	96.81
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	96.67
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	95.35
COG5491	204	VPS24 Conserved protein implicated in secretion [C	94.35
COG5665	548	NOT5 CCR4-NOT transcriptional regulation complex,	91.83
PF07743	78	HSCB_C: HSCB C-terminal oligomerisation domain; In	90.71
KOG2911	439	consensus Uncharacterized conserved protein [Funct	87.96
smart00685	59	DM14 Repeats in fly CG4713, worm Y37H9A.3 and huma	87.66
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	85.87
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	84.64

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=100.00  E-value=9.6e-35  Score=231.58  Aligned_cols=147  Identities=25%  Similarity=0.310  Sum_probs=141.1

Q ss_pred             CccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 030731            2 SYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESL   81 (172)
Q Consensus         2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~al   81 (172)
                      ++|+.|.+|+.+|+.+|+.+...||++++.|++.+|+.|||+||+||++++++.+++++|++++++||+|+++..|+.||
T Consensus        34 ~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aL  113 (191)
T PTZ00446         34 EAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNAL  113 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHhhhh
Q 030731           82 KSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL-SAEDEEEILAEFDNLEAQVFAYI  148 (172)
Q Consensus        82 k~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~-~~~DedELe~EL~~L~~e~~~~~  148 (172)
                      +.|+++||.+|+.|++|+|+++||+++|+++.++||+++|++++ +++||+||++||++|+.+..+..
T Consensus       114 k~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e~l~~~  181 (191)
T PTZ00446        114 SYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQTMEEK  181 (191)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999874 57999999999999998776543

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=100.00  E-value=4.4e-34  Score=224.63  Aligned_cols=155  Identities=52%  Similarity=0.685  Sum_probs=148.8

Q ss_pred             CccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 030731            2 SYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESL   81 (172)
Q Consensus         2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~al   81 (172)
                      +|||+|.+|++++++.++.++..||.++|.|+|.+|+.+||+|+++|..|.++.+++.||++++..||.+...+.|+++|
T Consensus        23 ~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gL  102 (209)
T KOG2910|consen   23 TQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGL  102 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhhhhhhhhcccCC
Q 030731           82 KSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFAYIQFELAHNFYY  158 (172)
Q Consensus        82 k~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~~~~~~~~~~~~~  158 (172)
                      +.||.+||++++.+++|+|+++||+.+|.+++++||+++|++.++..|+++|++||++|+++..+.  .+.|+.|+.
T Consensus       103 k~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~~dEddi~~EldaLese~~~e--~e~PevPs~  177 (209)
T KOG2910|consen  103 KQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSAEDEDDILAELDALESELEVE--AELPEVPST  177 (209)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhhh--hhcCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999866  346666654

>PTZ00464 SNF-7-like protein; Provisional

Probab=100.00  E-value=1.8e-32  Score=222.04  Aligned_cols=167  Identities=20%  Similarity=0.285  Sum_probs=140.0

Q ss_pred             cchHHhHHHHHHHHHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 030731            4 GLPVMIYSFQLDAVIEAEKQAARDLIRQK-------RKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKA   76 (172)
Q Consensus         4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~g-------~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~   76 (172)
                      |+++..+.+++. +|+.+...||++++++       .|.+|+.|||+||+||++++++.++++||+++.++|++++++..
T Consensus        24 ~~r~~~l~kKi~-~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~  102 (211)
T PTZ00464         24 GGRSEVVDARIN-KIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKV  102 (211)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444442 2566667798888754       48999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHHhhhh-hhhh
Q 030731           77 VFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL---SAEDEEEILAEFDNLEAQVFAYI-QFEL  152 (172)
Q Consensus        77 v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~---~~~DedELe~EL~~L~~e~~~~~-~~~~  152 (172)
                      ||.||+.|+++||.+|+.|++|+|+++||+|+|.++.++||+++|++++   +++||+||++||++|+.++..+. .+-+
T Consensus       103 vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~~e~~~~~l  182 (211)
T PTZ00464        103 QVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEKEADASYL  182 (211)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhccccchhh
Confidence            9999999999999999999999999999999999999999999999977   36899999999999999875333 2224


Q ss_pred             hcccCCCCCCCCCCccccc
Q 030731          153 AHNFYYSVLPFPHFSLSKQ  171 (172)
Q Consensus       153 ~~~~~~~~~~~p~~~~~~~  171 (172)
                      .+.|+....+.|.-|.|++
T Consensus       183 ~~~~~~p~~~~~~~~~~~~  201 (211)
T PTZ00464        183 ADALAVPGTKLPDVPTDEK  201 (211)
T ss_pred             hccccCCCCCCCCCCCccc
Confidence            4445555566777777764

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.5e-32  Score=215.18  Aligned_cols=147  Identities=30%  Similarity=0.408  Sum_probs=136.4

Q ss_pred             hHHhHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 030731            6 PVMIYSFQLDAVIEAEKQA-ARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSG   84 (172)
Q Consensus         6 ~L~~~~~~Le~~ie~~~~~-aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g   84 (172)
                      -|.++++.|+.+|...... |+.|..+ +|..|+.||||||+||++|.++.+.+.+|+.....||+|.+|.+|+.+|..|
T Consensus        32 mL~KKqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~  110 (221)
T KOG1656|consen   32 MLEKKQEFLEKKIEQEVENNARKYGTK-NKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSA  110 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence            4778999999999999777 7877775 8889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHHHHHHhhhhhhhhh
Q 030731           85 TNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS---AEDEEEILAEFDNLEAQVFAYIQFELA  153 (172)
Q Consensus        85 ~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~---~~DedELe~EL~~L~~e~~~~~~~~~~  153 (172)
                      +++||.+++.|+||+|+++||+|.|+.+..+||+++||.+++   ++|+|||.+||++|+.+..+.-...++
T Consensus       111 A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~  182 (221)
T KOG1656|consen  111 AKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIR  182 (221)
T ss_pred             HHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999874   699999999999999988766544443

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.95  E-value=1.2e-28  Score=191.20  Aligned_cols=154  Identities=31%  Similarity=0.387  Sum_probs=126.3

Q ss_pred             ccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 030731            3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLK   82 (172)
Q Consensus         3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk   82 (172)
                      +++.|.+++.+|+.+|+.+..+||+++++|++..|+.|||+++.++++++++.+++.+|+.++.+|+++..+..|+.+|+
T Consensus         9 ~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~   88 (171)
T PF03357_consen    9 TIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALK   88 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHHhhhh--hhhhhccc
Q 030731           83 SGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL---SAEDEEEILAEFDNLEAQVFAYI--QFELAHNF  156 (172)
Q Consensus        83 ~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~---~~~DedELe~EL~~L~~e~~~~~--~~~~~~~~  156 (172)
                      .|+.+|+.+++.+++++|+++|++|++.++.+++|+++|++++   +++||+||++||++|+.+.....  ...+|..|
T Consensus        89 ~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~~~~~~lp~~P  167 (171)
T PF03357_consen   89 QSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEEEEKQQLPSVP  167 (171)
T ss_dssp             --SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS--SS-SS---
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhhhccccCCcCC
Confidence            9999999999999999999999999999999999999999987   46899999999999999998665  33344444

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=1.3e-26  Score=201.27  Aligned_cols=158  Identities=25%  Similarity=0.295  Sum_probs=143.3

Q ss_pred             cchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 030731            4 GLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKS   83 (172)
Q Consensus         4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~   83 (172)
                      +..|.++++.|+++|+++..+++++++.|.|+.|+.+||+||++|+.+++....+.+|++++++|.+|++|+.|+.||+.
T Consensus       242 ~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~Ayks  321 (439)
T KOG2911|consen  242 RAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKS  321 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-C--CCCHHHHHHHHHHHHHHHhhhhhhhhhcccCCC
Q 030731           84 GTNAIKAIQSE-INLEDVQKLMDDTEEAKAYQDEINAILGEKL-S--AEDEEEILAEFDNLEAQVFAYIQFELAHNFYYS  159 (172)
Q Consensus        84 g~~~Lk~~~~~-~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~-~--~~DedELe~EL~~L~~e~~~~~~~~~~~~~~~~  159 (172)
                      |+.|||.+++. .+.|+||+++|++.|.++.++||+++|+++. +  +.+|++||+||+.|+.+..+.-...+|.++...
T Consensus       322 Gs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D~~k~e~~~lp~~~~sr  401 (439)
T KOG2911|consen  322 GSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEADEKKNEDLVLPLNSVSR  401 (439)
T ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccccCCccCCCCCCchH
Confidence            99999999995 4599999999999999999999999999875 3  689999999999999998864333355555544


Q ss_pred             CC
Q 030731          160 VL  161 (172)
Q Consensus       160 ~~  161 (172)
                      .+
T Consensus       402 ~~  403 (439)
T KOG2911|consen  402 DF  403 (439)
T ss_pred             HH
Confidence            33

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.3e-22  Score=158.24  Aligned_cols=139  Identities=27%  Similarity=0.331  Sum_probs=120.7

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 030731            6 PVMIYSFQLDAVIEAEKQAARDLIRQKR-----KDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFES   80 (172)
Q Consensus         6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~-----k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~a   80 (172)
                      .+..+|.+|+..+-..+..++.- |.|.     |++|++.||.||+||.+.+.+.++.+|+++.-+++++.+.+..+|.|
T Consensus        30 Sve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~A  108 (218)
T KOG1655|consen   30 SVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAA  108 (218)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            34444444544444444444433 4454     68999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHHHHHHh
Q 030731           81 LKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS--AEDEEEILAEFDNLEAQVF  145 (172)
Q Consensus        81 lk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~--~~DedELe~EL~~L~~e~~  145 (172)
                      |+.|++.||...+.|+||+|+++.|+|.+.++..+||+++|+.+++  ++|+++|+.||++|..|..
T Consensus       109 mK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~~E~d  175 (218)
T KOG1655|consen  109 MKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALGQELD  175 (218)
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHhHhh
Confidence            9999999999999999999999999999999999999999999886  6999999999999976653

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.4e-14  Score=114.98  Aligned_cols=155  Identities=16%  Similarity=0.204  Sum_probs=133.8

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 030731            7 VMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTN   86 (172)
Q Consensus         7 L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~   86 (172)
                      |.+....|+.+-.+...++|+..++|+...++..-|.--++.+++.++.++..+|+.+..+|+..+++..+..+|+.+++
T Consensus        28 leRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTk  107 (224)
T KOG3230|consen   28 LERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATK  107 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            55566677777778889999999999976655555555555566788899999999999999999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHhhhhhhhhhcccCCCCC
Q 030731           87 AIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-EDEEEILAEFDNLEAQVFAYIQFELAHNFYYSVL  161 (172)
Q Consensus        87 ~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~-~DedELe~EL~~L~~e~~~~~~~~~~~~~~~~~~  161 (172)
                      +|..+|++|++..+.+||.+|+.+.+.++...++++..+++ .+++|=|+|-++|.+.+.++|+.++.+..++.|-
T Consensus       108 am~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~  183 (224)
T KOG3230|consen  108 AMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQLSSLPS  183 (224)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHcccHHHHhccCcc
Confidence            99999999999999999999999999999999999999874 6677778999999999999998888766555444

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=8e-09  Score=80.66  Aligned_cols=158  Identities=11%  Similarity=0.115  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 030731           13 QLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQ   92 (172)
Q Consensus        13 ~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~   92 (172)
                      .++.+-.++.-++|+....|+.+.|+.+-|.--.+.++-.+..+....+..+..+-....++..+..||....++|+.+|
T Consensus        33 ~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amN  112 (208)
T KOG3231|consen   33 AMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMN  112 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            44444455566788999999999999999888888999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHhhhhhhhhhcccCCCC--CCCCCCccc
Q 030731           93 SEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-EDEEEILAEFDNLEAQVFAYIQFELAHNFYYSV--LPFPHFSLS  169 (172)
Q Consensus        93 ~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~-~DedELe~EL~~L~~e~~~~~~~~~~~~~~~~~--~~~p~~~~~  169 (172)
                      +.|+++++-..|-+++-...+++-..++|+..+++ .|...=++|-+++.+.+.++|+-++...++..|  .+.|-+|.+
T Consensus       113 k~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEisgKma~~P~a~s~~~~st~  192 (208)
T KOG3231|consen  113 KKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEISGKMAKAPSARSLPSASTS  192 (208)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcchhccCCccCCCCccccC
Confidence            99999999999999999999998888888877652 111111356778888888888777666665554  356666665


Q ss_pred             c
Q 030731          170 K  170 (172)
Q Consensus       170 ~  170 (172)
                      |
T Consensus       193 k  193 (208)
T KOG3231|consen  193 K  193 (208)
T ss_pred             C
Confidence            5

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=5.3e-07  Score=72.59  Aligned_cols=141  Identities=16%  Similarity=0.163  Sum_probs=113.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 030731            7 VMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTN   86 (172)
Q Consensus         7 L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~   86 (172)
                      |..++..|+..-......+|+++++|++.-++.+-|.--...+...+++..-.+|..+.+++..+-....+...|+.++.
T Consensus        30 ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lqkSte  109 (227)
T KOG3229|consen   30 LDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVAGSLQKSTE  109 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHHhHHH
Confidence            44455555555566667789999999988777777776667777889999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CC----CHHHHHHHHHHHHHHHhhh
Q 030731           87 AIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS-AE----DEEEILAEFDNLEAQVFAY  147 (172)
Q Consensus        87 ~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~-~~----DedELe~EL~~L~~e~~~~  147 (172)
                      +|+.+|+=+-+..+-.+|-++.-.+-+.--|.+++...+. ..    .+++.++|.+.+.-++...
T Consensus       110 vMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~  175 (227)
T KOG3229|consen  110 VMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGE  175 (227)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999987764 23    3444555555555555433

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=0.00014  Score=57.37  Aligned_cols=138  Identities=21%  Similarity=0.219  Sum_probs=103.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHhccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 030731            7 VMIYSFQLDAVIEAEKQAARDLIRQKRKDRAL----LALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLK   82 (172)
Q Consensus         7 L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~----~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk   82 (172)
                      |.+.-.+.++.-..+..++|+.+.+|+.+.|.    +.+|+|-..-    ++...-..+..+..++++|-+...|-..|.
T Consensus        21 L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~----n~LrlssRvDAVaaRvqTavtmr~Vt~sM~   96 (203)
T KOG3232|consen   21 LQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAV----NYLRLSSRVDAVAARVQTAVTMRKVTKSMA   96 (203)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555556678899999999987655    5566655433    444566789999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----CCCHHHHHHHHHHHHHHHhhhhhhhh
Q 030731           83 SGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS-----AEDEEEILAEFDNLEAQVFAYIQFEL  152 (172)
Q Consensus        83 ~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~-----~~DedELe~EL~~L~~e~~~~~~~~~  152 (172)
                      ...+.|-...+.||+++|-.+||.++-+-++.+--...+...++     ..+.++    .+.|..++.++.+-++
T Consensus        97 gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~----Vd~Lmq~vADeaGlEl  167 (203)
T KOG3232|consen   97 GVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGD----VDSLMQQVADEAGLEL  167 (203)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhH----HHHHHHHHHHHhchhh
Confidence            99999999999999999999999999999987766665544332     234443    5667777777765553

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=98.11  E-value=0.00032  Score=56.88  Aligned_cols=140  Identities=16%  Similarity=0.161  Sum_probs=102.6

Q ss_pred             CccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Q 030731            2 SYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLIN-----------VEQQLADIEL   70 (172)
Q Consensus         2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~-----------Le~~~~~Ie~   70 (172)
                      +.+..|.++...++..+......|..++..|+-+.|+.+|.+|..++..+..+..++..           |..+-.+|..
T Consensus        51 a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e  130 (221)
T PF04012_consen   51 ANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEE  130 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567889999999999999999999999999999999999999998877777666554           4445556667


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Q 030731           71 ASKQKAVFESLKSGTNAIKAIQSE---INLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQ  143 (172)
Q Consensus        71 a~~n~~v~~alk~g~~~Lk~~~~~---~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e  143 (172)
                      .+.....+.+=..+..+...++..   ++++.....++.|.+.++..+--.++.....+  +...++.+|+++...
T Consensus       131 ~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~--~~~~~e~~l~~~~~~  204 (221)
T PF04012_consen  131 LKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELAD--SDQDLEAELEELERD  204 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc--CcccHHHHHHHhcCC
Confidence            778888888888888888888764   34556666666666666655555555543321  222377777777643

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK10698 phage shock protein PspA; Provisional

Probab=97.92  E-value=0.0026  Score=52.15  Aligned_cols=142  Identities=13%  Similarity=0.146  Sum_probs=99.5

Q ss_pred             ccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 030731            3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLIN-----------VEQQLADIELA   71 (172)
Q Consensus         3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~-----------Le~~~~~Ie~a   71 (172)
                      ..-.+.++...+...++....+|...+.+|+-+.|+..|.+|+.+...+..+..++..           +..+-.+|+.+
T Consensus        53 ~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea  132 (222)
T PRK10698         53 EKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSET  132 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788889999999999999999999999999999999999988776666555544           44555677788


Q ss_pred             HhHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHhccC----CC----C-CCHHHHHHHHHH
Q 030731           72 SKQKAVFESLKSGTNAIKAIQSEIN---LEDVQKLMDDTEEAKAYQDEINAILGEK----LS----A-EDEEEILAEFDN  139 (172)
Q Consensus        72 ~~n~~v~~alk~g~~~Lk~~~~~~~---id~Ve~~~de~~e~~e~~~EI~e~L~~~----~~----~-~DedELe~EL~~  139 (172)
                      +.-..++.+=..+..+.++++..++   .+..-.-++.|++-++..+--.+++..+    ++    . ..+++++.||+.
T Consensus       133 k~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~~ve~ELa~  212 (222)
T PRK10698        133 RARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADDEISEQLAA  212 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccchHHHHHHH
Confidence            8999999998889999888887654   3333334444555555554444554321    11    0 112346666666


Q ss_pred             HHHHH
Q 030731          140 LEAQV  144 (172)
Q Consensus       140 L~~e~  144 (172)
                      |-..+
T Consensus       213 LK~~~  217 (222)
T PRK10698        213 LKAKM  217 (222)
T ss_pred             HHHHh
Confidence            66554

>TIGR02977 phageshock_pspA phage shock protein A

Probab=97.67  E-value=0.0022  Score=52.28  Aligned_cols=135  Identities=16%  Similarity=0.119  Sum_probs=87.9

Q ss_pred             ccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Q 030731            3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQ-----------QLADIELA   71 (172)
Q Consensus         3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~-----------~~~~Ie~a   71 (172)
                      ..-.+.++...+...+......|+..+..|+-+.|+.+|.+|+.++..+..+..++..+..           +-..|+.+
T Consensus        53 ~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~  132 (219)
T TIGR02977        53 DKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEA  132 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999999999999999999999999999999888777666555443           44445555


Q ss_pred             HhHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 030731           72 SKQKAVFESLKSGTNAIKAIQSE---INLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLE  141 (172)
Q Consensus        72 ~~n~~v~~alk~g~~~Lk~~~~~---~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~  141 (172)
                      +.....+.+=..+..+.+.++..   ++.+..-..++.|.+-++..+--.++... .   +.+.|+.+|+.|+
T Consensus       133 k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~-~---~~~~l~~~l~~l~  201 (219)
T TIGR02977       133 RARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDL-G---RKPSLEDEFAELE  201 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhc-c---CCCCHHHHHHHhc
Confidence            66666555555566666566554   34444444444455544444433344331 1   1233555555554

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=97.16  E-value=0.045  Score=44.50  Aligned_cols=105  Identities=15%  Similarity=0.167  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHH-------HH
Q 030731           49 ELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN-LEDVQKLMDDTEEAKAYQDEIN-------AI  120 (172)
Q Consensus        49 k~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~-id~Ve~~~de~~e~~e~~~EI~-------e~  120 (172)
                      +.+=++..+...|...+.++++.......--++...+.-+......++ +..+.++++.+.-+....+-+.       +.
T Consensus        42 ~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~  121 (204)
T COG5491          42 EELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDEL  121 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334466777777777777777776666665666666666666666676 7777777777666655554444       33


Q ss_pred             hccCCCCCCHHHHHHHHHHHHHHHhhhhhhhhhc
Q 030731          121 LGEKLSAEDEEEILAEFDNLEAQVFAYIQFELAH  154 (172)
Q Consensus       121 L~~~~~~~DedELe~EL~~L~~e~~~~~~~~~~~  154 (172)
                      +.-+.+ .+..+..++++++.+.+.|+++.++.+
T Consensus       122 ~~v~~~-~~v~~~l~~lde~v~~v~pEi~lel~~  154 (204)
T COG5491         122 MDVVVG-DPVLEDLEELDELVNKVLPEIGLELDE  154 (204)
T ss_pred             hccCcc-chhhhhHHHHHHHHHhhchhhhhhhhh
Confidence            333332 355666777777777777777666653

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.03  Score=45.19  Aligned_cols=139  Identities=17%  Similarity=0.142  Sum_probs=101.6

Q ss_pred             cchHHhHHHHHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 030731            4 GLPVMIYSFQLDAVIEAEKQAARDL---IRQKRKDRALLALKKKKAQ-EELLKQVDGWLINVEQQLADIELASKQKAVFE   79 (172)
Q Consensus         4 ~d~L~~~~~~Le~~ie~~~~~aK~~---~k~g~k~~A~~~Lk~KK~~-ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~   79 (172)
                      ++.+.++...++.+|.++..+..+|   +++-+-.-|+..||.|.+- =++---+.++..+|....+..++|....+-++
T Consensus        21 i~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LK  100 (218)
T KOG1655|consen   21 IDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLK  100 (218)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            4678899999999998887776655   5555557799999998873 45566788999999999999999999998888


Q ss_pred             HHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHHh
Q 030731           80 SLKSGTNAIKAIQSEIN----LEDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEILAEFDNLEAQVF  145 (172)
Q Consensus        80 alk~g~~~Lk~~~~~~~----id~Ve~~~de~~e~~e~~~EI~e~L~~~~~-~~DedELe~EL~~L~~e~~  145 (172)
                      -=.....+||.-+++|-    -=+|++| +++++.+++.=+..+=|...++ ..+.-|+++  ++|.+|+.
T Consensus       101 dtq~Tv~AmK~~~k~mK~~ykkvnId~I-edlQDem~Dlmd~a~EiQE~Lgr~y~~peide--~dL~aELd  168 (218)
T KOG1655|consen  101 DTQATVAAMKDTNKEMKKQYKKVNIDKI-EDLQDEMEDLMDQADEIQEVLGRNYNTPDIDE--ADLDAELD  168 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCHHHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCcCH--HHHHHHHH
Confidence            88888889998888764    3344443 5566665555555555555665 577776442  34555554

>PTZ00464 SNF-7-like protein; Provisional

Probab=96.85  E-value=0.08  Score=43.24  Aligned_cols=44  Identities=11%  Similarity=0.040  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC
Q 030731           53 QVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN   96 (172)
Q Consensus        53 k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~   96 (172)
                      .+.+++.++...+++++...+..+....=.....+|+.-++.+.
T Consensus        72 ~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK  115 (211)
T PTZ00464         72 MYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLK  115 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777777777777777776666666666666665543

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=96.81  E-value=0.22  Score=41.06  Aligned_cols=136  Identities=17%  Similarity=0.150  Sum_probs=94.5

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhH
Q 030731            6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVE-----------QQLADIELASKQ   74 (172)
Q Consensus         6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le-----------~~~~~Ie~a~~n   74 (172)
                      .+..+...+..+++.....|+..+..|+-..|...|-++..|++.+..+...+..+.           .+-.+|......
T Consensus        56 ~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~  135 (225)
T COG1842          56 QLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK  135 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677788888899999999999999999999999999999987776666555443           344556666778


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Q 030731           75 KAVFESLKSGTNAIKAIQSEI---NLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEA  142 (172)
Q Consensus        75 ~~v~~alk~g~~~Lk~~~~~~---~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~  142 (172)
                      +.++.+=....++-..+++.+   +.+..-..++.|++-++....-.++.+.-. ....++++.|++.+..
T Consensus       136 ~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~el~-~~~~~dl~~e~a~~~~  205 (225)
T COG1842         136 KEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAELA-EGSGDDLDKEFAQAGA  205 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhh-ccCcccHHHHHHHhcc
Confidence            888888888888888877654   344445555555555555555555554310 2233556677777665

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=96.67  E-value=0.0036  Score=48.10  Aligned_cols=152  Identities=18%  Similarity=0.134  Sum_probs=86.3

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 030731            6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKK-----AQEELLKQVDGWLINVEQQLADIELASKQKAVFES   80 (172)
Q Consensus         6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK-----~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~a   80 (172)
                      .|+..+..|+.++..+..+++.+-     ..|+.+++...     .+=+..-.+..++.++.....+++......+....
T Consensus         5 ~Lk~~~~~L~~~~~~le~~i~~~~-----~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~   79 (171)
T PF03357_consen    5 KLKKTIRRLEKQIKRLEKKIKKLE-----KKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQS   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCH-----HHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578888999999999999888764     56777776533     24455667788888888999999999888888888


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHH--HHHHHHHHHHHHHH---HhccCCCC-CC--HHHHHHHHHHHHHHHhhhhhhhh
Q 030731           81 LKSGTNAIKAIQSEINLEDVQKLMD--DTEEAKAYQDEINA---ILGEKLSA-ED--EEEILAEFDNLEAQVFAYIQFEL  152 (172)
Q Consensus        81 lk~g~~~Lk~~~~~~~id~Ve~~~d--e~~e~~e~~~EI~e---~L~~~~~~-~D--edELe~EL~~L~~e~~~~~~~~~  152 (172)
                      ......+|+..++.+.  ++.+-++  ++.+.++...+..+   .++..+++ .+  ++.-++|+++...++..+...+.
T Consensus        80 ~~~v~~al~~~~~~Lk--~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~  157 (171)
T PF03357_consen   80 NQQVVKALKQSSKALK--KINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEE  157 (171)
T ss_dssp             HHHHSSS----SHHHH--HHHHSTTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS
T ss_pred             HHHHHHHHHHHHHHHH--HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            8888888877665543  3333332  34444333333332   33445554 43  46667778877777776654333


Q ss_pred             hcccCCCCCCCCCCccc
Q 030731          153 AHNFYYSVLPFPHFSLS  169 (172)
Q Consensus       153 ~~~~~~~~~~~p~~~~~  169 (172)
                      .     ....+|.+|++
T Consensus       158 ~-----~~~~lp~~P~~  169 (171)
T PF03357_consen  158 E-----EKQQLPSVPST  169 (171)
T ss_dssp             -------SS-SS---HH
T ss_pred             h-----ccccCCcCCCC
Confidence            2     23455666543

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.35  E-value=1.2  Score=36.09  Aligned_cols=146  Identities=17%  Similarity=0.144  Sum_probs=101.0

Q ss_pred             cchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 030731            4 GLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELL---KQVDGWLINVEQQLADIELASKQKAVFES   80 (172)
Q Consensus         4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l---~k~~~~l~~Le~~~~~Ie~a~~n~~v~~a   80 (172)
                      |..|..+.++|-..|.+.   ||+---..-|..|+.+.|.|.+..+..   .++.+....++++...-.-++.-+-+-.+
T Consensus        32 r~~le~qeKklvaeIKk~---AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTka  108 (224)
T KOG3230|consen   32 RQKLELQEKKLVAEIKKT---AKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKA  108 (224)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            446677777777777655   555444445789999999988876543   45666778888999998899999999999


Q ss_pred             HHHHHHHHHHH--hcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhhhhhhhhcccC
Q 030731           81 LKSGTNAIKAI--QSE-INLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFAYIQFELAHNFY  157 (172)
Q Consensus        81 lk~g~~~Lk~~--~~~-~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~~~~~~~~~~~~  157 (172)
                      |..-|..|.--  .+- +..++=.++||--+|.+.  +-|+++|+   ++.||+|-++=-+....|+.-++.+.+...|+
T Consensus       109 m~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~--daIDdal~---~~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~  183 (224)
T KOG3230|consen  109 MAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMD--DAIDDALG---DDEDEEETDDLVNQVLDEIGVDLASQLSSLPS  183 (224)
T ss_pred             HHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhc---ccchhHHHHHHHHHHHHHHcccHHHHhccCcc
Confidence            99888765432  222 246666777776666643  34566665   25677777777777778887666655555555

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=94.35  E-value=1.4  Score=35.88  Aligned_cols=140  Identities=11%  Similarity=-0.018  Sum_probs=90.8

Q ss_pred             ccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 030731            3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLK   82 (172)
Q Consensus         3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk   82 (172)
                      |+.++..-.+...+......++.+.+..++. ..|..++|-+    ++..++......|+..-..+........|...+.
T Consensus         8 ~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~-~l~~~~~~~~----~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~   82 (204)
T COG5491           8 QAKKLVRELKQEAKKGQVLLNEIAKKAPNRR-RLAEELYKLR----KARSRLDASISRLQSLDTMLFEKVVMRQVSGDMA   82 (204)
T ss_pred             HHHHhhhhhhhHhHHHHHHHHHhccchhHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3444555555555556655555555443332 2344444433    4456677777788888888888888888888888


Q ss_pred             HHHHHHHHHhcC--C-C-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhh
Q 030731           83 SGTNAIKAIQSE--I-N-LEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFAY  147 (172)
Q Consensus        83 ~g~~~Lk~~~~~--~-~-id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~~  147 (172)
                      .++..++.+..=  + . ++.+...|+-.+.-++.+.+..+...+.-...+.++++++++.+.-|+.-+
T Consensus        83 ~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~le  151 (204)
T COG5491          83 KAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLE  151 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhh
Confidence            888888755432  2 2 666667777777666788777776665333557788999999888777533

>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

Probab=91.83  E-value=3.3  Score=36.98  Aligned_cols=51  Identities=4%  Similarity=-0.001  Sum_probs=31.9

Q ss_pred             CccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 030731            2 SYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLK   52 (172)
Q Consensus         2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~   52 (172)
                      |||++|.--.+.--+++.+.+..+|..+..++-.--+.+|--|++.|.-.+
T Consensus        28 s~~ekle~dlk~~ikklq~~rdqiktw~s~~dikdk~~l~~nrrlie~~me   78 (548)
T COG5665          28 SHREKLESDLKREIKKLQKHRDQIKTWLSKEDVKDKQVLMTNRRLIENGME   78 (548)
T ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHhHHHHHhHHH
Confidence            567777665555556667778888888877664444445555555554333

>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein)

Probab=90.71  E-value=2.4  Score=28.53  Aligned_cols=50  Identities=18%  Similarity=0.175  Sum_probs=43.9

Q ss_pred             chHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 030731            5 LPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQV   54 (172)
Q Consensus         5 d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~   54 (172)
                      +.|..-...++.++..+...+..++..++...|+..+++-+++.+.++.+
T Consensus        27 ~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~~i   76 (78)
T PF07743_consen   27 AELEELKKEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLEEI   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence            56778888999999999999999999999999999999999998877654

HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.96  E-value=17  Score=32.82  Aligned_cols=152  Identities=22%  Similarity=0.168  Sum_probs=85.4

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 030731            6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKK--KKA---QEELLKQVDGWLINVEQQLADIELASKQKAVFES   80 (172)
Q Consensus         6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~--KK~---~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~a   80 (172)
                      .|.+-+..|.++|+.+.++|+++=     ..|+.++|.  |++   |=+..-.....+......+.++++..++..--..
T Consensus       237 ~L~~~~~~L~kqie~L~qeie~~~-----~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~  311 (439)
T KOG2911|consen  237 DLIQARAKLAKQIEFLEQEIEKSK-----EKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQT  311 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence            577888899999999999998764     455555554  222   2233334445566666667777776666555444


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHH---HHHHHHHHHHHHHHHhccC------CCCCCHHHHHHHHHHHHHHHhhhhhhh
Q 030731           81 LKSGTNAIKAIQSEINLEDVQKLMD---DTEEAKAYQDEINAILGEK------LSAEDEEEILAEFDNLEAQVFAYIQFE  151 (172)
Q Consensus        81 lk~g~~~Lk~~~~~~~id~Ve~~~d---e~~e~~e~~~EI~e~L~~~------~~~~DedELe~EL~~L~~e~~~~~~~~  151 (172)
                      =+....|++.     +.+-+..++.   .....-+..++|.+.+.+.      +....-..++.|=++|+.|..+-.   
T Consensus       312 nkvvl~Ayks-----Gs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~---  383 (439)
T KOG2911|consen  312 NKVVLQAYKS-----GSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLE---  383 (439)
T ss_pred             cHHHHHHHHH-----hHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHH---
Confidence            4444444442     2333344443   1112233356666666543      223333334445556777766443   


Q ss_pred             hhcccCCCCCCCCCCccccc
Q 030731          152 LAHNFYYSVLPFPHFSLSKQ  171 (172)
Q Consensus       152 ~~~~~~~~~~~~p~~~~~~~  171 (172)
                       .+.-.+.++-.|..|+|.-
T Consensus       384 -~D~~k~e~~~lp~~~~sr~  402 (439)
T KOG2911|consen  384 -ADEKKNEDLVLPLNSVSRD  402 (439)
T ss_pred             -hccccCCccCCCCCCchHH
Confidence             3444556777888887753

>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A

Probab=87.66  E-value=3.9  Score=26.80  Aligned_cols=43  Identities=26%  Similarity=0.198  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 030731           12 FQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQV   54 (172)
Q Consensus        12 ~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~   54 (172)
                      +.|+.|.+....-|.++-++|+-..|+.++|.-|.++..|...
T Consensus         2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~   44 (59)
T smart00685        2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAA   44 (59)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHH
Confidence            3577888888888899999999999999999999999888654

3 and human FLJ20241.

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=85.87  E-value=17  Score=29.32  Aligned_cols=118  Identities=14%  Similarity=0.031  Sum_probs=78.7

Q ss_pred             cchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 030731            4 GLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKA-----QEELLKQVDGWLINVEQQLADIELASKQKAVF   78 (172)
Q Consensus         4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~-----~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~   78 (172)
                      +..|+..+..|+++......++.+..     ..|+.+++..+.     +=+.--.+..++.++...+++++......+..
T Consensus        29 Il~Lk~~~~~L~krq~~Le~kIe~e~-----~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a  103 (191)
T PTZ00446         29 ILKNREAIDALEKKQVQVEKKIKQLE-----IEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENM  103 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678888888888888877776544     356766665442     22333456788888999999999988888888


Q ss_pred             HHHHHHHHHHHHHhcCCC-H-HH--HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030731           79 ESLKSGTNAIKAIQSEIN-L-ED--VQKLMDDTEEAKAYQDEINAILGEKLSA  127 (172)
Q Consensus        79 ~alk~g~~~Lk~~~~~~~-i-d~--Ve~~~de~~e~~e~~~EI~e~L~~~~~~  127 (172)
                      ..=.....+|+.-++.+. + ..  |++ +|++.+.+..+-+.++=|+..++.
T Consensus       104 ~~~~ev~~aLk~g~~aLK~~~k~~~idk-Vd~lmDei~E~~e~~~EIseaLs~  155 (191)
T PTZ00446        104 HLHKIAVNALSYAANTHKKLNNEINTQK-VEKIIDTIQENKDIQEEINQALSF  155 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence            877777777877776554 1 11  222 345555555555666667777764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=84.64  E-value=32  Score=31.42  Aligned_cols=89  Identities=18%  Similarity=0.136  Sum_probs=57.1

Q ss_pred             CccchHHhHHHHHHH-HHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 030731            2 SYGLPVMIYSFQLDA-VIEAEKQAARDLIRQKR--KDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVF   78 (172)
Q Consensus         2 ~~~d~L~~~~~~Le~-~ie~~~~~aK~~~k~g~--k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~   78 (172)
                      |||..-.++...+++ +++..+......+.+.+  +..-......|+..|+.+.++...+..+..-+..+.  ..|+.+.
T Consensus       332 Sqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~--E~n~~l~  409 (493)
T KOG0804|consen  332 SQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER--EENKKLI  409 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            566666666666666 66665555555555432  234445667788888888888888888877777666  5566666


Q ss_pred             HHHHHHHHHHHHHh
Q 030731           79 ESLKSGTNAIKAIQ   92 (172)
Q Consensus        79 ~alk~g~~~Lk~~~   92 (172)
                      +-...-..-++.+.
T Consensus       410 knq~vw~~kl~~~~  423 (493)
T KOG0804|consen  410 KNQDVWRGKLKELE  423 (493)
T ss_pred             hhHHHHHHHHHHHH
Confidence            55555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens} Length = 79

 Score = 40.7 bits (95), Expect = 1e-05
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 14 LDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
          L+  IE E  AA+     K K  AL ALK+KK  E+ L Q+DG L  +E Q   +E
Sbjct: 25 LEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 79

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 48/155 (30%)

Query: 10  YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQV-DGWLINVEQQLADI 68
           +S  +   I + +   R L++ K  +  LL          +L  V +    N      ++
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLL----------VLLNVQNAKAWNA----FNL 264

Query: 69  E----LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLM--DDTEE--AKA----YQD- 115
                L ++ K V + L + T       + I+L+     +  D+ +    K      QD 
Sbjct: 265 SCKILLTTRFKQVTDFLSAAT------TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 116 -----EIN----AILGEKLSAEDEEEILAEFDNLE 141
                  N    +I+ E +      + LA +DN +
Sbjct: 319 PREVLTTNPRRLSIIAESIR-----DGLATWDNWK 348

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	99.66
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	99.53
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	99.46
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	99.42
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	98.85
2lxm_B	57	Charged multivesicular BODY protein 5; MIT, protei	97.71
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	97.0
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	94.99
3htu_B	39	Vacuolar protein-sorting-associated protein 20; ES	91.59
3uly_B	69	Charged multivesicular BODY protein 5; beta-hairpi	88.72

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=99.66  E-value=4.2e-17  Score=128.06  Aligned_cols=140  Identities=19%  Similarity=0.218  Sum_probs=106.4

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 030731            6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKD----RALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESL   81 (172)
Q Consensus         6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~----~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~al   81 (172)
                      .|.+++.+|+..-......+|+++++|++.    .|+.++|.||.    ..++.....+|+.+.++++++.++..|..+|
T Consensus        25 ~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~----~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am  100 (179)
T 2gd5_A           25 VVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA----VSKLYASKAHMNSVLMGMKNQLAVLRVAGSL  100 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666777777777788899999999875    68888888876    5666778999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHhhhhh
Q 030731           82 KSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-EDEEEILAEFDNLEAQVFAYIQ  149 (172)
Q Consensus        82 k~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~-~DedELe~EL~~L~~e~~~~~~  149 (172)
                      +.|+++|+.+|+.|++++|..+|++|.++.+++++|+++|+.++++ .|+++.++|.+++...+.++++
T Consensus       101 ~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~E~~  169 (179)
T 2gd5_A          101 QKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEIT  169 (179)
T ss_dssp             CCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTCCC-
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999864 3556667777777777776654

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=99.53  E-value=3.3e-14  Score=97.88  Aligned_cols=67  Identities=36%  Similarity=0.292  Sum_probs=63.6

Q ss_pred             CccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731            2 SYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE   69 (172)
Q Consensus         2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie   69 (172)
                      .++|.|.+|++.|+.+|+.+...||+++ .++|.+|+.+||+||+||++|+++.++++||++++..||
T Consensus        13 ~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE   79 (79)
T 4abm_A           13 DTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE   79 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3689999999999999999999999999 677899999999999999999999999999999999885

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=99.46  E-value=8.1e-14  Score=112.56  Aligned_cols=144  Identities=17%  Similarity=0.196  Sum_probs=102.8

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 030731            6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGT   85 (172)
Q Consensus         6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~   85 (172)
                      .|.+.+..|+..=......+|+++++|+...|+.+-|---...++..+++....+|..+.+++.++.++..|..+|+.++
T Consensus        25 ~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st  104 (218)
T 3frt_A           25 VVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKST  104 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666666777777888899999999998777666666666666678888999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHhhhhh
Q 030731           86 NAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-EDEEEILAEFDNLEAQVFAYIQ  149 (172)
Q Consensus        86 ~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~-~DedELe~EL~~L~~e~~~~~~  149 (172)
                      .+|+.+|+.|++..|..+|++|..+.++++-+.+++...+++ .++++.++|-+.+...+.++++
T Consensus       105 ~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~  169 (218)
T 3frt_A          105 EVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEIT  169 (218)
T ss_dssp             HHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC-
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998899999887753 2333344445555555554443

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=99.42  E-value=1.1e-12  Score=94.65  Aligned_cols=55  Identities=24%  Similarity=0.523  Sum_probs=50.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHHhhh
Q 030731           93 SEINLEDVQKLMDDTEEAKAYQDEINAILGEKL---SAEDEEEILAEFDNLEAQVFAY  147 (172)
Q Consensus        93 ~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~---~~~DedELe~EL~~L~~e~~~~  147 (172)
                      ++|+||+|+++||+++|++++++||+++|++++   +++|++||++||++|+.+..+.
T Consensus         1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~   58 (104)
T 3um3_B            1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDK   58 (104)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999987   3689999999999999887544

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=98.85  E-value=6.1e-10  Score=71.78  Aligned_cols=51  Identities=25%  Similarity=0.406  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----CCCHHHHHHHHHHHHHHHh
Q 030731           95 INLEDVQKLMDDTEEAKAYQDEINAILGEKLS-----AEDEEEILAEFDNLEAQVF  145 (172)
Q Consensus        95 ~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~-----~~DedELe~EL~~L~~e~~  145 (172)
                      |+||+|++++|+|.+.++..+||+++|+++++     ++|++||++||++|..+..
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~~   56 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQEDF   56 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcccc
Confidence            57999999999999999999999999998764     4899999999999998754

>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}

Probab=97.71  E-value=2.1e-05  Score=50.27  Aligned_cols=35  Identities=29%  Similarity=0.434  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHhccCCC--CCCHHHHHHHHHHHHHHHh
Q 030731          111 KAYQDEINAILGEKLS--AEDEEEILAEFDNLEAQVF  145 (172)
Q Consensus       111 ~e~~~EI~e~L~~~~~--~~DedELe~EL~~L~~e~~  145 (172)
                      ++..+||+++|+++++  ++|++||+.||++|+.+..
T Consensus         1 ~e~a~EIqealsr~~g~~diDEdEL~aELe~LeqE~~   37 (57)
T 2lxm_B            1 MEDANEINEALSRSYGTPELDEDDLEAELDALGDELL   37 (57)
T ss_dssp             ---------------CCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence            3568999999999865  6999999999999998875

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=97.00  E-value=0.00014  Score=56.50  Aligned_cols=35  Identities=3%  Similarity=-0.149  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 030731           47 QEELLKQVDGWLINVEQQLADIELASKQKAVFESL   81 (172)
Q Consensus        47 ~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~al   81 (172)
                      +=+.+-+...+..+|..+..+|++.......+.+.
T Consensus        59 ~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~   93 (179)
T 2gd5_A           59 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAV   93 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455555555555555555554444333

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=94.99  E-value=0.016  Score=46.36  Aligned_cols=144  Identities=16%  Similarity=0.132  Sum_probs=72.4

Q ss_pred             cchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 030731            4 GLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELL---KQVDGWLINVEQQLADIELASKQKAVFES   80 (172)
Q Consensus         4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l---~k~~~~l~~Le~~~~~Ie~a~~n~~v~~a   80 (172)
                      +-+|.+..+++...|...   ||+-=..+=|..|+.+.|.|+...+.+   .++.+....|++......-+.+=..+..+
T Consensus        30 ~~kle~eEkk~~~~IKka---akkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~  106 (218)
T 3frt_A           30 IRDIQREEEKVKRSVKDA---AKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV  106 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666677777666655   444444455788888888888866544   34455555666666666666677777888


Q ss_pred             HHHHHHHH--HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 030731           81 LKSGTNAI--KAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEILAEFDNLEAQVFAYIQFELAHN  155 (172)
Q Consensus        81 lk~g~~~L--k~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~-~~DedELe~EL~~L~~e~~~~~~~~~~~~  155 (172)
                      |+..+..+  ..+.+.|  ++++.=+..+   --..+-++++|....+ ..+++|.+.|.+....|+........|.+
T Consensus       107 M~~~n~~m~l~~i~~tM--~efekE~~k~---~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~~l~~~p~~  179 (218)
T 3frt_A          107 MKAMQSLVKIPEIQATM--RELSKEMMKA---GIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSK  179 (218)
T ss_dssp             HHHHHHSTTSHHHHHHH--HHHHHHHHHH---SCC----------------CTTSTTTHHHHHHHTC-----------
T ss_pred             HHHHHHcCCHHHHHHHH--HHHHHHHHHh---hhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHhHhhcCCCC
Confidence            88888777  4444333  3444444332   1112445666665544 34667778888888888876655555543

>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}

Probab=91.59  E-value=0.066  Score=31.45  Aligned_cols=24  Identities=17%  Similarity=0.158  Sum_probs=18.4

Q ss_pred             CccchHHhHHHHHHHHHHHHHHHH
Q 030731            2 SYGLPVMIYSFQLDAVIEAEKQAA   25 (172)
Q Consensus         2 ~~~d~L~~~~~~Le~~ie~~~~~a   25 (172)
                      .|||+|.+|+++++..++.+++.|
T Consensus        16 ~QRDkL~qyqkri~~~~~rE~eiA   39 (39)
T 3htu_B           16 QQRDKLRQYQKRIAQQLERERALA   39 (39)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhcC
Confidence            389999999999999999877643

>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B

Probab=88.72  E-value=0.35  Score=31.74  Aligned_cols=19  Identities=32%  Similarity=0.557  Sum_probs=17.5

Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 030731          127 AEDEEEILAEFDNLEAQVF  145 (172)
Q Consensus       127 ~~DedELe~EL~~L~~e~~  145 (172)
                      ++|++||+.||++|..++.
T Consensus         7 diDE~eL~aELdaL~~e~~   25 (69)
T 3uly_B            7 ELDEDDLEAELDALGDELL   25 (69)
T ss_pred             CCCHHHHHHHHHHHHHHHh
Confidence            6999999999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1bjta_	760	e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra	0.004

>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 6/137 (4%)

Query: 9   IYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADI 68
           + +   +A+I+  +           K+             E +  V G   + E + +  
Sbjct: 622 VTNKPRNAIIQELENLGFPRFN---KEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSH 678

Query: 69  ELASKQKAVFESLKSGTNAI--KAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS 126
           E         E L      +    I S       QKL+   +E +   + +  +  + + 
Sbjct: 679 EDTENVINGPEELYGTYEYLLGMRIWSLTKER-YQKLLKQKQEKETELENLLKLSAKDIW 737

Query: 127 AEDEEEILAEFDNLEAQ 143
             D +     +     +
Sbjct: 738 NTDLKAFEVGYQEFLQR 754

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1fpoa2	95	HSC20 (HSCB), C-terminal oligomerisation domain {E	91.85

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: HSC20 (HSCB), C-terminal oligomerisation domain
family: HSC20 (HSCB), C-terminal oligomerisation domain
domain: HSC20 (HSCB), C-terminal oligomerisation domain
species: Escherichia coli [TaxId: 562]

Probab=91.85  E-value=0.36  Score=31.50  Aligned_cols=53  Identities=9%  Similarity=0.099  Sum_probs=45.7

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731            6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWL   58 (172)
Q Consensus         6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l   58 (172)
                      .|..-...+..++..+....+.++..|+...|..++++-+.+.+.+..+....
T Consensus        37 ~l~~l~~ei~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLkF~~kl~~ei~~~e   89 (95)
T d1fpoa2          37 RLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQLE   89 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            46677778899999999999999999999999999999999988877665543