Citrus Sinensis ID: 030767

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MSCLSCCHYITRASLIDNTTPSSSHQTSNSNKPPVPKTKPTKIPRKSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHcccccccHHHHHcccccEEEEHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEHcHHHEHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHcHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccEcccccccHHHHcc
Coil and Loop (DISEMBL)
msclscchyitraslidnttpssshqtsnsnkppvpktkptkiprksqqqmplpmqkqdkskqHSVMQIERAIsagtfrdaepkdldqekityngilpdlsgmfegpveKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGviklpfsmpflddlim
Flexible Loop (DISEMBL)
MSCLSCCHYITRAslidnttpssshqtsnsnkppvpktkptkiprksqqqmplpmqkqdkskqHSVMQIERAisagtfrdaepkdlDQEKITYngilpdlsgmFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLpfsmpflddLIM
Low Complexity Region (SEG)
MSCLSCCHYITRASLIDNTTPSSSHQTSNSNkppvpktkptkiprkSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM
Disordered region (IsUnstruct)
**CLSCCHYITRASLI**************************************************************************ITYNGILPDLSGMFEGPVEKQIRETGEWFA**********RKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDD***
Disordered Region (DISOPRED)
*********I******************************************************************************************************RETGEWFAKNSE******RKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM
Disordered Region (DISEMBL)
MSCLSCCHYITRASLIDN************************************************MQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM
Disordered Region (DISPRO)
*SCLSCCHYITRASL*****************************************************************************YNGILPDL*GMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSCLSCCHYITRASLIDNTTPSSSHQTSNSNKPPVPKTKPTKIPRKSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
225424305	154	PREDICTED: uncharacterized protein LOC10	0.865	0.961	0.477	3e-32
255573734	178	conserved hypothetical protein [Ricinus	0.953	0.915	0.446	2e-30
388496138	184	unknown [Medicago truncatula]	0.982	0.913	0.411	1e-28
357438775	184	hypothetical protein MTR_1g031740 [Medic	0.982	0.913	0.406	3e-28
356521129	160	PREDICTED: uncharacterized protein LOC10	0.918	0.981	0.425	3e-28
449449044	165	PREDICTED: uncharacterized protein LOC10	0.795	0.824	0.42	2e-26
224111484	180	predicted protein [Populus trichocarpa]	0.988	0.938	0.439	3e-26
297814396	167	hypothetical protein ARALYDRAFT_346658 [	0.964	0.988	0.421	2e-25
18379259	174	chlororespiratory reduction 3 [Arabidops	0.947	0.931	0.409	3e-25
297737668	222	unnamed protein product [Vitis vinifera]	0.777	0.599	0.437	5e-24

>gi|225424305|ref|XP_002284679.1| PREDICTED: uncharacterized protein LOC100250842 [Vitis vinifera]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 104/159 (65%), Gaps = 11/159 (6%)

Query: 16  IDNTTPSSSHQTSNSNKPPVPKTK---PTKIPRKSQQQMPLPMQKQDKSKQHSVMQIERA 72
           +  +TP +    ++ ++PP+P+ K   PT +P+  + Q P         +Q SV+QIERA
Sbjct: 4   VSMSTPIALASLNHHSQPPLPQPKRIEPTTLPKTKRPQPP--------QRQPSVIQIERA 55

Query: 73  ISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRK 132
           I AG FRD +P+  DQ K  ++ +L +  G  EG VEK++RETGEW    +E   RS+ K
Sbjct: 56  IGAGIFRDRDPRGSDQNKTLFDLLLSNSIGKTEGSVEKKLRETGEWIIDRAEGTSRSAAK 115

Query: 133 GILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 171
            ILMV F W+LP WTL LLVASGV+KLPFS+PFLD+LIM
Sbjct: 116 QILMVTFLWVLPTWTLLLLVASGVLKLPFSIPFLDNLIM 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573734|ref|XP_002527788.1| conserved hypothetical protein [Ricinus communis] gi|223532823|gb|EEF34598.1| conserved hypothetical protein [Ricinus communis]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 23/186 (12%)

Query: 1   MSCLSCCHYITRA----SLIDNTT-----PSSSHQTSNSNKPPVPKTKPTK----IPRKS 47
           M+CLSC H + +A    SL  N       PS  H ++   KP +P TK       +PRK 
Sbjct: 1   MACLSC-HCLAKAFVYASLSTNNNDSVSLPSPPHSSARDPKPSIPTTKTKTTSPTLPRKQ 59

Query: 48  QQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKD-LDQE-KITYNGILPDLSGMFE 105
           + Q  L        KQ ++++IERAI AG++RD+EP   L+Q    T  G+LPD +G  E
Sbjct: 60  RHQSKL-------QKQLNLIRIERAIGAGSYRDSEPNSGLEQHSNSTVQGLLPDDAGGLE 112

Query: 106 GPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPF 165
           G VEK++RETGEW    +E + RSS K ILM  FKW+LP++    LV SG+++LPFS PF
Sbjct: 113 GSVEKKLRETGEWLTDKTEGQFRSSGKQILMFFFKWVLPIYIFMFLVTSGIVELPFSTPF 172

Query: 166 LDDLIM 171
           LDDL+M
Sbjct: 173 LDDLLM 178

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496138|gb|AFK36135.1| unknown [Medicago truncatula]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/187 (41%), Positives = 109/187 (58%), Gaps = 19/187 (10%)

Query: 1   MSCLSCCHYITRASLIDNTT-PSSSHQTSNSNKPPVPKTKPTKIPRKSQQQM-------P 52
           M CL     I +  ++ N T P +   +           K T +P+  +  +       P
Sbjct: 1   MFCLCNNLSINKPIVVTNATLPQNPDSSPPPPPSSSTSPKQTNLPQNKKPSLGSKNSTTP 60

Query: 53  LPMQK-QDKSKQHSVMQIERAISAGTFRDAEP-----KDLDQEKITYNGILPDLSGMFEG 106
           LP  K + +    S+MQIERA+ AG+FRD EP      D D +K T +  L     +FEG
Sbjct: 61  LPPNKLRRRPSPSSLMQIERALGAGSFRDGEPDFKMKNDSDVKKTTMDLFL---GQVFEG 117

Query: 107 PVEKQIRETGEWFAKNSEERLRS--SRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMP 164
            V+K++RETGEW  +N E RLRS  SR+GIL+  F+W++P+W +S L+ASGVIKLPFS+P
Sbjct: 118 TVQKKLRETGEWLGENGETRLRSTSSRRGILVFAFQWMMPIWAISFLIASGVIKLPFSVP 177

Query: 165 FLDDLIM 171
           FLDDL++
Sbjct: 178 FLDDLLL 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438775|ref|XP_003589664.1| hypothetical protein MTR_1g031740 [Medicago truncatula] gi|355478712|gb|AES59915.1| hypothetical protein MTR_1g031740 [Medicago truncatula]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 108/187 (57%), Gaps = 19/187 (10%)

Query: 1   MSCLSCCHYITRASLIDNTT-PSSSHQTSNSNKPPVPKTKPTKIPRKSQQQM-------P 52
           M CL     I +  ++ N T P +   +           K T +P+  +  +       P
Sbjct: 1   MFCLCNNLSINKPIVVTNATLPQNPDSSPPPPPSSSTSPKQTNLPQNKKPSLGSKNSTTP 60

Query: 53  LPMQK-QDKSKQHSVMQIERAISAGTFRDAEP-----KDLDQEKITYNGILPDLSGMFEG 106
           LP  K + +    S+MQIERA+ AG+FRD EP      D D +K T +  L     +FEG
Sbjct: 61  LPPNKLRRRPSPSSLMQIERALGAGSFRDGEPDFKMKNDSDVKKTTMDLFL---GQVFEG 117

Query: 107 PVEKQIRETGEWFAKNSEERLRS--SRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMP 164
            V+K++RETGEW  +N E R RS  SR+GIL+  F+W++P+W +S L+ASGVIKLPFS+P
Sbjct: 118 TVQKKLRETGEWLGENGETRFRSTSSRRGILVFAFQWMMPIWAISFLIASGVIKLPFSVP 177

Query: 165 FLDDLIM 171
           FLDDL++
Sbjct: 178 FLDDLLL 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521129|ref|XP_003529210.1| PREDICTED: uncharacterized protein LOC100810981 [Glycine max]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 104/174 (59%), Gaps = 17/174 (9%)

Query: 1   MSCLSCCHYITRASLIDNTTPSSSHQTSNSNKPPVPKTKPTKIPRKSQQQMPLPMQKQDK 60
           M CLS    I +  + + T P ++         PVP TK   +PR+++ +        + 
Sbjct: 1   MFCLSNLSTI-KPIVANATLPQNNDSDQTKPSIPVPATK--SLPRRNRLR--------NG 49

Query: 61  SKQHSVMQIERAISAGTFRDAEP---KDLDQEKITYNGILPDLSGMFEGPVEKQIRETGE 117
           + + SVMQ+ER + AG+FRD EP   +D D  K   +          EG V+K++RETGE
Sbjct: 50  APKPSVMQMERIVGAGSFRDTEPPPLRDSDMRKTVMDLFF---GQAMEGEVQKKMRETGE 106

Query: 118 WFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 171
           W + N+E R+ SSRKGILM +F+WILP+W + LLVA G IKLPF+ PFLDDL+M
Sbjct: 107 WLSTNAEPRITSSRKGILMFMFQWILPIWAILLLVAFGAIKLPFNSPFLDDLLM 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449044|ref|XP_004142275.1| PREDICTED: uncharacterized protein LOC101205502 [Cucumis sativus]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 97/150 (64%), Gaps = 14/150 (9%)

Query: 28  SNSNKPPV-----PKTKPTKIPRKSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAE 82
           S+S+ PP+       T P   PR  ++ +  P        + S+++IERAI  G FRDA+
Sbjct: 24  SHSHSPPLKTNLAAHTIPINNPRLRRKLLNPP--------RPSLIEIERAIGGGRFRDAD 75

Query: 83  PKDLDQEK-ITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKW 141
           P++L+++K   ++  L   +G +E P+ K++RETGEW    +E + ++S K  L+  F+W
Sbjct: 76  PRELEEDKKAAFDMFLMSFTGKYEAPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQW 135

Query: 142 ILPMWTLSLLVASGVIKLPFSMPFLDDLIM 171
           +LP+W LSLLVASGVIKLPFS PFL++L+M
Sbjct: 136 VLPIWALSLLVASGVIKLPFSTPFLNELLM 165

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111484|ref|XP_002315873.1| predicted protein [Populus trichocarpa] gi|222864913|gb|EEF02044.1| predicted protein [Populus trichocarpa]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/182 (43%), Positives = 106/182 (58%), Gaps = 13/182 (7%)

Query: 1   MSCLSCCHYITR-----ASLIDNTTPSSSHQTSNSNKPPVPKTKPTKIPRKSQQQ---MP 52
           M+CLSC H IT+     ASL  NT   S    ++  +P +P   PT       +    +P
Sbjct: 1   MACLSC-HSITKTLVVFASLPRNTNSPSPQSNTDPKRPSLPVPVPTTTRSTRTKSTTTLP 59

Query: 53  LPMQK--QDKSKQH-SVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVE 109
           LP +K  QD+ +Q  ++M IER + AG++RD E K +DQEK            M EGPVE
Sbjct: 60  LPRKKSVQDRLQQQLNLMNIERVVGAGSYRDYE-KPIDQEKKEKKKKKKMSGFMEEGPVE 118

Query: 110 KQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDL 169
           K++RETGEW    +E   RS+ K ILM  FKW +P++   + VASGVIKLPFS  FLDDL
Sbjct: 119 KKLRETGEWVTTKTEGGFRSNGKRILMFSFKWAIPLYIFMVFVASGVIKLPFSSQFLDDL 178

Query: 170 IM 171
           +M
Sbjct: 179 LM 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814396|ref|XP_002875081.1| hypothetical protein ARALYDRAFT_346658 [Arabidopsis lyrata subsp. lyrata] gi|297320919|gb|EFH51340.1| hypothetical protein ARALYDRAFT_346658 [Arabidopsis lyrata subsp. lyrata]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 107/173 (61%), Gaps = 8/173 (4%)

Query: 1   MSCLSCCHYITRAS--LIDNTTPSSSHQTSNSNKPPVPKTKPTKIPRKSQQQMPLPMQKQ 58
           M+ LS    ITRAS  L+ + T  S     + +K P   +K +K     +QQ+    +KQ
Sbjct: 1   MAVLSTIFSITRASTPLMASLTNDSPSPLPSPSKKPANLSKVSKQMGNQKQQL----RKQ 56

Query: 59  DKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEW 118
            +  + S+ QIERA  AG++RD+E  ++D   + ++ +L   +  FE  +EK++RE GE 
Sbjct: 57  RRGNKPSIAQIERAFGAGSYRDSE-GEMDMNTV-FDELLLGHANKFESKLEKKLREIGEI 114

Query: 119 FAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 171
           F   +E +LRSS K +LM   +WILP+W +SLL+A GVIKLPFS+P LDDLIM
Sbjct: 115 FVARTEPKLRSSGKPVLMFTLQWILPIWIMSLLIACGVIKLPFSLPLLDDLIM 167

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18379259|ref|NP_565266.1| chlororespiratory reduction 3 [Arabidopsis thaliana] gi|3785988|gb|AAC67335.1| expressed protein [Arabidopsis thaliana] gi|14334562|gb|AAK59689.1| unknown protein [Arabidopsis thaliana] gi|21281046|gb|AAM44943.1| unknown protein [Arabidopsis thaliana] gi|330250377|gb|AEC05471.1| chlororespiratory reduction 3 [Arabidopsis thaliana]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 110/183 (60%), Gaps = 21/183 (11%)

Query: 1   MSCLSCCHYITRASLIDNTTPSSSHQTSNSNKPPVPKT------------KPTKIPRKSQ 48
           M+ LS  + ITRAS     TP+ +  T++S  P    +            KP K+ R+  
Sbjct: 1   MAVLSTIYSITRAS-----TPTMASLTNDSPSPLPSSSPSKLPSPTSPSKKPLKL-RQVS 54

Query: 49  QQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPV 108
           +QM     +Q +  + S+ QIERA  +G++RD+E  ++D   + ++ +L   +  FE  +
Sbjct: 55  KQMG-SQNQQRRGNKPSIAQIERAFGSGSYRDSE-GEMDMNTV-FDELLLGHANKFESKI 111

Query: 109 EKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDD 168
           EK++RE GE F   +E +LRSS K +LM   +WILP+W +SLLVA GVIKLPFS+PFLDD
Sbjct: 112 EKKLREIGEIFVARTEPKLRSSGKPVLMFTIQWILPIWIMSLLVACGVIKLPFSIPFLDD 171

Query: 169 LIM 171
           LIM
Sbjct: 172 LIM 174

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737668|emb|CBI26869.3| unnamed protein product [Vitis vinifera]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 89/144 (61%), Gaps = 11/144 (7%)

Query: 16  IDNTTPSSSHQTSNSNKPPVPKTK---PTKIPRKSQQQMPLPMQKQDKSKQHSVMQIERA 72
           +  +TP +    ++ ++PP+P+ K   PT +P+  + Q P         +Q SV+QIERA
Sbjct: 41  VSMSTPIALASLNHHSQPPLPQPKRIEPTTLPKTKRPQPP--------QRQPSVIQIERA 92

Query: 73  ISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRK 132
           I AG FRD +P+  DQ K  ++ +L +  G  EG VEK++RETGEW    +E   RS+ K
Sbjct: 93  IGAGIFRDRDPRGSDQNKTLFDLLLSNSIGKTEGSVEKKLRETGEWIIDRAEGTSRSAAK 152

Query: 133 GILMVVFKWILPMWTLSLLVASGV 156
            ILMV F W+LP WTL LLVASG+
Sbjct: 153 QILMVTFLWVLPTWTLLLLVASGL 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2049572	174	CRR3 "AT2G01590" [Arabidopsis	0.988	0.971	0.392	6.6e-26

TAIR|locus:2049572 CRR3 "AT2G01590" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 69/176 (39%), Positives = 100/176 (56%)

Query:     1 MSCLSCCHYITRASL-----IDNTTPSSSHQTSNSNXXXXXXXXXXXXXXXSQQQMPLPM 55
             M+ LS  + ITRAS      + N +PS    +S S                   +     
Sbjct:     1 MAVLSTIYSITRASTPTMASLTNDSPSPLPSSSPSKLPSPTSPSKKPLKLRQVSKQMGSQ 60

Query:    56 QKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRET 115
              +Q +  + S+ QIERA  +G++RD+E  ++D   + ++ +L   +  FE  +EK++RE 
Sbjct:    61 NQQRRGNKPSIAQIERAFGSGSYRDSEG-EMDMNTV-FDELLLGHANKFESKIEKKLREI 118

Query:   116 GEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 171
             GE F   +E +LRSS K +LM   +WILP+W +SLLVA GVIKLPFS+PFLDDLIM
Sbjct:   119 GEIFVARTEPKLRSSGKPVLMFTIQWILPIWIMSLLVACGVIKLPFSIPFLDDLIM 174


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       156   0.00073  106 3  11 22  0.49    31
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  147 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:06
  No. of threads or processors used:  24
  Search cpu time:  17.68u 0.07s 17.75t   Elapsed:  00:00:18
  Total cpu time:  17.68u 0.07s 17.75t   Elapsed:  00:00:24
  Start:  Thu May  9 20:01:31 2013   End:  Thu May  9 20:01:55 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=TAS

GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=NAS

GO:0016020 "membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00