Citrus Sinensis ID: 030842

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MALSLSLHLPVTPVLPKAYVQSKPPPVSHYISLRRLRLTSATALGKNRSVLVKAVERSQESAEKSETVNEPESEPANPATESSAELSELGSEIKKVLKEKKEEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGVQDFFR
Secondary Structure (PSIPRED)
ccccEEEccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccccccccccccccEEEEEccccccccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccHcccHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHccccHHHHcc
Coil and Loop (DISEMBL)
malslslhlpvtpvlpkayvqskpppvshyisLRRLRLTSATALGKNRSVLVKAVERSqesaeksetvnepesepanpatessAELSELGSEIKKVLKEKKEEKAGDLLSGVgeeireiewpafgkvlgTTGVVLGVIAGSSVVLLTVNFVLAElsdrafagrgvqdffr
Flexible Loop (DISEMBL)
MALSLSLHLPVTpvlpkayvqskpppvSHYISLRRLRLTsatalgknrsvLVKAversqesaeksetvnepesepanpatessaelsELGSEIKKVlkekkeekagdllsgvgeeireiewPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAelsdrafagrgvqdffr
Low Complexity Region (SEG)
MALSLSLHLPVTPVLPKAYVQSKPPPVSHYIslrrlrltsatalGKNRSVLVKAVERSQESAEKSETVNEPESEPANPATessaelselgseikkvlkekkeekAGDLLSGVGEEIREIEWPAFgkvlgttgvvlgvIAGSSVVLLTVNFVLAELSDRAFAGRGVQDFFR
Disordered region (IsUnstruct)
********LPVTPVLPKAYV******VSHYISLRRLRLTSATALG***************************************************************LSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGV*****
Disordered Region (DISOPRED)
**************************************************************************************************************GVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGVQDFFR
Disordered Region (DISEMBL)
MALSLSLHLPVTPVLPKAYVQSKPPPVSHYISLRRLRLTSATALGKNRSVL*************************************LGSEIKKVLKEKKEEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGVQDFFR
Disordered Region (DISPRO)
*ALSLSLHLPVTPVLPKAYVQSKPPPVSHYISLRRLRLTSATALGKNRSVLVKAVE*******************************E*GSEIKKVLKEKKEEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGVQDFFR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALSLSLHLPVTPVLPKAYVQSKPPPVSHYISLRRLRLTSATALGKNRSVLVKAVERSQESAEKSETVNEPESEPANPATESSAELSELGSEIKKVLKEKKEEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGVQDFFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
O23342	177	Preprotein translocase su	yes	no	0.958	0.920	0.478	4e-32

>sp|O23342|SECE1_ARATH Preprotein translocase subunit SECE1 OS=Arabidopsis thaliana GN=SECE1 PE=1 SV=1

 Score =  137 bits (344), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 121/182 (66%), Gaps = 19/182 (10%)

Query: 1   MALSLSLHLPVTPVLPKAYVQSKPPPVSH---YISLRRLRLTSATALGKNRSVLVKAVER 57
           M+L+     PVT +     ++   P +S+   +     +R  + + L K+   + KA+E+
Sbjct: 1   MSLTAQFSPPVTGITRS--LRDTKPSLSNLRVFPVYTEIRTMTTSNLRKSACFVAKAIEQ 58

Query: 58  SQESAEKSETVNEPESEPANPATESSA------ELSELGSEIKKVLKEKK--EEKAG--D 107
            +++A  SE+  E E+ P+ PA ES +      E+S +G+EIK  ++++K  EE+ G  +
Sbjct: 59  RRDTA-GSES--ESEATPS-PAEESGSGEDKEVEISAIGAEIKAAMEQRKTAEEEKGKNE 114

Query: 108 LLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGVQD 167
            LSGV EE++EIEWPAF KVLGTTGVVLGVIAGSSVVLLTVNF+LAELSDR F GRGVQD
Sbjct: 115 FLSGVAEEVKEIEWPAFQKVLGTTGVVLGVIAGSSVVLLTVNFLLAELSDRVFIGRGVQD 174

Query: 168 FF 169
           FF
Sbjct: 175 FF 176

Involved in the import/insertion pathway in the thylakoids. The signal recognition particle is not involved in the insertion of SECE1 in the thylakoid membrane.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
224102067	172	predicted protein [Populus trichocarpa]	0.941	0.930	0.544	2e-35
449504173	179	PREDICTED: preprotein translocase subuni	0.941	0.893	0.475	7e-33
449432698	179	PREDICTED: preprotein translocase subuni	0.952	0.905	0.475	2e-32
255552173	167	conserved hypothetical protein [Ricinus	0.923	0.940	0.528	9e-32
18414331	177	secE/sec61-gamma protein transport prote	0.958	0.920	0.478	2e-30
297804782	177	protein translocase [Arabidopsis lyrata	0.982	0.943	0.466	4e-29
21592611	177	unknown [Arabidopsis thaliana]	0.935	0.898	0.467	6e-29
388513135	161	unknown [Lotus japonicus]	0.558	0.590	0.611	4e-27
357486619	159	hypothetical protein MTR_5g038520 [Medic	0.488	0.522	0.674	1e-24
388508532	159	unknown [Medicago truncatula]	0.488	0.522	0.662	3e-24

>gi|224102067|ref|XP_002312532.1| predicted protein [Populus trichocarpa] gi|222852352|gb|EEE89899.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 119/180 (66%), Gaps = 20/180 (11%)

Query: 1   MALS-LSLHLPVT-----PVLPKAYVQSKPPPVSHYI---SLRRLRLTSATALGKNRSVL 51
           MALS LS+ LP+T     P      +Q KPPP+S  I     + L +T +    +     
Sbjct: 1   MALSSLSIKLPLTQPPSKPTHSNPTLQFKPPPLSFNIFQSHPKILTITHSKTKERRGCFA 60

Query: 52  VKAVERSQESAEKSETVNEP--ESEPANPATESSAELSELGSEIKKVLKEKKEEKAGDLL 109
           +KAVE+  ES E SE V +P  ESEP +  T       ELG+EIKK + E+K ++ G+  
Sbjct: 61  IKAVEK--ESTE-SEAVEKPGMESEPESSVT------GELGAEIKKAMMERKSKEEGNFW 111

Query: 110 SGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGVQDFF 169
           SGV EEI+EIEWPAFGKVLGTTGVV+GVI GSSVVLLTVN VLAELSDR FAGRG+QDFF
Sbjct: 112 SGVAEEIQEIEWPAFGKVLGTTGVVIGVIVGSSVVLLTVNAVLAELSDRVFAGRGLQDFF 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449504173|ref|XP_004162272.1| PREDICTED: preprotein translocase subunit SECE1-like [Cucumis sativus]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 89/187 (47%), Positives = 110/187 (58%), Gaps = 27/187 (14%)

Query: 1   MALSLSLHLPVTPV------------LPKAYVQSKPPPVSHYISLRRLRLTSATALGKNR 48
           MA+ +SL  P  P             L ++      P   H I    +R         NR
Sbjct: 1   MAVPISLKFPTVPSTLTNRTASLFVPLRRSSPHHSYPHSQHTIRFPTIR--------SNR 52

Query: 49  SVLVKAVERSQESAEKSET------VNEPESEPANPATESSAELSELGSEIKKVLKEKKE 102
           +V   AV   QES E +E+         P  EP   A +S+   + LG+EI++ LK++K 
Sbjct: 53  NVKFSAVNAVQESQENTESDGVEVQAGPPTEEPKT-ADQSAESGANLGAEIQEALKQQKV 111

Query: 103 EKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAG 162
           EK GDL+ GV EEI+EIEWPAF KVLGTTGVV+GVIAGSSVVLLTVN +LAELSDR FAG
Sbjct: 112 EKEGDLIGGVAEEIKEIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAG 171

Query: 163 RGVQDFF 169
           +GVQDFF
Sbjct: 172 KGVQDFF 178

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432698|ref|XP_004134136.1| PREDICTED: preprotein translocase subunit SECE1-like [Cucumis sativus]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/185 (47%), Positives = 114/185 (61%), Gaps = 23/185 (12%)

Query: 1   MALSLSLHLPVTPVLPKAYVQSKPPPVSHYISLRRLRLTSAT----------ALGKNRSV 50
           MA+ +SL  P  P    + + ++    S ++ LRR     +            +  NR+V
Sbjct: 1   MAVPISLKFPTVP----STLTNRT--ASLFVPLRRSSPHHSHPHSQHTIRFPTIRSNRNV 54

Query: 51  LVKAVERSQESAEKSET------VNEPESEPANPATESSAELSELGSEIKKVLKEKKEEK 104
              AV   QES E +E+         P  EP   A +S+   + LG+EI++ LK++K EK
Sbjct: 55  KFSAVNAVQESQENTESDGVEVQAGPPTEEPKT-ADQSAESGANLGAEIQEALKQQKVEK 113

Query: 105 AGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRG 164
            GDL+ GV EEI+EIEWPAF KVLGTTGVV+GVIAGSSVVLLTVN +LAELSDR FAG+G
Sbjct: 114 EGDLIGGVAEEIKEIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKG 173

Query: 165 VQDFF 169
           VQDFF
Sbjct: 174 VQDFF 178

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552173|ref|XP_002517131.1| conserved hypothetical protein [Ricinus communis] gi|223543766|gb|EEF45294.1| conserved hypothetical protein [Ricinus communis]

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 94/178 (52%), Positives = 113/178 (63%), Gaps = 21/178 (11%)

Query: 1   MAL-SLSLHLPVTPVL----PKAYVQSKPPPVSHYISLRRLRLTSATALGKNRSVLVKAV 55
           MAL SLSL +P+TP L    P A +Q K PP +        +L  A A  +N  ++ +AV
Sbjct: 1   MALTSLSLKVPITPPLRITRPNACLQFKSPPATSSPLFIHRKLLIANAKSRNGILIRRAV 60

Query: 56  ERSQES----AEKSETVNEPESEPANPATESSAELSELGSEIKKVLKEKKEEKAGDLLSG 111
           E S+ES    A K   + E ES             +E+G+EIKK + E+K+ +   LLSG
Sbjct: 61  EESKESTESEATKEADITEEESG------------AEIGAEIKKAMMERKKAEKEGLLSG 108

Query: 112 VGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGVQDFF 169
           V EE+ EIEWPAFGKVLGTTGVVLGVIA SSV LLTVN VLAELSD  FAGRGVQDFF
Sbjct: 109 VAEEVEEIEWPAFGKVLGTTGVVLGVIAASSVFLLTVNAVLAELSDTVFAGRGVQDFF 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414331|ref|NP_567446.1| secE/sec61-gamma protein transport protein [Arabidopsis thaliana] gi|75274936|sp|O23342.1|SECE1_ARATH RecName: Full=Preprotein translocase subunit SECE1; Flags: Precursor gi|2244844|emb|CAB10266.1| hypothetical protein [Arabidopsis thaliana] gi|7268233|emb|CAB78529.1| hypothetical protein [Arabidopsis thaliana] gi|15027941|gb|AAK76501.1| unknown protein [Arabidopsis thaliana] gi|20465399|gb|AAM20124.1| unknown protein [Arabidopsis thaliana] gi|332658111|gb|AEE83511.1| secE/sec61-gamma protein transport protein [Arabidopsis thaliana]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 121/182 (66%), Gaps = 19/182 (10%)

Query: 1   MALSLSLHLPVTPVLPKAYVQSKPPPVSH---YISLRRLRLTSATALGKNRSVLVKAVER 57
           M+L+     PVT +     ++   P +S+   +     +R  + + L K+   + KA+E+
Sbjct: 1   MSLTAQFSPPVTGITRS--LRDTKPSLSNLRVFPVYTEIRTMTTSNLRKSACFVAKAIEQ 58

Query: 58  SQESAEKSETVNEPESEPANPATESSA------ELSELGSEIKKVLKEKK--EEKAG--D 107
            +++A  SE+  E E+ P+ PA ES +      E+S +G+EIK  ++++K  EE+ G  +
Sbjct: 59  RRDTA-GSES--ESEATPS-PAEESGSGEDKEVEISAIGAEIKAAMEQRKTAEEEKGKNE 114

Query: 108 LLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGVQD 167
            LSGV EE++EIEWPAF KVLGTTGVVLGVIAGSSVVLLTVNF+LAELSDR F GRGVQD
Sbjct: 115 FLSGVAEEVKEIEWPAFQKVLGTTGVVLGVIAGSSVVLLTVNFLLAELSDRVFIGRGVQD 174

Query: 168 FF 169
           FF
Sbjct: 175 FF 176

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804782|ref|XP_002870275.1| protein translocase [Arabidopsis lyrata subsp. lyrata] gi|297316111|gb|EFH46534.1| protein translocase [Arabidopsis lyrata subsp. lyrata]

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/178 (46%), Positives = 113/178 (63%), Gaps = 11/178 (6%)

Query: 1   MALSLSLHLPVTPVLPKAYVQSKPPPVSHYI--SLRRLRLTSATALGKNRSVLVKAVERS 58
           M+L+     PVT    ++    K PP S  +      +R     +L K+   + KA+E+ 
Sbjct: 1   MSLTAQFSPPVTGKT-RSVRDLKSPPSSLRVFPVYTDIRTPEMRSLKKSSYQVAKAIEQR 59

Query: 59  QESA---EKSETVNEPESEPANPATESSAELSELGSEIKKVLKEKK--EEKAG--DLLSG 111
           +++A    +SE    P  E  N   +   E++ +G+EIK  ++++K  EE+ G  + LSG
Sbjct: 60  RDTAGSESESEATPSPAEESGN-GGDKEVEINAIGAEIKAAMEQRKAAEEEKGKNEFLSG 118

Query: 112 VGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGVQDFF 169
           V EE++EIEWPAF KVLGTTGVVLGVIAGSSVVLLTVNF+LAELSDR F G+GVQDFF
Sbjct: 119 VAEEVKEIEWPAFQKVLGTTGVVLGVIAGSSVVLLTVNFLLAELSDRVFIGKGVQDFF 176

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592611|gb|AAM64560.1| unknown [Arabidopsis thaliana]

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/186 (46%), Positives = 122/186 (65%), Gaps = 27/186 (14%)

Query: 1   MALSLSLHLPVTPVLPKAYVQSKPPPVSHYISLRR-------LRLTSATALGKNRSVLVK 53
           M+L+     PVT +  ++   +KP      +S RR       +R  + +   K+   + K
Sbjct: 1   MSLTAQFSPPVTGIT-RSPRDTKP-----SLSTRRVFPVYTEIRTMTTSNPRKSACFVAK 54

Query: 54  AVERSQESAEKSETVNEPESEPANPATESSA------ELSELGSEIKKVLKEKK--EEKA 105
           A+E+ +++A  SE+  E E+ P+ PA ES +      E++ +G+EIK  ++++K  EE+ 
Sbjct: 55  AIEQRRDTA-GSES--ESEATPS-PAEESGSGKDKEVEINAIGAEIKAAMEQRKAAEEEK 110

Query: 106 G--DLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGR 163
           G  + LSGV EE++EIEWPAF KVLGTTGVVLGV+AGSSVVLLTVNF+LAELSDR F GR
Sbjct: 111 GKNEFLSGVAEEVKEIEWPAFQKVLGTTGVVLGVVAGSSVVLLTVNFLLAELSDRVFIGR 170

Query: 164 GVQDFF 169
           GVQDFF
Sbjct: 171 GVQDFF 176

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513135|gb|AFK44629.1| unknown [Lotus japonicus]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 81/108 (75%), Gaps = 13/108 (12%)

Query: 63  EKSETVNEPESEPANPATESSAELSELGSEIKKVLKEKKEEKAGD-LLSGVGEEIREIEW 121
           E+++   EPE E            SEL SE+KK ++E+K+++ GD   +GV +EI EIEW
Sbjct: 65  EENQQSTEPEPE------------SELASELKKAMQERKDKEGGDNFWNGVAQEINEIEW 112

Query: 122 PAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAGRGVQDFF 169
           PAFGKVLGTTGVVL VI GSSVVLLTVN VLAELSD+AFAG+G+QDFF
Sbjct: 113 PAFGKVLGTTGVVLSVIFGSSVVLLTVNAVLAELSDKAFAGKGIQDFF 160

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486619|ref|XP_003613597.1| hypothetical protein MTR_5g038520 [Medicago truncatula] gi|355514932|gb|AES96555.1| hypothetical protein MTR_5g038520 [Medicago truncatula]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/83 (67%), Positives = 68/83 (81%)

Query: 87  SELGSEIKKVLKEKKEEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLL 146
           SEL SE+KK ++E+KE++  +  +GV  EI EIEWP FGKVLGTTGVVL VI GSS VLL
Sbjct: 76  SELASELKKAMQERKEQEGNNFWNGVVSEIGEIEWPEFGKVLGTTGVVLSVIFGSSAVLL 135

Query: 147 TVNFVLAELSDRAFAGRGVQDFF 169
           T+N +LAELSD+ FAG+GVQDFF
Sbjct: 136 TLNAILAELSDKVFAGKGVQDFF 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508532|gb|AFK42332.1| unknown [Medicago truncatula]

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 68/83 (81%)

Query: 87  SELGSEIKKVLKEKKEEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLL 146
           SEL SE+KK ++E++E++  +  +GV  EI EIEWP FGKVLGTTGVVL VI GSS VLL
Sbjct: 76  SELASELKKAMQEREEQEGNNFWNGVVSEIGEIEWPEFGKVLGTTGVVLSVIFGSSAVLL 135

Query: 147 TVNFVLAELSDRAFAGRGVQDFF 169
           T+N +LAELSD+ FAG+GVQDFF
Sbjct: 136 TLNAILAELSDKVFAGKGVQDFF 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2130409	177	SECE1 [Arabidopsis thaliana (t	0.729	0.700	0.392	5.3e-17

TAIR|locus:2130409 SECE1 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 51/130 (39%), Positives = 64/130 (49%)

Query:    46 KNRSVLVKAVERSQESA---EKSETVNEPESEPAN---PATXXXXXXXXXXXXXXXXXXX 99
             K+   + KA+E+ +++A    +SE    P  E  +                         
Sbjct:    47 KSACFVAKAIEQRRDTAGSESESEATPSPAEESGSGEDKEVEISAIGAEIKAAMEQRKTA 106

Query:   100 XXXXXAGDLLSGVGEEIREIEWPAFXXXXXXXXXXXXXIAGSSVVLLTVNFVLAELSDRA 159
                    + LSGV EE++EIEWPAF             IAGSSVVLLTVNF+LAELSDR 
Sbjct:   107 EEEKGKNEFLSGVAEEVKEIEWPAFQKVLGTTGVVLGVIAGSSVVLLTVNFLLAELSDRV 166

Query:   160 FAGRGVQDFF 169
             F GRGVQDFF
Sbjct:   167 FIGRGVQDFF 176


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.130   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       120   0.00091  102 3  11 23  0.41    31
                                                     29  0.48    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  541 (58 KB)
  Total size of DFA:  105 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.57u 0.15s 10.72t   Elapsed:  00:00:01
  Total cpu time:  10.57u 0.15s 10.72t   Elapsed:  00:00:01
  Start:  Fri May 10 00:03:11 2013   End:  Fri May 10 00:03:12 2013

GO:0006605 "protein targeting" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009306 "protein secretion" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23342	SECE1_ARATH	No assigned EC number	0.4780	0.9588	0.9209	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
COG0690	73	COG0690, SecE, Preprotein translocase subunit SecE	1e-04
TIGR00964	55	TIGR00964, secE_bact, preprotein translocase, SecE	0.003

>gnl|CDD|223762 COG0690, SecE, Preprotein translocase subunit SecE [Intracellular trafficking and secretion]

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 34/59 (57%)

Query: 97  LKEKKEEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAEL 155
              KK +K  +    V +E++++ WP   +++ +T +VL V+A  S+ L  ++ ++ +L
Sbjct: 12  PMTKKGKKFFNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFLYGLDQLIGKL 70

Length = 73

>gnl|CDD|213575 TIGR00964, secE_bact, preprotein translocase, SecE subunit, bacterial

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 11/44 (25%), Positives = 24/44 (54%)

Query: 109 LSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVL 152
              V  E++++ WP+  +++  T VV+  +   S+ L  V++V 
Sbjct: 5   FKEVKAELKKVVWPSRKELITYTIVVIVFVIFFSLFLFLVDYVF 48

This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC [Protein fate, Protein and peptide secretion and trafficking]. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
PF00584	57	SecE: SecE/Sec61-gamma subunits of protein translo	98.88
PRK07597	64	secE preprotein translocase subunit SecE; Reviewed	98.65
COG0690	73	SecE Preprotein translocase subunit SecE [Intracel	98.57
TIGR00964	55	secE_bact preprotein translocase, SecE subunit, ba	98.54
PRK05740	92	secE preprotein translocase subunit SecE; Reviewed	98.41

>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway

Probab=98.88  E-value=1.1e-10  Score=77.04  Aligned_cols=55  Identities=18%  Similarity=0.394  Sum_probs=52.0

Q ss_pred             cCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhHHHh
Q 030842          106 GDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAF  160 (170)
Q Consensus       106 ~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd~vF  160 (170)
                      .+|++++.+|+++|+||+++.++.+|++|+.+++..++++..+|.++..+.+.+|
T Consensus         3 ~~f~~~~~~Elkkv~WP~~~e~~~~t~~Vl~~~~i~~~~~~~vD~~~~~~~~~i~   57 (57)
T PF00584_consen    3 KNFFREVKKELKKVTWPSRKELLKSTIIVLVFVIIFGLFFFLVDLIFSWLLNLIL   57 (57)
T ss_dssp             HHHHHCHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            3689999999999999999999999999999999999999999999999988765

Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.

>PRK07597 secE preprotein translocase subunit SecE; Reviewed

Probab=98.65  E-value=2.2e-09  Score=73.02  Aligned_cols=54  Identities=22%  Similarity=0.420  Sum_probs=50.1

Q ss_pred             hhcCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhH
Q 030842          104 KAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSD  157 (170)
Q Consensus       104 e~~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd  157 (170)
                      .-.+|++++.+|+++|.||+++.++.+|++|+.+++..++++..+|.++..+-+
T Consensus         9 ~~~~f~~~~~~ElkkV~WPs~~e~~~~t~~Vi~~~~~~~~~i~~vD~~~~~~~~   62 (64)
T PRK07597          9 KLKKFFKDVKAELKKVTWPTRKELVRSTIVVLVFVAFFALFFYLVDLLFSKLIS   62 (64)
T ss_pred             HHHHHHHHHHHHHhhCcCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346899999999999999999999999999999999999999999999887654

>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]

Probab=98.57  E-value=8.7e-09  Score=72.97  Aligned_cols=58  Identities=26%  Similarity=0.411  Sum_probs=52.0

Q ss_pred             HhhhhhhcCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhh
Q 030842           99 EKKEEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELS  156 (170)
Q Consensus        99 erk~~e~~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELS  156 (170)
                      ..+-+.--+|+.++.+|+++|+||++..++.+|.+||.++++-++++..+|.++..+-
T Consensus        14 ~~~~k~~~~f~~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s~~~~~~D~l~~~~i   71 (73)
T COG0690          14 TKKGKKFFNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFLYGLDQLIGKLV   71 (73)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334455899999999999999999999999999999999999999999999987663

>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial

Probab=98.54  E-value=8.1e-09  Score=68.91  Aligned_cols=51  Identities=24%  Similarity=0.440  Sum_probs=48.1

Q ss_pred             CccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhH
Q 030842          107 DLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSD  157 (170)
Q Consensus       107 nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd  157 (170)
                      +|++++..|+++|.||+++.+...|++|+..++..++++..+|.++..+-+
T Consensus         3 ~f~~~~~~ElkkV~WPt~~e~~~~t~~Vi~~~~~~~~~~~~~D~~~~~~~~   53 (55)
T TIGR00964         3 KFFKEVKAELKKVVWPSRKELITYTIVVIVFVIFFSLFLFGVDYVFGKLIS   53 (55)
T ss_pred             hHHHHHHHHHhcCcCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999999999999999987654

This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.

>PRK05740 secE preprotein translocase subunit SecE; Reviewed

Probab=98.41  E-value=6.2e-08  Score=71.05  Aligned_cols=59  Identities=20%  Similarity=0.265  Sum_probs=54.1

Q ss_pred             hhhhcCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhHHHh
Q 030842          102 EEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAF  160 (170)
Q Consensus       102 ~~e~~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd~vF  160 (170)
                      -++-.+|+.++..|+++|.||+++.++.+|++|+.+++-.++++..+|.++..+-+.++
T Consensus        33 ~~~~~~F~k~v~~ElkKV~WPtr~e~~~~t~~Viv~~~i~~l~i~~~D~~~~~li~~i~   91 (92)
T PRK05740         33 GKAFFAFAKESRTEVRKVVWPTRQETLQTTLIVIAVVIVMALILWGLDSILVWLISFIT   91 (92)
T ss_pred             cHHHHHHHHHHHHHhhhccCcCHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34556899999999999999999999999999999999999999999999998887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
3dl8_C	65	SECE; RECA-type ATPase membrane protein translocat	9e-05
3din_D	65	Preprotein translocase subunit SECE; protein trans	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 5e-09
 Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 58/196 (29%)

Query: 13  PVLPKAYVQSKPPPVSHYISLRR--LRLTSATAL--------GKNRSVLVKAVERSQESA 62
            V  K  V    P    Y+ LR+  L L  A  +        GK  + +   V  S +  
Sbjct: 124 QVFAKYNVSRLQP----YLKLRQALLELRPAKNVLIDGVLGSGK--TWVALDVCLSYKVQ 177

Query: 63  EKSE---------TVNEPES-----------------EPANPATESSAELSELGSEIKKV 96
            K +           N PE+                   ++ ++     +  + +E++++
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 97  LKEKKEEKAGDLLSGVGEEIREIE-WPAFG---KVLGTT---GVVLGVIAGS----SVVL 145
           LK K  E    LL  V   ++  + W AF    K+L TT    V   + A +    S+  
Sbjct: 238 LKSKPYENC--LL--VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 146 LTVNFVLAELSDRAFA 161
            ++     E       
Sbjct: 294 HSMTLTPDE-VKSLLL 308

>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Length = 65

 Score = 37.8 bits (88), Expect = 9e-05
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 103 EKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAG 162
           EK  + L GV +E++ + WP+   V+  T  V+       V L  ++    ++     + 
Sbjct: 2   EKLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSL 61

Query: 163 RG 164
           RG
Sbjct: 62  RG 63

>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Length = 65

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 103 EKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAG 162
           EK       V  E ++I WP+  ++L + GVVL ++A +SV    ++F+ + +    F  
Sbjct: 2   EKLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKA 61

Query: 163 RG 164
            G
Sbjct: 62  LG 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
3dl8_C	65	SECE; RECA-type ATPase membrane protein translocat	98.8
3din_D	65	Preprotein translocase subunit SECE; protein trans	98.78
2zjs_E	60	Preprotein translocase SECE subunit; translocon, S	98.58
3j01_B	116	Preprotein translocase SECE subunit; ribonucleopro	98.48
3bo0_B	65	Preprotein translocase SECE subunit; ribosome-SECY	97.36

>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}

Probab=98.80  E-value=3.4e-10  Score=77.18  Aligned_cols=58  Identities=19%  Similarity=0.325  Sum_probs=32.2

Q ss_pred             hcCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhHHHhcC
Q 030842          105 AGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAG  162 (170)
Q Consensus       105 ~~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd~vF~g  162 (170)
                      -.+|++++..|+++|.||+++.+..+|++|+..++..++++..+|.++..+-+.+|+=
T Consensus         4 ~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~v~i~~~~i~~vD~~~~~~~~~i~~~   61 (65)
T 3dl8_C            4 LKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSL   61 (65)
T ss_dssp             ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999999999999999999999999999999999999998853

>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}

Probab=98.78  E-value=2.3e-10  Score=78.00  Aligned_cols=58  Identities=26%  Similarity=0.503  Sum_probs=50.2

Q ss_pred             hcCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhHHHhcC
Q 030842          105 AGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFAG  162 (170)
Q Consensus       105 ~~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd~vF~g  162 (170)
                      -.+|++++..|+++|.||+++.+..+|++|+..++..++++..+|.++..+-+.+|+=
T Consensus         4 ~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~~~i~~~~i~~vD~~~~~~~~~i~~~   61 (65)
T 3din_D            4 LRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKA   61 (65)
T ss_dssp             ------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3579999999999999999999999999999999999999999999999999998853

>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E

Probab=98.58  E-value=6.3e-10  Score=74.53  Aligned_cols=52  Identities=19%  Similarity=0.219  Sum_probs=42.9

Q ss_pred             cCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhH
Q 030842          106 GDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSD  157 (170)
Q Consensus       106 ~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd  157 (170)
                      .+|++++.+|+++|.||+++.+..+|++|+..++..++++..+|.++..+-+
T Consensus         6 ~~f~~~v~~ElkKV~WPtr~e~~~~t~vViv~v~i~~~~~~~vD~~~~~~~~   57 (60)
T 2zjs_E            6 IRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIG   57 (60)
T ss_dssp             ------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999998776543

>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z

Probab=98.48  E-value=2.5e-08  Score=75.12  Aligned_cols=68  Identities=24%  Similarity=0.264  Sum_probs=60.8

Q ss_pred             HHHHHHhhhhhhcCccchHHhhhhhcccCCCcccccccceeEeEEeechhhHHHHHHHHHHhhHHHhc
Q 030842           94 KKVLKEKKEEKAGDLLSGVGEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNFVLAELSDRAFA  161 (170)
Q Consensus        94 k~~~~erk~~e~~nf~~GVaEEi~~IEWPt~~kvLgTTGVVL~II~GSs~vLLtVNa~LAELSd~vF~  161 (170)
                      -=++.-.+-++-.+|++++.+|++++.||+++.+..+|++|+..++-.++++..+|.++..+-+.+++
T Consensus        46 ~v~~~t~~g~~~~~F~kev~~ElkKV~WPtr~E~~~~T~vViv~vii~al~l~~vD~~~~~~v~~i~g  113 (116)
T 3j01_B           46 GVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITG  113 (116)
T ss_dssp             HHHHHHTTTSCTTTCSSSHHHHHHHHHTTTTTSCHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHTSS
T ss_pred             HHHHHccccchHHHHHHHHHHHhheeeCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33445555567789999999999999999999999999999999999999999999999999998884

>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B

Probab=97.36  E-value=5.4e-06  Score=55.31  Aligned_cols=49  Identities=12%  Similarity=0.230  Sum_probs=42.2

Q ss_pred             cCccchHHhhhhhcccCCC----cccc---cccceeEeEEeechhhHHHHHHHHHH
Q 030842          106 GDLLSGVGEEIREIEWPAF----GKVL---GTTGVVLGVIAGSSVVLLTVNFVLAE  154 (170)
Q Consensus       106 ~nf~~GVaEEi~~IEWPt~----~kvL---gTTGVVL~II~GSs~vLLtVNa~LAE  154 (170)
                      .+|++++.+|++++.||++    ....   .+|++|+.++...+.++..++.++..
T Consensus         7 ~~f~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~lid~~i~~   62 (65)
T 3bo0_B            7 VAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKG   62 (65)
T ss_dssp             HHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             HHHHHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999    8888   99999999888888888777766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00