Citrus Sinensis ID: 030938

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MMTPQKFVTTHLTQKSSLRAMASTIPWSSLSRAPTLLRVRNNARPVTCKAHAPKSAQALHASRRNLLFFSLTALPVLTARESASSAEDIPLFGLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGGLAQAGAVAGAELVGLLVATSVVNGILGPEPQ
Secondary Structure (PSIPRED)
cccccHHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccHcHHHHcccccccHHHccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHEEHEHHHHHHHccccccc
Coil and Loop (DISEMBL)
MMTPQKFVTTHLTQKSSLRAMAstipwsslsraptllrvrnnarpvtckahapkSAQALHASRRNLLFFsltalpvltaresassaediplFGLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGGLAQAGAVAGAELVGLLVATSVvngilgpepq
Flexible Loop (DISEMBL)
mmtpqkfvtthltqksslrAMAStipwsslsraptlLRVRNNARPVTCKAHAPKSAQALHASRRNLLFFSLTALPVLTAresassaediplFGLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGGLAQAGAVAGAELVGLLVATSVvngilgpepq
Low Complexity Region (SEG)
MMTPQKFVTTHLTQKSSLRAMASTIPWSSLSRAPTLLRVRNNARPVTCKAHAPKSAQALHASRRNLLFFSLTALPVLTARESASSAEDIPLFGLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTagfgglaqagavagaelvgllvaTSVVNGILGPEPQ
Disordered region (IsUnstruct)
**********************************TLLRVR*****VTC**********LHASRRNLLFFSLTALPVLTA*********IPLFGLR**********VDIVRE********************TTAGFGGLAQAGAVAGAELVGLLVATSVVNGIL*****
Disordered Region (DISOPRED)
*****KF*TTHLTQKS*************************************************LLFFSLTALPVLT********EDIPLFGLRRKL*******************************VETTAGFGGLAQAGAVAGAELVGLLVATSVVNGILGP***
Disordered Region (DISEMBL)
***************SSLRAMASTIPWSSLSRAPTLLRVRNNARPVT************HASRRNLLFFSLTALPVLTARESASSAEDIPLFGLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGGLAQAGAVAGAELVGLLVATSVVNGILGPEPQ
Disordered Region (DISPRO)
*****KFVT**LTQK***********WSS*SRAPTLLR**N**RPVTCKAH***S***LHASRRNLLFFSLTALPVLTARESASSAEDIPLFGLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGGLAQAGAVAGAELVGLLVATSVVNGILGPE**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMTPQKFVTTHLTQKSSLRAMASTIPWSSLSRAPTLLRVRNNARPVTCKAHAPKSAQALHASRRNLLFFSLTALPVLTARESASSAEDIPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVETTAGFGGLAQAGAVAGAELVGLLVATSVVNGILGPEPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
21554083	167	unknown [Arabidopsis thaliana]	0.704	0.712	0.577	1e-28
224094564	167	predicted protein [Populus trichocarpa]	0.834	0.844	0.520	4e-28
297825275	167	hypothetical protein ARALYDRAFT_481233 [	0.692	0.700	0.565	6e-28
18400342	167	synechocystis YCF37-like protein [Arabid	0.639	0.646	0.6	1e-27
356496840	169	PREDICTED: uncharacterized protein LOC10	0.846	0.846	0.542	2e-27
357483133	161	hypothetical protein MTR_5g018590 [Medic	0.822	0.863	0.503	2e-27
356537796	162	PREDICTED: uncharacterized protein LOC10	0.834	0.870	0.521	3e-25
255562751	157	conserved hypothetical protein [Ricinus	0.763	0.821	0.578	3e-23
225467027	152	PREDICTED: uncharacterized protein LOC10	0.715	0.796	0.532	3e-23
449460624	167	PREDICTED: uncharacterized protein LOC10	0.727	0.736	0.544	4e-22

>gi|21554083|gb|AAM63164.1| unknown [Arabidopsis thaliana]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 92/135 (68%), Gaps = 16/135 (11%)

Query: 50  AHAPKSAQA----LHASRRNLLFFSLTALPVLTARESASSAEDIPLFGLRRKLKQAEEEA 105
           AH+ K A A      ASRRNLLF SLTA  V+T  +SAS AE+IPLFG+R+KLK+AEEEA
Sbjct: 32  AHSNKPALASFSLTGASRRNLLF-SLTAATVVTGLQSASMAENIPLFGIRKKLKKAEEEA 90

Query: 106 VDIVRE-----------VEKKIETVEERIEASEKEVETTAGFGGLAQAGAVAGAELVGLL 154
           V+IV+E            EK +E  E  +E +EKE+ T   F GL QAGAV  AE VG+L
Sbjct: 91  VEIVKEGFETAEKGVDAAEKGLEAAERGVETAEKEIVTAVSFNGLTQAGAVVAAEFVGVL 150

Query: 155 VATSVVNGILGPEPQ 169
           VATSVVNGILGPE Q
Sbjct: 151 VATSVVNGILGPEAQ 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094564|ref|XP_002310181.1| predicted protein [Populus trichocarpa] gi|222853084|gb|EEE90631.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 28/169 (16%)

Query: 21  MAST---IPWSSLSRAPTLLRVRNNARPVTCKAH-APKSAQALHASRRNLLFFSLTALPV 76
           MAST   +P  +LS    L R+RN A P  C+AH +PK A      RR+LLF  L + P 
Sbjct: 1   MASTFSPLPLRTLS----LHRMRN-AHPTICEAHTSPKPAPISFPGRRHLLFM-LASAPA 54

Query: 77  LTARESASSAEDIPLFGLRRKLKQAEEEAVDIVRE------------------VEKKIET 118
           L  RE +S A+DIPLFGLR+KLK+AEEEA ++V+E                  VE+ IET
Sbjct: 55  LALREPSSLAQDIPLFGLRKKLKRAEEEAEELVKEGFETAEKGLETAGKGIVTVERGIET 114

Query: 119 VEERIEASEKEVETTAGFGGLAQAGAVAGAELVGLLVATSVVNGILGPE 167
            E+ I  +EKE+E    FGGLAQAGAVAGAE+VG+LVAT++VNGILGPE
Sbjct: 115 AEKEIVTAEKEIEEAVSFGGLAQAGAVAGAEVVGVLVATAIVNGILGPE 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825275|ref|XP_002880520.1| hypothetical protein ARALYDRAFT_481233 [Arabidopsis lyrata subsp. lyrata] gi|297326359|gb|EFH56779.1| hypothetical protein ARALYDRAFT_481233 [Arabidopsis lyrata subsp. lyrata]

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/129 (56%), Positives = 88/129 (68%), Gaps = 12/129 (9%)

Query: 52  APKSAQALHASRRNLLFFSLTALPVLTARESASSAEDIPLFGLRRKLKQAEEEAVDIVRE 111
           AP S     ASRRNLLF SLTA  V+T  +SAS AE+IP FG+R+KL +AEEEAV+IV+E
Sbjct: 38  APPSFSLTGASRRNLLF-SLTAATVMTGLQSASMAENIPFFGIRKKLNKAEEEAVEIVKE 96

Query: 112 -----------VEKKIETVEERIEASEKEVETTAGFGGLAQAGAVAGAELVGLLVATSVV 160
                       E+ +E  E  +E++EKE+ T   F GL QAGAV  AE VG+LVATSVV
Sbjct: 97  GFETAEKGVDAAERGLEAAERGVESAEKEIVTAVSFNGLTQAGAVVAAEFVGVLVATSVV 156

Query: 161 NGILGPEPQ 169
           NGILGPE Q
Sbjct: 157 NGILGPEAQ 165

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400342|ref|NP_565556.1| synechocystis YCF37-like protein [Arabidopsis thaliana] gi|3152615|gb|AAC17094.1| expressed protein [Arabidopsis thaliana] gi|16648702|gb|AAL25543.1| At2g23670/F26B6.32 [Arabidopsis thaliana] gi|20197003|gb|AAM14867.1| expressed protein [Arabidopsis thaliana] gi|20334912|gb|AAM16212.1| At2g23670/F26B6.32 [Arabidopsis thaliana] gi|206748360|gb|ACI22363.1| YCF37-like protein [Arabidopsis thaliana] gi|330252384|gb|AEC07478.1| synechocystis YCF37-like protein [Arabidopsis thaliana]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/120 (60%), Positives = 85/120 (70%), Gaps = 12/120 (10%)

Query: 61  ASRRNLLFFSLTALPVLTARESASSAEDIPLFGLRRKLKQAEEEAVDIVRE--------- 111
           ASRRNLLF SLTA  V+T  + AS AE+IPLFG+R+KLK+AEEEAV+IV+E         
Sbjct: 47  ASRRNLLF-SLTAATVVTGLQPASMAENIPLFGIRKKLKKAEEEAVEIVKEGFETAEKGV 105

Query: 112 --VEKKIETVEERIEASEKEVETTAGFGGLAQAGAVAGAELVGLLVATSVVNGILGPEPQ 169
              EK +E  E  +E +EKE+ T   F GL QAGAV  AE VG+LVATSVVNGILGPE Q
Sbjct: 106 DAAEKGLEAAERGVETAEKEIVTAVSFNGLTQAGAVVAAEFVGVLVATSVVNGILGPEAQ 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496840|ref|XP_003517273.1| PREDICTED: uncharacterized protein LOC100780194 [Glycine max]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/166 (54%), Positives = 109/166 (65%), Gaps = 23/166 (13%)

Query: 23  STIPWSSLSRAPTLLRVRNNARPVTCKAHAPKSAQAL-HASRRNLLFFSLTALPVLTARE 81
           S+ P+S+LS    ++R   NA P  CK  A K   AL  A RR LLFF LTA   LTARE
Sbjct: 6   SSSPFSTLSFRRLVVR---NATPSPCKPRAVKPLTALPSAGRRQLLFF-LTATTALTARE 61

Query: 82  SASSAEDIPLFGLRRKLKQAEEEAVDIVRE-----------VEKKIETVEERIEASEK-- 128
           +AS A+DIPLFG+R+ LK+ EEEA +IVRE            EK +ET E+ + A+EK  
Sbjct: 62  AASVAQDIPLFGIRKSLKKVEEEAEEIVREGFEAADKGLVAAEKGLETAEKGLVAAEKGI 121

Query: 129 -----EVETTAGFGGLAQAGAVAGAELVGLLVATSVVNGILGPEPQ 169
                E+E T  FGGLAQAGAVAGAE+ G+LVAT+VVNGILGPE Q
Sbjct: 122 EEAEREIEETVSFGGLAQAGAVAGAEVFGILVATAVVNGILGPEAQ 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483133|ref|XP_003611853.1| hypothetical protein MTR_5g018590 [Medicago truncatula] gi|355513188|gb|AES94811.1| hypothetical protein MTR_5g018590 [Medicago truncatula]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 97/153 (63%), Gaps = 14/153 (9%)

Query: 29  SLSRAPTLLRVR---NNARPVTCKAHAPKSAQALHASRRNLLFFSLTALPVLTARESASS 85
           ++S  PTL   R   +NA   +CKA A  S  A  +S R  + F LTA   LTARES S 
Sbjct: 5   AISSFPTLSFQRVIVSNATTFSCKAKATNSVTASPSSGRREMLFLLTASTALTARESVSM 64

Query: 86  AEDIPLFGLRRKLKQAEEEAVDIVRE-----------VEKKIETVEERIEASEKEVETTA 134
           A+DIPLFG+R+ LK+AEE+A +IV+E            EK +E  E  +E +EKE+ET  
Sbjct: 65  AQDIPLFGIRKSLKKAEEKAEEIVKEGFESAEKGLETAEKGLEKAELGLEEAEKEIETGV 124

Query: 135 GFGGLAQAGAVAGAELVGLLVATSVVNGILGPE 167
           G G LAQA  V GAE+ GLLVA++VVNGILGPE
Sbjct: 125 GLGNLAQAIVVGGAEVFGLLVASAVVNGILGPE 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537796|ref|XP_003537411.1| PREDICTED: uncharacterized protein LOC100788441 [Glycine max]

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 103/161 (63%), Gaps = 20/161 (12%)

Query: 23  STIPWSSLSRAPTLLR--VRNNARPVTCKAHAPKSAQAL-HASRRNLLFFSLTALPVLTA 79
           S+ P+S+LS      R  V +NA    CK  A K   AL  A RR LLFF LTA    TA
Sbjct: 6   SSSPFSTLS-----FRRLVVSNATVSPCKPRAVKLLTALPSAGRRQLLFF-LTATTAFTA 59

Query: 80  RESASSAEDIPLFGLRRKLKQAEE----------EAVDI-VREVEKKIETVEERIEASEK 128
           RE+AS A+DIPLFG+R+ LK+ EE          EA D  +   EK +ET E+ + A+E+
Sbjct: 60  REAASVAQDIPLFGIRKSLKKVEEEAEEIVKEGFEAADKGLVAAEKGLETAEKGLVAAER 119

Query: 129 EVETTAGFGGLAQAGAVAGAELVGLLVATSVVNGILGPEPQ 169
           E+E    FGGLAQAGAVAGAE+ G+LVAT+VVNGILGPE Q
Sbjct: 120 EIEEAVSFGGLAQAGAVAGAEVFGILVATAVVNGILGPEAQ 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562751|ref|XP_002522381.1| conserved hypothetical protein [Ricinus communis] gi|223538459|gb|EEF40065.1| conserved hypothetical protein [Ricinus communis]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/147 (57%), Positives = 99/147 (67%), Gaps = 18/147 (12%)

Query: 37  LRVRNNARPV---TCKAHAPKSAQALHASRRNLLFFSLTALPVLTARESASSAEDIPLFG 93
           L + N AR     +C A  P+SA      RR LLF  LTA P LT RE+AS AEDIPLFG
Sbjct: 13  LSLNNRARRAHAPSCNAEIPQSA---FTGRRQLLFI-LTAAPALTVRETASKAEDIPLFG 68

Query: 94  LRRKLKQAEEEAVDIVRE----VEKKIETVEERIEASEK-------EVETTAGFGGLAQA 142
           LR+KLK+AEEEA ++VRE     EK +ET E+ IE +EK       E+E    FG LAQA
Sbjct: 69  LRKKLKKAEEEAEELVREGFETAEKGLETAEKGIETAEKGIEAAEKEIEEAVSFGALAQA 128

Query: 143 GAVAGAELVGLLVATSVVNGILGPEPQ 169
           GAVAGAE+ G+LVATSVVNGILGPE Q
Sbjct: 129 GAVAGAEIFGVLVATSVVNGILGPEAQ 155

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225467027|ref|XP_002265860.1| PREDICTED: uncharacterized protein LOC100262366 [Vitis vinifera] gi|225468769|ref|XP_002275177.1| PREDICTED: uncharacterized protein LOC100262616 [Vitis vinifera] gi|147791855|emb|CAN61831.1| hypothetical protein VITISV_027633 [Vitis vinifera]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/139 (53%), Positives = 86/139 (61%), Gaps = 18/139 (12%)

Query: 42  NARPVTCKAHAPKSAQALHASRRNLLFFSLTALPVLTARESASSAEDIPLFGLRRK---- 97
           NA P++CKAH   S   L  SRR  L    TAL   TARE  S A+DIPLFGLR+K    
Sbjct: 19  NAHPMSCKAHV--STPVL--SRRRCLVLLTTAL---TARELPSRAQDIPLFGLRKKLEKV 71

Query: 98  -------LKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGGLAQAGAVAGAEL 150
                  LK+  E A   +   EK IE  E+ IE +EKE+ET   + GL QAGAVAGAE+
Sbjct: 72  EEEAEEILKEGIEAAEKGIVTAEKGIEKAEKGIETAEKEIETAVSYNGLTQAGAVAGAEV 131

Query: 151 VGLLVATSVVNGILGPEPQ 169
           VG+LVATSVVN ILGPE Q
Sbjct: 132 VGVLVATSVVNAILGPEAQ 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460624|ref|XP_004148045.1| PREDICTED: uncharacterized protein LOC101208092 [Cucumis sativus]

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/145 (54%), Positives = 98/145 (67%), Gaps = 22/145 (15%)

Query: 47  TCKAHAPKS-AQALHASR---RNLLFFSLTALPVLTARESASSAEDIPLFGLRRKLKQAE 102
           T +A A KS +++L ASR   + LLF + TA   +  RE+ S AEDIPLFGLR+KLK+ E
Sbjct: 22  TVRAAAVKSPSESLSASRTRRQTLLFLTATATAAVVGRENPSMAEDIPLFGLRKKLKKVE 81

Query: 103 EEAVDIVRE----VEKKIETVE-------------ER-IEASEKEVETTAGFGGLAQAGA 144
           EEA +IVRE     EK +ET E             ER IE +EKE+ET   FG L+QAGA
Sbjct: 82  EEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREIETAEKEIETAVNFGALSQAGA 141

Query: 145 VAGAELVGLLVATSVVNGILGPEPQ 169
           VAGAE+VG+L+ATS+VNGILGPE Q
Sbjct: 142 VAGAEVVGVLIATSIVNGILGPEGQ 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
TAIR|locus:2046832	167	YCF37 "AT2G23670" [Arabidopsis	0.875	0.886	0.427	1.3e-20

TAIR|locus:2046832 YCF37 "AT2G23670" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 71/166 (42%), Positives = 87/166 (52%)

Query:    21 MASTIPWSSLSRAPTLLRVR--NNARPVTCKAHAPKSAQALH----ASRRNLLFFSLTAL 74
             MAST+  S LS     L+ R    A      AH+ K A +      ASRRNLLF SLTA 
Sbjct:     1 MASTVSLSLLSGGSGALQARCARTAHVSPRAAHSNKPALSSFSLTGASRRNLLF-SLTAA 59

Query:    75 PVLTARESASSAEDIPLFGLRRKLKQAEEEAVDIVRE-----------VEKKIETVEERI 123
              V+T  + AS AE+IPLFG+R+KLK+AEEEAV+IV+E            EK +E  E  +
Sbjct:    60 TVVTGLQPASMAENIPLFGIRKKLKKAEEEAVEIVKEGFETAEKGVDAAEKGLEAAERGV 119

Query:   124 EASEKEVETTXXXXXXXXXXXXXXXXXXXXXXXTSVVNGILGPEPQ 169
             E +EKE+ T                        TSVVNGILGPE Q
Sbjct:   120 ETAEKEIVTAVSFNGLTQAGAVVAAEFVGVLVATSVVNGILGPEAQ 165


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.124   0.335    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      169       146   0.00079  103 3  10 23  0.48    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  580 (62 KB)
  Total size of DFA:  153 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.47u 0.21s 28.68t   Elapsed:  00:00:01
  Total cpu time:  28.47u 0.21s 28.68t   Elapsed:  00:00:01
  Start:  Fri May 10 04:51:48 2013   End:  Fri May 10 04:51:49 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00071002	hypothetical protein (168 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.VI.698.1	hypothetical protein (139 aa)				•			•		0.447

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	93.39
TIGR01147	113	V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi	88.25
PRK10132	108	hypothetical protein; Provisional	84.72
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	83.62
KOG1772	108	consensus Vacuolar H+-ATPase V1 sector, subunit G	82.29
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	82.09

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=93.39  E-value=0.26  Score=35.54  Aligned_cols=37  Identities=35%  Similarity=0.535  Sum_probs=26.7

Q ss_pred             hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 030938           96 RKLKQAEEEAVDIVREVE-KKIETVEERIEASEKEVET  132 (169)
Q Consensus        96 KklkkAEEeA~EiVkE~E-~~veaae~g~e~Aekei~~  132 (169)
                      +.|.+||++|.+||.++. ........+-++|+++|+.
T Consensus         7 q~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~   44 (105)
T PF03179_consen    7 QQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEE   44 (105)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999977 3344455566666666554

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G

Probab=88.25  E-value=1.7  Score=33.62  Aligned_cols=39  Identities=36%  Similarity=0.544  Sum_probs=31.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 030938           93 GLRRKLKQAEEEAVDIVREVE-KKIETVEERIEASEKEVET  132 (169)
Q Consensus        93 GIRKklkkAEEeA~EiVkE~E-~~veaae~g~e~Aekei~~  132 (169)
                      ||. .|=.||.+|.+||.++. ....--..+.++|++||+.
T Consensus         7 GIQ-~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~   46 (113)
T TIGR01147         7 GIQ-QLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK   46 (113)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            564 45679999999999987 5566677788899999887

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.

>PRK10132 hypothetical protein; Provisional

Probab=84.72  E-value=6.4  Score=30.01  Aligned_cols=57  Identities=16%  Similarity=0.211  Sum_probs=28.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhHHHHHHHH
Q 030938           94 LRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGGLAQAGAVAGAELVGLLVAT  157 (169)
Q Consensus        94 IRKklkkAEEeA~EiVkE~E~~veaae~g~e~Aekei~~~~~~gglvQAGaVAGAEv~GVLVAs  157 (169)
                      +|.|++..-+.+++-..+.+...+.+..+..    ..++.+-..|+.=.|+.+|   +|+++|.
T Consensus        46 lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~----~~~~~V~~~Pw~svgiaag---vG~llG~  102 (108)
T PRK10132         46 ARRKAQALLKETRARMHGRTRVQQAARDAVG----CADTFVRERPWCSVGTAAA---VGIFIGA  102 (108)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHhCcHHHHHHHHH---HHHHHHH
Confidence            4444444444444444443332222222222    3346666777776676666   5666654

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=83.62  E-value=0.78  Score=40.22  Aligned_cols=56  Identities=21%  Similarity=0.251  Sum_probs=35.3

Q ss_pred             cccCCCccccccCCCCcccccccchhhHHHHHhhhhhhhhhcccccccCC--CCchhhhhH
Q 030938           39 VRNNARPVTCKAHAPKSAQALHASRRNLLFFSLTALPVLTARESASSAED--IPLFGLRRK   97 (169)
Q Consensus        39 ~~snA~~~~Cka~~~~~~~~~~~~RR~~l~llLtA~s~lt~r~~~a~A~d--IpLFGIRKk   97 (169)
                      ..+..+++.|++.....   ...+||..|.++++++.+.+-..++..|.+  --+||.-|+
T Consensus        31 ~~~~~~~~~~~~~~~~~---~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~   88 (260)
T PLN00042         31 SASRPSQVVCRAQEEDN---SAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKT   88 (260)
T ss_pred             CCCCCcceeeecccccc---ccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCC
Confidence            34455778898854432   237999998878777665555555544443  347777665

>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]

Probab=82.29  E-value=4.1  Score=32.07  Aligned_cols=39  Identities=36%  Similarity=0.477  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhc
Q 030938           97 KLKQAEEEAVDIVREVEK-KIETVEERIEASEKEVETTAG  135 (169)
Q Consensus        97 klkkAEEeA~EiVkE~E~-~veaae~g~e~Aekei~~~~~  135 (169)
                      .|=.||.+|.|+|-|+.+ +..--.-+.++|++||++--.
T Consensus        10 QLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~   49 (108)
T KOG1772|consen   10 QLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRS   49 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999883 555566688888888876544

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=82.09  E-value=13  Score=26.36  Aligned_cols=30  Identities=23%  Similarity=0.346  Sum_probs=16.5

Q ss_pred             HHHHHHHhhhcccchhhhhhhhhhhHHHHHHHH
Q 030938          125 ASEKEVETTAGFGGLAQAGAVAGAELVGLLVAT  157 (169)
Q Consensus       125 ~Aekei~~~~~~gglvQAGaVAGAEv~GVLVAs  157 (169)
                      .+....++.+-..|+.=-|+.+|   +|+|+|.
T Consensus        60 ~~~~~~~~~V~e~P~~svgiAag---vG~llG~   89 (94)
T PF05957_consen   60 EAAEQTEDYVRENPWQSVGIAAG---VGFLLGL   89 (94)
T ss_pred             HHHHHHHHHHHHChHHHHHHHHH---HHHHHHH
Confidence            44445556666666654455454   5666553

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
4efa_G	119	V-type proton ATPase subunit G; heterotrimer, peri	91.95
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	91.74

>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A

Probab=91.95  E-value=0.38  Score=36.07  Aligned_cols=39  Identities=26%  Similarity=0.413  Sum_probs=29.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 030938           93 GLRRKLKQAEEEAVDIVREVE-KKIETVEERIEASEKEVET  132 (169)
Q Consensus        93 GIRKklkkAEEeA~EiVkE~E-~~veaae~g~e~Aekei~~  132 (169)
                      ||..= =+||.+|.+||.|+- ........+.++|++||+.
T Consensus        11 GIQqL-L~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~   50 (119)
T 4efa_G           11 GIATL-LQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDS   50 (119)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66554 589999999999977 4455566677788777764

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=91.74  E-value=0.22  Score=34.08  Aligned_cols=40  Identities=28%  Similarity=0.419  Sum_probs=27.3

Q ss_pred             CCCchhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 030938           88 DIPLFGLRRKLKQAEEEAVDIVREVEKKIE-TVEERIEASE  127 (169)
Q Consensus        88 dIpLFGIRKklkkAEEeA~EiVkE~E~~ve-aae~g~e~Ae  127 (169)
                      |.|--=+=+++|+||++|+++|.|++++.+ ..+.+.+.|+
T Consensus        11 ~~~~~EvL~eIKeAE~~A~~iVeeA~~ea~~ii~eAreeAk   51 (56)
T 2k6i_A           11 GVSVMEAIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAK   51 (56)
T ss_dssp             CCCCTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444557889999999999999885433 3444555554

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00