Citrus Sinensis ID: 030940

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MAVASLQIGKPSLLSSVSISQSNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQEGDKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSMALNSEGLEGRLTIPLIKKHSRELILAFLHMHSSHLVKLLAI
Secondary Structure (PSIPRED)
cccccEEccccccccccccccccccccccccccEEEEEEEEEEccEEEEEccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mavaslqigkpsllssvsisqsnfpgkldsgkvflrsrCLIRRKFKvccgvqegdkqsngeeppesLFMKELKrrgmtptslledssrtdsglddktklkeedigfsrrntvsTEIDKSLADQRERSMALnseglegrltipliKKHSRELILAFLHMHSSHLVKLLAI
Flexible Loop (DISEMBL)
mavaslqigkpsllssvsisqsnfpgkldsgkvFLRSRCLIRRKFKVCCgvqegdkqsngeeppeSLFMKELKRRGmtptslledssrtdsglddktklkeedigfsrrntvsteidksladqrersmalnseglegrltIPLIKKHSRELILAFLHMHSSHLVKLLAI
Low Complexity Region (SEG)
MAVASLQIGKPsllssvsisqsNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQEGDKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSMALNSEGLEGRLTIPLIKKHSRELILAFLHMHSSHLVKLLAI
Disordered region (IsUnstruct)
****************************DSGKVFLRSRCLIRRKFKVCCGV*************************************************************************************GRLTIPLIKKHSRELILAFLHMHSSHLVKLL**
Disordered Region (DISOPRED)
*********************************FLRSRCLIRR****************************L***********************************************************SEGLEGRLTIPLIKKHSRELILAFLHMHSSHLVKLLAI
Disordered Region (DISEMBL)
MAVASLQIGKPSLLSSVSISQSNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQ***********PESLFMKELKRRG******************DKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSMALNSEGLEGRLTIPLIKKHSRELILAFLHMHSSHLVKLLAI
Disordered Region (DISPRO)
***********SLLSSVSISQSNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQ*********EPP*SLF*KELKRRG**P**************************************************LNSEGLEGRLTIPLIKKHSRELILAFLHMHSSHLVKLLAI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVASLQIGKPSLLSSVSISQSNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQEGDKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSMALNSEGLEGRLTIPLIKKHSRELILAFLHMHSSHLVKLLAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
225429185	216	PREDICTED: uncharacterized protein LOC10	0.792	0.620	0.626	3e-38
255562188	216	conserved hypothetical protein [Ricinus	0.792	0.620	0.591	2e-36
351727323	217	uncharacterized protein LOC100305745 [Gl	0.715	0.557	0.521	9e-31
388522639	214	unknown [Medicago truncatula]	0.733	0.579	0.575	2e-30
356536075	217	PREDICTED: uncharacterized protein LOC10	0.715	0.557	0.528	7e-30
224105771	226	predicted protein [Populus trichocarpa]	0.792	0.592	0.546	9e-30
224060907	152	predicted protein [Populus trichocarpa]	0.461	0.513	0.769	1e-27
449465109	217	PREDICTED: uncharacterized protein LOC10	0.775	0.603	0.523	6e-27
388519125	215	unknown [Lotus japonicus]	0.733	0.576	0.511	4e-25
312282351	212	unnamed protein product [Thellungiella h	0.775	0.617	0.517	6e-21

>gi|225429185|ref|XP_002275810.1| PREDICTED: uncharacterized protein LOC100266884 [Vitis vinifera] gi|297736400|emb|CBI25123.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/142 (62%), Positives = 102/142 (71%), Gaps = 8/142 (5%)

Query: 3   VASLQIGKPSLLSSVSISQSNFPGK-------LDSGKVFLRSRCLIRRKFKVCCGVQEGD 55
           +ASLQI K S    + ISQS    K        DS K    S    RR+ +VCCGVQEGD
Sbjct: 1   MASLQILKSSTFPPLPISQSKISRKSTCLFSEFDSRKRIRNSAFFTRRRLRVCCGVQEGD 60

Query: 56  KQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTE 115
            QSNGEEPPESLFMKELKRRGMTPTSLLEDS R   GL+++ KL EEDIGFS+RN  ST+
Sbjct: 61  NQSNGEEPPESLFMKELKRRGMTPTSLLEDSKRGAYGLEEEIKL-EEDIGFSKRNAYSTD 119

Query: 116 IDKSLADQRERSMALNSEGLEG 137
            + +L++QRERSMALNSEGLEG
Sbjct: 120 FEANLSNQRERSMALNSEGLEG 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562188|ref|XP_002522102.1| conserved hypothetical protein [Ricinus communis] gi|223538701|gb|EEF40302.1| conserved hypothetical protein [Ricinus communis]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 103/142 (72%), Gaps = 8/142 (5%)

Query: 3   VASLQIGKPSLLSSVSISQSNFPGKLDSGKVFLR------SRCLIRRKFKVCCGVQEGDK 56
           +A+L + K S LS +SI Q NFPG  +  +  L+       R + ++KF VCC VQEGD 
Sbjct: 1   MAALYVLK-STLSPISIQQKNFPGNSNPRRTILKLENFTSRRYIQKQKFSVCCSVQEGDN 59

Query: 57  QSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKL-KEEDIGFSRRNTVSTE 115
           Q+N EE PESLFMKELKRRGMTPTSLLEDS++   GL+D+ K+ +EED GF +R  VSTE
Sbjct: 60  QNNAEEAPESLFMKELKRRGMTPTSLLEDSNKGSYGLEDEFKIGQEEDRGFFKRKVVSTE 119

Query: 116 IDKSLADQRERSMALNSEGLEG 137
            DKSL +QRE SMALNSEGLEG
Sbjct: 120 FDKSLTNQRETSMALNSEGLEG 141

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727323|ref|NP_001236133.1| uncharacterized protein LOC100305745 [Glycine max] gi|255626505|gb|ACU13597.1| unknown [Glycine max]

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 72/138 (52%), Positives = 92/138 (66%), Gaps = 17/138 (12%)

Query: 14  LSSVSISQSNFPGKLDSGKVFLRSRCLIRRK--------------FKVCCGVQEGDKQSN 59
           LS +S+SQSNF  K           C + ++              F+VCC  QE + ++N
Sbjct: 8   LSQLSLSQSNFLRKSTWNNHL---PCYLHKRIAKLQTFTTSKSSTFRVCCSSQETNNKNN 64

Query: 60  GEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKS 119
           GEEPPESLFMKELKRRGMTPTSLL+D  ++D GLD++  + EED GF +R  VST +++S
Sbjct: 65  GEEPPESLFMKELKRRGMTPTSLLDDYKQSDYGLDEEVYVNEEDRGFPKRKAVSTNVERS 124

Query: 120 LADQRERSMALNSEGLEG 137
           L +QRERSMALNSEGLEG
Sbjct: 125 LDNQRERSMALNSEGLEG 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522639|gb|AFK49381.1| unknown [Medicago truncatula]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 93/132 (70%), Gaps = 8/132 (6%)

Query: 14  LSSVSISQSNFP--GKLD--SGKVFLRSRCLIRRKFK---VCCGV-QEGDKQSNGEEPPE 65
           LS +S+SQSNFP    L+  + + F   R L  +  K   VCC   Q+   Q+NGEEPPE
Sbjct: 8   LSQLSLSQSNFPRNSSLNHPTQQCFFHKRILKFQNSKSSRVCCSSSQDAKNQNNGEEPPE 67

Query: 66  SLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRE 125
           SLF+KELKRRGMTPTSLLED  +T+ G+D++  + EED GF  R TVST ID+ L +QRE
Sbjct: 68  SLFLKELKRRGMTPTSLLEDYKQTNCGVDEEAFVNEEDRGFLNRKTVSTNIDRGLENQRE 127

Query: 126 RSMALNSEGLEG 137
           RSMALNSEGLEG
Sbjct: 128 RSMALNSEGLEG 139

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536075|ref|XP_003536566.1| PREDICTED: uncharacterized protein LOC100797764 [Glycine max]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 73/138 (52%), Positives = 91/138 (65%), Gaps = 17/138 (12%)

Query: 14  LSSVSISQSNFPGKLDSGKVFLRSRCLIRRK--------------FKVCCGVQEGDKQSN 59
           LS +S+SQSNF  K           C I ++              F+V C   E +KQ+N
Sbjct: 8   LSQLSLSQSNFLRKSTWNNHL---PCYIHKRIAKLQTFTSSKSSTFRVRCSSPETNKQNN 64

Query: 60  GEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKS 119
           GEEPPESLFMKELKRRGMTPTSLL+D  ++D GLD++  + EED GF +R  VST +++S
Sbjct: 65  GEEPPESLFMKELKRRGMTPTSLLDDYKQSDYGLDEEVYVNEEDRGFPKRKAVSTNVERS 124

Query: 120 LADQRERSMALNSEGLEG 137
           L +QRERSMALNSEGLEG
Sbjct: 125 LDNQRERSMALNSEGLEG 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105771|ref|XP_002313927.1| predicted protein [Populus trichocarpa] gi|222850335|gb|EEE87882.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 18/152 (11%)

Query: 3   VASLQIGKPSLLSSVSISQS-NFPGKLDSGKVFLRSRCLI---------RRKFKVCCGVQ 52
           +ASL I K S LS++S S S +F GK +  K   + R            ++K KV C VQ
Sbjct: 1   MASLHILK-STLSTLSTSPSKDFIGKSNYRKTIPKLRTFYGSSRRYSGRQQKVKVFCSVQ 59

Query: 53  EGDK-QSNG------EEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIG 105
           E D  Q NG      EEP ESLFMKELKRRGMTPTSLLE+++R + G++D+ K+ EED G
Sbjct: 60  EEDNNQRNGKFSYQREEPTESLFMKELKRRGMTPTSLLEETNRGNYGVEDEMKIGEEDRG 119

Query: 106 FSRRNTVSTEIDKSLADQRERSMALNSEGLEG 137
           FS+RN VSTE+DKSL++QRE+SMALNSEG+EG
Sbjct: 120 FSKRNPVSTELDKSLSNQREKSMALNSEGIEG 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060907|ref|XP_002300286.1| predicted protein [Populus trichocarpa] gi|222847544|gb|EEE85091.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 72/78 (92%)

Query: 60  GEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKS 119
           GEEPPESLFMKELKRRGMTPTSLLE+++R + G++D+ K+ EED GFS+RN+VSTEID+ 
Sbjct: 1   GEEPPESLFMKELKRRGMTPTSLLEETNRGNYGVEDEMKIGEEDWGFSKRNSVSTEIDRG 60

Query: 120 LADQRERSMALNSEGLEG 137
           L+DQRERSMALNSEGLEG
Sbjct: 61  LSDQRERSMALNSEGLEG 78

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465109|ref|XP_004150271.1| PREDICTED: uncharacterized protein LOC101221726 [Cucumis sativus] gi|449484408|ref|XP_004156874.1| PREDICTED: uncharacterized LOC101221726 [Cucumis sativus]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 99/147 (67%), Gaps = 16/147 (10%)

Query: 3   VASLQIGKPSLLSSVSISQSNFPGK------------LDSGKVFLRSRCLIRRKFKVCCG 50
           +A+LQI K SL S  SIS SNF  +            L   +  LR  C+ RR F   C 
Sbjct: 1   MAALQILKSSL-SLPSISHSNFGSQSTRFVSDFDSLLLHGRRRSLRYACVYRR-FTFRCA 58

Query: 51  VQEGDKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRN 110
            ++ DK++NGEEPPESLFMKELK+RG+TPTSLLED++ +D  L    ++  E+  FSRR+
Sbjct: 59  AKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGG--EMTGENRDFSRRS 116

Query: 111 TVSTEIDKSLADQRERSMALNSEGLEG 137
            VSTE++KSL++QRERSM LNSEGLEG
Sbjct: 117 AVSTEVNKSLSNQRERSMQLNSEGLEG 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519125|gb|AFK47624.1| unknown [Lotus japonicus]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/133 (51%), Positives = 86/133 (64%), Gaps = 9/133 (6%)

Query: 14  LSSVSISQSNF---PGK-LDSGKVFLRSR-----CLIRRKFKVCCGVQEGDKQSNGEEPP 64
           LS +S+S+SNF   P + +     FL  R          KF V C  Q    Q+NG+E P
Sbjct: 8   LSQLSLSKSNFSRHPTRNISPPDCFLVRRIGKFQTFTASKFMVSCTSQNSQNQNNGDEAP 67

Query: 65  ESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQR 124
           ESLFMKELKRRGM PTSLLED  ++ + LD++  + EED G  +R+ VST I++ L +QR
Sbjct: 68  ESLFMKELKRRGMNPTSLLEDYKQSSNVLDEEVYVNEEDRGSPKRSAVSTNIERGLENQR 127

Query: 125 ERSMALNSEGLEG 137
           ERSMALNSEGLEG
Sbjct: 128 ERSMALNSEGLEG 140

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282351|dbj|BAJ34041.1| unnamed protein product [Thellungiella halophila]

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/143 (51%), Positives = 91/143 (63%), Gaps = 12/143 (8%)

Query: 1   MAVASLQIGKPSLLSSVSISQSNFPGKLDSGKVFLR---SRCLIR--RKFKVCCGVQEGD 55
           MA +SL+I K    S VSIS+   P KL+  K   R   SR   R  R  +VC   ++GD
Sbjct: 1   MASSSLEIVK-LCGSPVSISRHQSPVKLEPRKRVFRLADSRNWHRLGRCVRVCSSARDGD 59

Query: 56  KQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTE 115
            QS G+EPPESLFMKELKRRGMTPTSLL+D    +  +D+    KE   G S + T +T 
Sbjct: 60  NQSKGDEPPESLFMKELKRRGMTPTSLLQD---YEVDVDEVKTGKE--TGNSTKTTATTP 114

Query: 116 -IDKSLADQRERSMALNSEGLEG 137
             D+SL +QRERS+ALNSEGLEG
Sbjct: 115 AFDQSLLNQRERSLALNSEGLEG 137

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
TAIR|locus:2031010	209	AT1G50020 "AT1G50020" [Arabido	0.775	0.626	0.485	5.7e-20

TAIR|locus:2031010 AT1G50020 "AT1G50020" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 68/140 (48%), Positives = 82/140 (58%)

Query:     1 MAVASLQIGKPXXXXXXXXXXXNFPGKLDSGK-VFLRSRCLIRRKFKVCCG-VQEGDKQS 58
             MA +SL+I K            + P KL+  K VF         + +V    +  GD QS
Sbjct:     1 MASSSLEIVKLCGSPVSFPRHKS-PIKLECRKRVFRLPNSRSWHRLRVSSSALNGGDNQS 59

Query:    59 NGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTE-ID 117
              GEEPPESLFMKELKRRGMTPTSLL+D    D    D+ K  +E  G S + T +T   D
Sbjct:    60 KGEEPPESLFMKELKRRGMTPTSLLQDYE-VDQ---DEIKTGKET-GNSSKTTATTPAFD 114

Query:   118 KSLADQRERSMALNSEGLEG 137
             KSL +QRERS+ALNSEGLEG
Sbjct:   115 KSLLNQRERSLALNSEGLEG 134


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      169       158   0.00085  106 3  11 22  0.38    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  535 (57 KB)
  Total size of DFA:  119 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.54u 0.16s 17.70t   Elapsed:  00:00:00
  Total cpu time:  17.54u 0.16s 17.70t   Elapsed:  00:00:00
  Start:  Fri May 10 04:53:52 2013   End:  Fri May 10 04:53:52 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038612001 SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence; (216 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	169
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 9e-09
 Identities = 27/180 (15%), Positives = 48/180 (26%), Gaps = 46/180 (25%)

Query: 8   IGKPSLLSSVSIS---QSNFPGK---LDSGKVFLRSRCLIRRKFKVCC-----GVQEGDK 56
            GK  +   V +S   Q     K   L+          ++    K+            D 
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 57  QSNGEEPPESLFMKELKRRGMT----PTSLLEDSSRTDSGLDD---KTKLKEEDIGFSRR 109
            SN +    S+  +   RR +        LL         L +          ++   + 
Sbjct: 220 SSNIKLRIHSI--QAELRRLLKSKPYENCLLV--------LLNVQNAKAWNAFNLS-CK- 267

Query: 110 NTVSTEIDKSLADQ------RERSMALNSEGLEGRLTIPLIKKHSRELILAFLHMHSSHL 163
             + T   K + D          S+  +S  L             + L+L +L      L
Sbjct: 268 -ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT--------PDEVKSLLLKYLDCRPQDL 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00