Citrus Sinensis ID: 030948

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MFLRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFHKTLEAVTKKDPTAVTSSESQSRLKE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHcccccccEccccccccccc
Coil and Loop (DISEMBL)
mflrvigrplmakvkqttgitgldvvpNAREVLINLYNKTLKeiqavppdegyrKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKmiewdpwgvpddyeceviendapvpkhvplhrpgplpeeFHKTLEAvtkkdptavtssesqsrlke
Flexible Loop (DISEMBL)
mflrvigrplmakvkqttgitgldvvpnAREVLINLYNKTlkeiqavppdegYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFHKTLEavtkkdptavtssesqsrlke
Low Complexity Region (SEG)
MFLRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFHKTLEAVTKKDPTAVTSSESQSRLKE
Disordered region (IsUnstruct)
**LRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIEND*********************************************
Disordered Region (DISOPRED)
*FL***GRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIEN******************EFHKTLE*********************
Disordered Region (DISEMBL)
MFLRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFHKTLEAVTK*****************
Disordered Region (DISPRO)
MFLRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFHKTLEAVTKK****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFLRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFHKTLEAVTKKDPTAVTSSESQSRLKE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q9FLX7	169	Probable NADH dehydrogena	yes	no	1.0	0.994	0.810	9e-76
Q559Z4	117	Probable NADH dehydrogena	yes	no	0.595	0.854	0.45	3e-19
P23935	116	NADH dehydrogenase [ubiqu	yes	no	0.571	0.827	0.416	8e-15
Q18359	150	Probable NADH dehydrogena	yes	no	0.565	0.633	0.378	7e-14
Q9CPP6	116	NADH dehydrogenase [ubiqu	yes	no	0.571	0.827	0.406	2e-13
Q63362	116	NADH dehydrogenase [ubiqu	yes	no	0.571	0.827	0.406	4e-13
Q4R5J1	116	NADH dehydrogenase [ubiqu	N/A	no	0.571	0.827	0.395	6e-13
P0CB99	116	NADH dehydrogenase [ubiqu	yes	no	0.571	0.827	0.406	5e-12
P0CC00	116	NADH dehydrogenase [ubiqu	N/A	no	0.571	0.827	0.395	7e-12
Q0MQA2	116	NADH dehydrogenase [ubiqu	yes	no	0.571	0.827	0.395	8e-12

>sp|Q9FLX7|NDUA5_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana GN=At5g52840 PE=1 SV=1

 Score =  282 bits (721), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 137/169 (81%), Positives = 151/169 (89%), Gaps = 1/169 (0%)

Query: 1   MFLRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESF 60
           MFLR IGRPL+AKVKQTTGI GLDVVPNAR VLI+LY+KTLKEIQAVP DEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVI 120
           TRQRL VC+EEEDWE IEKRLGCGQVEELIEEA+DELTLIGKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFHKTLEAVTKKDPTAV-TSSESQSRLKE 168
           ENDAP+PKHVP HRPGPLPE+F+KTLE +  +  T +  ++ S  +LKE
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGLIAESKTEIPAATPSDPQLKE 169

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Arabidopsis thaliana (taxid: 3702)

>sp|Q559Z4|NDUA5_DICDI Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyostelium discoideum GN=ndufa5 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 69/100 (69%)

Query: 14  VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
           +K++TGITGL V PNAR +L  LYN+ LK+++ +PP  GYRK+ E  T+ RL V + E D
Sbjct: 6   IKKSTGITGLKVEPNARHILAGLYNQLLKKLEILPPTAGYRKSAELETKFRLGVIENETD 65

Query: 74  WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPD 113
             +IE ++  GQ+EELI +A+++L ++  + E   W +PD
Sbjct: 66  IVKIENKIYAGQIEELIVQAKNDLKVVDLVHESRAWELPD 105

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Dictyostelium discoideum (taxid: 44689)

>sp|P23935|NDUA5_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus GN=NDUFA5 PE=1 SV=3

 Score = 79.7 bits (195), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 61/96 (63%)

Query: 14  VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
           +K+TTG+ GL V     E L  LY K L  +  +P +  YRK  E  T ++L + + E D
Sbjct: 5   LKKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
            +++E+RL  GQ+EE+I +A++EL+L  KMI+W PW
Sbjct: 65  VKKLEERLQGGQIEEVILQAENELSLARKMIQWKPW 100

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

>sp|Q18359|NDUA5_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Caenorhabditis elegans GN=C33A12.1 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 60/95 (63%)

Query: 15  KQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDW 74
           K+TTGITGL V  +    L  +Y + L+ ++ +P D  YRK  E+  +QRL + Q E D 
Sbjct: 40  KKTTGITGLFVNEHPHRALTVVYGRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDI 99

Query: 75  EQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
           +++E+++G GQ+EE+IE+A+ EL     +++   W
Sbjct: 100 KKLEEKIGMGQIEEVIEQAEYELETTRAIVDSKAW 134

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9CPP6|NDUA5_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus GN=Ndufa5 PE=1 SV=3

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 58/96 (60%)

Query: 14  VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
           +K+TTG+ GL V     E L  LY KTL  ++  P    YRK  E  T ++L + + E D
Sbjct: 5   LKKTTGLVGLAVCDTPHERLTILYTKTLDILKHFPKHAAYRKYTEQITNEKLDMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
            +++E  L  G+VEE+I +A+ EL+L  KM++W PW
Sbjct: 65  VKKLEALLQGGEVEEVILQAEKELSLARKMLKWKPW 100

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|Q63362|NDUA5_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Rattus norvegicus GN=Ndufa5 PE=1 SV=3

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 58/96 (60%)

Query: 14  VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
           VK+TTG+ GL V     E L  LY K L  ++  P    YRK  E  T ++L++ + E D
Sbjct: 5   VKKTTGLVGLAVCDTPHERLTILYTKILDLLKHFPKHAAYRKYTEQITSEKLELVKLEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
            +++E  L  G+VEE+I +A+ EL+L  KM++W PW
Sbjct: 65  VKKLENLLQGGEVEEVILQAEKELSLARKMLQWKPW 100

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Rattus norvegicus (taxid: 10116)

>sp|Q4R5J1|NDUA5_MACFA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Macaca fascicularis GN=NDUFA5 PE=3 SV=3

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 58/96 (60%)

Query: 14  VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
           +K+TTG+ GL V     E L  LY K L  +  +P +  YRK  E  T ++L + + E D
Sbjct: 5   LKKTTGLVGLAVCSTPHERLSILYTKILDVLAEIPKNAAYRKYTEQITNEKLAMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
            +++E +L  GQ+EE+I +A+ EL+L  KM +W PW
Sbjct: 65  VKKLEDQLQGGQLEEVILQAEHELSLARKMRDWKPW 100

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Macaca fascicularis (taxid: 9541)

>sp|P0CB99|NDUA5_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Pongo abelii GN=NDUFA5 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 56/96 (58%)

Query: 14  VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
           V QTTG+ GL V     E L  LY K L  ++ +P +  YRK  E  T ++L + + E D
Sbjct: 5   VGQTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
            +++E +L  GQ+EE+I +A+ EL L  KM EW  W
Sbjct: 65  VKKLEDQLQGGQLEEVILQAEHELNLARKMKEWKLW 100

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|P0CC00|NDUA5_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Pongo pygmaeus GN=NDUFA5 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 57/96 (59%)

Query: 14  VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
           +K+TTG+ GL V     E L  LY K L  ++ +P +  YRK  E  T ++L + + E D
Sbjct: 5   LKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
            +++E +L  GQ+EE+I +A+ EL L  KM EW  W
Sbjct: 65  VKKLEDQLQGGQLEEVILQAEHELNLARKMKEWKLW 100

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|Q0MQA2|NDUA5_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Pan troglodytes GN=NDUFA5 PE=3 SV=3

 Score = 69.7 bits (169), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 57/96 (59%)

Query: 14  VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
           +K+TTG+ GL V     E L  LY K L  ++ +P +  YRK  E  T ++L + + E D
Sbjct: 5   LKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
            +++E +L  GQ+EE+I +A+ EL L  KM EW  W
Sbjct: 65  VKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLW 100

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2176917	169	AT5G52840 [Arabidopsis thalian	1.0	0.994	0.810	2.5e-72
TAIR|locus:504955387	115	AT4G28005 [Arabidopsis thalian	0.559	0.817	0.571	2.1e-32
DICTYBASE|DDB_G0272394	117	ndufa5 "NADH dehydrogenase [ub	0.636	0.914	0.429	1.5e-19
FB|FBgn0047038	124	CG6463 [Drosophila melanogaste	0.589	0.798	0.45	1.7e-18
UNIPROTKB|E1BRT9	116	NDUFA5 "Uncharacterized protei	0.571	0.827	0.416	4.1e-17
ZFIN|ZDB-GENE-050320-17	116	ndufa5 "NADH dehydrogenase (ub	0.571	0.827	0.427	1.8e-16
UNIPROTKB|P23935	116	NDUFA5 "NADH dehydrogenase [ub	0.571	0.827	0.416	3.7e-16
UNIPROTKB|E2RDU5	116	NDUFA5 "Uncharacterized protei	0.589	0.853	0.42	4.7e-16
UNIPROTKB|F1SLY2	116	NDUFA5 "Uncharacterized protei	0.571	0.827	0.395	3.3e-15
WB|WBGene00007880	150	C33A12.1 [Caenorhabditis elega	0.559	0.626	0.381	6.9e-15

TAIR|locus:2176917 AT5G52840 [Arabidopsis thaliana (taxid:3702)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 137/169 (81%), Positives = 151/169 (89%)

Query:     1 MFLRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESF 60
             MFLR IGRPL+AKVKQTTGI GLDVVPNAR VLI+LY+KTLKEIQAVP DEGYRKAVESF
Sbjct:     1 MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query:    61 TRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVI 120
             TRQRL VC+EEEDWE IEKRLGCGQVEELIEEA+DELTLIGKMIEWDPWGVPDDYECEVI
Sbjct:    61 TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query:   121 ENDAPVPKHVPLHRPGPLPEEFHKTLEAVTKKDPTAV-TSSESQSRLKE 168
             ENDAP+PKHVP HRPGPLPE+F+KTLE +  +  T +  ++ S  +LKE
Sbjct:   121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGLIAESKTEIPAATPSDPQLKE 169

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022904 "respiratory electron transport chain" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:504955387 AT4G28005 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
 Identities = 60/105 (57%), Positives = 73/105 (69%)

Query:    65 LKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIENDA 124
             ++VC EEEDW  IEKRL CG+VEELIEEA DELTL+GKMI              +I   A
Sbjct:    21 VEVCPEEEDWGVIEKRLACGKVEELIEEASDELTLVGKMI--------GSLHPNLIL--A 70

Query:   125 PVPKHVPLHRPGPLPEEFHKTLEAVTKKDPTAVTS-SESQSRLKE 168
             P+PKHVP HRPGPLPEEF++TL+AV  +  T +T+ S S  +LKE
Sbjct:    71 PIPKHVPHHRPGPLPEEFYRTLQAVNSESKTEITATSSSDPQLKE 115

GO:0005739 "mitochondrion" evidence=ISM

DICTYBASE|DDB_G0272394 ndufa5 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 46/107 (42%), Positives = 72/107 (67%)

Query:    14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
             +K++TGITGL V PNAR +L  LYN+ LK+++ +PP  GYRK+ E  T+ RL V + E D
Sbjct:     6 IKKSTGITGLKVEPNARHILAGLYNQLLKKLEILPPTAGYRKSAELETKFRLGVIENETD 65

Query:    74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVI 120
               +IE ++  GQ+EELI +A+++L ++  + E   W +PD  +  V+
Sbjct:    66 IVKIENKIYAGQIEELIVQAKNDLKVVDLVHESRAWELPDKNKPPVV 112

GO:0022904 "respiratory electron transport chain" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0047038 CG6463 [Drosophila melanogaster (taxid:7227)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 45/100 (45%), Positives = 60/100 (60%)

Query:    11 MAKV-KQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQ 69
             MAK+ K +TG+TGL V  N    L  LY K L+ +  +P D  YRK  E   +QR     
Sbjct:     1 MAKIIKASTGLTGLAVSTNPHHTLSALYGKILRAVSKMPQDASYRKYTEQLVKQRADSVA 60

Query:    70 EEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
             + +D   +EK +GCGQVEELI +A++EL L  KM+ W PW
Sbjct:    61 QHKDITALEKAVGCGQVEELIVQAENELILARKMLGWKPW 100

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

UNIPROTKB|E1BRT9 NDUFA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/96 (41%), Positives = 61/96 (63%)

Query:    14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
             +++TTG+ GL V  N  E L  LY+K L  +Q +P D  YRK  E    QR  + Q E D
Sbjct:     5 LRKTTGLVGLAVAENPHERLRILYSKILGVLQNIPRDAAYRKYTEQIVNQRYNLVQTETD 64

Query:    74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
              ++++ +L  GQ+EE+I +A++EL+L  KM++W PW
Sbjct:    65 VQKLQDKLNGGQIEEVIVQAENELSLARKMLQWKPW 100

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022904 "respiratory electron transport chain" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

ZFIN|ZDB-GENE-050320-17 ndufa5 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 41/96 (42%), Positives = 58/96 (60%)

Query:    14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
             +K+TTG+ GL V  N  E L NLY K L  +Q +P D  YRK  E    +R    + E D
Sbjct:     5 LKKTTGLVGLAVSQNPHERLGNLYVKILSCLQRIPQDAAYRKYTEQLISERFNHVKTEPD 64

Query:    74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
               ++EK++  GQ+EE+I +A+ EL+L  KM+EW  W
Sbjct:    65 VGKLEKKINAGQIEEVIAQAEAELSLSRKMVEWKAW 100

GO:0022904 "respiratory electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

UNIPROTKB|P23935 NDUFA5 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 40/96 (41%), Positives = 61/96 (63%)

Query:    14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
             +K+TTG+ GL V     E L  LY K L  +  +P +  YRK  E  T ++L + + E D
Sbjct:     5 LKKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSMVKAEPD 64

Query:    74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
              +++E+RL  GQ+EE+I +A++EL+L  KMI+W PW
Sbjct:    65 VKKLEERLQGGQIEEVILQAENELSLARKMIQWKPW 100

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0022904 "respiratory electron transport chain" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

UNIPROTKB|E2RDU5 NDUFA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 42/100 (42%), Positives = 64/100 (64%)

Query:    11 MAKV-KQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQ 69
             MA V K+TTG+ GL V  +  E L  LY K L  ++ +P +  YRK  E  T ++L + +
Sbjct:     1 MAGVLKKTTGLVGLAVCESPHERLRILYTKILDVLEQIPKNAAYRKYTEQITNEKLSMVK 60

Query:    70 EEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
              E D +++E +L  GQ+EE+I +A++EL+L  KMI+W PW
Sbjct:    61 AEPDVKKLEDQLQGGQLEEVILQAENELSLARKMIQWKPW 100

GO:0022904 "respiratory electron transport chain" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|F1SLY2 NDUFA5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 38/96 (39%), Positives = 60/96 (62%)

Query:    14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
             +K+TTG+ GL V     E L  LY K L  +  +P +  YRK  E  T ++L + + E D
Sbjct:     5 LKKTTGLVGLAVCETPHERLKILYTKILDVLGQIPKNAAYRKYTEQITNEKLGMVKAEPD 64

Query:    74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
              +++E++L  GQ+EE+I +A++EL+L  KM+ W PW
Sbjct:    65 VKKLEEQLQGGQIEEVILQAENELSLARKMLRWKPW 100

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0022904 "respiratory electron transport chain" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

WB|WBGene00007880 C33A12.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 37/97 (38%), Positives = 62/97 (63%)

Query:    15 KQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDW 74
             K+TTGITGL V  +    L  +Y + L+ ++ +P D  YRK  E+  +QRL + Q E D 
Sbjct:    40 KKTTGITGLFVNEHPHRALTVVYGRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDI 99

Query:    75 EQIEKRLGCGQVEELIEEAQDELTLIGKMIE---WDP 108
             +++E+++G GQ+EE+IE+A+ EL     +++   W+P
Sbjct:   100 KKLEEKIGMGQIEEVIEQAEYELETTRAIVDSKAWEP 136

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022904 "respiratory electron transport chain" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLX7	NDUA5_ARATH	No assigned EC number	0.8106	1.0	0.9940	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT5G52840	NADH-ubiquinone oxidoreductase-related; NADH-ubiquinone oxidoreductase-related; FUNCTIONS IN- oxidoreductase activity, acting on NADH or NADPH; INVOLVED IN- photorespiration; LOCATED IN- mitochondrion, mitochondrial membrane, chloroplast, respiratory chain complex I, membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- ETC complex I subunit (InterPro-IPR006806); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G28005.1); Has 272 Blast hits to 272 proteins in 113 species- Archae - 0; Bacteria - 0; Metazoa - 153; [...] (169 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G08690	ATP synthase beta chain 2, mitochondrial; Encodes the mitochondrial ATP synthase beta-subunit. [...] (556 aa)				•		•	•		0.983
	AT4G02580	NADH-ubiquinone oxidoreductase 24 kDa subunit, putative; NADH-ubiquinone oxidoreductase 24 kDa [...] (255 aa)				•		•	•		0.980
	AT5G67590.1-P	FRO1 (FROSTBITE1); NADH dehydrogenase (ubiquinone); Mutant leaves have a reduced capacity for c [...] (154 aa)				•		•	•		0.973
	AT4G34700	complex 1 family protein / LVR family protein; complex 1 family protein / LVR family protein; F [...] (117 aa)				•		•			0.973
	AT5G47890	NADH-ubiquinone oxidoreductase B8 subunit, putative; NADH-ubiquinone oxidoreductase B8 subunit, [...] (97 aa)				•	•	•	•		0.971
	AT3G12260	complex 1 family protein / LVR family protein; complex 1 family protein / LVR family protein; F [...] (133 aa)				•		•	•		0.970
	GAMMA_CA2	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase; Encodes mitochondrial gamma carb [...] (278 aa)				•	•	•			0.969
	AT5G47570	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (125 aa)				•		•			0.963
	AT2G02050	NADH-ubiquinone oxidoreductase B18 subunit, putative; NADH-ubiquinone oxidoreductase B18 subuni [...] (103 aa)				•		•	•		0.960
	EMB1467	EMB1467 (embryo defective 1467); NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron [...] (748 aa)				•		•	•		0.955

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam04716	57	pfam04716, ETC_C1_NDUFA5, ETC complex I subunit co	1e-22

>gnl|CDD|191068 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conserved region

 Score = 84.6 bits (210), Expect = 1e-22
 Identities = 30/57 (52%), Positives = 41/57 (71%)

Query: 27 PNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGC 83
          PN R  LI LY KTLK+++ +P D  YRK  E+ T+ RLK+ +EEED E+IEK++G 
Sbjct: 1  PNPRAALIALYTKTLKKLKKIPEDSVYRKYTEALTKHRLKIVEEEEDVEKIEKKIGA 57

Family of eukaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N-terminus of the member proteins. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG3365	145	consensus NADH:ubiquinone oxidoreductase, NDUFA5/B	100.0
PF04716	57	ETC_C1_NDUFA5: ETC complex I subunit conserved reg	99.91
PF02260	33	FATC: FATC domain; InterPro: IPR003152 The FATC do	92.64
PF05347	59	Complex1_LYR: Complex 1 protein (LYR family); Inte	89.66
PF13232	61	Complex1_LYR_1: Complex1_LYR-like	84.55

>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]

Probab=100.00  E-value=1.8e-39  Score=257.53  Aligned_cols=123  Identities=37%  Similarity=0.524  Sum_probs=117.3

Q ss_pred             hHHhhhhhhhhhhcccccccccccCCChHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHH
Q 030948            2 FLRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRL   81 (168)
Q Consensus         2 ~~~r~~~~l~~~~KktTGltGL~V~pnPr~~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~i   81 (168)
                      |.+-+.++|.+.+|+|||+|||+|++|||.+|..+|++||+++++||++++||++||+||+.||++|+.++|++.||+++
T Consensus        22 ~r~~~~~~l~g~~k~ttg~Vgl~v~~~~~~rl~~ly~kil~~~eqIpkn~ayRk~Tesit~~kLa~~k~E~d~K~ledql  101 (145)
T KOG3365|consen   22 RRFCIVQSLRGVLKKTTGIVGLAVCENPHERLRDLYTKILDVLEQIPKNAAYRKYTESITNQKLAMLKAEPDVKKLEDQL  101 (145)
T ss_pred             HHHHhhcchhchhhhhhhhhhhhccCCHHHHHHHHHHHhHHHHHHcchhhhhhHHHHHHHHHHHHHHHcchHHHHHHHHh
Confidence            44445588899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccceeecCCC
Q 030948           82 GCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIENDA  124 (168)
Q Consensus        82 g~GQIEElI~qAe~EL~L~~kM~ewKpWE~p~d~e~~v~~~~~  124 (168)
                      |||||||+|.||++||.++++|.+||||+.++++.+++...+.
T Consensus       102 ~gGqIEE~i~qa~~el~m~~k~~~wk~w~~~~e~~~~~~~~~~  144 (145)
T KOG3365|consen  102 QGGQIEEVIEQAEAELNMGRKMFEWKPWEEHVEEPPALQWCWP  144 (145)
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhcccccCccccccccccccCC
Confidence            9999999999999999999999999999999999999887764

>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=99.91  E-value=5.8e-25  Score=151.24  Aligned_cols=57  Identities=56%  Similarity=0.997  Sum_probs=56.5

Q ss_pred             CChHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHCC
Q 030948           27 PNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGC   83 (168)
Q Consensus        27 pnPr~~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig~   83 (168)
                      ||||++|+.+|++||++|++||++|+|||+||++|++||+||++++|+++||++|||
T Consensus         1 pnpr~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i~c   57 (57)
T PF04716_consen    1 PNPREALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKIGC   57 (57)
T ss_pred             CChHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHhCc
Confidence            899999999999999999999999999999999999999999999999999999998

6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane

>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases

Probab=92.64  E-value=0.11  Score=32.25  Aligned_cols=27  Identities=48%  Similarity=0.757  Sum_probs=24.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCCC
Q 030948           83 CGQVEELIEEAQDELTLIGKMIEWDPW  109 (168)
Q Consensus        83 ~GQIEElI~qAe~EL~L~~kM~ewKpW  109 (168)
                      .+||.+||.+|-|--.|++...-|-||
T Consensus         6 ~~qV~~LI~~At~~~nLa~my~GW~pw   32 (33)
T PF02260_consen    6 EQQVDELISEATDPENLARMYIGWMPW   32 (33)
T ss_dssp             THHHHHHHHHHHHHHHHHHHCTSS-TT
T ss_pred             HHHHHHHHHHHcCHHHHHHHhcchhcc
Confidence            489999999999999999999999998

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.

>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I

Probab=89.66  E-value=1.2  Score=29.14  Aligned_cols=49  Identities=29%  Similarity=0.467  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHC
Q 030948           33 LINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLG   82 (168)
Q Consensus        33 L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig   82 (168)
                      -+.||..+|.....+|..+ +|.+.-..++....-=....|..+|+..+.
T Consensus         3 vl~LYR~lLR~~~~~~~~~-~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~   51 (59)
T PF05347_consen    3 VLSLYRQLLRAARSFPDDS-EREYIRAEIRQEFRKNRNETDPEKIEELLK   51 (59)
T ss_pred             HHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            4689999999999999988 777777777776665566778777765544

The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.

>PF13232 Complex1_LYR_1: Complex1_LYR-like

Probab=84.55  E-value=5.9  Score=26.34  Aligned_cols=58  Identities=26%  Similarity=0.490  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHCCchHHHHHHHHHHHHHHH
Q 030948           33 LINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLI  100 (168)
Q Consensus        33 L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig~GQIEElI~qAe~EL~L~  100 (168)
                      ...||..+|..-..+|. ..||.++-..++.+..--....|.+         .|+.+|..|+++|.++
T Consensus         3 vL~LYR~lLR~~~~~~~-~~~r~~~~~~ir~~Fr~~~~~td~~---------~i~~~l~~~~~~L~~l   60 (61)
T PF13232_consen    3 VLSLYRQLLREASKFPD-YNFRSYFRRRIRDRFRRNKNVTDPE---------KIAKLLKEGRKELELL   60 (61)
T ss_pred             HHHHHHHHHHHhhhcCC-cchHHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHHHHHHc
Confidence            46899999999999874 5677888888888877666666664         4556666788887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 9e-06
 Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 56/153 (36%)

Query: 23  LDVVPNAREVLINLYN---KTL-----KEI-QAVPPDEGYRKAVE----SFTRQRLKVCQ 69
           L  V NA+    N +N   K L     K++   +        +++    + T        
Sbjct: 250 LLNVQNAK--AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-------- 299

Query: 70  EEEDWEQIEKRLGCGQVEELIEEAQD----ELTLIGKMIE-----WDPWG---------- 110
            +E    + K L C + ++L  E        L++I + I      WD W           
Sbjct: 300 PDEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 111 --------VPDDY-----ECEVIENDAPVPKHV 130
                    P +Y        V    A +P  +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
1w1n_A	33	Phosphatidylinositol 3-kinase TOR1; target of rapa	94.19

>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A

Probab=94.19  E-value=0.016  Score=35.23  Aligned_cols=27  Identities=33%  Similarity=0.524  Sum_probs=25.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCCC
Q 030948           83 CGQVEELIEEAQDELTLIGKMIEWDPW  109 (168)
Q Consensus        83 ~GQIEElI~qAe~EL~L~~kM~ewKpW  109 (168)
                      .|||++||.||-|--.|+....-|-||
T Consensus         6 ~~QV~~LI~~At~~~NL~~my~GW~p~   32 (33)
T 1w1n_A            6 PEQVDKLIQQATSIERLCQHYIGWCPF   32 (33)
T ss_dssp             THHHHHHHHHHHHHHHHHTTSCSCCTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHhhhcccC
Confidence            389999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00