Citrus Sinensis ID: 030997

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MSLSSITGSRQSSTLPLSRLSWQTLTPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccEEHHcccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHccccccHHccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mslssitgsrqsstlplsrlswqtltplpvqaedmsngqdekeEGVVGAIKslfdpnektksgkvlpKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWrgqktvageeSYVELEKAIRSLASFYskagpsaplpgevkSEILNDLDTAEKFL
Flexible Loop (DISEMBL)
mslssitgsrqsstlplsrlswQTLTPLPVQAEDMSNGQDEKEEGVVGAIKslfdpnektksgkvlpkaylKSARELVKTLreslkedpkdianfrrnadsakeSIRDylsnwrgqktvageesYVELEKAIRSLASFYSKAgpsaplpgevkseILNDLDTAEKFL
Low Complexity Region (SEG)
MSLSSITGSRQSSTLPLSRLSWQTLTPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL
Disordered region (IsUnstruct)
************************************************************************************************************YLSNWRGQKTVAGEESYVELEKAIRSLASF*****************************
Disordered Region (DISOPRED)
*************TLPLSRLSWQTLT*********************GAIKSLF**************AYLKSARELVKTLRES*******************ESIRDYL****************ELEKAIRSLASFYSKAGPSAPLP**VKSEILNDLDTAEKFL
Disordered Region (DISEMBL)
***************PLSRLSWQTLTPLPVQAED**********GVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL
Disordered Region (DISPRO)
******************RLSWQTLTPLPVQAEDM********EGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLSSITGSRQSSTLPLSRLSWQTLTPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDxxxxxxxxxxxxxxxxxxxxxWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
P74367	134	Photosystem II 11 kDa pro	N/A	no	0.610	0.761	0.298	4e-07
Q9LR64	174	Thylakoid lumenal protein	no	no	0.562	0.540	0.277	3e-06

>sp|P74367|PS11_SYNY3 Photosystem II 11 kDa protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1645 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 62  SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 121
           SG  L   Y +    ++ TLRE++ + P+D  N +   D+A+  I DY+S +R +    G
Sbjct: 27  SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 85

Query: 122 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 165
            +S+  ++ A+ SLA +Y+  G + P+P ++K  +  +   AE+
Sbjct: 86  LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 128

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q9LR64|Y1360_ARATH Thylakoid lumenal protein At1g03610, chloroplastic OS=Arabidopsis thaliana GN=At1g03600 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 7/101 (6%)

Query: 70  YLKSARELVKTLRESL---KEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYV 126
           Y+K    ++  +R +L   K DP    N        +E+   +++ +R +K + G+ S+ 
Sbjct: 74  YIKDTSAVISKVRSTLSMQKTDP----NVADAVAELREASNSWVAKYRKEKALLGKASFR 129

Query: 127 ELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 167
           ++  A+ +++  Y   GP+AP+P + K+ IL +++TAEK L
Sbjct: 130 DIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 170

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
225432660	209	PREDICTED: uncharacterized protein LOC10	0.856	0.684	0.811	3e-59
255552187	204	conserved hypothetical protein [Ricinus	0.844	0.691	0.795	8e-59
147790522	230	hypothetical protein VITISV_022066 [Viti	0.856	0.621	0.707	1e-55
359477522	235	PREDICTED: uncharacterized protein LOC10	0.856	0.608	0.686	3e-55
224102063	204	predicted protein [Populus trichocarpa]	0.826	0.676	0.755	4e-54
18390518	199	LOW PSII accumulation 19 protein [Arabid	0.742	0.623	0.830	1e-53
297848810	199	hypothetical protein ARALYDRAFT_470540 [	0.760	0.638	0.811	2e-53
26451618	199	unknown protein [Arabidopsis thaliana]	0.742	0.623	0.822	2e-53
388498828	208	unknown [Lotus japonicus]	0.904	0.725	0.695	5e-51
449444118	206	PREDICTED: uncharacterized protein LOC10	0.856	0.694	0.741	3e-50

>gi|225432660|ref|XP_002282406.1| PREDICTED: uncharacterized protein LOC100259756 isoform 1 [Vitis vinifera] gi|297737050|emb|CBI26251.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 116/143 (81%), Positives = 128/143 (89%)

Query: 25  LTPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRES 84
             PLPV AED SNGQ++ E+GVVGAIKSLFDPNEK KSGKVLPKAYL SARE+VKTLRES
Sbjct: 67  FLPLPVWAEDESNGQEDDEKGVVGAIKSLFDPNEKIKSGKVLPKAYLNSAREVVKTLRES 126

Query: 85  LKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGP 144
           LKEDPKDIA FRR AD+AKESIR+YLS+WRG++TV  EESY  LEKAIRSLASFYSKAGP
Sbjct: 127 LKEDPKDIAKFRRTADAAKESIREYLSSWRGKQTVVSEESYAMLEKAIRSLASFYSKAGP 186

Query: 145 SAPLPGEVKSEILNDLDTAEKFL 167
           SA LP EVKSEIL+DL+TAE+FL
Sbjct: 187 SAALPEEVKSEILDDLNTAEEFL 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552187|ref|XP_002517138.1| conserved hypothetical protein [Ricinus communis] gi|223543773|gb|EEF45301.1| conserved hypothetical protein [Ricinus communis]

 Score =  231 bits (589), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 113/142 (79%), Positives = 128/142 (90%), Gaps = 1/142 (0%)

Query: 26  TPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESL 85
           TPLPV+AED SN Q+EK+ GV+G IKSLFDPNEKTKSGK+LPKAYLKSAR++VKTLR+SL
Sbjct: 64  TPLPVRAEDESNAQEEKD-GVIGTIKSLFDPNEKTKSGKLLPKAYLKSARDVVKTLRDSL 122

Query: 86  KEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPS 145
           KEDPKD+  FRR AD+AKESIR+YL +WRGQ+ V  EESY+ELEKAIRSLASFYSKAGPS
Sbjct: 123 KEDPKDVTQFRRTADAAKESIREYLGSWRGQEKVVREESYIELEKAIRSLASFYSKAGPS 182

Query: 146 APLPGEVKSEILNDLDTAEKFL 167
           APLP EVKSEILNDL  AE+FL
Sbjct: 183 APLPEEVKSEILNDLSAAEEFL 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790522|emb|CAN69770.1| hypothetical protein VITISV_022066 [Vitis vinifera]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 116/164 (70%), Positives = 128/164 (78%), Gaps = 21/164 (12%)

Query: 25  LTPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRES 84
             PLPV AED SNGQ++ E+GVVGAIKSLFDPNEK KSGKVLPKAYL SARE+VKTLRES
Sbjct: 67  FLPLPVWAEDESNGQEDDEKGVVGAIKSLFDPNEKIKSGKVLPKAYLNSAREVVKTLRES 126

Query: 85  LKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGE---------------------E 123
           LKEDPKDIA FRR AD+AKESIR+YLS+WRG++TV  E                     E
Sbjct: 127 LKEDPKDIAKFRRTADAAKESIREYLSSWRGKQTVVSEVCILQKHFWFLRWIPVVTVXHE 186

Query: 124 SYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 167
           SY  LEKAIRSLASFYSKAGPSA LP EVKSEIL+DL+TAE+FL
Sbjct: 187 SYAMLEKAIRSLASFYSKAGPSAALPEEVKSEILDDLNTAEEFL 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477522|ref|XP_003631991.1| PREDICTED: uncharacterized protein LOC100259756 isoform 2 [Vitis vinifera]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 116/169 (68%), Positives = 128/169 (75%), Gaps = 26/169 (15%)

Query: 25  LTPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRES 84
             PLPV AED SNGQ++ E+GVVGAIKSLFDPNEK KSGKVLPKAYL SARE+VKTLRES
Sbjct: 67  FLPLPVWAEDESNGQEDDEKGVVGAIKSLFDPNEKIKSGKVLPKAYLNSAREVVKTLRES 126

Query: 85  LKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTV------------------------- 119
           LKEDPKDIA FRR AD+AKESIR+YLS+WRG++TV                         
Sbjct: 127 LKEDPKDIAKFRRTADAAKESIREYLSSWRGKQTVVSEYKGSLQLSSTAYHTRTEHFAER 186

Query: 120 -AGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 167
              EESY  LEKAIRSLASFYSKAGPSA LP EVKSEIL+DL+TAE+FL
Sbjct: 187 LGNEESYAMLEKAIRSLASFYSKAGPSAALPEEVKSEILDDLNTAEEFL 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102063|ref|XP_002312530.1| predicted protein [Populus trichocarpa] gi|118485936|gb|ABK94813.1| unknown [Populus trichocarpa] gi|222852350|gb|EEE89897.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 108/143 (75%), Positives = 125/143 (87%), Gaps = 5/143 (3%)

Query: 25  LTPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRES 84
           LTPL  +A+     ++EK++GV GAIKSLFDPNEKTKSGK+LPKAYLK+ARE+VK LRES
Sbjct: 67  LTPLQARAK-----EEEKDDGVAGAIKSLFDPNEKTKSGKLLPKAYLKAAREVVKNLRES 121

Query: 85  LKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGP 144
           LKED KDIA FRR AD+AKESIR+YL +WRGQ+ V  EESYVELEKAIRSLASFYS+AGP
Sbjct: 122 LKEDTKDIAKFRRTADAAKESIREYLGSWRGQEKVVREESYVELEKAIRSLASFYSRAGP 181

Query: 145 SAPLPGEVKSEILNDLDTAEKFL 167
           SA LP EV+SEILNDL+TAE+FL
Sbjct: 182 SAQLPEEVRSEILNDLNTAEEFL 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390518|ref|NP_563737.1| LOW PSII accumulation 19 protein [Arabidopsis thaliana] gi|8778732|gb|AAF79740.1|AC005106_21 T25N20.4 [Arabidopsis thaliana] gi|13877959|gb|AAK44057.1|AF370242_1 unknown protein [Arabidopsis thaliana] gi|23296694|gb|AAN13149.1| unknown protein [Arabidopsis thaliana] gi|332189712|gb|AEE27833.1| LOW PSII accumulation 19 protein [Arabidopsis thaliana]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/124 (83%), Positives = 115/124 (92%)

Query: 44  EGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAK 103
           EGVVGA K+LFDPNE+TKSGK LPKAYLKSARE+VKT+RESLKE+PKD A FRR+AD+AK
Sbjct: 76  EGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSADAAK 135

Query: 104 ESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTA 163
           ESIRDYLSNWRGQKTVAGEESYVELE  IR+LA FYSKAGPSAPLP EVK+EIL+DL+ A
Sbjct: 136 ESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKA 195

Query: 164 EKFL 167
           E+FL
Sbjct: 196 EEFL 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848810|ref|XP_002892286.1| hypothetical protein ARALYDRAFT_470540 [Arabidopsis lyrata subsp. lyrata] gi|297338128|gb|EFH68545.1| hypothetical protein ARALYDRAFT_470540 [Arabidopsis lyrata subsp. lyrata]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/127 (81%), Positives = 117/127 (92%)

Query: 41  EKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNAD 100
           E+ EGVVGA K+LFDPNE+TKSGK LPKAYLKSARE+VKT+RESLKE+PKD A FRR+AD
Sbjct: 73  EEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSAD 132

Query: 101 SAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDL 160
           +AKESIRDYLSNWRGQKTVAGEESYVELE  IR+LA FYSKAGPSAPLP EVK++IL+DL
Sbjct: 133 AAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTQILDDL 192

Query: 161 DTAEKFL 167
           + AE+FL
Sbjct: 193 NKAEEFL 199

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451618|dbj|BAC42906.1| unknown protein [Arabidopsis thaliana]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/124 (82%), Positives = 115/124 (92%)

Query: 44  EGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAK 103
           EGVVGA K+LFDPNE+TKSGK LPKAYLKSARE+VKT+RESLKE+P+D A FRR+AD+AK
Sbjct: 76  EGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPRDNAKFRRSADAAK 135

Query: 104 ESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTA 163
           ESIRDYLSNWRGQKTVAGEESYVELE  IR+LA FYSKAGPSAPLP EVK+EIL+DL+ A
Sbjct: 136 ESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKA 195

Query: 164 EKFL 167
           E+FL
Sbjct: 196 EEFL 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498828|gb|AFK37480.1| unknown [Lotus japonicus]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 105/151 (69%), Positives = 123/151 (81%)

Query: 17  LSRLSWQTLTPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARE 76
           L  ++   L+PL   AE+ S  +++ ++GVVGAIKSLFDPNEK+KSGKVLPKAYLKSARE
Sbjct: 58  LVTMTCGGLSPLMASAEENSADKEDDDKGVVGAIKSLFDPNEKSKSGKVLPKAYLKSARE 117

Query: 77  LVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLA 136
           +VKTLRESL E P D A FRR AD+AKESIRDYL  WRG + VA EESY  LEKAIRSLA
Sbjct: 118 VVKTLRESLNEVPDDNAKFRRTADAAKESIRDYLGGWRGNQDVAQEESYDMLEKAIRSLA 177

Query: 137 SFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 167
            FYS+AGPSAPLP EVK+EIL+ L+TAE+FL
Sbjct: 178 KFYSRAGPSAPLPEEVKTEILDYLNTAEEFL 208

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444118|ref|XP_004139822.1| PREDICTED: uncharacterized protein LOC101211891 [Cucumis sativus] gi|449492573|ref|XP_004159036.1| PREDICTED: uncharacterized LOC101211891 [Cucumis sativus]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 122/143 (85%)

Query: 25  LTPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRES 84
           LTP   QAE+M N  +E++ GV+G IKS+FDPNEKTKSGK+LPKAYLKSARE+VKTLRES
Sbjct: 64  LTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTLRES 123

Query: 85  LKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGP 144
           L+EDPKD A FRR AD+AKESIRDYLSNW G++TV  EESYV LEKAIRSLA FY+KAGP
Sbjct: 124 LQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGP 183

Query: 145 SAPLPGEVKSEILNDLDTAEKFL 167
           SAPLP  VKS+IL+DLD  E+ L
Sbjct: 184 SAPLPEAVKSDILDDLDKVEESL 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:505006101	199	LPA19 "AT1G05385" [Arabidopsis	0.820	0.688	0.775	4e-51
UNIPROTKB|P74367	134	slr1645 "Photosystem II 11 kDa	0.610	0.761	0.298	2.2e-09
TAIR|locus:2020788	174	PSB27 "AT1G03600" [Arabidopsis	0.580	0.557	0.265	5.9e-09

TAIR|locus:505006101 LPA19 "AT1G05385" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 107/138 (77%), Positives = 121/138 (87%)

Query:    30 VQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDP 89
             +QA+      DE E GVVGA K+LFDPNE+TKSGK LPKAYLKSARE+VKT+RESLKE+P
Sbjct:    63 LQAQASEEKLDEGE-GVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENP 121

Query:    90 KDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLP 149
             KD A FRR+AD+AKESIRDYLSNWRGQKTVAGEESYVELE  IR+LA FYSKAGPSAPLP
Sbjct:   122 KDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLP 181

Query:   150 GEVKSEILNDLDTAEKFL 167
              EVK+EIL+DL+ AE+FL
Sbjct:   182 DEVKTEILDDLNKAEEFL 199

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

UNIPROTKB|P74367 slr1645 "Photosystem II 11 kDa protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 31/104 (29%), Positives = 58/104 (55%)

Query:    62 SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 121
             SG  L   Y +    ++ TLRE++ + P+D  N +   D+A+  I DY+S +R +    G
Sbjct:    27 SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 85

Query:   122 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 165
              +S+  ++ A+ SLA +Y+  G + P+P ++K  +  +   AE+
Sbjct:    86 LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 128

GO:0030096 "plasma membrane-derived thylakoid photosystem II" evidence=IDA

TAIR|locus:2020788 PSB27 "AT1G03600" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 26/98 (26%), Positives = 54/98 (55%)

Query:    70 YLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELE 129
             Y+K    ++  +R +L     D  N        +E+   +++ +R +K + G+ S+ ++ 
Sbjct:    74 YIKDTSAVISKVRSTLSMQKTD-PNVADAVAELREASNSWVAKYRKEKALLGKASFRDIY 132

Query:   130 KAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 167
              A+ +++  Y   GP+AP+P + K+ IL +++TAEK L
Sbjct:   133 SALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 170


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.307   0.125   0.338    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      167       167   0.00075  108 3  11 23  0.37    33
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  559 (59 KB)
  Total size of DFA:  130 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.50u 0.08s 18.58t   Elapsed:  00:00:00
  Total cpu time:  18.50u 0.08s 18.58t   Elapsed:  00:00:00
  Start:  Fri May 10 07:08:48 2013   End:  Fri May 10 07:08:48 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019989001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (209 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
PLN00061	150	PLN00061, PLN00061, photosystem II protein Psb27;	1e-76
pfam13326	110	pfam13326, PSII_Pbs27, Photosystem II Pbs27	3e-34
TIGR03044	135	TIGR03044, PS_II_psb27, photosystem II protein Psb	6e-10
PLN00064	166	PLN00064, PLN00064, photosystem II protein Psb27;	6e-08

>gnl|CDD|215043 PLN00061, PLN00061, photosystem II protein Psb27; Provisional

 Score =  225 bits (574), Expect = 1e-76
 Identities = 113/140 (80%), Positives = 124/140 (88%), Gaps = 2/140 (1%)

Query: 25  LTPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRES 84
           +TPL  +AE+    + E+ EGVVGAIKSLFDPNEKTKSGK LPKAYLKSARE+VKTLRES
Sbjct: 13  MTPLQARAEE--EAKVEEGEGVVGAIKSLFDPNEKTKSGKKLPKAYLKSAREVVKTLRES 70

Query: 85  LKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGP 144
           LKEDPKD A FRR AD+AKESIR+YL NWRGQKTVA EESYVELEKAIRSLASFYSKAGP
Sbjct: 71  LKEDPKDEAKFRRTADAAKESIREYLGNWRGQKTVAEEESYVELEKAIRSLASFYSKAGP 130

Query: 145 SAPLPGEVKSEILNDLDTAE 164
           SAPLP +VKSEIL+DL+ AE
Sbjct: 131 SAPLPEDVKSEILDDLNKAE 150

Length = 150

>gnl|CDD|205506 pfam13326, PSII_Pbs27, Photosystem II Pbs27

 Score =  115 bits (291), Expect = 3e-34
 Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 8/116 (6%)

Query: 52  SLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLS 111
           ++  P  K      L   Y+K    +V+TLRE+L E PKD  N    A  A+E I DY+S
Sbjct: 3   AVAAPAAK------LTGDYVKDTLAVVETLRETL-ELPKDDPNRAEAAAEARELINDYVS 55

Query: 112 NWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 167
            +R   +VAG  S+  +  A+ SLA  YS  G   PLP ++K  +L +L  AEK L
Sbjct: 56  RYRRGPSVAGLASFTTMYTALNSLAGHYSSYGN-RPLPEKLKERLLKELKKAEKAL 110

This family of proteins contains Pbs27, a highly conserved component of photosystem II. Pbs27 is comprised of four helices arranged in a right handed up-down-up-down fold, with a less ordered region located at the N-terminus. Length = 110

>gnl|CDD|234098 TIGR03044, PS_II_psb27, photosystem II protein Psb27

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 77  LVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLA 136
           +++TLRE++   P D  N       A++ I DY+S +R +  V G  S+  ++ A+ SLA
Sbjct: 44  VIQTLREAIDL-PDDDPNKSEAQAEARQLINDYISRYRRRPRVNGLSSFTTMQTALNSLA 102

Query: 137 SFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 167
             Y K+  + PLP ++K  +  +L  AEK L
Sbjct: 103 GHY-KSYANRPLPEKLKERLEKELKKAEKAL 132

Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single family models, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences from Arabidopsis are not, at this time, assigned as functionally equivalent photosystem II proteins [Energy metabolism, Photosynthesis]. Length = 135

>gnl|CDD|215045 PLN00064, PLN00064, photosystem II protein Psb27; Provisional

 Score = 49.2 bits (117), Expect = 6e-08
 Identities = 27/98 (27%), Positives = 56/98 (57%), Gaps = 1/98 (1%)

Query: 70  YLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELE 129
           Y+K  ++++  +R ++  D  D  N        +E+   +++ +R +K + G  S+ ++ 
Sbjct: 66  YVKETKDVIGKVRSTINMDKTD-PNVADAVAELRETSNSWVAKYRREKALLGRPSFRDMY 124

Query: 130 KAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 167
            A+ +++  Y   GP+AP+P + K+ IL ++DTAEK L
Sbjct: 125 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 162

Length = 166

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PLN00061	150	photosystem II protein Psb27; Provisional	100.0
TIGR03044	135	PS_II_psb27 photosystem II protein Psb27. Members	100.0
PLN00064	166	photosystem II protein Psb27; Provisional	100.0
PF13326	145	PSII_Pbs27: Photosystem II Pbs27; PDB: 2KND_A 2KMF	100.0
PF07240	85	Turandot: Stress-inducible humoral factor Turandot	80.24

>PLN00061 photosystem II protein Psb27; Provisional

Probab=100.00  E-value=2.5e-63  Score=396.71  Aligned_cols=139  Identities=81%  Similarity=1.144  Sum_probs=133.2

Q ss_pred             ccccccccccccccCccccccchhhhhhhccCCCCCCcCCCCCcHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHH
Q 030997           24 TLTPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAK  103 (167)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdp~~~t~sg~~L~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ak  103 (167)
                      +++|+++||++++  +.++++||||||||||||||+||||+.|||+|++||++||++||++|+++|+|+++|++++++||
T Consensus        12 ~~~~~~~~a~~e~--~~~~~~~~~~~~~~~fdp~e~tksg~~Lpg~Y~kdtr~VV~tLresl~l~p~D~~~~~~aa~~Ak   89 (150)
T PLN00061         12 QMTPLQARAEEEA--KVEEGEGVVGAIKSLFDPNEKTKSGKKLPKAYLKSAREVVKTLRESLKEDPKDEAKFRRTADAAK   89 (150)
T ss_pred             CCCCCcchHHHHh--cccccccHHHHHHHhcCccccccccccCchHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence            4678887776655  77888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCccCcchHHHHHHHHHHHHhhHhhcCCCCCCChHHHHHHHHHHHHHH
Q 030997          104 ESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAE  164 (167)
Q Consensus       104 e~IndyvsrYRr~~~V~G~~SFttm~tALNsLAGhYssyGp~~PLPek~K~Rll~EL~~AE  164 (167)
                      ++|||||++||+++.|+|++||+||+||||+|||||++||||||||+++|+||++||++||
T Consensus        90 e~IndYisryR~~~~V~gl~SfttMqtALnsLAghYssyGpnrPLPe~lK~Rll~EL~~AE  150 (150)
T PLN00061         90 ESIREYLGNWRGQKTVAEEESYVELEKAIRSLASFYSKAGPSAPLPEDVKSEILDDLNKAE  150 (150)
T ss_pred             HHHHHHHHHhcCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999999999997

>TIGR03044 PS_II_psb27 photosystem II protein Psb27

Probab=100.00  E-value=1.5e-44  Score=285.02  Aligned_cols=104  Identities=30%  Similarity=0.494  Sum_probs=98.4

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHHHHhccCCCCccCcchHHHHHHHHHHHHhhHhh
Q 030997           62 SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSK  141 (167)
Q Consensus        62 sg~~L~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~IndyvsrYRr~~~V~G~~SFttm~tALNsLAGhYss  141 (167)
                      +.+.|+|+|.+||++||++||++|+|+.+|| ++++++++||++|||||++|||+++|+|++||+|||||||+|||||++
T Consensus        29 ~~~~Ltg~Y~~DT~~Vi~tlr~~i~lpkd~p-~~~~a~~~ar~~indyvsrYRr~~~v~g~~SFttm~TALNsLAGHY~s  107 (135)
T TIGR03044        29 AKTRLTGDYVEDTLAVIQTLREAIDLPDDDP-NKSEAQAEARQLINDYISRYRRRPRVNGLSSFTTMQTALNSLAGHYKS  107 (135)
T ss_pred             CcccccchHHHHHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHHHHHHHhcCCCCcCCcccHHHHHHHHHHHHHHhcc
Confidence            4578999999999999999999999954555 669999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCChHHHHHHHHHHHHHHhcC
Q 030997          142 AGPSAPLPGEVKSEILNDLDTAEKFL  167 (167)
Q Consensus       142 yGp~~PLPek~K~Rll~EL~~AE~aL  167 (167)
                      || |||||+|+|+||++||++||++|
T Consensus       108 y~-~rPlPeklk~Rl~~El~~AE~al  132 (135)
T TIGR03044       108 YA-NRPLPEKLKERLEKELKKAEKAL  132 (135)
T ss_pred             CC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            95 99999999999999999999986

Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.

>PLN00064 photosystem II protein Psb27; Provisional

Probab=100.00  E-value=1.9e-42  Score=280.17  Aligned_cols=103  Identities=25%  Similarity=0.525  Sum_probs=98.6

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHHHHhccCCCCccCcchHHHHHHHHHHHHhhHhhcC
Q 030997           64 KVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAG  143 (167)
Q Consensus        64 ~~L~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~IndyvsrYRr~~~V~G~~SFttm~tALNsLAGhYssyG  143 (167)
                      ...+|+|.+||.+||++||++|+|+.+|+++ +++++++|++|||||++|||+++|+|++||+|||||||+|||||++||
T Consensus        60 a~~~g~Y~~DT~aVi~~lr~tI~L~~ddp~~-a~a~aeaR~~iNdyvSrYRr~~~v~Gl~SFttMyTALNaLAGHY~Sfg  138 (166)
T PLN00064         60 AASDEEYVKETKDVIGKVRSTINMDKTDPNV-ADAVAELRETSNSWVAKYRREKALLGRPSFRDMYSALNAVSGHYISFG  138 (166)
T ss_pred             hccCCChHHHHHHHHHHHHHHHcCCCCCccH-HHHHHHHHHHHHHHHHHhcCCCcccCcccHHHHHHHHHHHHHHhhccC
Confidence            3568999999999999999999998777765 999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHHHHHhcC
Q 030997          144 PSAPLPGEVKSEILNDLDTAEKFL  167 (167)
Q Consensus       144 p~~PLPek~K~Rll~EL~~AE~aL  167 (167)
                      |+||||+|+|+||+|||++||++|
T Consensus       139 pnrPlPeKlK~RL~qE~~~AEkal  162 (166)
T PLN00064        139 PTAPIPAKRKARILEEMDTAEKAL  162 (166)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999986

>PF13326 PSII_Pbs27: Photosystem II Pbs27; PDB: 2KND_A 2KMF_A 2Y6X_A

Probab=100.00  E-value=1.3e-41  Score=269.38  Aligned_cols=110  Identities=44%  Similarity=0.621  Sum_probs=91.5

Q ss_pred             hhhccCCCCCCcCCCCCcHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHHHHhccCCCCccCcchHHHHH
Q 030997           50 IKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELE  129 (167)
Q Consensus        50 ~~~~fdp~~~t~sg~~L~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~IndyvsrYRr~~~V~G~~SFttm~  129 (167)
                      ++|. +||+      .|+++|++||++||++||++|+|+++|+ ++++++++||++|||||++|||++.|+|++||++||
T Consensus        36 ~~s~-~~~~------~l~~~Y~~dt~~vv~~lr~~l~l~~d~~-~~~~~~~~ar~~in~~vs~YRr~~~v~g~~Sf~~m~  107 (145)
T PF13326_consen   36 AKSG-DPNA------GLTGDYVKDTRAVVKTLREALELDKDDP-NRAEAAAEARELINDYVSRYRRGPSVSGLPSFTTMY  107 (145)
T ss_dssp             -----S--S------S--S-CHHHHHHHHHHHHHHHCS-TT-T-THHHHHHHHHHHHHHHHCCCCCCHHCCTSHHHHHHH
T ss_pred             cccC-Cccc------cccchHHHHHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHHHHHHHhCCCCCcCCcchHHHHH
Confidence            5566 7765      4667899999999999999999986666 559999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHhhcCCCCCCChHHHHHHHHHHHHHHhcC
Q 030997          130 KAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL  167 (167)
Q Consensus       130 tALNsLAGhYssyGp~~PLPek~K~Rll~EL~~AE~aL  167 (167)
                      +|||+|||||++|||++|||+|+|+||++||++||++|
T Consensus       108 tAln~LaghY~s~g~raPlP~k~k~rll~el~~Ae~aL  145 (145)
T PF13326_consen  108 TALNALAGHYSSYGNRAPLPEKLKERLLKELDQAEKAL  145 (145)
T ss_dssp             HHHHHHHHHCHHHTTS-S--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence            99999999999999888999999999999999999986

>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins

Probab=80.24  E-value=4.3  Score=30.43  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=29.0

Q ss_pred             HHHHHHHHhhHhhcCCCCCCChHHHHHHHHHHHH
Q 030997          129 EKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDT  162 (167)
Q Consensus       129 ~tALNsLAGhYssyGp~~PLPek~K~Rll~EL~~  162 (167)
                      ..=+.+|-+||..|-|.-||++..|+++...+.+
T Consensus         9 ~rni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~   42 (85)
T PF07240_consen    9 IRNIQELIAFYEKYSPRLPLTPQDRQRIDRFIRR   42 (85)
T ss_pred             HhhHHHHHHHHHHcCccCCCCHHHHHHHHHHHHH
Confidence            3446789999999988889999999999887765

The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
2kmf_A	115	Solution Structure Of Psb27 From Cyanobacterial Pho		3e-08
2knd_A	110	Psb27 Structure From Synechocystis Length = 110		4e-08

>pdb|2KMF|A Chain A, Solution Structure Of Psb27 From Cyanobacterial Photosystem Ii Length = 115

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 56  PNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRG 115
           P     SG  L   Y +    ++ TLRE++ + P+D  N +   D+A+  I DY+S +R 
Sbjct: 2   PLGSCDSGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRR 60
Query: 116 QKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 165
           +    G +S+  ++ A+ SLA +Y+  G + P+P ++K  +  +   AE+
Sbjct: 61  KGDAGGLKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 109

>pdb|2KND|A Chain A, Psb27 Structure From Synechocystis Length = 110

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 62  SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 121
           SG  L   Y +    ++ TLRE++ + P+D  N +   D+A+  I DY+S +R +    G
Sbjct: 3   SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 61
Query: 122 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 165
            +S+  ++ A+ SLA +Y+  G + P+P ++K  +  +   AE+
Sbjct: 62  LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
2kmf_A	115	Photosystem II 11 kDa protein; PSB27, structure, h	9e-32
2y6x_A	113	PSB27, photosystem II 11 KD protein; photosynthesi	1e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A Length = 115

 Score =  109 bits (273), Expect = 9e-32
 Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 2/112 (1%)

Query: 56  PNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRG 115
           P     SG  L   Y +    ++ TLRE++ + P+D  N +   D+A+  I DY+S +R 
Sbjct: 2   PLGSCDSGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRR 60

Query: 116 QKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 167
           +    G +S+  ++ A+ SLA +Y+  G   P+P ++K  +  +   AE+ +
Sbjct: 61  KGDAGGLKSFTTMQTALNSLAGYYTSYGA-RPIPEKLKKRLQLEFTQAERSI 111

>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus} Length = 113

 Score = 90.9 bits (225), Expect = 1e-24
 Identities = 24/102 (23%), Positives = 53/102 (51%), Gaps = 2/102 (1%)

Query: 66  LPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESY 125
           L   + +    L+ +LRE++   P++  N +     A++ + D+ + +R   ++    S+
Sbjct: 8   LTGNFREDTLALISSLREAI-ALPENDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSF 66

Query: 126 VELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 167
           + ++ A+ SLA  YS + P+ PLP ++K+ +  +    E  L
Sbjct: 67  MTMQTALNSLAGHYS-SYPNRPLPEKLKARLEQEFKQVELAL 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 9e-05
 Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 33/163 (20%)

Query: 11  QSSTLPLSR-------LSWQTLTPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSG 63
               L  +R       LS  T T + +  +  S      E      +KSL       +  
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISL--DHHSMTLTPDE------VKSLLLKYLDCRPQ 316

Query: 64  KVLPKAYLKSARELVKTLRESLKEDPKDIANFRR-NADSAKESIRDYLSNWRGQKTVAGE 122
             LP+  L +    +  + ES+++      N++  N D     I         + ++   
Sbjct: 317 D-LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII---------ESSLNVL 366

Query: 123 ESYVELEKAIRSLASFYSKAGP-SAPLPGEVKSEILNDLDTAE 164
           E   E  K    L+ F     P SA +P  + S I  D+  ++
Sbjct: 367 EPA-EYRKMFDRLSVF-----PPSAHIPTILLSLIWFDVIKSD 403

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
2kmf_A	115	Photosystem II 11 kDa protein; PSB27, structure, h	100.0
2y6x_A	113	PSB27, photosystem II 11 KD protein; photosynthesi	100.0

>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A

Probab=100.00  E-value=1.3e-44  Score=277.51  Aligned_cols=104  Identities=28%  Similarity=0.513  Sum_probs=99.1

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHHHHhccCCCCccCcchHHHHHHHHHHHHhhHhh
Q 030997           62 SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSK  141 (167)
Q Consensus        62 sg~~L~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~IndyvsrYRr~~~V~G~~SFttm~tALNsLAGhYss  141 (167)
                      +.+.||++|++||++||++||++|+|+.+|+ ++++++++||++|||||++|||++.|+|++||++||||||+|||||++
T Consensus         8 ~~~~L~~~Y~~dT~~Vv~~lr~~l~l~~d~~-~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s   86 (115)
T 2kmf_A            8 SGTGLTGNYSQDTLTVIATLREAIDLPQDAP-NRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTS   86 (115)
T ss_dssp             CCSSCCSCHHHHHHHHHHHHHHHHHSCTTCT-THHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCccHHHHHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhh
Confidence            3677999999999999999999999976666 579999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCChHHHHHHHHHHHHHHhcC
Q 030997          142 AGPSAPLPGEVKSEILNDLDTAEKFL  167 (167)
Q Consensus       142 yGp~~PLPek~K~Rll~EL~~AE~aL  167 (167)
                      || +||||+|+|+||++||++||++|
T Consensus        87 ~g-~~PlPek~k~Rl~~el~~AE~al  111 (115)
T 2kmf_A           87 YG-ARPIPEKLKKRLQLEFTQAERSI  111 (115)
T ss_dssp             HS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            98 99999999999999999999986

>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}

Probab=100.00  E-value=2.6e-44  Score=275.31  Aligned_cols=103  Identities=22%  Similarity=0.406  Sum_probs=98.2

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHHHHhccCCCCccCcchHHHHHHHHHHHHhhHhhc
Q 030997           63 GKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKA  142 (167)
Q Consensus        63 g~~L~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~IndyvsrYRr~~~V~G~~SFttm~tALNsLAGhYssy  142 (167)
                      .+.||++|++||++||++||++|+|+.+|| ++++++++||++|||||++|||++.|+|++||+|||||||+|||||++|
T Consensus         5 ~~~L~~~Y~~dT~~Vv~~lr~~l~l~~d~~-~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sfttm~tAlNaLAGHY~s~   83 (113)
T 2y6x_A            5 PTGLTGNFREDTLALISSLREAIALPENDP-NKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSY   83 (113)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHSCTTCT-THHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCccHHHHHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhc
Confidence            356999999999999999999999986666 5699999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHhcC
Q 030997          143 GPSAPLPGEVKSEILNDLDTAEKFL  167 (167)
Q Consensus       143 Gp~~PLPek~K~Rll~EL~~AE~aL  167 (167)
                      | +||||+|+|+||++||++||++|
T Consensus        84 g-~~PlPek~k~Rl~~el~~AE~al  107 (113)
T 2y6x_A           84 P-NRPLPEKLKARLEQEFKQVELAL  107 (113)
T ss_dssp             T-TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            8 99999999999999999999986

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00