Citrus Sinensis ID: 031183

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSSLSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS
Secondary Structure (PSIPRED)
ccEEEEEEEcccHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHccHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MGLVAAIGIllpfpfyywlwtqpqtwvnlcgkgkdpskIMAYVSHFLKLLQFISLYSvsslswpppfyfyplfgfgqfLNFRVYQLLGESgtyygvrfgtnipwvtefpfgyikdpqyVGSILSLLACLSWVPFRYILLWILGYLFMIRleskedpatrakpls
Flexible Loop (DISEMBL)
MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSSLSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMIRLEskedpatrakpls
Low Complexity Region (SEG)
MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSSLSWpppfyfyplfgfgqflNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS
Disordered region (IsUnstruct)
**LVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSSLSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMIRL**************
Disordered Region (DISOPRED)
*GLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSSLSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPA**A****
Disordered Region (DISEMBL)
MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSSLSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMIRLESK***********
Disordered Region (DISPRO)
MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSSLSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMIRLESK***********
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSSLSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
224115788	164	predicted protein [Populus trichocarpa]	1.0	1.0	0.829	6e-76
255543317	164	conserved hypothetical protein [Ricinus	1.0	1.0	0.829	6e-74
225443174	164	PREDICTED: probable methylene-fatty-acyl	1.0	1.0	0.798	1e-73
217075514	164	unknown [Medicago truncatula] gi|3885185	1.0	1.0	0.804	3e-73
357467929	326	Phospholipid N-methyltransferase [Medica	0.981	0.493	0.801	2e-71
18412906	164	phospholipid N-methyltransferase [Arabid	1.0	1.0	0.774	2e-70
21593732	164	unknown [Arabidopsis thaliana]	1.0	1.0	0.774	2e-70
388497308	164	unknown [Medicago truncatula]	1.0	1.0	0.762	2e-70
297839851	163	N-methyltransferase [Arabidopsis lyrata	0.993	1.0	0.780	4e-70
351725911	167	phospholipid N-methyltransferase [Glycin	1.0	0.982	0.766	7e-69

>gi|224115788|ref|XP_002332057.1| predicted protein [Populus trichocarpa] gi|222831943|gb|EEE70420.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (736), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 136/164 (82%), Positives = 153/164 (93%)

Query: 1   MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS 60
           MG+ AA+G+LLPFP+YYWLWT PQ WVNLCGK K+PSK+M++VSHFLKLLQFISL+SVS+
Sbjct: 1   MGVFAAVGVLLPFPYYYWLWTNPQAWVNLCGKDKNPSKVMSHVSHFLKLLQFISLFSVST 60

Query: 61  LSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVG 120
           LSWPPP YF+PLFGFGQFLNFRVYQLLGESGTYYGVRFG NIPWVT+FPFG I+DPQYVG
Sbjct: 61  LSWPPPLYFWPLFGFGQFLNFRVYQLLGESGTYYGVRFGKNIPWVTQFPFGVIQDPQYVG 120

Query: 121 SILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS 164
           SILSL ACLSW PF+YILLW LGY+FMI +ESKEDPATRAKP+S
Sbjct: 121 SILSLFACLSWTPFQYILLWTLGYVFMIYVESKEDPATRAKPIS 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543317|ref|XP_002512721.1| conserved hypothetical protein [Ricinus communis] gi|223547732|gb|EEF49224.1| conserved hypothetical protein [Ricinus communis]

 Score =  281 bits (719), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 136/164 (82%), Positives = 151/164 (92%)

Query: 1   MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS 60
           MG++AA+G+LLPFP+YYWLWT PQ+WVNLCGKG DP K+MAYVSHFLKLLQFISL+SVSS
Sbjct: 1   MGVLAAVGVLLPFPYYYWLWTNPQSWVNLCGKGSDPCKVMAYVSHFLKLLQFISLFSVSS 60

Query: 61  LSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVG 120
            SW PP YF+PLFGFGQFLN RVY+LLGESGTYYGVRFG +IPWVTEFPFG I+DPQYVG
Sbjct: 61  FSWLPPLYFWPLFGFGQFLNVRVYRLLGESGTYYGVRFGKSIPWVTEFPFGVIRDPQYVG 120

Query: 121 SILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS 164
           SILSLLACLSWVPF+YILLW LGY+FMI +ESKED ATRAK LS
Sbjct: 121 SILSLLACLSWVPFQYILLWSLGYVFMIHVESKEDLATRAKLLS 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443174|ref|XP_002265564.1| PREDICTED: probable methylene-fatty-acyl-phospholipid synthase [Vitis vinifera] gi|298204671|emb|CBI25169.3| unnamed protein product [Vitis vinifera]

 Score =  280 bits (717), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/164 (79%), Positives = 153/164 (93%)

Query: 1   MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS 60
           MG++A IG+LLPFPFYYWLWT PQTWV+LCG  +DPS +MA+V+H LKLLQF+SL+SV+S
Sbjct: 1   MGILAGIGVLLPFPFYYWLWTYPQTWVDLCGIKRDPSNVMAHVAHALKLLQFLSLFSVAS 60

Query: 61  LSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVG 120
           LSWPPP +F+PLFGFGQFLNFRVYQLLGE+GTYYGVRFG NIPWVT FPFG I DPQYVG
Sbjct: 61  LSWPPPLFFWPLFGFGQFLNFRVYQLLGEAGTYYGVRFGKNIPWVTAFPFGVISDPQYVG 120

Query: 121 SILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS 164
           SI+SLLAC+SWVPF+YILLW+LGY+F+I+LESKEDPATRAKPL+
Sbjct: 121 SIMSLLACISWVPFQYILLWLLGYVFIIKLESKEDPATRAKPLT 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075514|gb|ACJ86117.1| unknown [Medicago truncatula] gi|388518591|gb|AFK47357.1| unknown [Medicago truncatula]

 Score =  279 bits (713), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/164 (80%), Positives = 150/164 (91%)

Query: 1   MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS 60
           M + AAIG+L PFPFYY+LW  PQ+WV+ CGKG+DPSKIMAYV+HFLKL+QFISL+SVSS
Sbjct: 1   MDIFAAIGVLSPFPFYYYLWKWPQSWVDFCGKGRDPSKIMAYVAHFLKLIQFISLFSVSS 60

Query: 61  LSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVG 120
             WPPPFYF+PLF FGQFLNFRVYQLLGE GTYYGVRFG  IPWVTEFPFG I DPQYVG
Sbjct: 61  FHWPPPFYFWPLFAFGQFLNFRVYQLLGEPGTYYGVRFGKTIPWVTEFPFGVISDPQYVG 120

Query: 121 SILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS 164
           SI+SL+AC+SWVPF+YILLWILGY+FMIR+ESKEDP+TRAKPL+
Sbjct: 121 SIMSLVACISWVPFQYILLWILGYVFMIRVESKEDPSTRAKPLN 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467929|ref|XP_003604249.1| Phospholipid N-methyltransferase [Medicago truncatula] gi|355505304|gb|AES86446.1| Phospholipid N-methyltransferase [Medicago truncatula]

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/161 (80%), Positives = 146/161 (90%)

Query: 1   MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS 60
           M + AAIG+L PFPFYY+LW  PQ+WV+ CGKG+DPSKIMAYV+HFLKL+QFISL+SVSS
Sbjct: 1   MDIFAAIGVLSPFPFYYYLWKWPQSWVDFCGKGRDPSKIMAYVAHFLKLIQFISLFSVSS 60

Query: 61  LSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVG 120
             WPPPFYF+PLF FGQFLNFRVYQLLGE GTYYGVRFG  IPWVTEFPFG I DPQYVG
Sbjct: 61  FHWPPPFYFWPLFAFGQFLNFRVYQLLGEPGTYYGVRFGKTIPWVTEFPFGVISDPQYVG 120

Query: 121 SILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAK 161
           SI+SL+AC+SWVPF+YILLWILGY+FMIR+ESKEDP+TRA 
Sbjct: 121 SIMSLVACISWVPFQYILLWILGYVFMIRVESKEDPSTRAN 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412906|ref|NP_565246.1| phospholipid N-methyltransferase [Arabidopsis thaliana] gi|42570261|ref|NP_849916.2| phospholipid N-methyltransferase [Arabidopsis thaliana] gi|6503297|gb|AAF14673.1|AC011713_21 ESTs gb|AI994515 and gb|T44237 come from this gene [Arabidopsis thaliana] gi|194708828|gb|ACF88498.1| At1g80860 [Arabidopsis thaliana] gi|332198338|gb|AEE36459.1| phospholipid N-methyltransferase [Arabidopsis thaliana] gi|332198339|gb|AEE36460.1| phospholipid N-methyltransferase [Arabidopsis thaliana]

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/164 (77%), Positives = 145/164 (88%)

Query: 1   MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS 60
           MGL+AAIG+LLPFPFY+WLWT  Q+WVNLCG+ +DPS +MA VSH LK  Q +SL+SV+S
Sbjct: 1   MGLLAAIGVLLPFPFYWWLWTNAQSWVNLCGRERDPSTVMARVSHVLKAAQLLSLFSVAS 60

Query: 61  LSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVG 120
           LSWPPP YF+PL  FGQFLNFRVYQLLGE+GTYYGVRFG NIPWVTEFPFG I+DPQYVG
Sbjct: 61  LSWPPPLYFWPLMAFGQFLNFRVYQLLGEAGTYYGVRFGKNIPWVTEFPFGVIRDPQYVG 120

Query: 121 SILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS 164
           SI+SLLACLSWVPF+YILLW LGY+FM+ LESKEDP  RAK +S
Sbjct: 121 SIMSLLACLSWVPFQYILLWSLGYVFMMFLESKEDPNARAKSIS 164

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593732|gb|AAM65699.1| unknown [Arabidopsis thaliana]

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/164 (77%), Positives = 145/164 (88%)

Query: 1   MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS 60
           MGL+AAIG+LLPFPFY+WLWT PQ+WVNLCG+ +DPS +MA VSH LK  Q +SL+SV+S
Sbjct: 1   MGLLAAIGVLLPFPFYWWLWTNPQSWVNLCGRERDPSTVMARVSHVLKAAQLLSLFSVAS 60

Query: 61  LSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVG 120
           LSWP P YF+PL  FGQFLNFRVYQLLGE+GTYYGVRFG NIPWVTEFPFG I+DPQYVG
Sbjct: 61  LSWPSPLYFWPLMAFGQFLNFRVYQLLGEAGTYYGVRFGKNIPWVTEFPFGVIRDPQYVG 120

Query: 121 SILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS 164
           SI+SLLACLSWVPF+YILLW LGY+FM+ LESKEDP  RAK +S
Sbjct: 121 SIMSLLACLSWVPFQYILLWSLGYVFMMFLESKEDPNARAKSIS 164

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497308|gb|AFK36720.1| unknown [Medicago truncatula]

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/164 (76%), Positives = 148/164 (90%)

Query: 1   MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS 60
           MG+V AI +L  FPFYY++W  PQ+WV+LCGKG+DP+K+MAY  HFLK++QFISL+SVSS
Sbjct: 1   MGIVLAIIVLSQFPFYYYVWNWPQSWVDLCGKGRDPTKMMAYAGHFLKIIQFISLFSVSS 60

Query: 61  LSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVG 120
             WPPPFYF+PLF FGQFLNFRVYQLLGE+GTYYGVRFG  IPWVTEFPFG I DPQY+G
Sbjct: 61  FHWPPPFYFWPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKTIPWVTEFPFGVISDPQYIG 120

Query: 121 SILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS 164
           SI+SL+ACL WVPF+YILLW+LGY+FMIR+ESKEDP+TRAKPL+
Sbjct: 121 SIMSLIACLPWVPFQYILLWVLGYVFMIRVESKEDPSTRAKPLN 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839851|ref|XP_002887807.1| N-methyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297333648|gb|EFH64066.1| N-methyltransferase [Arabidopsis lyrata subsp. lyrata]

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/164 (78%), Positives = 147/164 (89%), Gaps = 1/164 (0%)

Query: 1   MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS 60
           MGL+AAIG+LLPFPFY+WLWT PQ+WVNLCG+G+DPS +MA VSH LK  Q +SL+SV+S
Sbjct: 1   MGLLAAIGVLLPFPFYWWLWTNPQSWVNLCGRGRDPSTVMARVSHVLKAAQLLSLFSVAS 60

Query: 61  LSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVG 120
           LSWPP  YF+PL  FGQFLNFRVYQLLGE+GTYYGVRFG NIPWVTEFPFG I+DPQYVG
Sbjct: 61  LSWPP-LYFWPLMAFGQFLNFRVYQLLGEAGTYYGVRFGKNIPWVTEFPFGVIRDPQYVG 119

Query: 121 SILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS 164
           SI+SLLACLSWVPF+YILLW LGY+FM+ +ESKEDP+ RAK LS
Sbjct: 120 SIMSLLACLSWVPFQYILLWSLGYVFMMFVESKEDPSARAKSLS 163

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725911|ref|NP_001236085.1| phospholipid N-methyltransferase [Glycine max] gi|226919133|gb|ACO91805.1| phospholipid N-methyltransferase [Glycine max] gi|255625745|gb|ACU13217.1| unknown [Glycine max]

 Score =  264 bits (675), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 128/167 (76%), Positives = 147/167 (88%), Gaps = 3/167 (1%)

Query: 1   MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGK---DPSKIMAYVSHFLKLLQFISLYS 57
           MG+ AAIG+L PFPFYY LW  PQ WV+LCG+G+   DPSK+MAYVS+FLKL+QFISL+ 
Sbjct: 1   MGIAAAIGLLSPFPFYYCLWIWPQWWVDLCGRGREARDPSKVMAYVSYFLKLVQFISLFY 60

Query: 58  VSSLSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQ 117
           VSS  WPPPFYF+PL  FGQFLNFRVYQLLGE+GTYYGVRFG  IPWVTEFPFG IKDPQ
Sbjct: 61  VSSFHWPPPFYFWPLIAFGQFLNFRVYQLLGETGTYYGVRFGKTIPWVTEFPFGVIKDPQ 120

Query: 118 YVGSILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS 164
           YVGSI+S+LAC SWVPF+YILLW+LGY+FM+ +ESKEDP+TRAKPL 
Sbjct: 121 YVGSIMSILACFSWVPFQYILLWVLGYVFMMHVESKEDPSTRAKPLH 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2025707	164	PLMT "phospholipid N-methyltra	1.0	1.0	0.701	2.7e-61

TAIR|locus:2025707 PLMT "phospholipid N-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 115/164 (70%), Positives = 132/164 (80%)

Query:     1 MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS 60
             MGL+AAIG+LLPFPFY+WLWT  Q+WVNLCG+ +DPS +MA VSH LK  Q +SL+SV+S
Sbjct:     1 MGLLAAIGVLLPFPFYWWLWTNAQSWVNLCGRERDPSTVMARVSHVLKAAQLLSLFSVAS 60

Query:    61 LSWXXXXXXXXXXXXXXXXNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVG 120
             LSW                NFRVYQLLGE+GTYYGVRFG NIPWVTEFPFG I+DPQYVG
Sbjct:    61 LSWPPPLYFWPLMAFGQFLNFRVYQLLGEAGTYYGVRFGKNIPWVTEFPFGVIRDPQYVG 120

Query:   121 SILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS 164
             SI+SLLACLSWVPF+YILLW LGY+FM+ LESKEDP  RAK +S
Sbjct:   121 SIMSLLACLSWVPFQYILLWSLGYVFMMFLESKEDPNARAKSIS 164


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.144   0.486    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      164       148   0.00068  104 3  11 22  0.40    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  165 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.53u 0.15s 12.68t   Elapsed:  00:00:01
  Total cpu time:  12.53u 0.15s 12.68t   Elapsed:  00:00:01
  Start:  Fri May 10 14:48:22 2013   End:  Fri May 10 14:48:23 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0000773 "phosphatidyl-N-methylethanolamine N-methyltransferase activity" evidence=IDA

GO:0008654 "phospholipid biosynthetic process" evidence=IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0080101 "phosphatidyl-N-dimethylethanolamine N-methyltransferase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0208001401 phosphatidyl-N-dimethylethanolamine N-methyltransferase (EC-2.1.1.71) (164 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
PLN02797	164	PLN02797, PLN02797, phosphatidyl-N-dimethylethanol	1e-102
pfam04191	106	pfam04191, PEMT, Phospholipid methyltransferase	7e-07

>gnl|CDD|178394 PLN02797, PLN02797, phosphatidyl-N-dimethylethanolamine N-methyltransferase

 Score =  289 bits (741), Expect = e-102
 Identities = 132/164 (80%), Positives = 150/164 (91%)

Query: 1   MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS 60
           MGL+AA+G+LLPFPFY+WLWT PQ+WVNLCG G+DPS +MA VSH LK LQF+SL+SV+S
Sbjct: 1   MGLLAAVGVLLPFPFYWWLWTNPQSWVNLCGGGRDPSHVMAQVSHALKALQFLSLFSVAS 60

Query: 61  LSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVG 120
            SWPPP YF+PLF FGQFLNFRVYQLLGE+GTYYGVRFG NIPWVTEFPFG I+DPQYVG
Sbjct: 61  FSWPPPLYFWPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKNIPWVTEFPFGVIRDPQYVG 120

Query: 121 SILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS 164
           SILSLLACLSWVPF+YILLW LGY+FM+ +ESKEDPATRAK +S
Sbjct: 121 SILSLLACLSWVPFQYILLWCLGYVFMMFVESKEDPATRAKSIS 164

Length = 164

>gnl|CDD|217954 pfam04191, PEMT, Phospholipid methyltransferase

 Score = 45.2 bits (108), Expect = 7e-07
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 70  YPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIP-WVTEFPFGYIKDPQYVGSILSLLA- 127
             L   G +L    ++ LG  GT+YG  FG  +   VT  P+ Y+++P YVGS L  L  
Sbjct: 7   LLLIALGIWLVLSSFRALGIFGTFYGDFFGILMDELVTGGPYRYLRNPMYVGSTLGFLGL 66

Query: 128 CL---SWVPFRYILLWILGYLFMIRL 150
            L   S       LL  L Y   +  
Sbjct: 67  ALITGSPAGLLLALLVFLVYYIALIF 92

The S. cerevisiae phospholipid methyltransferase (EC:2.1.1.16) has a broad substrate specificity of unsaturated phospholipids. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PLN02797	164	phosphatidyl-N-dimethylethanolamine N-methyltransf	100.0
KOG4142	208	consensus Phospholipid methyltransferase [Lipid tr	100.0
PF04191	106	PEMT: Phospholipid methyltransferase ; InterPro: I	99.64
COG2020	187	STE14 Putative protein-S-isoprenylcysteine methylt	98.5
PF04140	94	ICMT: Isoprenylcysteine carboxyl methyltransferase	98.08
COG1755	172	Uncharacterized protein conserved in bacteria [Fun	95.3
KOG2628	201	consensus Farnesyl cysteine-carboxyl methyltransfe	94.89
PF07298	191	NnrU: NnrU protein; InterPro: IPR009915 This famil	90.98
PF02544	150	Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase	90.26
PLN02392	260	probable steroid reductase DET2	88.74

>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase

Probab=100.00  E-value=4.5e-76  Score=472.19  Aligned_cols=164  Identities=80%  Similarity=1.540  Sum_probs=162.6

Q ss_pred             CccchhhhhccchhHHHHHhhCchhHHHHhcCCCCchhHHHHHHHHHHHHhHhHhhhccCCCCCCcccccchhccccchh
Q 031183            1 MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSSLSWPPPFYFYPLFGFGQFLN   80 (164)
Q Consensus         1 ~~~~~~~~~l~pf~~y~~l~t~p~~w~~~~g~~~~~~~~~a~~~~~~~ll~~l~~~~v~~~~~p~~~~g~~l~~~G~~L~   80 (164)
                      ||++|++|||+|||+|+|+|||||+|+|+|||++||+++|+++|||+|++||+++++|++|+|||++++++|+++||+||
T Consensus         1 ~~~~~~~~vL~Pfp~Y~~lwt~P~~w~~~c~~~~dp~~~ma~~sh~lk~lqfi~l~sva~f~~pppl~~~~L~aiGq~Lv   80 (164)
T PLN02797          1 MGLLAAVGVLLPFPFYWWLWTNPQSWVNLCGGGRDPSHVMAQVSHALKALQFLSLFSVASFSWPPPLYFWPLFAFGQFLN   80 (164)
T ss_pred             CchhHhhhhccchHHHHHHHhCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHhhHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcccceeecccccccCCceeeccCccCCCCchhHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhccCCccccc
Q 031183           81 FRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRA  160 (164)
Q Consensus        81 ~~s~~~LG~~GTY~Gd~fGilm~~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~vgl~l~~~V~~~ial~~EePfT~a  160 (164)
                      ++||++||++|||+||||||+|||||+|||||++||||+||||+++|+++|++++++++|+.+||++|+.|+.|||-|||
T Consensus        81 ~ss~~~LG~tGTYlGdyFGilm~~VT~FPFnv~~nPmY~GStl~fLg~al~~p~~~~~lW~lgYvfmm~iEs~edp~tra  160 (164)
T PLN02797         81 FRVYQLLGEAGTYYGVRFGKNIPWVTEFPFGVIRDPQYVGSILSLLACLSWVPFQYILLWCLGYVFMMFVESKEDPATRA  160 (164)
T ss_pred             HHHHHHhCCceeeehhhhcccccccccCCCCCCCCcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHheeeccCCchhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 031183          161 KPLS  164 (164)
Q Consensus       161 ~~~~  164 (164)
                      |++|
T Consensus       161 ~~~~  164 (164)
T PLN02797        161 KSIS  164 (164)
T ss_pred             ccCC
Confidence            9986

>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]

Probab=100.00  E-value=8.5e-40  Score=267.78  Aligned_cols=133  Identities=26%  Similarity=0.278  Sum_probs=117.5

Q ss_pred             hhHHHHhcCCCCchhHHHHHHHHHHHHhHhH-hhhc----cCCCCCCc------ccccchhccccchhhHHHHHhcccce
Q 031183           24 QTWVNLCGKGKDPSKIMAYVSHFLKLLQFIS-LYSV----SSLSWPPP------FYFYPLFGFGQFLNFRVYQLLGESGT   92 (164)
Q Consensus        24 ~~w~~~~g~~~~~~~~~a~~~~~~~ll~~l~-~~~v----~~~~~p~~------~~g~~l~~~G~~L~~~s~~~LG~~GT   92 (164)
                      ++..|.||.   |.++|..++.-|-++.+++ .+|.    +|.+....      -+|.+++..|++||+|||++||+.||
T Consensus        48 ~~Ltk~~gg---~~kaCYmLaatIf~lgivRd~~y~~Al~~QPt~~~~~~p~~~~lg~alfglG~VLVLSSmykLG~~GT  124 (208)
T KOG4142|consen   48 RKLTKAFGG---PYKACYMLAATIFLLGIVRDHCYTQALLSQPTMESLDTPAAYSLGLALFGLGVVLVLSSMYKLGFAGT  124 (208)
T ss_pred             HHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhccChHHHHHHHHHHhhhHHHHHHHHHHhccchh
Confidence            456788983   7899999999998888888 3332    33332221      26899999999999999999999999


Q ss_pred             eecccccccCC-ceeeccCccCCCCchhHHHHHHHHHHhhccchhHHHHHHHHHHHH--HhhccCCccccc
Q 031183           93 YYGVRFGTNIP-WVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMI--RLESKEDPATRA  160 (164)
Q Consensus        93 Y~Gd~fGilm~-~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~vgl~l~~~V~~~--ial~~EePfT~a  160 (164)
                      |+||||||++| ||||||||+.|||||+|||++|||+|+++++|+ |++++..|+.+  ||++||||||++
T Consensus       125 yLGDYFGiL~~eRVtgFPFNv~dNPMY~GSTl~fLg~Al~~gkpa-GLllt~~V~f~Y~iAL~~EEPFTA~  194 (208)
T KOG4142|consen  125 YLGDYFGILKEERVTGFPFNVLDNPMYWGSTLNFLGWALMHGKPA-GLLLTVLVAFTYIIALLYEEPFTAE  194 (208)
T ss_pred             hhhhhhhhhhhhhcccccccccCCcccccchHHHHHHHHHcCCcc-hhHHHHHHHHHHHHHHHhcCchHHH
Confidence            99999999999 999999999999999999999999999999999 99999999999  999999999975

>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2

Probab=99.64  E-value=9.4e-17  Score=115.66  Aligned_cols=95  Identities=26%  Similarity=0.336  Sum_probs=79.5

Q ss_pred             cccccchhccccchhhHHHHHhcccceeecccccccCC-ceeeccCccCCCCchhHHHHHHHHHHhhccchhHHHHHHHH
Q 031183           66 PFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIP-WVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGY  144 (164)
Q Consensus        66 ~~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~-~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~vgl~l~~~  144 (164)
                      ..+|+.++++|..+.+++.+.+|..+++.|+.++...+ .||++||+++|||||.|.++..+|.++..+++. ++++++.
T Consensus         3 ~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~-~l~~~~~   81 (106)
T PF04191_consen    3 FVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGSWL-GLLLAVL   81 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCcHH-HHHHHHH
Confidence            35799999999999999999999999999999998777 999999999999999999999999999999997 4444432


Q ss_pred             HHH--H-HhhccCCcccccC
Q 031183          145 LFM--I-RLESKEDPATRAK  161 (164)
Q Consensus       145 V~~--~-ial~~EePfT~a~  161 (164)
                      ...  . .+...||+..+++
T Consensus        82 ~~~~~~~~~~~~EE~~L~~~  101 (106)
T PF04191_consen   82 AFLLYYIFIIRFEERFLERR  101 (106)
T ss_pred             HHHHHHHHHHHhHHHHHHHH
Confidence            222  2 3444688877653

1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process

>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=2.1e-07  Score=75.28  Aligned_cols=91  Identities=24%  Similarity=0.239  Sum_probs=67.3

Q ss_pred             ccccchhccccchhhHHHHHhcccceeecccccccCC--ceeeccCccCCCCchhHHHHHHHHHHhhccchhHHHHHHHH
Q 031183           67 FYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIP--WVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGY  144 (164)
Q Consensus        67 ~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~--~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~vgl~l~~~  144 (164)
                      ..|..++.+|..+-.++...+|-. ..  +.--...+  .||+.||.++|||||.|.++..+|+.++.++.. ++.....
T Consensus        71 ~~g~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~~~-~l~~~~~  146 (187)
T COG2020          71 GLGLLLVGLGLALRLWAMRTLGRS-WT--VSVKARKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGSLW-ALLIFVV  146 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCC-CC--cccCCCCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHhHH-HHHHHHH
Confidence            468888899999999999999876 21  11111223  899999999999999999999999999998887 3333333


Q ss_pred             HHH-H--HhhccCCcccccC
Q 031183          145 LFM-I--RLESKEDPATRAK  161 (164)
Q Consensus       145 V~~-~--ial~~EePfT~a~  161 (164)
                      +.. +  +..+.||.+.+++
T Consensus       147 ~~~~~~~~~i~~EEr~L~~~  166 (187)
T COG2020         147 LVALLFLFRIREEERYLRAE  166 (187)
T ss_pred             HHHHHHHHHhhHHHHHHHHH
Confidence            332 2  4666788887765

>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2

Probab=98.08  E-value=4.6e-06  Score=61.29  Aligned_cols=62  Identities=29%  Similarity=0.443  Sum_probs=40.0

Q ss_pred             chhccccchhhHHHHHhcccceeecccccccCC--ceeeccCccCCCCchhHHHHHHHHHHhhccch
Q 031183           71 PLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIP--WVTEFPFGYIKDPQYVGSILSLLACLSWVPFR  135 (164)
Q Consensus        71 ~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~--~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~  135 (164)
                      +++++|+.+-.+++..||-   ++..+..+..|  .||+.||.++|||+|.|-.+..+|......++
T Consensus         3 ~~~i~g~~lr~~a~~~LG~---~ft~~v~~~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll~~~   66 (94)
T PF04140_consen    3 GLFIAGQLLRYWAIRTLGR---YFTHRVIIQPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLLFNA   66 (94)
T ss_dssp             --HHHHHHHHHHHHHHHGG---G--SS--EETT-----SSTTTTBSSHHHHH-HHHHHHHHHHHHT-
T ss_pred             hhHHHHHHHHHHHHHHccc---cCcEEEEecCCCEEecccccccccCchHHHHHHHHHHHHHHHHhH
Confidence            5678899999999999864   44455555665  99999999999999999666666655444333

1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.

>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.30  E-value=0.11  Score=43.06  Aligned_cols=110  Identities=20%  Similarity=0.179  Sum_probs=74.9

Q ss_pred             HHhcCCCCchhHHHHHHHHHHHHhHhHhhhccCCCCCCcccccchhccccchhhHHHHHhcccceeecccccccCC--ce
Q 031183           28 NLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSSLSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIP--WV  105 (164)
Q Consensus        28 ~~~g~~~~~~~~~a~~~~~~~ll~~l~~~~v~~~~~p~~~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~--~V  105 (164)
                      +..||...+...+......++++.=- +.....|+|.+ .+|.+++.+-|.+-.++++.||.-=|   .+-=++.|  .|
T Consensus        35 ~E~G~~n~~~l~ilH~~~yls~ivE~-~~~~~~f~~~~-~~gl~~~l~s~~ll~~vi~~LG~iWt---tki~ilP~h~~v  109 (172)
T COG1755          35 KEYGKTNYKLLVILHTAFYLSCIVEA-WLNNTFFNWLS-IIGLALLLFSQILLYWVIKSLGEIWT---TKIMILPNHQIV  109 (172)
T ss_pred             hhhCccccchHHHHHHHHHHHHHHHH-HHhCCcccccc-HHHHHHHHHHHHHHHHHHHHHhhhhe---eeEEEeCCceee
Confidence            35666666655544443333322111 23334677764 45789999999999999999987655   33334445  99


Q ss_pred             eeccCccCCCCchhH-HHHHHHHHHhhccchhHHHHHH
Q 031183          106 TEFPFGYIKDPQYVG-SILSLLACLSWVPFRYILLWIL  142 (164)
Q Consensus       106 TgFPFnv~~~PmY~G-stl~~lG~al~~~s~~vgl~l~  142 (164)
                      +++||..++||-|.= -+....|..+..+--.+.++.+
T Consensus       110 ~sglfk~~kHPNYflnIipEligl~Ll~~A~~Ta~l~~  147 (172)
T COG1755         110 RSGLFKTMKHPNYFLNIIPELIGLPLLCQAWYTALLFS  147 (172)
T ss_pred             ccccchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998 8889999998885554344444

>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.89  E-value=0.077  Score=44.99  Aligned_cols=108  Identities=19%  Similarity=0.154  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhHhHhh-hccCCCCCCc-c----cccchhccccchhhHHHHHhcccceee-cccccccCC--ceeeccCcc
Q 031183           42 YVSHFLKLLQFISLY-SVSSLSWPPP-F----YFYPLFGFGQFLNFRVYQLLGESGTYY-GVRFGTNIP--WVTEFPFGY  112 (164)
Q Consensus        42 ~~~~~~~ll~~l~~~-~v~~~~~p~~-~----~g~~l~~~G~~L~~~s~~~LG~~GTY~-Gd~fGilm~--~VTgFPFnv  112 (164)
                      -+++.++.+-++--. .-+++.-..+ +    .|..++..|+.+.-..+-..|-.=|=+ -+  -+..|  .||+.||.+
T Consensus        53 ~la~~~s~lef~~e~~~fP~lk~~~~l~~~~~~gl~~~~~Ge~~r~~amitag~~f~H~va~--~k~~~h~lv~~GvY~y  130 (201)
T KOG2628|consen   53 WLAFLLSWLEFLLEILLFPSLKQNSWLWSRIGLGLLMLILGEALRKIAMITAGTSFTHYVAT--KKVSDHKLVTSGVYAY  130 (201)
T ss_pred             HHHHHHHHHHHHHHHHhCcchheeeeeeeeccCceeeeehHHHHHHHHHHHHHHHHHHHHhh--ccccCceeEeccchhh
Confidence            345566666665522 2233322222 1    578888899988888887776432211 11  23334  899999999


Q ss_pred             CCCCchhHHHHHHHHHHhhccchhHHHHHHHHHHHH-Hhhc
Q 031183          113 IKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMI-RLES  152 (164)
Q Consensus       113 ~~~PmY~Gstl~~lG~al~~~s~~vgl~l~~~V~~~-ial~  152 (164)
                      +|||-|.|-.+-.+|+-.+--.|. .++.-++|.+. ++.+
T Consensus       131 ~RHPsY~g~flw~~gtq~~L~npi-s~v~f~~V~w~ff~~R  170 (201)
T KOG2628|consen  131 VRHPSYVGFFLWAAGTQTMLCNPI-SLVAFLLVVWRFFADR  170 (201)
T ss_pred             eeCchHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHhhh
Confidence            999999999999999988888887 55555555554 5544

>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins

Probab=90.98  E-value=1.5  Score=36.13  Aligned_cols=94  Identities=17%  Similarity=0.139  Sum_probs=54.2

Q ss_pred             hhHHHHhcCCCCchhHHHHHHHHHHHHhHhHhhhccC---CCCCCc----ccccchhccccchhhHHHHHhcccceeecc
Q 031183           24 QTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS---LSWPPP----FYFYPLFGFGQFLNFRVYQLLGESGTYYGV   96 (164)
Q Consensus        24 ~~w~~~~g~~~~~~~~~a~~~~~~~ll~~l~~~~v~~---~~~p~~----~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd   96 (164)
                      +++.+..|+  +..+...++.-...+.-.+.-.-.++   .-|+++    .+...+..++.++..+++..-.        
T Consensus        23 ~~l~~~lG~--~~y~~~ysllSl~~l~lii~~~~~a~~~~~lw~~~~~~~~l~~~lm~~a~il~~~a~~~~~--------   92 (191)
T PF07298_consen   23 ARLIARLGE--RGYRGLYSLLSLAGLVLIIWGYRSAPFVPPLWDPPPWLRHLANLLMLLAFILLVAALFPPN--------   92 (191)
T ss_pred             HHHHHHcCc--hhhHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHHHHHHHHHHHHHHHhccCc--------
Confidence            455667775  33344444444444333333222222   346555    3456666777777777665444        


Q ss_pred             cccccCCceeeccCccCCCCchhHHHHHHHHHHhhccchh
Q 031183           97 RFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRY  136 (164)
Q Consensus        97 ~fGilm~~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~  136 (164)
                      .|.         =+..+||||++|..+--++..+..+..+
T Consensus        93 ~~~---------i~r~~RHP~l~g~~lWA~aHLl~nGd~~  123 (191)
T PF07298_consen   93 PFS---------IYRITRHPMLLGVLLWALAHLLANGDLA  123 (191)
T ss_pred             chH---------HHHHhcCchHHHHHHHHHHHhhhcCcHH
Confidence            111         3556999999998886666667777765

NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].

>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1

Probab=90.26  E-value=0.46  Score=37.18  Aligned_cols=67  Identities=19%  Similarity=0.084  Sum_probs=51.8

Q ss_pred             cccccchhccccchhhHHHHHhcccceeecccccccCCceeeccCccCCCCchhHHHHHHHHHHhhccchh
Q 031183           66 PFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRY  136 (164)
Q Consensus        66 ~~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~  136 (164)
                      ..+|++++++|...+..+=..|---+. -|+ -+.  ..-+|+-|++++-|.|.+-++..+|+++..++..
T Consensus        42 ~~~g~~lf~~g~~~n~~~h~~L~~lr~-~~~-~~y--~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~~~~  108 (150)
T PF02544_consen   42 FIIGLALFLIGSIGNFYSHLILANLRK-PGS-KKY--KIPKGGLFEYVSCPHYFFEILIWIGFALLTGSWP  108 (150)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc-ccC-Cce--eCCCCCCcceeeehhhHHHHHHHHHHHHHHhhhh
Confidence            467999999999999999888862221 011 011  1456999999999999999999999999988654

3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane

>PLN02392 probable steroid reductase DET2

Probab=88.74  E-value=0.57  Score=40.85  Aligned_cols=69  Identities=22%  Similarity=0.199  Sum_probs=52.5

Q ss_pred             CCCcccccchhccccchhhHHHHHhcccceeecccccccCCceeeccCccCCCCchhHHHHHHHHHHhhccchh
Q 031183           63 WPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRY  136 (164)
Q Consensus        63 ~p~~~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~  136 (164)
                      |+...+|++++++|...|+.|=..|--=+. .|+  +...|  +|+=|++++.|-|.|-++..+|+++...+..
T Consensus       149 ~~~~~iG~~lF~~g~~~N~~sh~~L~~LRk-~g~--~Y~iP--~GGlF~~VscPnYf~EileW~gfal~t~s~~  217 (260)
T PLN02392        149 WWRFFGGLVVFLWGMRINVWSDRVLVGLKR-EGG--GYKVP--RGGWFELVSCPNYFGEIVEWLGWAVMTWSWA  217 (260)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCC--eeECC--CCCCcCeEcCCcHHHHHHHHHHHHHHHHHHH
Confidence            445678999999999999998777643221 011  22223  6778999999999999999999999987665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
4a2n_B	194	Isoprenylcysteine carboxyl methyltransferase; memb	98.46

>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}

Probab=98.46  E-value=3.3e-08  Score=79.23  Aligned_cols=67  Identities=13%  Similarity=0.017  Sum_probs=54.1

Q ss_pred             ccccchhccccchhhHHHHHhcccceeecccccccC-C-ceeeccCccCCCCchhHHHHHHHHHHhhccchh
Q 031183           67 FYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNI-P-WVTEFPFGYIKDPQYVGSILSLLACLSWVPFRY  136 (164)
Q Consensus        67 ~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm-~-~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~  136 (164)
                      .+|.++.++|..+...+...||-.-+-   .-.... + .||++||+++|||||.|.++..+|.++..++..
T Consensus        79 ~~G~~l~l~G~~l~~~a~~~Lg~~f~~---~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~  147 (194)
T 4a2n_B           79 LFALIVTFLNIGLFTKIHKDLGNNWSA---ILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWV  147 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGCCS---SCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccc---CCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHH
Confidence            478889999999999999998754220   011122 3 999999999999999999999999999998886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00