Citrus Sinensis ID: 031239

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MGGLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGIRHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYVALF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccEEEEEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
mgglfnqwRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELknisswndplGMLVVGIRHlgfsawkpaECAAIGNELFAWQekglsekegsedGKIIWALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKalgipensvrtYTEAEIRAGYVALF
Flexible Loop (DISEMBL)
mgglfnqwRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGIRHLGFSAWKPAECAAIGNELFAWQEKGLsekegsedgkiIWALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALgipensvrtytEAEIRAGYVALF
Low Complexity Region (SEG)
MGGLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGIRHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYVALF
Disordered region (IsUnstruct)
***LFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGIRHLGFSAWKPAECAAIGNELFAWQEKGL*******DGKIIWALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYVA**
Disordered Region (DISOPRED)
********RLCEIGLEDYLFVLLSRFLNALE*****************SSWNDPLGMLVVGIRHLGFSAWKPAECAAIGNELFAW******************ALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYVALF
Disordered Region (DISEMBL)
MGGLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGIRHLGFSAWKPAECAAIGNELFAWQEKG********DGKIIWALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYVALF
Disordered Region (DISPRO)
*GGLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGIRHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYVALF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGIRHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRxxxxxxxxxxxxxxxxxxxxxIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYVALF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q6ZY51	1196	Phosphoglucan, water diki	yes	no	0.969	0.132	0.708	2e-62
Q2QTC2	1206	Phosphoglucan, water diki	yes	no	0.963	0.130	0.670	4e-57
Q9SAC6	1399	Alpha-glucan water dikina	no	no	0.361	0.042	0.389	0.0006

>sp|Q6ZY51|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic OS=Arabidopsis thaliana GN=GWD3 PE=1 SV=1

 Score =  237 bits (605), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 130/158 (82%)

Query: 3   GLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGI 62
            +  +WRLCEIGLEDY FVLLSRFLNALET GGA  LA++V  +N++SWNDPL  LV+G+
Sbjct: 514 AMRQKWRLCEIGLEDYFFVLLSRFLNALETMGGADQLAKDVGSRNVASWNDPLDALVLGV 573

Query: 63  RHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYS 122
             +G S WK  EC AIGNEL AW+E+ L EKEG EDGK IWA+RLKATLDRARRLT EYS
Sbjct: 574 HQVGLSGWKQEECLAIGNELLAWRERDLLEKEGEEDGKTIWAMRLKATLDRARRLTAEYS 633

Query: 123 EALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYV 160
           + LLQIFP  V++LGKALGIPENSV+TYTEAEIRAG +
Sbjct: 634 DLLLQIFPPNVEILGKALGIPENSVKTYTEAEIRAGII 671

Mediates the incorporation of phosphate into starch-like phospho-alpha-glucan, mostly at the C-3 position of glucose units. Required for starch degradation, suggesting that the phosphate content of starch regulates its degradability.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 9EC: .EC: 5

>sp|Q2QTC2|PWD_ORYSJ Phosphoglucan, water dikinase, chloroplastic OS=Oryza sativa subsp. japonica GN=GWD3 PE=3 SV=2

 Score =  220 bits (560), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 126/158 (79%), Gaps = 1/158 (0%)

Query: 3   GLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGI 62
            +  +WRLCEI LEDY FVLLSRF+N LE  GG+  LA++V  +N + W+  L  LV+GI
Sbjct: 532 AMRQKWRLCEISLEDYSFVLLSRFINTLEALGGSASLAKDVA-RNTTLWDTTLDALVIGI 590

Query: 63  RHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYS 122
             + FS WK  EC AIGNE+ +W++KGLSE EG EDGK IW+LRLKATLDRARRLTEEYS
Sbjct: 591 NQVSFSGWKTDECIAIGNEILSWKQKGLSESEGCEDGKYIWSLRLKATLDRARRLTEEYS 650

Query: 123 EALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYV 160
           EALL IFP+KV ++GKALGIP+NSVRTYTEAEIRAG V
Sbjct: 651 EALLSIFPEKVMVIGKALGIPDNSVRTYTEAEIRAGIV 688

Mediates the incorporation of phosphate into starch-like phospho-alpha-glucan, mostly at the C-3 position of glucose units. May be required for starch degradation, suggesting that the phosphate content of starch regulates its degradability.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 9

EC: .

EC: 5

>sp|Q9SAC6|GWD1_ARATH Alpha-glucan water dikinase 1, chloroplastic OS=Arabidopsis thaliana GN=GWD1 PE=1 SV=2

 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 103 WALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYVA 161
           WAL  K+ LDR+R      +E  L+I     + LG  LG+ +++V  +TE  IRAG  A
Sbjct: 863 WALYAKSVLDRSRLALASKAERYLEILQPSAEYLGSCLGVDQSAVSIFTEEIIRAGSAA 921

Mediates the incorporation of phosphate into starch-like alpha-glucan, mostly at the C-6 position of glucose units. Acts as an overall regulator of starch mobilization. Required for starch degradation, suggesting that the phosphate content of starch regulates its degradability.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 9

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
225433656	1188	PREDICTED: phosphoglucan, water dikinase	0.969	0.132	0.784	6e-68
296089605	1149	unnamed protein product [Vitis vinifera]	0.969	0.137	0.784	6e-68
270269270	1202	glucan/water dikinase [Solanum tuberosum	0.969	0.131	0.759	1e-67
255555150	1174	chloroplast alpha-glucan water dikinase,	0.969	0.134	0.778	2e-67
449468804	1217	PREDICTED: phosphoglucan, water dikinase	0.944	0.126	0.746	5e-63
356534518	1190	PREDICTED: LOW QUALITY PROTEIN: phosphog	0.969	0.132	0.702	2e-62
224065250	175	predicted protein [Populus trichocarpa]	0.834	0.777	0.860	3e-62
297808657	1193	hypothetical protein ARALYDRAFT_489476 [	0.969	0.132	0.715	8e-61
53771834	1196	chloroplast alpha-glucan water dikinase	0.969	0.132	0.708	1e-60
79521972	1196	phosphoglucan, water dikinase [Arabidops	0.969	0.132	0.708	1e-60

>gi|225433656|ref|XP_002265211.1| PREDICTED: phosphoglucan, water dikinase, chloroplastic-like [Vitis vinifera]

 Score =  261 bits (668), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 124/158 (78%), Positives = 135/158 (85%)

Query: 3   GLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGI 62
            +  +WRLCEIGLEDY FVLLSRFLNALE  GGA  L EN E KN+SSWNDPLG L +GI
Sbjct: 517 AMRQKWRLCEIGLEDYSFVLLSRFLNALEAVGGAQQLKENAESKNVSSWNDPLGALFIGI 576

Query: 63  RHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYS 122
             LG S WKP EC AIGNEL AW+EKGLSE+EGSEDGK IWALRLKATLDR+RRLTEEYS
Sbjct: 577 SQLGLSGWKPEECTAIGNELLAWKEKGLSEREGSEDGKAIWALRLKATLDRSRRLTEEYS 636

Query: 123 EALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYV 160
           E LLQ+FPQKV++LGKALGIPENSVRTYTEAEIRAG +
Sbjct: 637 EVLLQMFPQKVEMLGKALGIPENSVRTYTEAEIRAGVI 674

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089605|emb|CBI39424.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (667), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 124/158 (78%), Positives = 135/158 (85%)

Query: 3   GLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGI 62
            +  +WRLCEIGLEDY FVLLSRFLNALE  GGA  L EN E KN+SSWNDPLG L +GI
Sbjct: 517 AMRQKWRLCEIGLEDYSFVLLSRFLNALEAVGGAQQLKENAESKNVSSWNDPLGALFIGI 576

Query: 63  RHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYS 122
             LG S WKP EC AIGNEL AW+EKGLSE+EGSEDGK IWALRLKATLDR+RRLTEEYS
Sbjct: 577 SQLGLSGWKPEECTAIGNELLAWKEKGLSEREGSEDGKAIWALRLKATLDRSRRLTEEYS 636

Query: 123 EALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYV 160
           E LLQ+FPQKV++LGKALGIPENSVRTYTEAEIRAG +
Sbjct: 637 EVLLQMFPQKVEMLGKALGIPENSVRTYTEAEIRAGVI 674

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270269270|gb|ACZ66259.1| glucan/water dikinase [Solanum tuberosum]

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/158 (75%), Positives = 138/158 (87%)

Query: 3   GLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGI 62
            +  +WRLCEIGLEDY FVLLSRF+NA+E  GGA WLAENV +KNISSWNDP+G L VGI
Sbjct: 531 AMRQKWRLCEIGLEDYAFVLLSRFVNAVEALGGADWLAENVTVKNISSWNDPIGALTVGI 590

Query: 63  RHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYS 122
           + LG S WKP EC A+GNEL +W+E+G+SE EGSEDGK IWALRLKATLDR+RRLTEEYS
Sbjct: 591 QQLGISGWKPEECKAVGNELLSWKERGISEIEGSEDGKTIWALRLKATLDRSRRLTEEYS 650

Query: 123 EALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYV 160
           E LLQIFP+KVQ+LGK+LGIPEN+VRT+TEAEIRAG V
Sbjct: 651 ETLLQIFPEKVQILGKSLGIPENTVRTFTEAEIRAGVV 688

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555150|ref|XP_002518612.1| chloroplast alpha-glucan water dikinase, putative [Ricinus communis] gi|223542211|gb|EEF43754.1| chloroplast alpha-glucan water dikinase, putative [Ricinus communis]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/158 (77%), Positives = 134/158 (84%)

Query: 3   GLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGI 62
            +  +WRLCEIGLEDY FVLLSR LN LE  GGA WL +NVE KN+SSWNDPLG L+VG+
Sbjct: 507 AMRQKWRLCEIGLEDYSFVLLSRLLNTLENVGGAKWLVDNVESKNVSSWNDPLGALIVGV 566

Query: 63  RHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYS 122
             LG S WKP ECAAIG+EL AWQEKGL +KEGSEDGKIIWA RLKATLDRARRLTEEYS
Sbjct: 567 HQLGLSGWKPEECAAIGSELLAWQEKGLFDKEGSEDGKIIWARRLKATLDRARRLTEEYS 626

Query: 123 EALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYV 160
           E LLQ+ PQKVQ+LG ALGIPENSVRTYTEAEIRAG +
Sbjct: 627 ETLLQLLPQKVQILGSALGIPENSVRTYTEAEIRAGVI 664

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468804|ref|XP_004152111.1| PREDICTED: phosphoglucan, water dikinase, chloroplastic-like [Cucumis sativus] gi|449484653|ref|XP_004156941.1| PREDICTED: phosphoglucan, water dikinase, chloroplastic-like [Cucumis sativus]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 7   QWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGIRHLG 66
           +WRLCEIGLEDYLFVLLSRFLN LE   GA WLAENV+ KN+SSWNDPL  L+ G   LG
Sbjct: 546 KWRLCEIGLEDYLFVLLSRFLNVLEATSGADWLAENVKSKNVSSWNDPLDALISGTHQLG 605

Query: 67  FSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYSEALL 126
            S WKP EC AI NE+ AW+EKGL+E+EG+EDG+ IW LRLKATLDR RRLTEEYSEALL
Sbjct: 606 LSGWKPEECVAIVNEIGAWKEKGLAEREGNEDGQKIWGLRLKATLDRTRRLTEEYSEALL 665

Query: 127 QIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYV 160
           QIFP+KVQ+LGKA GIPEN+VRTY EAEIRA  +
Sbjct: 666 QIFPEKVQMLGKAFGIPENNVRTYAEAEIRASVI 699

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534518|ref|XP_003535800.1| PREDICTED: LOW QUALITY PROTEIN: phosphoglucan, water dikinase, chloroplastic-like [Glycine max]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/158 (70%), Positives = 131/158 (82%)

Query: 3   GLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGI 62
            +  +WRLCEIGLEDY FVLLSRFLN  E  GGAH LAE+++ KN++SWNDPLG L++G+
Sbjct: 520 AMRQKWRLCEIGLEDYSFVLLSRFLNEFEVMGGAHRLAESIQSKNLNSWNDPLGALIIGV 579

Query: 63  RHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYS 122
             L  S WKP EC AI NEL  W ++GLSE EG+EDGK IW LRLKATLDR++RLT+EY+
Sbjct: 580 HQLKLSGWKPEECGAIENELITWSKRGLSETEGNEDGKTIWTLRLKATLDRSKRLTDEYT 639

Query: 123 EALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYV 160
           E LL+IFPQKVQ+LGKALGIPENSVRTYTEAEIRAG +
Sbjct: 640 EELLKIFPQKVQILGKALGIPENSVRTYTEAEIRAGVI 677

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065250|ref|XP_002301738.1| predicted protein [Populus trichocarpa] gi|222843464|gb|EEE81011.1| predicted protein [Populus trichocarpa]

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/136 (86%), Positives = 124/136 (91%)

Query: 25  RFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGIRHLGFSAWKPAECAAIGNELFA 84
           RFLNALE  GGA WLA+NVE KNISSWNDPLG L+VG+R LG S W+P ECAAIG EL A
Sbjct: 11  RFLNALEAAGGAKWLADNVESKNISSWNDPLGALIVGVRQLGLSGWRPEECAAIGTELLA 70

Query: 85  WQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPE 144
           WQEKGL EKEGSEDGKIIWALRLKATLDRARRLTE+YSEALLQIFPQ+VQ+LGKALGIPE
Sbjct: 71  WQEKGLFEKEGSEDGKIIWALRLKATLDRARRLTEDYSEALLQIFPQRVQILGKALGIPE 130

Query: 145 NSVRTYTEAEIRAGYV 160
           NSVRTYTEAEIRAGYV
Sbjct: 131 NSVRTYTEAEIRAGYV 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808657|ref|XP_002872212.1| hypothetical protein ARALYDRAFT_489476 [Arabidopsis lyrata subsp. lyrata] gi|297318049|gb|EFH48471.1| hypothetical protein ARALYDRAFT_489476 [Arabidopsis lyrata subsp. lyrata]

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 113/158 (71%), Positives = 130/158 (82%)

Query: 3   GLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGI 62
            +  +WRLCEIGLEDY FVLLSRFLNALET GGA  LA++V  +N+SSWNDPL  LV+G+
Sbjct: 511 AMRQKWRLCEIGLEDYFFVLLSRFLNALETMGGADQLAKDVGSRNVSSWNDPLDALVLGV 570

Query: 63  RHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYS 122
             +G S WK  EC AIGNEL AW+E+ L EKEG EDGK IWA+RLKATLDRARRLT EYS
Sbjct: 571 HQVGLSGWKQEECLAIGNELLAWRERDLLEKEGEEDGKKIWAMRLKATLDRARRLTAEYS 630

Query: 123 EALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYV 160
           + LLQIFP  V++LGKALGIPENSV+TYTEAEIRAG +
Sbjct: 631 DLLLQIFPPNVEILGKALGIPENSVKTYTEAEIRAGII 668

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|53771834|gb|AAU93516.1| chloroplast alpha-glucan water dikinase isoform 3 [Arabidopsis thaliana]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 130/158 (82%)

Query: 3   GLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGI 62
            +  +WRLCEIGLEDY FVLLSRFLNALET GGA  LA++V  +N++SWNDPL  LV+G+
Sbjct: 514 AMRQKWRLCEIGLEDYFFVLLSRFLNALETMGGADQLAKDVGSRNVASWNDPLDALVLGV 573

Query: 63  RHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYS 122
             +G S WK  EC AIGNEL AW+E+ L EKEG EDGK IWA+RLKATLDRARRLT EYS
Sbjct: 574 HQVGLSGWKQEECLAIGNELLAWRERDLLEKEGEEDGKTIWAMRLKATLDRARRLTAEYS 633

Query: 123 EALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYV 160
           + LLQIFP  V++LGKALGIPENSV+TYTEAEIRAG +
Sbjct: 634 DLLLQIFPPNVEILGKALGIPENSVKTYTEAEIRAGII 671

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79521972|ref|NP_198009.3| phosphoglucan, water dikinase [Arabidopsis thaliana] gi|75136610|sp|Q6ZY51.1|PWD_ARATH RecName: Full=Phosphoglucan, water dikinase, chloroplastic; Flags: Precursor gi|46367508|emb|CAG25776.1| phosphoglucan, water dikinase [Arabidopsis thaliana] gi|332006172|gb|AED93555.1| phosphoglucan, water dikinase [Arabidopsis thaliana]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 130/158 (82%)

Query: 3   GLFNQWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGI 62
            +  +WRLCEIGLEDY FVLLSRFLNALET GGA  LA++V  +N++SWNDPL  LV+G+
Sbjct: 514 AMRQKWRLCEIGLEDYFFVLLSRFLNALETMGGADQLAKDVGSRNVASWNDPLDALVLGV 573

Query: 63  RHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYS 122
             +G S WK  EC AIGNEL AW+E+ L EKEG EDGK IWA+RLKATLDRARRLT EYS
Sbjct: 574 HQVGLSGWKQEECLAIGNELLAWRERDLLEKEGEEDGKTIWAMRLKATLDRARRLTAEYS 633

Query: 123 EALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYV 160
           + LLQIFP  V++LGKALGIPENSV+TYTEAEIRAG +
Sbjct: 634 DLLLQIFPPNVEILGKALGIPENSVKTYTEAEIRAGII 671

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2151089	1196	PWD "PHOSPHOGLUCAN WATER DIKIN	0.944	0.128	0.727	4.7e-57

TAIR|locus:2151089 PWD "PHOSPHOGLUCAN WATER DIKINASE" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.7e-57, P = 4.7e-57
 Identities = 112/154 (72%), Positives = 129/154 (83%)

Query:     7 QWRLCEIGLEDYLFVLLSRFLNALETKGGAHWLAENVELKNISSWNDPLGMLVVGIRHLG 66
             +WRLCEIGLEDY FVLLSRFLNALET GGA  LA++V  +N++SWNDPL  LV+G+  +G
Sbjct:   518 KWRLCEIGLEDYFFVLLSRFLNALETMGGADQLAKDVGSRNVASWNDPLDALVLGVHQVG 577

Query:    67 FSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYSEALL 126
              S WK  EC AIGNEL AW+E+ L EKEG EDGK IWA+RLKATLDRARRLT EYS+ LL
Sbjct:   578 LSGWKQEECLAIGNELLAWRERDLLEKEGEEDGKTIWAMRLKATLDRARRLTAEYSDLLL 637

Query:   127 QIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYV 160
             QIFP  V++LGKALGIPENSV+TYTEAEIRAG +
Sbjct:   638 QIFPPNVEILGKALGIPENSVKTYTEAEIRAGII 671


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      163       163   0.00084  107 3  11 22  0.38    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  171 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.55u 0.17s 14.72t   Elapsed:  00:00:01
  Total cpu time:  14.55u 0.17s 14.72t   Elapsed:  00:00:01
  Start:  Mon May 20 20:53:25 2013   End:  Mon May 20 20:53:26 2013

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:2001070 "starch binding" evidence=IEA

GO:0005983 "starch catabolic process" evidence=TAS

GO:0009536 "plastid" evidence=IDA

GO:0051752 "phosphoglucan, water dikinase activity" evidence=ISS;IDA

GO:0005982 "starch metabolic process" evidence=RCA;IMP

GO:0019200 "carbohydrate kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6ZY51	PWD_ARATH	2, ., 7, ., 9, ., 5	0.7088	0.9693	0.1321	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00