Citrus Sinensis ID: 031347

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MAGAKLCGGDTAFLLRSHSHSHSHFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRLMQKA
Secondary Structure (PSIPRED)
ccccccccccccHHccccccccHHHHHHHHcccccccccccccccccccccHHEEEEEccccccccccccccccccccEEEEEEccccccHHcHHHHHHHHHcccEEEEcccccEEEccccccHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHEEEccccEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccEEccccccccccEEEEEEccccccHHHHHHHHHHHHcccEEEEEcccEEEEEEccccHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
magaklcggdtafllrshshshsHFLEAAtrraapfpgrvssvspnpkpsrYRILAMTVkrspkrlkysapqftkegglmyveadpsgadswklEPVVELLKEgavgviptdTLYAIVCDLKSHSAIERLRRIknvepskvRKIASHIFSIFIIWRLMQKA
Flexible Loop (DISEMBL)
MAGAKLCGGDTAFLLRSHSHSHSHFLEAATrraapfpgrvssvspnpkpsryRILAmtvkrspkrlkysapqftkeggLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKShsaierlrriknvepskvrkiashIFSIFIIWRLMQKA
Low Complexity Region (SEG)
MAGAKLCGGDTAFLLRshshshshFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRLMQKA
Disordered region (IsUnstruct)
***********AFL**************************************************************GGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRLM***
Disordered Region (DISOPRED)
***********AFLLRSH************************************************************LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRLMQKA
Disordered Region (DISEMBL)
MAGAKLCGGDTAFLLRSHSHSHSHFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRLMQKA
Disordered Region (DISPRO)
*AGAKLCGGDTAFLLRSHS*SH**FLEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRLMQKA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGAKLCGGDTAFLLRSHSHSHSHFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRLMQKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
224055737	322	predicted protein [Populus trichocarpa]	0.788	0.394	0.682	1e-42
118489827	313	unknown [Populus trichocarpa x Populus d	0.745	0.383	0.704	2e-41
225451447	306	PREDICTED: uncharacterized protein HI_11	0.559	0.294	0.788	5e-35
297832740	305	yrdC family protein [Arabidopsis lyrata	0.571	0.301	0.728	1e-33
22330801	307	putative translation factor [Arabidopsis	0.782	0.410	0.566	3e-33
356571525	308	PREDICTED: uncharacterized protein HI_11	0.677	0.353	0.663	1e-32
147841978	329	hypothetical protein VITISV_012595 [Viti	0.521	0.255	0.785	2e-32
449455846	309	PREDICTED: uncharacterized protein HI_11	0.677	0.352	0.632	2e-32
255536893	326	sua5, putative [Ricinus communis] gi|223	0.608	0.300	0.72	7e-32
6513939	297	hypothetical protein [Arabidopsis thalia	0.726	0.393	0.559	4e-30

>gi|224055737|ref|XP_002298628.1| predicted protein [Populus trichocarpa] gi|222845886|gb|EEE83433.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/129 (68%), Positives = 105/129 (81%), Gaps = 2/129 (1%)

Query: 26  LEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEAD 85
           L    R  APFP  VS  +P  KP R R+L+M +KRSPKRLKYSAP+FTKE GL+YVEAD
Sbjct: 21  LTTLRRHVAPFPSLVSFNTP--KPPRLRVLSMAIKRSPKRLKYSAPRFTKEDGLLYVEAD 78

Query: 86  PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIA 145
             G+D+WKLEPV+ELLK+GAVGVIPTDT+YAIVCDLKS+SAIERLRRIKN+EPSK R +A
Sbjct: 79  ELGSDTWKLEPVIELLKQGAVGVIPTDTVYAIVCDLKSNSAIERLRRIKNIEPSKARNMA 138

Query: 146 SHIFSIFII 154
           S    ++I+
Sbjct: 139 SLHSPLYIL 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489827|gb|ABK96713.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/122 (70%), Positives = 99/122 (81%), Gaps = 2/122 (1%)

Query: 26  LEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEAD 85
           L    R  APFP  VS  +P  KP R R+L+M +KRSPKRLKYSAP+FTKE GL+YVEAD
Sbjct: 21  LTTLRRHVAPFPSLVSFNTP--KPPRLRVLSMAIKRSPKRLKYSAPRFTKEDGLLYVEAD 78

Query: 86  PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIA 145
             G+D+WKLEPV+ELLK+GAVGVIPTDT+YAIVCDLKS+SAIERLRRIKN+EPSK   I 
Sbjct: 79  ELGSDTWKLEPVIELLKQGAVGVIPTDTVYAIVCDLKSNSAIERLRRIKNIEPSKPLSIL 138

Query: 146 SH 147
            H
Sbjct: 139 CH 140

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451447|ref|XP_002273946.1| PREDICTED: uncharacterized protein HI_1198 [Vitis vinifera] gi|296082345|emb|CBI21350.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/90 (78%), Positives = 82/90 (91%)

Query: 51  RYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIP 110
           R+R +A+  KRSPKRLKYSAP+F+KE GL+YVEADPSG DSWKLEPV +LLKEGAVGVIP
Sbjct: 36  RFRFVALAAKRSPKRLKYSAPRFSKEDGLLYVEADPSGTDSWKLEPVADLLKEGAVGVIP 95

Query: 111 TDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
           TDT+YAIVC L+SHSAIERLRRIK++E SK
Sbjct: 96  TDTVYAIVCHLRSHSAIERLRRIKDIEASK 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832740|ref|XP_002884252.1| yrdC family protein [Arabidopsis lyrata subsp. lyrata] gi|297330092|gb|EFH60511.1| yrdC family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 81/92 (88%)

Query: 49  PSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGV 108
           P R+ I+A+  KRSPKRLKYS P+FTKEG L+Y+E DP GADSWKL+PV+ELLK+GAVGV
Sbjct: 36  PRRHTIVALAAKRSPKRLKYSTPRFTKEGELVYIEVDPFGADSWKLQPVIELLKQGAVGV 95

Query: 109 IPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
           IPTDT+YA+VCD K+HSA+ERLRRIK +E SK
Sbjct: 96  IPTDTVYALVCDCKNHSAVERLRRIKKIESSK 127

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330801|ref|NP_566156.2| putative translation factor [Arabidopsis thaliana] gi|6091731|gb|AAF03443.1|AC010797_19 hypothetical protein [Arabidopsis thaliana] gi|19310491|gb|AAL84979.1| At3g1920/F28J7.25 [Arabidopsis thaliana] gi|23505865|gb|AAN28792.1| At3g1920/F28J7.25 [Arabidopsis thaliana] gi|332640214|gb|AEE73735.1| putative translation factor [Arabidopsis thaliana]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/143 (56%), Positives = 98/143 (68%), Gaps = 17/143 (11%)

Query: 1   MAGAKLCGGDTA---FLLRSHSHSHSHFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAM 57
           MA AKL GG  A    LL     +H        RR +  P   +S+SP     R  I+A+
Sbjct: 1   MAVAKLHGGGMAAMRLLLLPSPMTH--------RRPSTLPS-TASLSP-----RRYIVAL 46

Query: 58  TVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAI 117
             KRSPKRLKYS P+FTKEG L+Y+E DP G DSWKL+PV++LLK+GAVGVIPTDT+YAI
Sbjct: 47  AAKRSPKRLKYSTPRFTKEGELVYIEVDPCGVDSWKLQPVIDLLKQGAVGVIPTDTVYAI 106

Query: 118 VCDLKSHSAIERLRRIKNVEPSK 140
            CD K+HSA+ERLRRIK +E SK
Sbjct: 107 ACDCKNHSAVERLRRIKKIESSK 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571525|ref|XP_003553927.1| PREDICTED: uncharacterized protein HI_1198-like [Glycine max]

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 86/110 (78%), Gaps = 1/110 (0%)

Query: 41  SSVSPNPKPSRYRILAMTVKRSPKRLKY-SAPQFTKEGGLMYVEADPSGADSWKLEPVVE 99
           + VS  P   R  +++M  KRSPKRLKY SA +FTKE GL+Y+EADPS +DSWKLEP+  
Sbjct: 29  TRVSFCPPRRRSGLVSMVAKRSPKRLKYTSASRFTKEDGLVYIEADPSASDSWKLEPIAN 88

Query: 100 LLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIF 149
           LLK+GAVGVIPTDT+YAIVCDL+S SAIERLRRIKN+E SK   I  H F
Sbjct: 89  LLKQGAVGVIPTDTMYAIVCDLRSQSAIERLRRIKNIEASKPLSILCHSF 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841978|emb|CAN72004.1| hypothetical protein VITISV_012595 [Vitis vinifera]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/84 (78%), Positives = 77/84 (91%)

Query: 51  RYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIP 110
           R+R +A+  KRSPKRLKYSAP+F+KE GL+YVEADPSG DSWKLEPV +LLKEGAVGVIP
Sbjct: 64  RFRFVALAAKRSPKRLKYSAPRFSKEDGLLYVEADPSGTDSWKLEPVADLLKEGAVGVIP 123

Query: 111 TDTLYAIVCDLKSHSAIERLRRIK 134
           TDT+YAIVC L+SHSAIERLRR++
Sbjct: 124 TDTVYAIVCHLRSHSAIERLRRLQ 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455846|ref|XP_004145661.1| PREDICTED: uncharacterized protein HI_1198-like [Cucumis sativus] gi|449502016|ref|XP_004161520.1| PREDICTED: uncharacterized protein HI_1198-like [Cucumis sativus]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/117 (63%), Positives = 89/117 (76%), Gaps = 8/117 (6%)

Query: 33  AAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSW 92
           A PF G  +S        R ++LAM VKRSPKRLKYSAP+FTKEG L+YV+A+ SG D W
Sbjct: 34  ATPFDGFETS-------RRLQVLAMVVKRSPKRLKYSAPRFTKEGSLIYVKAE-SGEDGW 85

Query: 93  KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIF 149
           KL+P+V LLKEGAVGVIPTDT+Y IVCDLK+ SAIER++RIKN+EP+K   I    F
Sbjct: 86  KLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAIERMQRIKNIEPTKPLSILCRSF 142

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536893|ref|XP_002509513.1| sua5, putative [Ricinus communis] gi|223549412|gb|EEF50900.1| sua5, putative [Ricinus communis]

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 81/100 (81%), Gaps = 2/100 (2%)

Query: 34  APFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWK 93
           APF  RVS  S   KP R  +LAM  KRSPKRLKYS P+FTKE  L+YVEAD SGADSWK
Sbjct: 29  APFASRVSFHSR--KPPRLLVLAMATKRSPKRLKYSTPRFTKEDALVYVEADASGADSWK 86

Query: 94  LEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRI 133
           L+PV+ELL EGAVGVIPTDT+YA+VC LKSHSA+ERLR +
Sbjct: 87  LDPVIELLNEGAVGVIPTDTVYAMVCHLKSHSAVERLRSL 126

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6513939|gb|AAF14843.1|AC011664_25 hypothetical protein [Arabidopsis thaliana]

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/134 (55%), Positives = 89/134 (66%), Gaps = 17/134 (12%)

Query: 1   MAGAKLCGGDTA---FLLRSHSHSHSHFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAM 57
           MA AKL GG  A    LL     +H        RR +  P   S       P RY I+A+
Sbjct: 1   MAVAKLHGGGMAAMRLLLLPSPMTH--------RRPSTLPSTASL-----SPRRY-IVAL 46

Query: 58  TVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAI 117
             KRSPKRLKYS P+FTKEG L+Y+E DP G DSWKL+PV++LLK+GAVGVIPTDT+YAI
Sbjct: 47  AAKRSPKRLKYSTPRFTKEGELVYIEVDPCGVDSWKLQPVIDLLKQGAVGVIPTDTVYAI 106

Query: 118 VCDLKSHSAIERLR 131
            CD K+HSA+ERLR
Sbjct: 107 ACDCKNHSAVERLR 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2078668	307	AT3G01920 [Arabidopsis thalian	0.801	0.420	0.571	1.5e-33
UNIPROTKB|Q885M0	209	PSPTO_1811 "Sua5/YciO/YrdC/Ywl	0.354	0.272	0.315	0.00051

TAIR|locus:2078668 AT3G01920 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 80/140 (57%), Positives = 97/140 (69%)

Query:     1 MAGAKLCGGDTAFLLRXXXXXXXXFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVK 60
             MA AKL GG  A  +R              RR +  P   +S+SP     RY I+A+  K
Sbjct:     1 MAVAKLHGGGMA-AMRLLLLPS----PMTHRRPSTLPS-TASLSPR----RY-IVALAAK 49

Query:    61 RSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCD 120
             RSPKRLKYS P+FTKEG L+Y+E DP G DSWKL+PV++LLK+GAVGVIPTDT+YAI CD
Sbjct:    50 RSPKRLKYSTPRFTKEGELVYIEVDPCGVDSWKLQPVIDLLKQGAVGVIPTDTVYAIACD 109

Query:   121 LKSHSAIERLRRIKNVEPSK 140
              K+HSA+ERLRRIK +E SK
Sbjct:   110 CKNHSAVERLRRIKKIESSK 129

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q885M0 PSPTO_1811 "Sua5/YciO/YrdC/YwlC family protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 101 (40.6 bits), Expect = 0.00051, P = 0.00051
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query:    81 YVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVE 137
             + +  P       ++   E++K G + V PTD+ YA+ C +   SAIER+RR++ ++
Sbjct:     4 FFQVHPENPQPRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLD 60


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       153   0.00081  105 3  11 22  0.45    31
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  137 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.70u 0.08s 16.78t   Elapsed:  00:00:02
  Total cpu time:  16.70u 0.08s 16.78t   Elapsed:  00:00:02
  Start:  Fri May 10 22:26:58 2013   End:  Fri May 10 22:27:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.3086.1 hypothetical protein (261 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
pfam01300	178	pfam01300, Sua5_yciO_yrdC, Telomere recombination	6e-12
COG0009	211	COG0009, SUA5, Putative translation factor (SUA5)	1e-10
TIGR00057	201	TIGR00057, TIGR00057, tRNA threonylcarbamoyl adeno	1e-07
PRK11630	206	PRK11630, PRK11630, hypothetical protein; Provisio	2e-05

>gnl|CDD|216422 pfam01300, Sua5_yciO_yrdC, Telomere recombination

 Score = 60.2 bits (147), Expect = 6e-12
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 99  ELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
           E L++G +   PTDT+Y + CD  +  A+ERLR IK     K
Sbjct: 1   EALRQGGIVAYPTDTVYGLGCDATNEEAVERLREIKGRPRDK 42

This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast. Length = 178

>gnl|CDD|223088 COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 84  ADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
             P       +E  VE L++G V   PTDT+Y +  D  +  A+ERL  IK     K
Sbjct: 6   IHPENPQPRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYEIKQRPSDK 62

Length = 211

>gnl|CDD|232802 TIGR00057, TIGR00057, tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 94  LEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
           +E  V++L++G + V PTDT+Y I  D     A+ RL RIK    +K
Sbjct: 11  IEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSNK 57

Has paralogs, but YrdC called a tRNA modification protein. Ref 2 authors say probably heteromultimeric complex. Paralogs may mean its does the final binding to the tRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 201

>gnl|CDD|183245 PRK11630, PRK11630, hypothetical protein; Provisional

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 16/40 (40%), Positives = 29/40 (72%)

Query: 98  VELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVE 137
           VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ + 
Sbjct: 21  VEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLP 60

Length = 206

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PRK11630	206	hypothetical protein; Provisional	99.89
COG0009	211	SUA5 Putative translation factor (SUA5) [Translati	99.87
TIGR00057	201	Sua5/YciO/YrdC/YwlC family protein. partial match	99.86
PRK10634	190	tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modif	99.85
PF01300	179	Sua5_yciO_yrdC: Telomere recombination; InterPro:	99.8
TIGR00143	711	hypF [NiFe] hydrogenase maturation protein HypF. A	99.62
COG0068	750	HypF Hydrogenase maturation factor [Posttranslatio	98.7
KOG3051	261	consensus RNA binding/translational regulation pro	98.39
KOG3051	261	consensus RNA binding/translational regulation pro	89.03

>PRK11630 hypothetical protein; Provisional

Probab=99.89  E-value=2.4e-23  Score=170.30  Aligned_cols=80  Identities=23%  Similarity=0.407  Sum_probs=74.6

Q ss_pred             ceEEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHHH
Q 031347           78 GLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRL  157 (161)
Q Consensus        78 ~~~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~l  157 (161)
                      |++++++++++++.+.+++++++|++||+|+|||||+|||+|++.|++|++|||++|+|+.+|||+++|+|+++++.|.-
T Consensus         1 m~~~~~~~~~~~~~~~i~~a~~~L~~G~vi~~PTdTvYgL~~d~~n~~Av~~l~~lK~R~~~Kpl~ll~~~~~~~~~~~~   80 (206)
T PRK11630          1 MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF   80 (206)
T ss_pred             CCceEecCCCCCCHHHHHHHHHHHHCCCEEEEeCCChHhhhcCCCCHHHHHHHHHHcCCCCCCCeEEEECCHHHHHHHhc
Confidence            34577889988888889999999999999999999999999999999999999999999999999999999999987753

>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=5.5e-22  Score=164.49  Aligned_cols=77  Identities=26%  Similarity=0.355  Sum_probs=72.4

Q ss_pred             EEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347           80 MYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR  156 (161)
Q Consensus        80 ~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~  156 (161)
                      +++.+++.++....+++|++.|++||+|+|||||||||||++.|++|++|||++|+|+.+|||+++|+|+++++.|.
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~l~~G~vVa~PTeTVYGLg~~~~~~~Av~~i~~~K~Rp~~kpLil~~~~~~~l~~~~   78 (211)
T COG0009           2 QIFMIHPENPQPRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYEIKQRPSDKPLILHVASLEQLKEYA   78 (211)
T ss_pred             ceeecCccccchHHHHHHHHHHHcCCEEEEEccchheeecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHh
Confidence            46778888887888999999999999999999999999999999999999999999999999999999999998665

>TIGR00057 Sua5/YciO/YrdC/YwlC family protein

Probab=99.86  E-value=3.5e-22  Score=162.35  Aligned_cols=73  Identities=29%  Similarity=0.412  Sum_probs=69.0

Q ss_pred             eCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347           84 ADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR  156 (161)
Q Consensus        84 v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~  156 (161)
                      +++++++.+.+++++++|++||||++||||+|||+|+++|++|++|||++|+|+.+|||++||+|+++++.|.
T Consensus         1 ~~~~~~~~~~i~~a~~~L~~G~ii~~PTdTvYgL~~~~~~~~av~ri~~iK~R~~~Kpl~~l~~~~~~l~~~~   73 (201)
T TIGR00057         1 IHPENPSQRGIEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSNKPLTVLVSDLSEIEKYA   73 (201)
T ss_pred             CCcCCCCHHHHHHHHHHHHCCCEEEEeCCCHHHhhcCCCCHHHHHHHHHHhCCCCCCCeEEEECCHHHHHHHh
Confidence            4677888888999999999999999999999999999999999999999999999999999999999998764

partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734.

>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional

Probab=99.85  E-value=2.1e-21  Score=157.14  Aligned_cols=68  Identities=21%  Similarity=0.300  Sum_probs=64.6

Q ss_pred             CChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347           89 ADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR  156 (161)
Q Consensus        89 p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~  156 (161)
                      ++.+.+++++++|++||||+|||||+|||+|++.|++|++|||++|+|+.+|||++||+|++++..|.
T Consensus         5 ~~~~~i~~a~~~L~~G~vv~~PTdTvYgL~~~~~n~~Av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~   72 (190)
T PRK10634          5 LQGDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYI   72 (190)
T ss_pred             ccHHHHHHHHHHHHCCCEEEEeCCchhhhhcCCCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999998775

>PF01300 Sua5_yciO_yrdC: Telomere recombination; InterPro: IPR006070 The YrdC family of hypothetical proteins are widely distributed in eukaryotes and prokaryotes and occur as: (i) independent proteins, (ii) with C-terminal extensions, and (iii) as domains in larger proteins, some of which are implicated in regulation []

Probab=99.80  E-value=8.1e-20  Score=145.15  Aligned_cols=58  Identities=31%  Similarity=0.453  Sum_probs=52.0

Q ss_pred             HHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347           99 ELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR  156 (161)
Q Consensus        99 e~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~  156 (161)
                      |+|++||+|++||||+|||+|+++|++|++|||++|+|+.+|||+++|+|+++++.|.
T Consensus         1 e~Lk~G~vvi~PTdT~ygl~~~~~n~~av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~   58 (179)
T PF01300_consen    1 EILKAGGVVIYPTDTVYGLGCDAFNPEAVERIYKIKQRPKNKPLILLVSSIEQLEEYV   58 (179)
T ss_dssp             -HHHTT-EEEEEESSSEEEEEETTSHHHHHHHHHHHTSSTTS--EEEESSHHHHHHHE
T ss_pred             CccccCCEEEEECCCEEEEEEecCCHHHHHHHHHhhcccCCCCEEEEECCHHHHHHHh
Confidence            5799999999999999999999999999999999999999999999999999997654

The YrdC protein, which consists solely of this domain, forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands []. YrdC from Escherichia coli preferentially binds to double-stranded RNA and DNA. YrdC is predicted to be an rRNA maturation factor, as deletions in its gene lead to immature ribosomal 30S subunits and, consequently, fewer translating ribosomes []. Therefore, YrdC may function by keeping an rRNA structure needed for proper processing of 16S rRNA, especially at lower temperatures. Sua5 is an example of a multi-domain protein that contains an N-terminal YrdC-like domain and a C-terminal Sua5 domain. Sua5 was identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a translation initiation defect in the cytochrome c gene and is required for normal growth in yeast; however its exact function remains unknown []. HypF is involved in the synthesis of the active site of [NiFe]-hydrogenases [].; PDB: 3L7V_A 1KK9_A 1K7J_A 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A 2EQA_A ....

>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF

Probab=99.62  E-value=2.6e-15  Score=142.30  Aligned_cols=67  Identities=24%  Similarity=0.207  Sum_probs=62.8

Q ss_pred             hhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHHHh
Q 031347           91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRLM  158 (161)
Q Consensus        91 ~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~lm  158 (161)
                      .+.+++++++|++|+||++||||+|||+||++|++||+|||++|+|+ +|||+||++|++++++|..+
T Consensus       162 ~~~i~~aa~~L~~G~IVaipt~ggy~L~cda~n~~AV~rLr~~K~Rp-~KPlavmv~d~~~~~~~~~~  228 (711)
T TIGR00143       162 DDALLEAAKLLKKGKIIAIKGIGGFHLACDARNDEVVERLRLRKNRP-LKPFAVMSPDLESAEQHAEL  228 (711)
T ss_pred             hHHHHHHHHHHhCCCEEEEEcCCcceeecCCCCHHHHHHHHHHhCCC-CCCEEEEECCHHHHHHHhcC
Confidence            46799999999999999999999999999999999999999999997 69999999999999877643

A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.

>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=5.8e-08  Score=92.89  Aligned_cols=67  Identities=19%  Similarity=0.258  Sum_probs=62.9

Q ss_pred             hhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHHHhh
Q 031347           92 WKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRLMQ  159 (161)
Q Consensus        92 ~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~lmk  159 (161)
                      +.+.++++.|+.|+||++..-.+|+|+||+.|+++|++|+.-|+|| .|||+||+.|++.++.|+...
T Consensus       198 ~ai~~a~klL~~G~IvAIKGiGGFhLaCda~~~eaV~~LR~rk~Rp-~KPFAvM~kdl~~i~~~a~~~  264 (750)
T COG0068         198 EAIRKAAKLLKVGKIVAIKGIGGFHLACDARNEEAVAKLRKRKNRP-LKPFAVMAKDLETIEEFAEVN  264 (750)
T ss_pred             HHHHHHHHHHhhCCEEEEeecCceeeeecCCchHHHHHHHHhcCCC-CCCceeeeccHHHHHHhhccC
Confidence            3789999999999999999999999999999999999999999995 899999999999999887653

>KOG3051 consensus RNA binding/translational regulation protein of the SUA5 family [Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=1.1e-07  Score=81.79  Aligned_cols=63  Identities=14%  Similarity=0.149  Sum_probs=56.2

Q ss_pred             hhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHH
Q 031347           92 WKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFII  154 (161)
Q Consensus        92 ~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~  154 (161)
                      ..++.+.-+-+.++.|++||||+||+++...++.++.+||.+|+|+.++|+++.++++.++.+
T Consensus        17 ~~~~aa~~~r~~~~~va~pT~t~yg~g~~~~~~~av~~v~~~K~rP~~~pL~~~~~s~~~~~~   79 (261)
T KOG3051|consen   17 ALYDAALIVRRTDKRVAFPTETVYGLGASAYNEVAVLRLYKLKNRPADNPLIVHVSSVDQLKR   79 (261)
T ss_pred             hhhhhhhheeccCCceecCchhhhhhhhhhhccccchhhhhhhcCccccchhhccccHHHHHH
Confidence            344555556689999999999999999999999999999999999999999999999998863

>KOG3051 consensus RNA binding/translational regulation protein of the SUA5 family [Translation, ribosomal structure and biogenesis]

Probab=89.03  E-value=0.053  Score=47.16  Aligned_cols=93  Identities=18%  Similarity=0.093  Sum_probs=74.4

Q ss_pred             CceeeeeeeeccCccccccCCccccccCceEEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHH
Q 031347           50 SRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIER  129 (161)
Q Consensus        50 ~~~~~~~~~~kr~~krLky~~~~f~k~~~~~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVer  129 (161)
                      +++..++.+.++.+++++|.++.|.+.....+...++..-..+....+.+.|..+-.-+.+++++|..        ++.+
T Consensus        16 ~~~~~aa~~~r~~~~~va~pT~t~yg~g~~~~~~~av~~v~~~K~rP~~~pL~~~~~s~~~~~~v~~~--------~i~~   87 (261)
T KOG3051|consen   16 PALYDAALIVRRTDKRVAFPTETVYGLGASAYNEVAVLRLYKLKNRPADNPLIVHVSSVDQLKRVVAI--------NIPS   87 (261)
T ss_pred             hhhhhhhhheeccCCceecCchhhhhhhhhhhccccchhhhhhhcCccccchhhccccHHHHHHHHhh--------cchh
Confidence            66778999999999999999999998887777777777777777778888888888888899998877        2777


Q ss_pred             HHH--HhCCCCCCCcEEEeCCHHH
Q 031347          130 LRR--IKNVEPSKVRKIASHIFSI  151 (161)
Q Consensus       130 Ly~--iK~R~~~KPL~lLv~sl~~  151 (161)
                      +|.  +|.-=+. |+.+|....++
T Consensus        88 ~~~~L~~~l~PG-Pltlll~~~~~  110 (261)
T KOG3051|consen   88 LYLPLASYLWPG-PLTLLLERADE  110 (261)
T ss_pred             hhhHHHhhcCCC-ceEEEeecchh
Confidence            777  7765333 78877766553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
1k7j_A	206	Protein YCIO, protein TF1; structural genomics, X-	1e-11
1jcu_A	208	Conserved protein MTH1692; mixed alpha-beta struct	5e-05

>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A Length = 206

 Score = 59.0 bits (144), Expect = 1e-11
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 81  YVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
           +    P       +   VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ + P  
Sbjct: 4   FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQL-PDG 62

>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1 Length = 208

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 80  MYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
           +  +          LE  + +++ G + + PTDT+Y +  +     A+ RL R+K 
Sbjct: 2   LIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKG 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
1k7j_A	206	Protein YCIO, protein TF1; structural genomics, X-	99.89
2eqa_A	352	Hypothetical protein ST1526; YRDC/RIBB fold, YRDC	99.86
1jcu_A	208	Conserved protein MTH1692; mixed alpha-beta struct	99.86
1hru_A	188	YRDC gene product; protein folding, structural gen	99.83
3l7v_A	295	Putative uncharacterized protein SMU.1377C; transc	99.75
3vth_A	761	Hydrogenase maturation factor; carbamoyltransfer,	99.66
3ttc_A	657	HYPF, transcriptional regulatory protein; Zn finge	99.6
4g9i_A	772	Hydrogenase maturation protein HYPF; zinc finger,	99.54

>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A

Probab=99.89  E-value=3.8e-23  Score=167.35  Aligned_cols=78  Identities=23%  Similarity=0.423  Sum_probs=74.4

Q ss_pred             eEEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347           79 LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR  156 (161)
Q Consensus        79 ~~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~  156 (161)
                      .+++++++++++.+.+++++++|++||||+|||||+|||+||++|++|++|||++|+|+.+|||+++|+|+++++.|.
T Consensus         2 ~~~~~~~~~~~~~~~i~~a~~~L~~G~iva~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~   79 (206)
T 1k7j_A            2 SQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYS   79 (206)
T ss_dssp             CEEEECCSSSCCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHB
T ss_pred             CceEecCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHh
Confidence            468899999999999999999999999999999999999999999999999999999999999999999999997653

>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*

Probab=99.86  E-value=4.6e-22  Score=173.85  Aligned_cols=78  Identities=15%  Similarity=0.212  Sum_probs=74.8

Q ss_pred             eEEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347           79 LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR  156 (161)
Q Consensus        79 ~~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~  156 (161)
                      ++++++++++++.+.+++++++|++||+|+|||||+|||+||++|++|++|||++|+|+.+|||+++|+|++++..|.
T Consensus         2 t~~~~i~~~~~~~~~i~~aa~~L~~G~iVa~PTeTvYGLg~da~n~~AV~rI~~~K~Rp~~kPliv~v~d~~~l~~~~   79 (352)
T 2eqa_A            2 TQIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVA   79 (352)
T ss_dssp             CEEEECCSSSCCHHHHHHHHHHHHTTCCEEECCSSSCEEEEETTCHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHE
T ss_pred             CeEEEeCCCCCCHHHHHHHHHHHHcCCEEEEECCCEeEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999999999999998664

>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1

Probab=99.86  E-value=6.6e-23  Score=166.38  Aligned_cols=77  Identities=21%  Similarity=0.338  Sum_probs=72.0

Q ss_pred             eEEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHH
Q 031347           79 LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIW  155 (161)
Q Consensus        79 ~~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~  155 (161)
                      |+++++++++++.+.+++++++|++||||+|||||+|||+||++|++|++|||++|+|+.+|||+++|+|+++++.|
T Consensus         1 ~~~~~~~~~~~~~~~i~~a~~~L~~G~vVa~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~v~~~~~~~~~   77 (208)
T 1jcu_A            1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRF   77 (208)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTT
T ss_pred             CeEEEecCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHH
Confidence            34667899999999999999999999999999999999999999999999999999999999999999999998543

>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1

Probab=99.83  E-value=1.7e-21  Score=155.31  Aligned_cols=71  Identities=18%  Similarity=0.285  Sum_probs=65.7

Q ss_pred             CCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347           86 PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR  156 (161)
Q Consensus        86 p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~  156 (161)
                      +++++.+.+++++++|++||||+|||||+|||+||++|++|++|||++|+|+.+|||+++|+|+++++.|.
T Consensus         2 ~~~~~~~~i~~a~~~L~~G~iva~ptdt~ygL~~da~~~~av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~   72 (188)
T 1hru_A            2 NNNLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYI   72 (188)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEeCCCEeeeEEcCCCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999997663

>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans}

Probab=99.75  E-value=2e-18  Score=148.15  Aligned_cols=63  Identities=22%  Similarity=0.192  Sum_probs=59.2

Q ss_pred             hhHHHHHHHHh-cCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347           92 WKLEPVVELLK-EGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR  156 (161)
Q Consensus        92 ~~l~~aae~L~-~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~  156 (161)
                      +.+++|+++|+ +||||+|||||+|||+|  +|++||+|||++|+|+.+|||+|||+|+++++.|.
T Consensus        44 ~~i~~Aa~~L~~~GgIVa~PTdTvYGL~c--~n~~AV~rL~~iK~Rp~~KPl~vmv~dl~~l~~~~  107 (295)
T 3l7v_A           44 NLSQEGFEIVKGEGGVIVCPTKVGYIIMT--SDKKGLERKFEAKKRNRNKPGVVLCGSMEELRALA  107 (295)
T ss_dssp             SCCHHHHHHHHSTTCEEEEEETTEEEEEE--SSHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHB
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCEEEEEE--cCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHh
Confidence            34789999999 99999999999999999  89999999999999999999999999999997653

>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A

Probab=99.66  E-value=1.8e-16  Score=149.64  Aligned_cols=66  Identities=18%  Similarity=0.106  Sum_probs=62.2

Q ss_pred             ChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347           90 DSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR  156 (161)
Q Consensus        90 ~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~  156 (161)
                      +.+.|++++++|++||||++||||+|||+||++|++||+|||++|+|+ +|||+||++|+++++.|.
T Consensus       201 ~~~~i~~aa~~L~~G~IVa~pt~t~YgL~cda~n~~AV~rL~~~K~Rp-~KPl~vmv~dl~~l~~~~  266 (761)
T 3vth_A          201 FDDEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRY-GKPFAVMMRDVEEVKKYC  266 (761)
T ss_dssp             CSCHHHHHHHHHHTTCCEEEECSSSEEEECBTTCHHHHHHHHHHHTCC-SSCCCEECSSHHHHHHHB
T ss_pred             chHHHHHHHHHHHcCCEEEEECCcEEEEEecCCCHHHHHHHHHHhCCC-CCCeEEEeCCHHHHHHHc
Confidence            456799999999999999999999999999999999999999999999 999999999999997653

>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A

Probab=99.60  E-value=6.9e-16  Score=143.85  Aligned_cols=68  Identities=19%  Similarity=0.250  Sum_probs=61.3

Q ss_pred             hhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHH--HHHHHhh
Q 031347           91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIF--IIWRLMQ  159 (161)
Q Consensus        91 ~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l--~~~~lmk  159 (161)
                      .+.+++++++|++||||++||||+|||+||++|++||+|||++|+|+ +|||+|||+|++++  ..+++|+
T Consensus       111 ~~~i~~aa~~L~~G~IVa~pt~ggYgL~cda~n~~AV~rL~~~K~Rp-~KPlavm~~dl~~v~~~~~~ll~  180 (657)
T 3ttc_A          111 EAALQAAIAQLKMGNIVAIKGIGGFHLACDARNSNAVATLRARKHRP-AKPLAVMLPVADGLPDAARQLLT  180 (657)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSSEEEEEETTCHHHHHHHHHHTTCS-SSCCCEECSCCTTSCHHHHHHHT
T ss_pred             hHHHHHHHHHHHcCCEEEEECCceeEEEeecCCHHHHHHHHHHhCCC-CCCEEEEECChHHCCHHHHHHHh
Confidence            45789999999999999999999999999999999999999999998 89999999998866  2445554

>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}

Probab=99.54  E-value=1.1e-14  Score=137.35  Aligned_cols=66  Identities=18%  Similarity=0.172  Sum_probs=62.1

Q ss_pred             hhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHHH
Q 031347           91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRL  157 (161)
Q Consensus        91 ~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~l  157 (161)
                      .+.|++++++|++|+||++||+|+|||+||++|++||+||++.|+|+ +|||+||++|+++++.|..
T Consensus       200 ~~~i~~a~~~l~~G~iva~kg~ggy~L~cda~n~~aV~~lr~~K~Rp-~kP~avm~~d~~~~~~~~~  265 (772)
T 4g9i_A          200 GDPLRKAAELIDKGYIVAIKGIGGIHLACDAANEEVVAELRRRTFRP-QKPFAIMAKDIETVKSFAY  265 (772)
T ss_dssp             THHHHHHHHHHTTSCCEEECCSSSBEEECCTTCHHHHHHHHHHTTCS-SSCCEEECSSHHHHHHHSC
T ss_pred             hHHHHHHHHHHHcCCEEEEecCCeeEEEEecCCHHHHHHHHHhhCCC-CCCcEEEeCCHHHHHHHhc
Confidence            46799999999999999999999999999999999999999999997 7999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	161
d1k7ja_	206	d.115.1.1 (A:) Hypothetical protein YciO {Escheric	4e-10
d1jcua_	208	d.115.1.1 (A:) Hypothetical protein MTH1692 {Archa	2e-08
d1hrua_	186	d.115.1.1 (A:) Hypothetical protein YrdC {Escheric	2e-07

>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli [TaxId: 562]} Length = 206

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein YciO
species: Escherichia coli [TaxId: 562]

 Score = 54.1 bits (129), Expect = 4e-10
 Identities = 18/79 (22%), Positives = 36/79 (45%)

Query: 81  YVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
           +    P       +   VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ +    
Sbjct: 4   FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGH 63

Query: 141 VRKIASHIFSIFIIWRLMQ 159
              +     S    +  + 
Sbjct: 64  NFTLMCRDLSELSTYSFVD 82

>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 208

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein MTH1692
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 79  LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEP 138
           ++  +          LE  + +++ G + + PTDT+Y +  +     A+ RL R+K   P
Sbjct: 1   MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSP 60

>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein YrdC
species: Escherichia coli [TaxId: 562]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 94  LEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
           +   +++L E  V   PT+ ++ + CD  S +A+ RL  +K 
Sbjct: 8   IAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQ 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1k7ja_	206	Hypothetical protein YciO {Escherichia coli [TaxId	99.91
d1jcua_	208	Hypothetical protein MTH1692 {Archaeon Methanobact	99.87
d1hrua_	186	Hypothetical protein YrdC {Escherichia coli [TaxId	99.84

>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein YciO
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.3e-24  Score=173.14  Aligned_cols=79  Identities=23%  Similarity=0.403  Sum_probs=75.5

Q ss_pred             ceEEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347           78 GLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR  156 (161)
Q Consensus        78 ~~~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~  156 (161)
                      |.+++++||++||.+.+++|+++|++||||++||||+|||+|+++|++|++|||++|+|+.+|||+++++|++++..|.
T Consensus         1 M~~~~~~~~~~p~~~~i~~a~~~L~~G~vv~~PTdTvYgl~~da~~~~av~~i~~iK~R~~~kpl~vlv~~~~~~~~~~   79 (206)
T d1k7ja_           1 MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYS   79 (206)
T ss_dssp             CCEEEECCSSSCCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHB
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHHHcCCEEEEECCceeEEEEeCCChHHHHHHHHhhccccccccccccCCHHHHHHHh
Confidence            4578999999999999999999999999999999999999999999999999999999999999999999999997653

>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein MTH1692
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=1.1e-23  Score=167.99  Aligned_cols=75  Identities=21%  Similarity=0.342  Sum_probs=72.1

Q ss_pred             eEEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHH
Q 031347           79 LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFI  153 (161)
Q Consensus        79 ~~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~  153 (161)
                      |++.+++++|++++.+++|+++|++||||++||||+|||+|+++|++|++|||++|+|+.+|||++++++++++.
T Consensus         1 m~i~~i~~~n~~~~~i~~a~~~L~~Ggivi~PTdtvYgl~c~a~~~~av~~i~~lK~R~~~kp~~vl~~~~~~~~   75 (208)
T d1jcua_           1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIP   75 (208)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTST
T ss_pred             CEEEEcCCCCcCHHHHHHHHHHHHcCCEEEEEcCceeeeEEeCCCcHHHHHHHHhhccccccchheecchhhhhh
Confidence            457789999999999999999999999999999999999999999999999999999999999999999999985

>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein YrdC
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.7e-22  Score=155.08  Aligned_cols=68  Identities=19%  Similarity=0.309  Sum_probs=63.8

Q ss_pred             CCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHH
Q 031347           88 GADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIW  155 (161)
Q Consensus        88 ~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~  155 (161)
                      |.+.+.|++|+++|++||||++||||+|||+|+++|++|++|||++|+|+.+|||+++++|++++..|
T Consensus         2 n~~~d~i~~a~~~L~~G~iv~~PTdt~Ygl~~~~~~~~av~~i~~~K~R~~~kp~~vlv~~~~~~~~~   69 (186)
T d1hrua_           2 NLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPY   69 (186)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHcCCEEEEECCceeEEEEeCCChHHHHHHHHhhhhccccccceeeehhhhhhhh
Confidence            45678899999999999999999999999999999999999999999999999999999999998643