Citrus Sinensis ID: 031437

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTADQ
Secondary Structure (PSIPRED)
ccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccEEcccccEEccccccccccccc
Coil and Loop (DISEMBL)
mdpselrylededtpmmktikgatfglvSGTIFGTVvatwqdvprverrVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRdfvngavgGFVAGATVLGYKGKSISSAISAGAALAVTSSLidaggqttridngkeyypyttkkrstadq
Flexible Loop (DISEMBL)
mdpselrylededtPMMKTIKGATFGLVSGTIFGTVvatwqdvprverrVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLidaggqttridngkeyypyttkkrstadq
Low Complexity Region (SEG)
MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNgavggfvagatvlgYkgksissaisagaaLAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTADQ
Disordered region (IsUnstruct)
*****************KTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQTTRIDNGKEYY************
Disordered Region (DISOPRED)
**********DEDTPMMKTIKGATFGLVSGTIFGTVVATW****************RTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQTTRIDNGK*Y*************
Disordered Region (DISEMBL)
MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQTTRIDNGKEYYPYT*********
Disordered Region (DISPRO)
****ELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQTTRIDNGKEYYPYTTK*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooohhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTADQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
O48528	159	Outer envelope pore prote	yes	no	1.0	1.0	0.742	6e-68
P0CR88	187	Mitochondrial import inne	yes	no	0.742	0.631	0.315	0.0002
P0CR89	187	Mitochondrial import inne	N/A	no	0.742	0.631	0.315	0.0002

>sp|O48528|OP163_ARATH Outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OEP163 PE=1 SV=1

 Score =  256 bits (653), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 144/159 (90%)

Query: 1   MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
           MDP+E+RYLE+ED P+MKTIKG+  G  +GTI+GT++ATW+DVPRVER VALPGLIRTLK
Sbjct: 1   MDPAEMRYLEEEDGPLMKTIKGSITGFGAGTIYGTILATWKDVPRVERNVALPGLIRTLK 60

Query: 61  MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISA 120
           MMG +G+TFAAIGGVYIGVEQLVQ++R KRDF NGA+GGFVAGA+VLGY+ +SI +AI+A
Sbjct: 61  MMGTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAGASVLGYRARSIPTAIAA 120

Query: 121 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTADQ 159
           GA LAVTS+LID+GGQTTR+DNG+EYYPYT +KR+ AD 
Sbjct: 121 GATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEADS 159

Voltage-dependent high-conductance channel with a slightly cation-selectivity; selective for amino acids but excludes triosephosphates or uncharged sugars.
Arabidopsis thaliana (taxid: 3702)

>sp|P0CR88|TIM22_CRYNJ Mitochondrial import inner membrane translocase subunit TIM22 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TIM22 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 12/130 (9%)

Query: 12  EDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKM---------M 62
           E  P+  TI G   GL  G  F  + AT+     + R        R   M         M
Sbjct: 50  ESCPLKVTIAGVG-GLAIGGFFSLMSATFAYEDPLSRASNKLTTTRAQTMFVFKEMGRNM 108

Query: 63  GNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGA 122
            + G  FA +G VY GVE  ++ YR K D  NG   GF+ GA +    G   ++ +  G 
Sbjct: 109 WSSGRGFAKVGMVYSGVECCIEGYRAKNDIYNGVSAGFLTGAILARNAGP--TAMLGGGV 166

Query: 123 ALAVTSSLID 132
           A A  S  ID
Sbjct: 167 AFAAFSGAID 176

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CR89|TIM22_CRYNB Mitochondrial import inner membrane translocase subunit TIM22 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=TIM22 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 12/130 (9%)

Query: 12  EDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKM---------M 62
           E  P+  TI G   GL  G  F  + AT+     + R        R   M         M
Sbjct: 50  ESCPLKVTIAGVG-GLAIGGFFSLMSATFAYEDPLSRASNKLTTTRAQTMFVFKEMGRNM 108

Query: 63  GNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGA 122
            + G  FA +G VY GVE  ++ YR K D  NG   GF+ GA +    G   ++ +  G 
Sbjct: 109 WSSGRGFAKVGMVYSGVECCIEGYRAKNDIYNGVSAGFLTGAILARNAGP--TAMLGGGV 166

Query: 123 ALAVTSSLID 132
           A A  S  ID
Sbjct: 167 AFAAFSGAID 176

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
255583146	159	protein translocase, putative [Ricinus c	0.993	0.993	0.841	8e-75
449437597	158	PREDICTED: outer envelope pore protein 1	0.974	0.981	0.858	3e-72
224120422	159	predicted protein [Populus trichocarpa]	0.993	0.993	0.829	6e-69
225441395	158	PREDICTED: mitochondrial import inner me	0.993	1.0	0.765	1e-66
297739858	189	unnamed protein product [Vitis vinifera]	0.993	0.835	0.765	1e-66
147862672	158	hypothetical protein VITISV_009156 [Viti	0.993	1.0	0.759	2e-66
79324885	173	Tim17 domain-containing protein [Arabido	1.0	0.919	0.742	2e-66
18405910	159	Tim17 domain-containing protein [Arabido	1.0	1.0	0.742	3e-66
297824181	173	atoep16-3 [Arabidopsis lyrata subsp. lyr	1.0	0.919	0.742	1e-65
388517875	162	unknown [Lotus japonicus]	0.993	0.975	0.753	6e-64

>gi|255583146|ref|XP_002532339.1| protein translocase, putative [Ricinus communis] gi|223527956|gb|EEF30041.1| protein translocase, putative [Ricinus communis]

 Score =  284 bits (727), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 133/158 (84%), Positives = 150/158 (94%)

Query: 1   MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
           MDPSELRYLED DTP MKTIKGAT GL +GT++GT+VATW DVPRVE+ VALPGLIRT+K
Sbjct: 1   MDPSELRYLEDNDTPTMKTIKGATMGLAAGTLWGTIVATWHDVPRVEKHVALPGLIRTVK 60

Query: 61  MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISA 120
           MMGNYG+TFAAIGGVYIGVEQL+QH+RMKRDFVNG VGGFVAGA+V+G+KG+SIS+A+SA
Sbjct: 61  MMGNYGLTFAAIGGVYIGVEQLIQHFRMKRDFVNGTVGGFVAGASVIGFKGRSISTAMSA 120

Query: 121 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTAD 158
           GAALAVTS+LIDAGGQTTRIDNGKEYYPYTTKKRST +
Sbjct: 121 GAALAVTSALIDAGGQTTRIDNGKEYYPYTTKKRSTVE 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437597|ref|XP_004136578.1| PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449501899|ref|XP_004161489.1| PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  275 bits (704), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 133/155 (85%), Positives = 144/155 (92%)

Query: 1   MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
           MD SE RYLED+DT +MKTIKGAT G VSGTIFGT+VATW DVPRVER VALPGL+RTLK
Sbjct: 1   MDASERRYLEDDDTSLMKTIKGATMGFVSGTIFGTIVATWHDVPRVERNVALPGLVRTLK 60

Query: 61  MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISA 120
           +MGNYGMTFAAIGGVYIGVEQL+Q+YRMKRDFVNGAVGGF AGA+VLGYKGKSIS+A+SA
Sbjct: 61  IMGNYGMTFAAIGGVYIGVEQLLQNYRMKRDFVNGAVGGFTAGASVLGYKGKSISTALSA 120

Query: 121 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRS 155
           GAALA TSS+ID GGQTTRID GKEYYPYTTKKRS
Sbjct: 121 GAALAFTSSVIDIGGQTTRIDTGKEYYPYTTKKRS 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120422|ref|XP_002331044.1| predicted protein [Populus trichocarpa] gi|222872974|gb|EEF10105.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (676), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 131/158 (82%), Positives = 151/158 (95%)

Query: 1   MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
           MDPSE+RYLED+DTPMMKTIKGAT GLVSGTI+GT+VATW DVPRVE+ VALPGLIRT+K
Sbjct: 1   MDPSEMRYLEDDDTPMMKTIKGATMGLVSGTIWGTIVATWHDVPRVEKSVALPGLIRTIK 60

Query: 61  MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISA 120
           MMGN+G+TFAAIGGVYIGVEQLVQHYRMKRDF+NGAVGGFVAG+T+LG+KG++I +AI+A
Sbjct: 61  MMGNHGVTFAAIGGVYIGVEQLVQHYRMKRDFINGAVGGFVAGSTILGFKGRNIKNAIAA 120

Query: 121 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTAD 158
           GAALAVTS++IDAGGQTTR+D GKEYYPYTTKKRS  +
Sbjct: 121 GAALAVTSAIIDAGGQTTRMDTGKEYYPYTTKKRSAVE 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441395|ref|XP_002278395.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM22 [Vitis vinifera]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/158 (76%), Positives = 142/158 (89%)

Query: 1   MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
           MDPSELRYLEDEDT  MK IKGAT GLV GTI+GT+VA+W DVPRVE+ VALPGLIRTLK
Sbjct: 1   MDPSELRYLEDEDTSTMKVIKGATSGLVIGTIWGTIVASWHDVPRVEKHVALPGLIRTLK 60

Query: 61  MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISA 120
           MMG+YGMTFAAIGGVY+GVEQL+++YRMKRD  NGAVGGFVAGAT+LGYKG+SI++A+ A
Sbjct: 61  MMGSYGMTFAAIGGVYMGVEQLLENYRMKRDLYNGAVGGFVAGATILGYKGRSINTAMKA 120

Query: 121 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTAD 158
           GA LA TS+ ID+GG+T R+DNGKEY+ YTTKK+ST +
Sbjct: 121 GATLAATSAFIDSGGRTARVDNGKEYFAYTTKKKSTIE 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739858|emb|CBI30040.3| unnamed protein product [Vitis vinifera]

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/158 (76%), Positives = 142/158 (89%)

Query: 1   MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
           MDPSELRYLEDEDT  MK IKGAT GLV GTI+GT+VA+W DVPRVE+ VALPGLIRTLK
Sbjct: 32  MDPSELRYLEDEDTSTMKVIKGATSGLVIGTIWGTIVASWHDVPRVEKHVALPGLIRTLK 91

Query: 61  MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISA 120
           MMG+YGMTFAAIGGVY+GVEQL+++YRMKRD  NGAVGGFVAGAT+LGYKG+SI++A+ A
Sbjct: 92  MMGSYGMTFAAIGGVYMGVEQLLENYRMKRDLYNGAVGGFVAGATILGYKGRSINTAMKA 151

Query: 121 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTAD 158
           GA LA TS+ ID+GG+T R+DNGKEY+ YTTKK+ST +
Sbjct: 152 GATLAATSAFIDSGGRTARVDNGKEYFAYTTKKKSTIE 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862672|emb|CAN81486.1| hypothetical protein VITISV_009156 [Vitis vinifera]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/158 (75%), Positives = 142/158 (89%)

Query: 1   MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
           MDPSELRYLEDEDT  MK IKGAT GLV GTI+GT+VA+W DVPRVE+ VALPGLIRTLK
Sbjct: 1   MDPSELRYLEDEDTSTMKVIKGATSGLVIGTIWGTIVASWHDVPRVEKHVALPGLIRTLK 60

Query: 61  MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISA 120
           MMG+YGMTFAAJGGVY+GVEQL+++YRMKRD  NGAVGGFVAGAT+LGYKG+SI++A+ A
Sbjct: 61  MMGSYGMTFAAJGGVYMGVEQLLENYRMKRDLYNGAVGGFVAGATILGYKGRSINTAMKA 120

Query: 121 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTAD 158
           GA LA TS+ ID+GG+T R+DNGKEY+ YTTKK+ST +
Sbjct: 121 GATLAATSAFIDSGGRTARVDNGKEYFAYTTKKKSTIE 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324885|ref|NP_001031527.1| Tim17 domain-containing protein [Arabidopsis thaliana] gi|330254993|gb|AEC10087.1| Tim17 domain-containing protein [Arabidopsis thaliana]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 144/159 (90%)

Query: 1   MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
           MDP+E+RYLE+ED P+MKTIKG+  G  +GTI+GT++ATW+DVPRVER VALPGLIRTLK
Sbjct: 15  MDPAEMRYLEEEDGPLMKTIKGSITGFGAGTIYGTILATWKDVPRVERNVALPGLIRTLK 74

Query: 61  MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISA 120
           MMG +G+TFAAIGGVYIGVEQLVQ++R KRDF NGA+GGFVAGA+VLGY+ +SI +AI+A
Sbjct: 75  MMGTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAGASVLGYRARSIPTAIAA 134

Query: 121 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTADQ 159
           GA LAVTS+LID+GGQTTR+DNG+EYYPYT +KR+ AD 
Sbjct: 135 GATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEADS 173

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405910|ref|NP_565968.1| Tim17 domain-containing protein [Arabidopsis thaliana] gi|79324887|ref|NP_001031528.1| Tim17 domain-containing protein [Arabidopsis thaliana] gi|79324889|ref|NP_001031529.1| Tim17 domain-containing protein [Arabidopsis thaliana] gi|75098427|sp|O48528.1|OP163_ARATH RecName: Full=Outer envelope pore protein 16-3, chloroplastic/mitochondrial; AltName: Full=Chloroplastic outer envelope pore protein of 16 kDa 3; Short=AtOEP16-3; Short=OEP16-3; AltName: Full=Mitochondrial complex I subunit B14.7 gi|2673912|gb|AAB88646.1| expressed protein [Arabidopsis thaliana] gi|21555741|gb|AAM63925.1| unknown [Arabidopsis thaliana] gi|88698118|gb|ABD48955.1| At2g42210 [Arabidopsis thaliana] gi|98961103|gb|ABF59035.1| At2g42210 [Arabidopsis thaliana] gi|330254992|gb|AEC10086.1| Tim17 domain-containing protein [Arabidopsis thaliana] gi|330254994|gb|AEC10088.1| Tim17 domain-containing protein [Arabidopsis thaliana] gi|330254995|gb|AEC10089.1| Tim17 domain-containing protein [Arabidopsis thaliana]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 144/159 (90%)

Query: 1   MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
           MDP+E+RYLE+ED P+MKTIKG+  G  +GTI+GT++ATW+DVPRVER VALPGLIRTLK
Sbjct: 1   MDPAEMRYLEEEDGPLMKTIKGSITGFGAGTIYGTILATWKDVPRVERNVALPGLIRTLK 60

Query: 61  MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISA 120
           MMG +G+TFAAIGGVYIGVEQLVQ++R KRDF NGA+GGFVAGA+VLGY+ +SI +AI+A
Sbjct: 61  MMGTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAGASVLGYRARSIPTAIAA 120

Query: 121 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTADQ 159
           GA LAVTS+LID+GGQTTR+DNG+EYYPYT +KR+ AD 
Sbjct: 121 GATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEADS 159

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824181|ref|XP_002879973.1| atoep16-3 [Arabidopsis lyrata subsp. lyrata] gi|297325812|gb|EFH56232.1| atoep16-3 [Arabidopsis lyrata subsp. lyrata]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 143/159 (89%)

Query: 1   MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
           MDP+E+RYLE+ED P+MKTIKG+  G  +GTI+GTV+ATW+DVPRVER VALPGLIRTLK
Sbjct: 15  MDPAEMRYLEEEDGPLMKTIKGSITGFGAGTIYGTVLATWKDVPRVERNVALPGLIRTLK 74

Query: 61  MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISA 120
           MMG +G+TFAAIGGVYIGVEQLVQ++R KRDF NGA+GGFVAGA+VLGY+ +SI +AI+A
Sbjct: 75  MMGTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAGASVLGYRARSIPTAIAA 134

Query: 121 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTADQ 159
           GA LAVTS+LID+GGQTTR+D G+EYYPYT +KR+ AD 
Sbjct: 135 GATLAVTSALIDSGGQTTRVDTGREYYPYTVEKRAEADS 173

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517875|gb|AFK46999.1| unknown [Lotus japonicus]

 Score =  248 bits (633), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 142/158 (89%)

Query: 1   MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
           +DP+ELRYLE++D+ +MKTIKGAT GLV+GTI+GTVVATW DVPRVER VALPGLIRT K
Sbjct: 4   IDPAELRYLENDDSSLMKTIKGATTGLVAGTIWGTVVATWYDVPRVERNVALPGLIRTFK 63

Query: 61  MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISA 120
           MMGN+G+TFAAIGGVYIGVEQLVQ++R KRD VNGAVGGFVAGA +LGYKG+SIS+A+SA
Sbjct: 64  MMGNHGLTFAAIGGVYIGVEQLVQNFRGKRDLVNGAVGGFVAGAAILGYKGRSISTALSA 123

Query: 121 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTAD 158
           G+ALA TS+++D GGQT + D+GKEY  YTTKKR + D
Sbjct: 124 GSALAFTSAVLDFGGQTMKHDDGKEYAAYTTKKRPSPD 161

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2095763	68	AT3G57900 "AT3G57900" [Arabido	0.188	0.441	0.566	1.5e-11

TAIR|locus:2095763 AT3G57900 "AT3G57900" [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query:     1 MDPSELRYLEDEDTPMMKTIKGATFGLVSG 30
             MDP+E+RYLE+E+  MMKT K A  G  +G
Sbjct:     1 MDPTEMRYLEEENGAMMKTFKDAVTGFATG 30

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O48528	OP163_ARATH	No assigned EC number	0.7421	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_1520029	hypothetical protein (159 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00060644	SubName- Full=Putative uncharacterized protein; (72 aa)							•		0.444
	eugene3.00140734	hypothetical protein (131 aa)							•		0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	4e-15

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score = 67.3 bits (165), Expect = 4e-15
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 18  KTIKGATFGLVSGTIFGTVVATWQDVPRVERRVAL-PGLIRTLKMMGNYGM----TFAAI 72
           + +     G + G ++G        +    R   L   L   L   G  G      FA  
Sbjct: 5   RIVYDTGGGFLMGAVYGGFFGAPHGLVNALRSGPLKLRLNGVLNATGRRGPSHGNNFAVF 64

Query: 73  GGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLID 132
           GG+Y G+E  ++  R K D  N  + G + GA VLG +G    +A    A  A  S+ I+
Sbjct: 65  GGLYSGIECALEKLRGKEDPWNSIIAGALTGA-VLGLRG-GPKAAAVGAAVGAAFSAAIE 122

Query: 133 AGGQT 137
             G+ 
Sbjct: 123 GLGKL 127

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
KOG3225	168	consensus Mitochondrial import inner membrane tran	99.97
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	99.94
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.91
PTZ00236	164	mitochondrial import inner membrane translocase su	99.91
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	99.84
KOG1652	183	consensus Mitochondrial import inner membrane tran	99.84
KOG3324	206	consensus Mitochondrial import inner membrane tran	99.46
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.27
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	96.77
KOG4608	270	consensus Uncharacterized conserved protein [Funct	96.34
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	94.94
KOG4096	75	consensus Uncharacterized conserved protein [Funct	93.24
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	90.47
KOG1398	460	consensus Uncharacterized conserved protein [Funct	90.01
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	88.07

>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-32  Score=206.61  Aligned_cols=133  Identities=35%  Similarity=0.540  Sum_probs=120.6

Q ss_pred             CChhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcchhhccchhHH-HHHHhhhhhhhhHHHHHHHHH
Q 031437            1 MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQ---DVPRVERRVALPGL-IRTLKMMGNYGMTFAAIGGVY   76 (159)
Q Consensus         1 ~~~~~~~~~~~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~---~~p~~~~~~~~~~~-~~~~~~~g~~~~~fa~~g~~y   76 (159)
                      +||+|+++++.+++|..|++.+.+.|+++|.++|+|.++|.   ++|+..++..++++ +++.+.+++++++|+++|++|
T Consensus        28 ~~~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvf  107 (168)
T KOG3225|consen   28 GDPTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVF  107 (168)
T ss_pred             CChHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhe
Confidence            58899999999999999999999999999999999999985   56654444445554 677777889999999999999


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcC
Q 031437           77 IGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGG  135 (159)
Q Consensus        77 s~~~c~~~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g  135 (159)
                      +++||.+|++|.|+||.|.+++||++|+. ++.|.| |++++.+|++|++||++||+.-
T Consensus       108 sg~Ec~iE~~RAK~D~~NgaiaG~vtGg~-l~~raG-p~a~~~G~agfa~fS~~id~y~  164 (168)
T KOG3225|consen  108 SGVECLIESFRAKSDWYNGAIAGCVTGGS-LGYRAG-PKAAAIGCAGFAAFSAAIDKYM  164 (168)
T ss_pred             hhHHHHHHHHHhhhchhcceeeeeeeccc-hhhccc-chhhhhchhHHHHHHHHHHHhh
Confidence            99999999999999999999999999998 899998 9999999999999999998863

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=99.94  E-value=1e-25  Score=174.06  Aligned_cols=125  Identities=20%  Similarity=0.283  Sum_probs=104.9

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHhh---hcCcchhhccchhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031437           11 DEDTPMMKTIKGATFGLVSGTIFGTVVATW---QDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYR   87 (159)
Q Consensus        11 ~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~---~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa~~g~~ys~~~c~~~~~R   87 (159)
                      ..|||+.|+++++..++.+|++.|.+.+.+   +|.|..++.  ...++.....-++.+++||++|++|+++||.++++|
T Consensus         5 ~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl--~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R   82 (170)
T TIGR00980         5 TREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKL--VGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIR   82 (170)
T ss_pred             ccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchh--hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            478999999999999999888888877764   677653221  123332323336889999999999999999999999


Q ss_pred             hhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcCCccc
Q 031437           88 MKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQTTR  139 (159)
Q Consensus        88 gk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g~~~~  139 (159)
                      +|||+||++++||+||++ |+++.| +++++.+|+.+|++.++||++|.-+.
T Consensus        83 ~KeD~~NsiiAG~~TGa~-l~~r~G-~~a~~~~aa~gg~~la~ie~~g~~~~  132 (170)
T TIGR00980        83 KKEDPWNSIISGFLTGAA-LAVRGG-PRAMRGSAILGACILAVIEGVGLVLT  132 (170)
T ss_pred             cccchHHHHHHHHHHHHH-HHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999997 999998 89999999999999999999998554

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.91  E-value=1.1e-23  Score=155.03  Aligned_cols=122  Identities=27%  Similarity=0.414  Sum_probs=103.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhccc-hhHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHHHh
Q 031437           14 TPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVA-LPGLIRTLKMMGN----YGMTFAAIGGVYIGVEQLVQHYRM   88 (159)
Q Consensus        14 ~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~-~~~~~~~~~~~g~----~~~~fa~~g~~ys~~~c~~~~~Rg   88 (159)
                      ||+.|++.+++.++.+|+++|.+...++..+...++.. .+.++..++.+++    ++..||.++++|++++|.++++|+
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~   80 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG   80 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            79999999999999999999999998632222112112 2355566666666    999999999999999999999999


Q ss_pred             hcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 031437           89 KRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQT  137 (159)
Q Consensus        89 k~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g~~  137 (159)
                      |||+||++++|+++|++ ++++.+ ++.++.+++.+++++.++++.++.
T Consensus        81 k~D~~N~~~aG~~aGa~-~~~~~g-~~~~~~~~~~~a~~~~~~~~~~~~  127 (128)
T PF02466_consen   81 KDDPWNSAIAGAAAGAV-LGLRSG-PRGMASGAALGAAFAAAVEYYGRM  127 (128)
T ss_pred             ccccchhHHHHHHHHHH-HHhccC-hHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999996 999995 999999999999999999998763

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=99.91  E-value=1.7e-23  Score=160.73  Aligned_cols=123  Identities=22%  Similarity=0.243  Sum_probs=98.6

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHh---hhcCcchhhccchhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031437           11 DEDTPMMKTIKGATFGLVSGTIFGTVVAT---WQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYR   87 (159)
Q Consensus        11 ~~~~c~~k~~~~~~~G~~~G~~~G~~~~~---~~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa~~g~~ys~~~c~~~~~R   87 (159)
                      ..|||+.|++++...++.+|++.|.+...   ++|+|...+ . ...+....+..+..+++||++|++|+++||.++++|
T Consensus         7 ~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~r-l-~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R   84 (164)
T PTZ00236          7 SREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGER-F-SGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLR   84 (164)
T ss_pred             CcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCcch-H-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999888887766665554   478886322 1 122332222346889999999999999999999999


Q ss_pred             hhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 031437           88 MKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQT  137 (159)
Q Consensus        88 gk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g~~  137 (159)
                      +|||+||++++||+||++ |+++.| ++.++.+++..+++.++|+..+.-
T Consensus        85 ~K~D~~Nsi~AG~~TGa~-l~~r~G-~~~~~~~a~~Gg~~~~~ie~~~i~  132 (164)
T PTZ00236         85 GKEDHWNAIASGFFTGGV-LAIRGG-WRSAVRNAIFGGILLGIIELVSIG  132 (164)
T ss_pred             ccCchHHHHHHHHHHHHH-HHHhcC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999997 999998 998888888888888888776653

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=99.84  E-value=1.9e-20  Score=142.23  Aligned_cols=118  Identities=19%  Similarity=0.201  Sum_probs=95.2

Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhccchhHHHHHHhhh----hhhhhHHHHHHHHHHHHHHHH
Q 031437            8 YLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMM----GNYGMTFAAIGGVYIGVEQLV   83 (159)
Q Consensus         8 ~~~~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~----g~~~~~fa~~g~~ys~~~c~~   83 (159)
                      .....|+...++..+++.|.++|.++|++.+. ++.|....  ....+++.++++    .+.+.+||+++.+|+++||.+
T Consensus        27 ~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~-~~~~~~~~--~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i  103 (149)
T TIGR00983        27 SRGWFEDLCFGTGTCYLTGLAIGALNGLRLGL-KETQSMPW--TKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSII  103 (149)
T ss_pred             CCChhhhhhhhHhHHHHHHHHHHHHHHHHHHH-hhCCCCCc--HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34456788899999999999999999999998 55553211  011333333333    367899999999999999999


Q ss_pred             HHHHhhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHH
Q 031437           84 QHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSL  130 (159)
Q Consensus        84 ~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~  130 (159)
                      +++|+|||+||++++||+||++ +.++.| +++++.+|+.-++++++
T Consensus       104 ~~~R~k~D~~Nsv~AGa~TGal-~~~~~G-~r~~~~g~~~G~~l~~~  148 (149)
T TIGR00983       104 EATRGKHDDFNSVAAGALTGAL-YKSTRG-LRGMARSGALGATAAGV  148 (149)
T ss_pred             HHHhccchhhHhHHHHHHHHHH-HHhccC-hHHHHHHhHHHHHHhhc
Confidence            9999999999999999999997 999998 99999988888777654

>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=2.9e-22  Score=154.34  Aligned_cols=128  Identities=20%  Similarity=0.249  Sum_probs=105.0

Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh---hcCcchhhccchhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031437            9 LEDEDTPMMKTIKGATFGLVSGTIFGTVVATW---QDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQH   85 (159)
Q Consensus         9 ~~~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~---~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa~~g~~ys~~~c~~~~   85 (159)
                      +.-.++|+.+.+++....+.+|.+-|.+...+   +|+|...+..  ..+.......+..+++||++|++||.++|.+..
T Consensus         3 e~sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~r~~--gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~   80 (183)
T KOG1652|consen    3 EYSREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGARLV--GGISAVKMRAPQSGGSFAVWGGLFSTVDCALVA   80 (183)
T ss_pred             cccCCCCCceeeccccchhhhcccccceeeeeeeeecCCcccccc--cchhhhhccCcccccceeeeechhhHHHHHHHH
Confidence            34568888888888888888888877766654   7888744322  122222223478899999999999999999999


Q ss_pred             HHhhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcCCcccc
Q 031437           86 YRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQTTRI  140 (159)
Q Consensus        86 ~Rgk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g~~~~~  140 (159)
                      +|+|+|+||++++||+||++ |+.|.+ +++++.+|+.++++.+++|-+|.....
T Consensus        81 ~R~KeDpwNsivsGa~TGg~-La~r~g-~~a~~~sa~~~g~~lamieg~g~~~t~  133 (183)
T KOG1652|consen   81 IRKKEDPWNSIVSGAATGGL-LAARGG-PKAMLTSAITGGLLLAMIEGLGIQVTK  133 (183)
T ss_pred             HhcccchHHHHHHHhhccce-eecccc-HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            99999999999999999997 899997 999999999999999999999885553

>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=2e-13  Score=106.87  Aligned_cols=115  Identities=19%  Similarity=0.183  Sum_probs=89.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhccchhHHHHHHhhhh----hhhhHHHHHHHHHHHHHHHHHHHH
Q 031437           12 EDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMG----NYGMTFAAIGGVYIGVEQLVQHYR   87 (159)
Q Consensus        12 ~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~g----~~~~~fa~~g~~ys~~~c~~~~~R   87 (159)
                      .|+...-+...++.|.++|++.|+..+. .+.+...  ...+.+.+.+++..    ..+...++++.+|+++|..++..|
T Consensus        74 ~E~l~f~tG~~yl~G~~iGa~~G~~~Gl-k~~e~~~--~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R  150 (206)
T KOG3324|consen   74 FENLTFGTGWAYLTGSAIGAFNGLILGL-KNTENGA--SGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATR  150 (206)
T ss_pred             hhhhheeccchhccchhhhhHHHHHHhh-hcCCCCC--ccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhh
Confidence            4677778888999999999999998776 4443311  12345666666554    456778899999999999999999


Q ss_pred             hhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHH
Q 031437           88 MKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLI  131 (159)
Q Consensus        88 gk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~  131 (159)
                      +|||++|++.+|+.||++ +.+..| ++++..+++.-+...+++
T Consensus       151 ~~dd~lnsv~AGalTGal-yrs~~G-lr~~av~ga~g~~aa~aw  192 (206)
T KOG3324|consen  151 GKDDDLNSVAAGALTGAL-YRSTRG-LRAAAVAGAVGGTAAAAW  192 (206)
T ss_pred             ccccchhhhhhhhhhhhh-hhcCCC-chHHHHHHHHHHHHHHHH
Confidence            999999999999999986 888887 777777666665555554

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=2.5e-13  Score=105.54  Aligned_cols=126  Identities=19%  Similarity=0.188  Sum_probs=99.7

Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh-hcCcc---hhhcc--------------c-hhHHHHHHhhhh----h
Q 031437            8 YLEDEDTPMMKTIKGATFGLVSGTIFGTVVATW-QDVPR---VERRV--------------A-LPGLIRTLKMMG----N   64 (159)
Q Consensus         8 ~~~~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~-~~~p~---~~~~~--------------~-~~~~~~~~~~~g----~   64 (159)
                      +..+...|+.+.+.+.+.|..+|...+.+.+++ |..+.   ...+.              + ..+++...+.++    .
T Consensus        39 ~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~f  118 (191)
T COG5596          39 MKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFF  118 (191)
T ss_pred             ccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHHHhhccccccccccc
Confidence            445667899999999999999999999988885 22211   01010              0 012333333343    5


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcC
Q 031437           65 YGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGG  135 (159)
Q Consensus        65 ~~~~fa~~g~~ys~~~c~~~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g  135 (159)
                      ++++|++.|..|.+.+|.++.+|+|||+.|++.+|+.+|+. +..+.+ ++++..+.++|+++++.++..-
T Consensus       119 tG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~-~~~~~g-~qa~~~~~a~~aa~s~~~~~~~  187 (191)
T COG5596         119 TGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAA-LASSAG-PQAMPMGGAGFAAFSAGITLAM  187 (191)
T ss_pred             cccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHH-HHhhcc-ccccccCccchhhhhhhHHhhh
Confidence            79999999999999999999999999999999999999997 888887 9999999999999999987653

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.00015  Score=56.90  Aligned_cols=106  Identities=15%  Similarity=0.190  Sum_probs=76.0

Q ss_pred             hhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh---hcCcchhhccchhHHHHHHhhhhhhhhHHH-HHHHHHHHH
Q 031437            4 SELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATW---QDVPRVERRVALPGLIRTLKMMGNYGMTFA-AIGGVYIGV   79 (159)
Q Consensus         4 ~~~~~~~~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~---~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa-~~g~~ys~~   79 (159)
                      .++..-+..++|....+..+..++-++.+...+...+   ...+......  .++..........+.+|+ ++|++++..
T Consensus        19 ~~~lS~~e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~--ssl~y~t~~~~~~g~nfg~vwGgl~~~i   96 (191)
T COG5596          19 YNILSPEERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFS--SSLAYGTGLVHLLGLNFGGVWGGLFSTI   96 (191)
T ss_pred             ccccChhhcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccch--hhcccccccccccCccccccccceeecc
Confidence            3444555778999999999999888888888877764   2222211100  112211122345678888 799999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHhhhhhhhcccCC
Q 031437           80 EQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGK  112 (159)
Q Consensus        80 ~c~~~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g  112 (159)
                      .|..+++|.+.|.||....|+.+|.. +|....
T Consensus        97 ~~~~~r~q~~~~~~n~~~rg~ftG~n-~GvlGl  128 (191)
T COG5596          97 DCTPFRLQLKEQLNNAGKRGFFTGKN-LGVLGL  128 (191)
T ss_pred             ccchHHHHHhhccccccccccccccc-cceeee
Confidence            99999999999999999999999986 766543

>KOG4608 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.0012  Score=53.80  Aligned_cols=45  Identities=16%  Similarity=0.177  Sum_probs=36.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhhhhhcccCC
Q 031437           67 MTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGK  112 (159)
Q Consensus        67 ~~fa~~g~~ys~~~c~~~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g  112 (159)
                      .-.|++.+.|-++...+..+|+|||.||.+.+|.++|++ +.+.-|
T Consensus       136 ~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsv-F~~~~g  180 (270)
T KOG4608|consen  136 WRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSV-FRINVG  180 (270)
T ss_pred             eEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeee-EEeehh
Confidence            334577777888888888899999999999999999986 766544

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=94.94  E-value=0.06  Score=35.73  Aligned_cols=64  Identities=20%  Similarity=0.107  Sum_probs=38.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhccchhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 031437           13 DTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIG   78 (159)
Q Consensus        13 ~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa~~g~~ys~   78 (159)
                      .+|+.|.-..++.|..+|...|++.+.+ +..+.+. .+...++..-+.+-.++..|+.+=++=+.
T Consensus         1 psc~~kikmG~~MG~~VG~~~G~l~G~~-~~~r~g~-~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~   64 (67)
T PF10247_consen    1 PSCFDKIKMGFMMGGAVGGAFGALFGTF-SAFRYGA-RGRGLMRTLGKYMLGSGATFGFFMSIGSV   64 (67)
T ss_pred             CcHHHHHHHHHHHhhHHHhhhhhhhhhH-HHhccCC-CCcchHhHHhHHHhcchhHHHHHHhhhcc
Confidence            4799999999999999988888888773 2222111 01112333333445566677665444333

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

>KOG4096 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.24  E-value=0.17  Score=33.90  Aligned_cols=70  Identities=17%  Similarity=0.049  Sum_probs=43.8

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhccchhHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 031437           11 DEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQL   82 (159)
Q Consensus        11 ~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa~~g~~ys~~~c~   82 (159)
                      ...+|+.|.-...++|..+|...|++.+. +.....+ +.+...++...|.|-.++..|+++=++=++.+|.
T Consensus         3 ~qpSc~dKikmG~~mG~avG~a~G~lfGg-f~~lR~g-~~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~   72 (75)
T KOG4096|consen    3 QQPSCFDKIKMGLMMGGAVGGATGALFGG-FAALRYG-PRGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG   72 (75)
T ss_pred             CCccHHHHHHHHHHHHhhhhhhhhhhccc-hhheeec-CChhHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence            45799999999888888877766666655 2221111 0122234444455667788888877776766664

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=90.47  E-value=5.5  Score=30.30  Aligned_cols=26  Identities=12%  Similarity=0.066  Sum_probs=20.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHh
Q 031437           14 TPMMKTIKGATFGLVSGTIFGTVVAT   39 (159)
Q Consensus        14 ~c~~k~~~~~~~G~~~G~~~G~~~~~   39 (159)
                      .+..+.......++++|.+.|.+.+.
T Consensus        29 ~~~e~~~~~~G~ay~~G~~~Gg~~Gl   54 (149)
T TIGR00983        29 GWFEDLCFGTGTCYLTGLAIGALNGL   54 (149)
T ss_pred             ChhhhhhhhHhHHHHHHHHHHHHHHH
Confidence            45666666788888888888887776

>KOG1398 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.01  E-value=0.44  Score=41.73  Aligned_cols=42  Identities=12%  Similarity=0.109  Sum_probs=37.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhhh
Q 031437           64 NYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGAT  105 (159)
Q Consensus        64 ~~~~~fa~~g~~ys~~~c~~~~~Rgk~D~~N~~~gG~~aGa~  105 (159)
                      +.+.-.+.+-++|..+.|.+.++|-+||..|++++|.+|+..
T Consensus       301 qlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~S  342 (460)
T KOG1398|consen  301 QLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLS  342 (460)
T ss_pred             hhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhhe
Confidence            455667788899999999999999999999999999999976

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=88.07  E-value=7.8  Score=27.77  Aligned_cols=114  Identities=23%  Similarity=0.175  Sum_probs=69.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHhh---hcCcchhhccchhHHHHHHh----hhhhhhhHHHHHHHHHHHHHHHHH
Q 031437           12 EDTPMMKTIKGATFGLVSGTIFGTVVATW---QDVPRVERRVALPGLIRTLK----MMGNYGMTFAAIGGVYIGVEQLVQ   84 (159)
Q Consensus        12 ~~~c~~k~~~~~~~G~~~G~~~G~~~~~~---~~~p~~~~~~~~~~~~~~~~----~~g~~~~~fa~~g~~ys~~~c~~~   84 (159)
                      .+.+...++.+++.|+++|.+.+......   .+.|...+  ....++...+    .....+..-++..++=..++..-+
T Consensus         3 ~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~   80 (128)
T PF02466_consen    3 PERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPR--LRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG   80 (128)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHH--HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35688899999999999999999986532   33343221  1222333322    333444444556666666666654


Q ss_pred             HHHhhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHH
Q 031437           85 HYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSS  129 (159)
Q Consensus        85 ~~Rgk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~  129 (159)
                      +--..|-..-.+++|++-+.- -+.+. -...++.+++..+++-.
T Consensus        81 k~D~~N~~~aG~~aGa~~~~~-~g~~~-~~~~~~~~a~~~~~~~~  123 (128)
T PF02466_consen   81 KDDPWNSAIAGAAAGAVLGLR-SGPRG-MASGAALGAAFAAAVEY  123 (128)
T ss_pred             ccccchhHHHHHHHHHHHHhc-cChHH-HHHHHHHHHHHHHHHHH
Confidence            433467777888888887765 55555 35566665555555543

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00