Citrus Sinensis ID: 031551

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKNSLPRRQHKKKAPKAKAN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccc
Coil and Loop (DISEMBL)
MGFFSFLGRVLFASLFILSAWQMFNdfgvdggpaaKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALsspllydfynyspkhpeftpLLNEFLQSIAIFGALLFFIGmknslprrqhkkkapkakan
Flexible Loop (DISEMBL)
MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKnslprrqhkkkapkakan
Low Complexity Region (SEG)
MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIflkgvggflfvfgnsfgAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKNSLPRRQHKKKAPKAKAN
Disordered region (IsUnstruct)
**FFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGM*******************
Disordered Region (DISOPRED)
*GFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIG********************
Disordered Region (DISEMBL)
MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKNSLP**************
Disordered Region (DISPRO)
*GFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKNS****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKNSLPRRQHKKKAPKAKAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
225433005	157	PREDICTED: uncharacterized protein LOC10	0.993	0.993	0.711	6e-59
388505050	160	unknown [Medicago truncatula] gi|3885211	0.993	0.975	0.698	7e-57
226508374	157	nicotiana lesion-inducing like precursor	0.993	0.993	0.711	1e-56
195604528	157	nicotiana lesion-inducing like [Zea mays	0.993	0.993	0.698	2e-56
255576844	157	conserved hypothetical protein [Ricinus	0.929	0.929	0.746	2e-56
217075464	160	unknown [Medicago truncatula]	0.993	0.975	0.691	6e-56
351723689	160	uncharacterized protein LOC100499785 pre	0.993	0.975	0.673	8e-56
363807658	157	uncharacterized protein LOC100786502 pre	0.993	0.993	0.666	2e-55
15219714	159	HR-like lesion-inducing protein-like pro	0.993	0.981	0.664	3e-53
388509592	164	unknown [Lotus japonicus]	0.993	0.951	0.641	1e-52

>gi|225433005|ref|XP_002284568.1| PREDICTED: uncharacterized protein LOC100256194 [Vitis vinifera] gi|296083597|emb|CBI23586.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 135/156 (86%)

Query: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60
           MGFFSFLGR+LFAS+FILSAWQMF++FGVDGGPAAKELIPK  V K+HIS  LG+ +P++
Sbjct: 1   MGFFSFLGRLLFASIFILSAWQMFDEFGVDGGPAAKELIPKFTVIKQHISSKLGLGVPNI 60

Query: 61  EVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLN 120
           +VR++VAT I LKG+GG LFVFG+SFGA+LLL+++A+++PLLYDFYNY    PEF  LL 
Sbjct: 61  DVRNLVATTIVLKGLGGILFVFGSSFGAYLLLLHLAITTPLLYDFYNYELNKPEFHLLLP 120

Query: 121 EFLQSIAIFGALLFFIGMKNSLPRRQHKKKAPKAKA 156
           EFLQSIA+FGALLFF+GMKN +PRRQ KKK PK K 
Sbjct: 121 EFLQSIALFGALLFFLGMKNCIPRRQLKKKIPKTKT 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505050|gb|AFK40591.1| unknown [Medicago truncatula] gi|388521191|gb|AFK48657.1| unknown [Medicago truncatula]

 Score =  224 bits (572), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 111/159 (69%), Positives = 133/159 (83%), Gaps = 3/159 (1%)

Query: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60
           MGFFSF+GRVLFASLFILSAWQMFN+F   GGP +KELIPKL V +K++S  LG+AIPD 
Sbjct: 1   MGFFSFMGRVLFASLFILSAWQMFNEFDATGGPFSKELIPKLTVVRKNLSSKLGVAIPDF 60

Query: 61  E---VRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTP 117
               VR  VAT IFLKGVGG LFVFG++FG+FLLL ++AL++P+LYDFYNY P  PE+  
Sbjct: 61  NATYVRQFVATIIFLKGVGGILFVFGSTFGSFLLLSHLALTTPILYDFYNYRPTKPEYGL 120

Query: 118 LLNEFLQSIAIFGALLFFIGMKNSLPRRQHKKKAPKAKA 156
           LLNEF+Q+ A+FGALLFFIGMKNS+PR+Q +KK PKAKA
Sbjct: 121 LLNEFIQNAALFGALLFFIGMKNSIPRKQLRKKTPKAKA 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226508374|ref|NP_001147050.1| nicotiana lesion-inducing like precursor [Zea mays] gi|195606894|gb|ACG25277.1| nicotiana lesion-inducing like [Zea mays]

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 128/156 (82%)

Query: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60
           MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAA EL PKL +AK H+S  LG+ +P V
Sbjct: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAATELAPKLHLAKSHLSSRLGVTLPSV 60

Query: 61  EVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLN 120
           EV+ VVA  I LKGVGG LFV GN FGA+LL VY+A+ SP+LYDFYNY P+   F+ LL 
Sbjct: 61  EVKQVVAAIIALKGVGGLLFVIGNIFGAYLLAVYLAVFSPILYDFYNYGPEERHFSLLLT 120

Query: 121 EFLQSIAIFGALLFFIGMKNSLPRRQHKKKAPKAKA 156
           EFLQS+A+FGALLFFIGMKNS P +++ K+ PK KA
Sbjct: 121 EFLQSVALFGALLFFIGMKNSTPTKRNLKRTPKPKA 156

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195604528|gb|ACG24094.1| nicotiana lesion-inducing like [Zea mays]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/156 (69%), Positives = 127/156 (81%)

Query: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60
           MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAA EL PKL +AK H+S  LG+ +P V
Sbjct: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAATELAPKLHLAKSHLSSRLGVTLPSV 60

Query: 61  EVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLN 120
           EV+ VVA  + LKGVGG LFV GN FGA+LL  Y+ + SP+LYDFYNY P+   F+PLL 
Sbjct: 61  EVKQVVAAIVALKGVGGLLFVIGNIFGAYLLAFYLVVVSPILYDFYNYGPEERHFSPLLT 120

Query: 121 EFLQSIAIFGALLFFIGMKNSLPRRQHKKKAPKAKA 156
           EFLQS+A+FGALLFFIGMKNS P +++ K+ PK KA
Sbjct: 121 EFLQSVALFGALLFFIGMKNSTPTKRNLKRTPKPKA 156

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576844|ref|XP_002529308.1| conserved hypothetical protein [Ricinus communis] gi|223531232|gb|EEF33077.1| conserved hypothetical protein [Ricinus communis]

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 128/146 (87%)

Query: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60
           MGFFSFLGRVLFASLFILSAWQMFN+FG DGGPAAKELIPKLA+ KKH+S  LG+ +PD+
Sbjct: 1   MGFFSFLGRVLFASLFILSAWQMFNEFGEDGGPAAKELIPKLAIVKKHLSSTLGVGLPDI 60

Query: 61  EVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLN 120
           + R++VA  IFLKGVGG LFVFG  FGA+LLL+++A+SSPLLYDFYNY    P F+ LLN
Sbjct: 61  DPRNLVAAIIFLKGVGGLLFVFGTPFGAYLLLLHLAVSSPLLYDFYNYGIDEPGFSILLN 120

Query: 121 EFLQSIAIFGALLFFIGMKNSLPRRQ 146
           EFLQS+A+FGALLFF+GMKN +PRRQ
Sbjct: 121 EFLQSVALFGALLFFLGMKNLIPRRQ 146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075464|gb|ACJ86092.1| unknown [Medicago truncatula]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 110/159 (69%), Positives = 132/159 (83%), Gaps = 3/159 (1%)

Query: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPD- 59
           MGFFSF+GRVLFASLFILSAWQMFN+F   GGP +KELIPKL V +K++S  LG+AIP  
Sbjct: 1   MGFFSFMGRVLFASLFILSAWQMFNEFDATGGPFSKELIPKLTVVRKNLSSKLGVAIPHF 60

Query: 60  --VEVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTP 117
               VR  VAT IFLKGVGG LFVFG++FG+FLLL ++AL++P+LYDFYNY P  PE+  
Sbjct: 61  NATYVRQFVATIIFLKGVGGILFVFGSTFGSFLLLSHLALTTPILYDFYNYRPTKPEYGL 120

Query: 118 LLNEFLQSIAIFGALLFFIGMKNSLPRRQHKKKAPKAKA 156
           LLNEF+Q+ A+FGALLFFIGMKNS+PR+Q +KK PKAKA
Sbjct: 121 LLNEFIQNAALFGALLFFIGMKNSIPRKQLRKKTPKAKA 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723689|ref|NP_001236008.1| uncharacterized protein LOC100499785 precursor [Glycine max] gi|255626565|gb|ACU13627.1| unknown [Glycine max]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 105/156 (67%), Positives = 133/156 (85%)

Query: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60
           MGF SFLGRVLFASLFILSAWQMFN+F  +GGP +KELIPKL+V K ++S  LG+A+PD+
Sbjct: 1   MGFSSFLGRVLFASLFILSAWQMFNEFDANGGPISKELIPKLSVVKNNLSSKLGVALPDI 60

Query: 61  EVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLN 120
           + R  +AT IFLKGVGG LFVFG++FG+FLLL+++A+++PLLYDFYN+SP  P++  LLN
Sbjct: 61  DARQFIATIIFLKGVGGILFVFGSTFGSFLLLLHLAITTPLLYDFYNHSPGKPKYNQLLN 120

Query: 121 EFLQSIAIFGALLFFIGMKNSLPRRQHKKKAPKAKA 156
           +FL + A+FGALLFFIGMKNS+PR Q +KK PKAK 
Sbjct: 121 DFLLNTALFGALLFFIGMKNSIPRSQLRKKTPKAKT 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807658|ref|NP_001242161.1| uncharacterized protein LOC100786502 precursor [Glycine max] gi|255644730|gb|ACU22867.1| unknown [Glycine max]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/156 (66%), Positives = 131/156 (83%)

Query: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60
           MGF SFLGRVLFA LFIL+AWQMFN+F  +GGP +KELIPKL V KK++S  LG+A+PD+
Sbjct: 1   MGFSSFLGRVLFAPLFILTAWQMFNEFDANGGPISKELIPKLTVVKKNLSSKLGVALPDI 60

Query: 61  EVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLN 120
           + R  +AT IFLKGVGG LFVFG++FG+FLLL+++A+++PLLYDFYNY P  P++  LLN
Sbjct: 61  DARQFIATIIFLKGVGGILFVFGSTFGSFLLLLHLAITTPLLYDFYNYRPGKPKYNQLLN 120

Query: 121 EFLQSIAIFGALLFFIGMKNSLPRRQHKKKAPKAKA 156
           +FL + A+FGALLFFIGMKNS+PR Q +KK PKAK 
Sbjct: 121 DFLLNTALFGALLFFIGMKNSIPRSQLRKKTPKAKT 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219714|ref|NP_171929.1| HR-like lesion-inducing protein-like protein [Arabidopsis thaliana] gi|2341039|gb|AAB70443.1| Similar to Nicotiana lesion-inducing ORF (gb|U66269) [Arabidopsis thaliana] gi|17979509|gb|AAL50090.1| At1g04340/F19P19_23 [Arabidopsis thaliana] gi|20147297|gb|AAM10362.1| At1g04340/F19P19_23 [Arabidopsis thaliana] gi|332189565|gb|AEE27686.1| HR-like lesion-inducing protein-like protein [Arabidopsis thaliana]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/158 (66%), Positives = 127/158 (80%), Gaps = 2/158 (1%)

Query: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60
           MGFFSFLGRVLFASLFILSAWQMFNDFG DGGPAAKEL PKL + K H+S +LG+++P++
Sbjct: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGTDGGPAAKELAPKLDLTKAHLSSILGVSLPNL 60

Query: 61  EVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLN 120
           EV+ VV   + LKG+GG LFV GN FGA+LL VY+ + SP+LYDFYNY P+  +F+ LL 
Sbjct: 61  EVKQVVWAIVALKGLGGLLFVIGNIFGAYLLAVYLVVVSPILYDFYNYGPEDRQFSLLLT 120

Query: 121 EFLQSIAIFGALLFFIGMKNSLP--RRQHKKKAPKAKA 156
           EFLQS+A+ GALLFFIGMKNS    +R  KK+ PK KA
Sbjct: 121 EFLQSVALLGALLFFIGMKNSTTSSKRILKKRTPKPKA 158

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509592|gb|AFK42862.1| unknown [Lotus japonicus]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 127/156 (81%)

Query: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60
           MGF SFLGR+LFASLFILSAWQM+ +F  +GGP AKELIPKL V KK++S  LG+ +PD+
Sbjct: 1   MGFASFLGRLLFASLFILSAWQMYVEFDANGGPIAKELIPKLTVLKKNLSSKLGVGLPDI 60

Query: 61  EVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLN 120
           + +H VAT IFLKG+GG LFVFG++ GAF LL++  L++PLL+DFYNY P  PE+  LLN
Sbjct: 61  DEQHFVATIIFLKGLGGILFVFGSTLGAFFLLLHQGLTTPLLHDFYNYGPSKPEYHLLLN 120

Query: 121 EFLQSIAIFGALLFFIGMKNSLPRRQHKKKAPKAKA 156
           +F+ + A+FGALLFFIGMKN++PRRQ +KK PK K 
Sbjct: 121 DFMLNTAVFGALLFFIGMKNTIPRRQLRKKTPKTKT 156

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2018364	159	AT1G04340 "AT1G04340" [Arabido	0.993	0.981	0.588	3.1e-44
TAIR|locus:2176476	154	AT5G43460 "AT5G43460" [Arabido	0.968	0.987	0.592	9.3e-43
TAIR|locus:2129720	158	AT4G14420 "AT4G14420" [Arabido	1.0	0.993	0.487	1.5e-33
TAIR|locus:2086248	216	AT3G23190 "AT3G23190" [Arabido	0.292	0.212	0.4	2e-08
TAIR|locus:2086238	217	AT3G23180 "AT3G23180" [Arabido	0.611	0.442	0.256	3e-07
TAIR|locus:504955777	169	AT3G23175 "AT3G23175" [Arabido	0.878	0.816	0.262	3.8e-07

TAIR|locus:2018364 AT1G04340 "AT1G04340" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 93/158 (58%), Positives = 114/158 (72%)

Query:     1 MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60
             MGFFSFLGRVLFASLFILSAWQMFNDFG DGGPAAKEL PKL + K H+S +LG+++P++
Sbjct:     1 MGFFSFLGRVLFASLFILSAWQMFNDFGTDGGPAAKELAPKLDLTKAHLSSILGVSLPNL 60

Query:    61 EVRHVVATNIXXXXXXXXXXXXXXXXXAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLN 120
             EV+ VV   +                 A+LL VY+ + SP+LYDFYNY P+  +F+ LL 
Sbjct:    61 EVKQVVWAIVALKGLGGLLFVIGNIFGAYLLAVYLVVVSPILYDFYNYGPEDRQFSLLLT 120

Query:   121 EFLQSIAIFGALLFFIGMKNSLP--RRQHKKKAPKAKA 156
             EFLQS+A+ GALLFFIGMKNS    +R  KK+ PK KA
Sbjct:   121 EFLQSVALLGALLFFIGMKNSTTSSKRILKKRTPKPKA 158

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2176476 AT5G43460 "AT5G43460" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 93/157 (59%), Positives = 110/157 (70%)

Query:     1 MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60
             MGFFSFLGRVLFASLFILSAWQMFND    GGPAAKEL PKL + K H+S  LG+ +P +
Sbjct:     1 MGFFSFLGRVLFASLFILSAWQMFND----GGPAAKELAPKLDLVKAHLSSRLGVTLPKI 56

Query:    61 EVRHVVATNIXXXXXXXXXXXXXXXXXAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLN 120
             EVR VVAT I                 A+LL  Y+ +  P+LYDFYNY P+   F+ LL 
Sbjct:    57 EVRQVVATIIALKGVGGLLFVIGNTFGAYLLASYLVVFGPILYDFYNYGPQERHFSLLLT 116

Query:   121 EFLQSIAIFGALLFFIGMKNSLPRRQH-KKKAPKAKA 156
             EFLQS+A+FGALLFFIGMKNS P +++ KK+ PK KA
Sbjct:   117 EFLQSVALFGALLFFIGMKNSTPAKKNLKKRTPKPKA 153

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2129720 AT4G14420 "AT4G14420" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 77/158 (48%), Positives = 99/158 (62%)

Query:     1 MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60
             M   SFLGR LF S+F+LSAWQ FNDFG DGG +AK L PK      H++   G  +P V
Sbjct:     1 MELASFLGRALFVSVFLLSAWQEFNDFGEDGGRSAKSLKPKFNAFVNHVTTHTGQQLPPV 60

Query:    61 EVRHVVATNIXXXXXXXXXXXXXXXXXAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLN 120
             +++ +VA  I                 A+LLL++ A+++P+LYDFYNY     EF  L +
Sbjct:    61 DMKILVAAAIALKGIGGLLFVFGSSLGAYLLLLHQAVATPILYDFYNYDVDRKEFGQLFS 120

Query:   121 EFLQSIAIFGALLFFIGMKNSLPR-RQHKKKAPKAKAN 157
             +F QS+A+ G LLFFIGMKNS    RQ +KKAPKAKAN
Sbjct:   121 KFTQSLALLGGLLFFIGMKNSRKHGRQLRKKAPKAKAN 158

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2086248 AT3G23190 "AT3G23190" [Arabidopsis thaliana (taxid:3702)]

 Score = 88 (36.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:     8 GRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAI 57
             GRV+FAS F++SAW+ +  FG+    AA EL PKL   +     ++ + I
Sbjct:    25 GRVVFASAFLVSAWREYYGFGL----AADELRPKLGFFENQAKAIVALGI 70

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006826 "iron ion transport" evidence=RCA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2086238 AT3G23180 "AT3G23180" [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
 Identities = 28/109 (25%), Positives = 47/109 (43%)

Query:     7 LGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVV 66
             +GR LFAS F LS+W  + +   +         PK   +        G    D +++H++
Sbjct:    24 IGRALFASSFFLSSWHDYMELKANWNGTEDYWSPKFGYS--------G----D-QIKHLM 70

Query:    67 ATNIXXXXXXXXXXXXXXXXXAFLLLVYVALSSPLLYDFYNYSPKHPEF 115
               +I                 AFLLL+Y  +++ + +DFYN+     EF
Sbjct:    71 TVSIIVRTLGGLIFIYGSFFGAFLLLMYQGIATMVHHDFYNHRLDTEEF 119

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:504955777 AT3G23175 "AT3G23175" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 41/156 (26%), Positives = 71/156 (45%)

Query:     1 MGFFSFLGRVLFASLFILSAWQMFNDF--GVDGGPAAKELIPKLAVAKKHISKLL----G 54
             M   +F GR+ F+ +F ++A Q + D   G  GGP  K + P + +  K+ SK L    G
Sbjct:    20 MPAIAFFGRMAFSFVFFITAIQDYADHYGGGAGGPLEKTMGPAVNMLSKYGSKALTFYFG 79

Query:    55 IAIPDVEVRHVVATNIXXXXXXXXXXXXXXXXXAFLLLVYVALSSPLLYDFYNYSPKHPE 114
             + +   +VR +    I                 A+ LL     S+ +           P 
Sbjct:    80 MQVVAFDVRLIEFALISAKATAALWFIFGQSIPAYFLLATQIFSTVI-----------P- 127

Query:   115 FTPLLNEFLQSIAIFGALLFFIGMKNSLPRRQHKKK 150
             F   LN+F Q++ + GALL++IG+K+++     ++K
Sbjct:   128 FPTNLNDFTQNLTLIGALLYYIGLKHTVDNLDDEEK 163


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.142   0.425    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      157       140   0.00091  102 3  11 22  0.50    30
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  126 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.21u 0.16s 13.37t   Elapsed:  00:00:01
  Total cpu time:  13.21u 0.16s 13.37t   Elapsed:  00:00:01
  Start:  Sat May 11 06:51:19 2013   End:  Sat May 11 06:51:20 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
pfam05514	138	pfam05514, HR_lesion, HR-like lesion-inducing	2e-59

>gnl|CDD|191296 pfam05514, HR_lesion, HR-like lesion-inducing

 Score =  180 bits (458), Expect = 2e-59
 Identities = 87/138 (63%), Positives = 110/138 (79%)

Query: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60
           M F SFLGRVLFAS+F+LSAWQ F++FG DGGPAAKEL PK  +  KH+SK LG+ +P +
Sbjct: 1   MPFLSFLGRVLFASVFLLSAWQEFSEFGADGGPAAKELRPKFNMFSKHVSKHLGMQVPHI 60

Query: 61  EVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLN 120
           +V+H+VA  I LKG+GG LF+FG+SFGA+LLLVY A ++P+LYDFYNY     EF  L N
Sbjct: 61  DVKHIVAALIALKGLGGLLFIFGSSFGAYLLLVYQAFATPILYDFYNYDVDRSEFVQLFN 120

Query: 121 EFLQSIAIFGALLFFIGM 138
           +F Q++A+ GALLFFIGM
Sbjct: 121 KFTQNLALLGALLFFIGM 138

Family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens. Length = 138

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PF05514	138	HR_lesion: HR-like lesion-inducing ; InterPro: IPR	100.0
COG2259	142	Predicted membrane protein [Function unknown]	99.85
PF07681	85	DoxX: DoxX; InterPro: IPR011637 These proteins app	99.44
PF02077	267	SURF4: SURF4 family; InterPro: IPR002995 The surfe	99.43
KOG3998	270	consensus Putative cargo transport protein ERV29 [	98.66
PF07291	184	MauE: Methylamine utilisation protein MauE; InterP	98.53
PF02077	267	SURF4: SURF4 family; InterPro: IPR002995 The surfe	98.45
KOG3998	270	consensus Putative cargo transport protein ERV29 [	98.13
PF13564	103	DoxX_2: DoxX-like family	98.01
PF04173	167	DoxD: TQO small subunit DoxD; InterPro: IPR007301	97.22
COG4270	131	Predicted membrane protein [Function unknown]	97.16
PF15111	251	TMEM101: TMEM101 protein family	96.76
PF04224	175	DUF417: Protein of unknown function, DUF417; Inter	95.23
PF13781	102	DoxX_3: DoxX-like family	94.24
COG3059	182	Predicted membrane protein [Function unknown]	90.67
PF15111	251	TMEM101: TMEM101 protein family	89.3
smart00752	271	HTTM Horizontally Transferred TransMembrane Domain	84.83

>PF05514 HR_lesion: HR-like lesion-inducing ; InterPro: IPR008637 This is a family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens

Probab=100.00  E-value=3.5e-33  Score=210.50  Aligned_cols=138  Identities=65%  Similarity=1.186  Sum_probs=133.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 031551            1 MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLF   80 (157)
Q Consensus         1 m~~~~~igR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlll   80 (157)
                      |+++.++||++++++|+.|+|||+.+++.+.+++++++.||+..+++++++..|++.|+.+.++++.+++++|.+||+++
T Consensus         1 M~f~sf~GRvLFAs~FllSA~q~f~~fg~dGgpaak~l~Pkl~~~~~~i~s~lG~~vp~~~~k~lv~~~i~lkglGgiLF   80 (138)
T PF05514_consen    1 MGFSSFVGRVLFASVFLLSAWQKFNEFGDDGGPAAKALAPKLNVFKKHISSKLGVQVPHIDVKHLVAAAIALKGLGGILF   80 (138)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHchhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 031551           81 VFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGM  138 (157)
Q Consensus        81 ilG~r~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~~  138 (157)
                      ++|.++||.+|++|++++|++.|||||++.+++|+..++++|+||++++|+||+.+++
T Consensus        81 i~gss~GA~LLll~l~~~Tpi~~dFyn~~~~~~e~~~~l~~F~qnlAL~GALLfFlgM  138 (138)
T PF05514_consen   81 IFGSSFGAYLLLLYLAIVTPILYDFYNYDSESAEFVQLLIMFLQNLALFGALLFFLGM  138 (138)
T ss_pred             HhcchhHHHHHHHHHHHHHHHhhhhhccCCChhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999876778899999999999999999998764

>COG2259 Predicted membrane protein [Function unknown]

Probab=99.85  E-value=1.3e-20  Score=143.19  Aligned_cols=123  Identities=22%  Similarity=0.322  Sum_probs=108.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHh-ccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 031551            2 GFFSFLGRVLFASLFILSAWQMFN-DFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLF   80 (157)
Q Consensus         2 ~~~~~igR~lla~~Fi~~G~~kl~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlll   80 (157)
                      +...++.|++++.+|+.||++|+. ++.++.++++                +.|.|.|...    +++++..|++||+++
T Consensus        13 ~~~lli~Rl~l~~~fi~~G~~K~~~~~~g~~~~~~----------------~~g~p~~~~~----a~~~~~~El~~glll   72 (142)
T COG2259          13 DLGLLILRLLLALIFIVSGLGKLFGGLAGTIQYFE----------------SLGLPPPTLL----AILAAILELVGGLLL   72 (142)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHccCcHHHHHHHH----------------HcCCChHHHH----HHHHHHHHHHHHHHH
Confidence            456789999999999999999999 7888888877                8899999877    888999999999999


Q ss_pred             HHh--hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcC---CCchhhhccc
Q 031551           81 VFG--NSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKN---SLPRRQHKKK  150 (157)
Q Consensus        81 ilG--~r~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~~g~---~l~~~~~~~~  150 (157)
                      ++|  +|++|++++.+++.+++..|.+|+...  .++    ++|.+|++++|+++.++..|+   |+|.+..|++
T Consensus        73 llGl~tr~aA~~l~~~~l~a~~~~h~~~~~~~--~~~----~~~~~~l~~~~~~l~l~~~G~G~~sld~~~~~~~  141 (142)
T COG2259          73 LLGLFTRLAALVLAVFMLVAIFAVHAFWGFFG--LAN----NGFEKNLLLIGGLLLLAITGAGRLSLDAKLRKAA  141 (142)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhhcc--ccc----hhHHHHHHHHHHHHHHHhcCCcccccchhccccc
Confidence            999  489999999999999999999997532  232    789999999999999998887   8888866654

>PF07681 DoxX: DoxX; InterPro: IPR011637 These proteins appear to have some sequence similarity with IPR007301 from INTERPRO but their function is unknown []

Probab=99.44  E-value=1.2e-12  Score=90.37  Aligned_cols=80  Identities=19%  Similarity=0.280  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh--ccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 031551            5 SFLGRVLFASLFILSAWQMFN--DFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVF   82 (157)
Q Consensus         5 ~~igR~lla~~Fi~~G~~kl~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlllil   82 (157)
                      .++.|+.++..|+.+|++|+.  ++++..++.+                +.|.|.|+..    .+.++..|+++|+++++
T Consensus         2 ll~~Ri~lg~~f~~~G~~K~~~~~~~~~~~~~~----------------~~~~~~~~~~----~~~~~~~E~~~gl~l~~   61 (85)
T PF07681_consen    2 LLILRILLGLVFLFHGLQKLFGFGPEGFAGFFA----------------PFGLPPPGLF----AYLAGIAELVGGLLLLL   61 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH----------------HcCCCchHHH----HHHHHHHHHHHHHHHHH
Confidence            478999999999999999999  5555554444                6788888877    89999999999999999


Q ss_pred             h--hHHHHHHHHHHHHHHHHhhhc
Q 031551           83 G--NSFGAFLLLVYVALSSPLLYD  104 (157)
Q Consensus        83 G--~r~~A~~La~~~i~~t~~~H~  104 (157)
                      |  +|++|..++.+++.+++.+|+
T Consensus        62 G~~tr~aa~~~~~~~~~~~~~~H~   85 (85)
T PF07681_consen   62 GLFTRLAALVLALFMLVATFFVHW   85 (85)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcC
Confidence            8  489999999999999999995

They are predicted inner membrane proteins.

>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum []

Probab=99.43  E-value=2.4e-12  Score=107.15  Aligned_cols=75  Identities=23%  Similarity=0.476  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcC---CCchh
Q 031551           71 FLKGVGGFLFVFGN--SFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKN---SLPRR  145 (157)
Q Consensus        71 ~~el~gGlllilG~--r~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~~g~---~l~~~  145 (157)
                      .+..+..+++++|+  |++|.+|++++...++..|+||..+++++.+.....+|++|+|++||+|++...||   |+|++
T Consensus       184 ~~g~~l~i~v~vGyktk~~A~~Lv~~L~~~n~~~n~fW~~~~~~~~~dflkydFfq~lSviGGLLllv~~GpG~~S~D~~  263 (267)
T PF02077_consen  184 IVGLALCILVVVGYKTKLSALLLVLWLSIYNVFVNNFWFYPSDSPMRDFLKYDFFQTLSVIGGLLLLVNLGPGGLSLDEK  263 (267)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHh
Confidence            34455567788997  59999999999999999999999876456677778899999999999999999988   66665

; GO: 0016021 integral to membrane

>KOG3998 consensus Putative cargo transport protein ERV29 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=4.5e-08  Score=80.80  Aligned_cols=76  Identities=21%  Similarity=0.309  Sum_probs=61.0

Q ss_pred             HHHHHHHHH---HHHHhh--HHHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcC---C
Q 031551           70 IFLKGVGGF---LFVFGN--SFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKN---S  141 (157)
Q Consensus        70 ~~~el~gGl---llilG~--r~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~~g~---~  141 (157)
                      +...++|-.   ++.+|+  ++.|.+|.+.+....+..++||..+.+.+-+....++|++++|++||+|++...||   |
T Consensus       183 il~~Iv~~~l~i~v~lGfktKl~a~llvl~L~~~ni~~N~~w~ip~~~~~~df~rydFfqtlSvIGGlLllv~~GpG~~S  262 (270)
T KOG3998|consen  183 ILLSIVSFGLMIFVWLGFKTKLFAILLVLWLFGYNILLNAWWTIPSDNPLRDFSRYDFFQTLSVIGGLLLLVNTGPGGVS  262 (270)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhchhhhccCCchHHHHHHHHHHHHHHHhccEEEEEEecCceee
Confidence            344455553   333885  59999999999999999999999776545566778999999999999999998888   6


Q ss_pred             Cchh
Q 031551          142 LPRR  145 (157)
Q Consensus       142 l~~~  145 (157)
                      +|++
T Consensus       263 vDe~  266 (270)
T KOG3998|consen  263 VDEK  266 (270)
T ss_pred             eccc
Confidence            6665

>PF07291 MauE: Methylamine utilisation protein MauE; InterPro: IPR009908 This entry consists of several bacterial methylamine utilisation MauE proteins

Probab=98.53  E-value=4.7e-06  Score=66.03  Aligned_cols=119  Identities=22%  Similarity=0.171  Sum_probs=79.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 031551            2 GFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFV   81 (157)
Q Consensus         2 ~~~~~igR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGllli   81 (157)
                      +++.++.|..++.+|+++|+.|+.|++...+...                ++.+ .|+.....+++.-..+|++.|++++
T Consensus         7 P~v~~~~r~~l~llf~~aai~Kl~d~~~F~~~i~----------------~y~l-lP~~~~~~~A~~lP~~El~~gl~Ll   69 (184)
T PF07291_consen    7 PVVSLLLRLFLALLFLYAAISKLRDPEAFAASIA----------------AYRL-LPDWLVRPVAWALPWLELALGLLLL   69 (184)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH----------------Hccc-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999976544443                4443 3544434456777899999999999


Q ss_pred             Hhh--H----HHHHHHHHHHHHHHHhhhccCCCCC-----CCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031551           82 FGN--S----FGAFLLLVYVALSSPLLYDFYNYSP-----KHPEFTPLLNEFLQSIAIFGALLFFIG  137 (157)
Q Consensus        82 lG~--r----~~A~~La~~~i~~t~~~H~FW~~~~-----~~~~~~~~~~~FlKNlaliGGlL~~~~  137 (157)
                      ++.  +    .++.++..|++..+....+-..+-|     .+.+.+....+..+|+.+++..+.++.
T Consensus        70 ~~~~~~~a~~~a~~Ll~~F~~ai~~~~~rg~~~idCGCfG~~~~~~l~~~~v~Rn~~L~~~al~la~  136 (184)
T PF07291_consen   70 FPPTRRWAALLAAALLLVFTAAIAINLLRGRTDIDCGCFGGGSSEPLGWFLVVRNLLLAALALALAA  136 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHh
Confidence            774  2    4556666776665554333221101     112233445678999999877665443

Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded [].; GO: 0030416 methylamine metabolic process, 0016021 integral to membrane

>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum []

Probab=98.45  E-value=1.4e-06  Score=72.74  Aligned_cols=108  Identities=17%  Similarity=0.226  Sum_probs=86.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 031551            2 GFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFV   81 (157)
Q Consensus         2 ~~~~~igR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGllli   81 (157)
                      +++..+||.++.+.|+-+|++...+++....++.               ...+  .|.......+....+.|++|.++++
T Consensus        20 ~~LP~iaR~~iVsTFlED~lRi~~QW~~Q~~yl~---------------~~w~--~~~~la~lfl~~n~i~ql~gs~LVl   82 (267)
T PF02077_consen   20 PYLPTIARFLIVSTFLEDGLRIWFQWSDQVDYLQ---------------NSWH--CGWFLAVLFLLLNIIGQLVGSILVL   82 (267)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------------HhcC--CChHHHHHHHHHHHHHHhhhhheEe
Confidence            4577899999999999999999999987766665               1334  3444444457888999999999988


Q ss_pred             HhhH--HHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031551           82 FGNS--FGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIG  137 (157)
Q Consensus        82 lG~r--~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~  137 (157)
                      .-.+  .+..+|....+.-+..++=+|           +..-+++|+|++||++++.+
T Consensus        83 ~rk~~~~a~~~L~~vvvlQ~i~Y~l~~-----------d~~fllRnlsviGgLLLl~a  129 (267)
T PF02077_consen   83 LRKKVEYACGLLFGVVVLQTIAYGLLW-----------DLKFLLRNLSVIGGLLLLLA  129 (267)
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHH
Confidence            6543  788888888888888887676           24579999999999999886

; GO: 0016021 integral to membrane

>KOG3998 consensus Putative cargo transport protein ERV29 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=1.5e-05  Score=66.11  Aligned_cols=108  Identities=19%  Similarity=0.235  Sum_probs=81.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 031551            2 GFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFV   81 (157)
Q Consensus         2 ~~~~~igR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGllli   81 (157)
                      +++.-++|.++.+.|+.+|+.-+.+++....++.               ...|.  +....-..+......|++|.++++
T Consensus        23 ~ylptlaRl~ivSTf~eD~lri~~qw~~q~~~~~---------------~~~~~--~~~~a~~~~~v~~l~~l~g~~liv   85 (270)
T KOG3998|consen   23 PYLPTLARLLIVSTFFEDGLRIVFQWPLQVSYLN---------------INWGC--GYFFAGVFTIVMVLGQLVGSVLIV   85 (270)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH---------------HhcCC--CcHHHHHHHHHHHHHHHhcceEee
Confidence            3577899999999999999999999987666664               23443  333333446677788888888888


Q ss_pred             HhhH--HHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031551           82 FGNS--FGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIG  137 (157)
Q Consensus        82 lG~r--~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~  137 (157)
                      ...+  .+-.+|....+.-++.++-+|           ...-+++|.|++||++++.+
T Consensus        86 ~rkkv~~a~glL~~~~~lq~i~y~i~t-----------~~~~~~rN~sviggllLlla  132 (270)
T KOG3998|consen   86 LRKKVAYATGLLLFIVVLQTIAYSILT-----------DLVFLLRNISVIGGLLLLLA  132 (270)
T ss_pred             eehhhHHHhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHH
Confidence            8776  566666666667777777666           24569999999999999886

>PF13564 DoxX_2: DoxX-like family

Probab=98.01  E-value=4.9e-05  Score=54.10  Aligned_cols=72  Identities=19%  Similarity=0.058  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh---
Q 031551            8 GRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGN---   84 (157)
Q Consensus         8 gR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlllilG~---   84 (157)
                      -+.+++..|+.+|+.|+.+++...+.+.                ..|  .|+..    .+..+++|++|+++++++.   
T Consensus         2 l~~lla~~f~~~g~~kl~~~~~~~~~~~----------------~~g--~p~~~----~~~~G~~Ei~gai~Ll~~~~~~   59 (103)
T PF13564_consen    2 LTILLALFFLFSGVMKLFGPPEMVEMFP----------------KLG--YPKWF----VYVVGVLEILGAIGLLIPLFWN   59 (103)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHhH----------------hcC--CCHHH----HHHHHHHHHHHHHHHHHccccc
Confidence            4688999999999999998854333222                456  46655    7899999999999999871   


Q ss_pred             ----HHHHHHHHHHHHHHHHh
Q 031551           85 ----SFGAFLLLVYVALSSPL  101 (157)
Q Consensus        85 ----r~~A~~La~~~i~~t~~  101 (157)
                          .+++..+...++.+...
T Consensus        60 ~~~~~~aa~~l~~~m~~A~~~   80 (103)
T PF13564_consen   60 PRLSPLAALGLLVLMLGAIYT   80 (103)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH
Confidence                27888888888888764

>PF04173 DoxD: TQO small subunit DoxD; InterPro: IPR007301 P97207 from SWISSPROT is a subunit of the terminal quinol oxidase present in the plasma membrane of Acidianus ambivalens, with calculated molecular mass of 20

Probab=97.22  E-value=0.013  Score=45.95  Aligned_cols=135  Identities=14%  Similarity=0.172  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHH-Hhccc---c-chhhhhhh---hhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHH
Q 031551            6 FLGRVLFASLFILSAWQM-FNDFG---V-DGGPAAKE---LIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGG   77 (157)
Q Consensus         6 ~igR~lla~~Fi~~G~~k-l~~~~---~-~~~~~~~~---~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gG   77 (157)
                      +.-|+..+..|+..|+.| +.+++   . ...++...   ..|.-..+++ .- ..=+..|...... ...-.++|++.|
T Consensus         3 l~lR~~~G~~~~~ag~rr~il~p~kL~p~~~~~vg~k~~~~lp~a~~~~~-~i-~~~v~~~~~l~~~-lv~ft~vE~~~G   79 (167)
T PF04173_consen    3 LALRLVVGWIWFSAGWRRKILNPAKLDPNSTSYVGGKFNQFLPHALPIKP-FI-EFVVLPPDLLFGF-LVVFTIVEIIFG   79 (167)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcCCCCCCcccHHHHHHHHhCcCccccHH-HH-HHHhcCHHHHHHH-HHHHHHHHHHHH
Confidence            467999999999999975 66652   1 12333322   1111100000 00 1112233333222 233456799999


Q ss_pred             HHHHHh--hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH-HhcC-CCchhhhcccC
Q 031551           78 FLFVFG--NSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFI-GMKN-SLPRRQHKKKA  151 (157)
Q Consensus        78 lllilG--~r~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~-~~g~-~l~~~~~~~~~  151 (157)
                      +++++|  +|+++++-+...+...+  -..|.-..-.+|.  +..-    +.+++|+.++. +.|. |+|.-.+||.+
T Consensus        80 l~LilGL~TRLaa~~~~~l~~~i~L--~a~W~g~tc~dEw--~i~~----l~~a~~~~L~~~g~g~~sLD~~l~~k~~  149 (167)
T PF04173_consen   80 LLLILGLFTRLAALVALGLALGILL--SAGWLGTTCLDEW--QINS----LMMAAGLTLFLTGGGRFSLDYYLLRKFP  149 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--hcccCCCCCccHH--HHHH----HHHHHHHHHHHhcCCccccHHHHHHHhh
Confidence            999999  57887775444443333  3478544211233  2221    23455544433 3333 99995554444

4 kDa []. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon A. ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.

>COG4270 Predicted membrane protein [Function unknown]

Probab=97.16  E-value=0.0021  Score=47.76  Aligned_cols=78  Identities=17%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 031551            1 MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLF   80 (157)
Q Consensus         1 m~~~~~igR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlll   80 (157)
                      |+..|.+-|-.++..|+.-|+.+++.++.-.+     ..|            --+|+|...    +++++++|+.||+.+
T Consensus         2 ~~~~R~L~~~~la~~f~~iGi~HF~r~eqf~~-----IVP------------p~vP~p~ta----v~VSG~fEilgglaL   60 (131)
T COG4270           2 MNSARTLLLAFLAAAFLLIGIGHFTRPEQFRR-----IVP------------PCVPLPKTA----VLVSGIFEILGGLAL   60 (131)
T ss_pred             CcHHHHHHHHHHHHHHHHHhhhhccchhhhcc-----cCC------------CCCCcchhH----HHHHHHHHHHhhhhh
Confidence            45667778889999999999999988763211     111            134566545    899999999999999


Q ss_pred             HHhh--HHHHHHHHHHHHHHH
Q 031551           81 VFGN--SFGAFLLLVYVALSS   99 (157)
Q Consensus        81 ilG~--r~~A~~La~~~i~~t   99 (157)
                      ++-.  +.++.-|..++++++
T Consensus        61 lip~~s~~aa~gl~~l~laVf   81 (131)
T COG4270          61 LIPAPSQAAAWGLIILLLAVF   81 (131)
T ss_pred             hcCCcHHHHHhhHHHHHHHHc
Confidence            9663  355555555555444

>PF15111 TMEM101: TMEM101 protein family

Probab=96.76  E-value=0.0049  Score=50.80  Aligned_cols=106  Identities=23%  Similarity=0.273  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh--
Q 031551            7 LGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGN--   84 (157)
Q Consensus         7 igR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlllilG~--   84 (157)
                      .||+.++..-|.+++.=....+.-.++.                  ..+|--+..    +.+-.+.-+++|+++.-|+  
T Consensus       138 tgq~~lgiyli~~Ay~L~~S~Edr~A~l------------------~hipgge~~----l~~~~v~y~~~gl~flsgy~~  195 (251)
T PF15111_consen  138 TGQVFLGIYLICVAYSLQHSKEDRLAYL------------------NHIPGGEVM----LQLLVVLYVVLGLAFLSGYYV  195 (251)
T ss_pred             hhHHHHHHHHHHHHHHHHcCHHHHHHHH------------------hhCCCCchh----HHHHHHHHHHHHHHHHccccH
Confidence            4666777666666664333333221111                  234444544    5566677789999999885  


Q ss_pred             HHHHHHHHHHHHHHHHhhh---ccCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 031551           85 SFGAFLLLVYVALSSPLLY---DFYNYSPKHPEFTPLLNEFLQSIAIFGALLFF  135 (157)
Q Consensus        85 r~~A~~La~~~i~~t~~~H---~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~  135 (157)
                      +..+-.|+.-+.++++...   .||..+. ..|+-+|+...-.|+++.|+++++
T Consensus       196 ~~~~~~lav~l~~~~l~iDgnv~yW~~s~-~vEfW~Qm~li~~nv~I~ga~~il  248 (251)
T PF15111_consen  196 KLAAQILAVLLPFVILLIDGNVKYWHKSR-RVEFWNQMKLIGRNVGIFGALLIL  248 (251)
T ss_pred             HHHHHHHHHHHHHhheEEecchhhhhcch-hhhHHHHHHHHHhcchHhhheeee
Confidence            5777777777777777654   8998776 588999999999999999998875

>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria

Probab=95.23  E-value=0.58  Score=37.04  Aligned_cols=129  Identities=15%  Similarity=0.083  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccch-hhhhhhhhhHHHHHHHhh-----hhhhCCCCCh-------hhHHHHHHHHHHH
Q 031551            6 FLGRVLFASLFILSAWQMFNDFGVDG-GPAAKELIPKLAVAKKHI-----SKLLGIAIPD-------VEVRHVVATNIFL   72 (157)
Q Consensus         6 ~igR~lla~~Fi~~G~~kl~~~~~~~-~~~~~~~~p~~~~~~~~~-----~~~~Gip~p~-------~~~~~~~~~~~~~   72 (157)
                      .+.|+-+..+|+.-|.-|+.++++.. .+.. +..|.+.=+-+..     ...-|- .|+       ...+..-..-+++
T Consensus        16 ~i~r~~i~iVl~WiG~lKf~~yEA~gI~PlV-anSPlmswlY~~~~~~~~~~~~~~-~~~n~~wh~~n~~~~~S~~lG~v   93 (175)
T PF04224_consen   16 NILRLGIVIVLLWIGGLKFTPYEADGIVPLV-ANSPLMSWLYDVFSYKYHQNKEGE-VPENRAWHKANGTYGFSYLLGVV   93 (175)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHhhhhHHH-hCCcHHHHHhhccchhhhhccccc-cHHHHHHHHhcCchhhHHHHHHH
Confidence            57899999999999999999998532 2221 2333332211110     000010 111       0123335677899


Q ss_pred             HHHHHHHHHHhh---H--HHHHHHHHHHHHHHHhhh----ccCCCCCC--CCCchHHHHHHHHHHHHHHHHHHHHH
Q 031551           73 KGVGGFLFVFGN---S--FGAFLLLVYVALSSPLLY----DFYNYSPK--HPEFTPLLNEFLQSIAIFGALLFFIG  137 (157)
Q Consensus        73 el~gGlllilG~---r--~~A~~La~~~i~~t~~~H----~FW~~~~~--~~~~~~~~~~FlKNlaliGGlL~~~~  137 (157)
                      |++-|+++++|.   +  .-..+++..+..+|+.+-    .-|..+.+  |.-.. .=.-.+|++.++|+.+.++.
T Consensus        94 Ei~~~ill~~g~~~p~~g~~G~ll~~~~flvTLSFL~TTP~vw~~~~GGFP~Lsg-~g~fllKDivlLa~~l~~~~  168 (175)
T PF04224_consen   94 EIIIGILLLLGIWSPKLGILGGLLAFGTFLVTLSFLFTTPGVWVPSLGGFPYLSG-AGRFLLKDIVLLAASLVLLS  168 (175)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeccCCCCceecC-CCchHHHHHHHHHHHHHHHH
Confidence            999999999995   2  344556666667776654    34544321  01100 01246899999999998776

>PF13781 DoxX_3: DoxX-like family

Probab=94.24  E-value=0.89  Score=32.60  Aligned_cols=91  Identities=13%  Similarity=0.107  Sum_probs=60.8

Q ss_pred             HHHHHHHHH-HHhccccc-hhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH------
Q 031551           14 SLFILSAWQ-MFNDFGVD-GGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGNS------   85 (157)
Q Consensus        14 ~~Fi~~G~~-kl~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlllilG~r------   85 (157)
                      ++.+++|+- |+..+... .+..                ++.|++.+.  ...+++.++++|++=|+++...+|      
T Consensus         2 ~~Wl~~Glvp~~l~~~~~~~~lL----------------~~~G~~~~~--a~~~~~~~g~~di~lGl~~l~~~~~r~~~~   63 (102)
T PF13781_consen    2 LVWLYSGLVPKLLFPHPGELALL----------------AAVGLPGAL--APLLLYAGGLLDIALGLLLLSRRRRRWLLL   63 (102)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHH----------------HHhCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888885 44454432 1222                255765443  234588899999999999997643      


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHH
Q 031551           86 FGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGA  131 (157)
Q Consensus        86 ~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGG  131 (157)
                      ....++..+++..++..=++|.++         ++-..||+.++.-
T Consensus        64 l~i~~~l~y~~~~~~~~P~lw~~P---------f~Pl~knlp~l~l  100 (102)
T PF13781_consen   64 LQIALLLGYTLAIAILLPELWLHP---------FNPLVKNLPMLAL  100 (102)
T ss_pred             HHHHHHHHHHHHHHHHCHHHHHhh---------hhhHHHHHHHHHH
Confidence            456677888888888776777543         3468899988753

>COG3059 Predicted membrane protein [Function unknown]

Probab=90.67  E-value=4.6  Score=31.81  Aligned_cols=125  Identities=17%  Similarity=0.124  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccc-hhhhhhhhhhHHHHHHHhhh-----hhhCCCCChhh-------HHHHHHHHHHHH
Q 031551            7 LGRVLFASLFILSAWQMFNDFGVD-GGPAAKELIPKLAVAKKHIS-----KLLGIAIPDVE-------VRHVVATNIFLK   73 (157)
Q Consensus         7 igR~lla~~Fi~~G~~kl~~~~~~-~~~~~~~~~p~~~~~~~~~~-----~~~Gip~p~~~-------~~~~~~~~~~~e   73 (157)
                      +.|+-+..+|++-|.-|+.-++++ .++.. +..|.++-+-++-+     +.-|-.-|+--       .......-++.|
T Consensus        19 lirlsI~ivfiWiG~lKf~pyEAd~I~PfV-aNSP~mSf~Yeh~~~~q~m~~e~~~~pe~~~w~~~n~tY~~S~~lGi~e   97 (182)
T COG3059          19 LIRLSIFIVFIWIGGLKFVPYEADGIAPFV-ANSPLMSFMYEHPEDEQYMTHEGEYNPENREWHSENNTYAVSNLLGITE   97 (182)
T ss_pred             ehHHHHHHHHHHHhcceeeechhhhccHHh-hCCcHHHHHHhCcchhhhhhhhhccChhhHHHhhccchhhHHHHhhHHH
Confidence            578999999999999999988754 23332 45566655544211     12233334311       112334568899


Q ss_pred             HHHHHHHHHhhH-----HHHHHHHHHHHHHHHhhh----ccCCC--------CCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 031551           74 GVGGFLFVFGNS-----FGAFLLLVYVALSSPLLY----DFYNY--------SPKHPEFTPLLNEFLQSIAIFGALLFFI  136 (157)
Q Consensus        74 l~gGlllilG~r-----~~A~~La~~~i~~t~~~H----~FW~~--------~~~~~~~~~~~~~FlKNlaliGGlL~~~  136 (157)
                      ++-|+++++|.|     +...+|+.-+-.+|+.+-    .-|-.        ++  .-|     -.+|++.+++|.++++
T Consensus        98 ~ivgilvL~g~~~~~~Gl~GGll~~~~~ivTLSFLiTTPe~wv~~~~gfp~lsg--agr-----lvlKDilmlAgal~v~  170 (182)
T COG3059          98 VIVGILVLIGLRNPKAGLLGGLLVFGTPIVTLSFLITTPEAWVNSLYGFPYLSG--AGR-----LVLKDILMLAGALMVA  170 (182)
T ss_pred             HHHHHHHHhccccchHHHhhhhHHHHHHHHHHHhhhcChhhccccccCceeEcc--cch-----hhHHHHHHHHHHHHHH
Confidence            999999999964     333444444555555431    22211        21  111     3689999999999988


Q ss_pred             Hhc
Q 031551          137 GMK  139 (157)
Q Consensus       137 ~~g  139 (157)
                      +.+
T Consensus       171 ~~~  173 (182)
T COG3059         171 ADD  173 (182)
T ss_pred             Hhh
Confidence            743

>PF15111 TMEM101: TMEM101 protein family

Probab=89.30  E-value=1.8  Score=35.90  Aligned_cols=69  Identities=19%  Similarity=0.106  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031551           66 VATNIFLKGVGGFLFVFGN--SFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIG  137 (157)
Q Consensus        66 ~~~~~~~el~gGlllilG~--r~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~  137 (157)
                      +.+.+++-++||..+-+|.  |..|++.|+-+...|+..+-- ++..  ..+-...-.+.+++++|||.|.+++
T Consensus        50 vY~~~gv~vlc~T~MSf~~krR~fai~tA~QL~Isty~~~~~-~~~~--Y~~WLkvR~~sR~laiIGgyL~las  120 (251)
T PF15111_consen   50 VYVDMGVAVLCATFMSFGVKRRWFAIVTAVQLAISTYLSCFG-QQVH--YSEWLKVRMYSRSLAIIGGYLRLAS  120 (251)
T ss_pred             eehhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-Cccc--hhhHHHHHHHHHHHHHHHhHhhccc
Confidence            4667777788999998884  677777676666655554310 0000  1112345578999999999998773

>smart00752 HTTM Horizontally Transferred TransMembrane Domain

Probab=84.83  E-value=14  Score=30.42  Aligned_cols=19  Identities=26%  Similarity=0.338  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 031551            6 FLGRVLFASLFILSAWQMF   24 (157)
Q Consensus         6 ~igR~lla~~Fi~~G~~kl   24 (157)
                      -+.|++++.+-+.+-+...
T Consensus        10 a~fRi~~g~~~l~~l~~~~   28 (271)
T smart00752       10 AVFRILFGLLMLLDILRER   28 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            4689999999998888775

Sequence analysis of vitamin K dependent gamma-carboxylases (VKGC) revealed the presence of a novel domain, HTTM (Horizontally Transferred TransMembrane) in its N-terminus. In contrast to most known domains, HTTM contains four transmembrane regions. Its occurrence in eukaryotes, bacteria and archaea is more likely caused by horizontal gene transfer than by early invention. The conservation of VKGC catalytic sites indicates an enzymatic function also for the other family members.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00