Citrus Sinensis ID: 031963

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MNDSHMLDPPPTKNGTGEMMMHLHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVFDKTEFPPYEKPSESC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mndshmldppptkngtgeMMMHLHKKMKMHMTFYWgneaevlfsgwpgkraGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFgsmvfdktefppyekpsesc
Flexible Loop (DISEMBL)
mndshmldppptkngtGEMMMHLHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVFDKTefppyekpsesc
Low Complexity Region (SEG)
MNDSHMLDPPPTKNGTGEmmmhlhkkmkmhmTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYllmlslmsFNAGIFLAAVAGQALGFLLFGSMVFDKTEFPPYEKPSESC
Disordered region (IsUnstruct)
************************KKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVFDKT************
Disordered Region (DISOPRED)
*******************************TFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVFDKT**********SC
Disordered Region (DISEMBL)
********PPPTKNGTGEMMMHLHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVFDKTEFP*********
Disordered Region (DISPRO)
************************KKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVF***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNDSHMLDPPPTKNGTGEMMMHLHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVFDKTEFPPYEKPSESC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q39065	170	Copper transporter 1 OS=A	yes	no	0.72	0.635	0.567	1e-30
Q8GWP3	145	Copper transporter 6 OS=A	no	no	0.9	0.931	0.468	6e-30
Q9STG2	158	Copper transporter 2 OS=A	no	no	0.786	0.746	0.495	7e-29
Q8SAA5	145	Copper transporter 4 OS=A	no	no	0.773	0.8	0.462	5e-25
Q94EE4	161	Copper transporter 1 OS=O	yes	no	0.806	0.751	0.496	2e-24
Q9FGU8	151	Copper transporter 3 OS=A	no	no	0.853	0.847	0.403	2e-24
Q60EN8	151	Copper transporter 2 OS=O	no	no	0.846	0.841	0.461	1e-22
Q7XTF8	184	Copper transporter 6 OS=O	no	no	0.74	0.603	0.472	2e-15
Q93VM8	146	Copper transporter 5 OS=A	no	no	0.693	0.712	0.333	3e-12
Q10KT6	183	Copper transporter 4 OS=O	no	no	0.826	0.677	0.345	4e-11

>sp|Q39065|COPT1_ARATH Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 81/111 (72%), Gaps = 3/111 (2%)

Query: 32  TFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGT---TNVAARI 88
           TF+WG   EVLFSGWPG  +GMYAL LIFVF L V+ EWL HS L++  T    N AA +
Sbjct: 45  TFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGL 104

Query: 89  IRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVFDKTE 139
           I+T ++ +R+ L YL+ML++MSFNAG+FL A+AG A+GF+LFGS  F  T 
Sbjct: 105 IQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTS 155

Copper transporter involved in copper acquisition and transport in leaves. Required for copper homeostasis and normal plant growth and development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWP3|COPT6_ARATH Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1

 Score =  129 bits (324), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 92/141 (65%), Gaps = 6/141 (4%)

Query: 10  PPTKNGTGEMMMHLHKKM-KMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIA 68
           PP+   +  M+ H +  M  MHMTF+WG   E+LFSGWPG   GMY L LI VF L VI 
Sbjct: 7   PPSSPSS--MVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIV 64

Query: 69  EWLTHSRLIK-EGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGF 127
           EWL HS +++  G+T+ A  +++T ++ ++  L YL+ML++MSFN G+F+ A+AG A+GF
Sbjct: 65  EWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGF 124

Query: 128 LLFGSMVFDKTEFPPYEKPSE 148
           +LFGS  F        EKP E
Sbjct: 125 MLFGSTAFKNPS--DDEKPFE 143

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STG2|COPT2_ARATH Copper transporter 2 OS=Arabidopsis thaliana GN=COPT2 PE=2 SV=1

 Score =  125 bits (315), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 5/123 (4%)

Query: 33  FYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIK-EGTTNVAARIIRT 91
           F+WG   EVLFSGWPG  +GMYAL LI +F L VIAEWL HS +++  G+TN AA + +T
Sbjct: 34  FFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAHSPILRVSGSTNRAAGLAQT 93

Query: 92  ILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVF----DKTEFPPYEKPS 147
            ++ ++  L YL+ML++MSFNAG+F+ A+AG  +GF LFGS  F    D  +      PS
Sbjct: 94  AVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFGSTTFKKPSDDQKTAELLPPS 153

Query: 148 ESC 150
             C
Sbjct: 154 SGC 156

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8SAA5|COPT4_ARATH Copper transporter 4 OS=Arabidopsis thaliana GN=COPT4 PE=2 SV=2

 Score =  113 bits (282), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 76/119 (63%), Gaps = 3/119 (2%)

Query: 24  HKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWL---THSRLIKEG 80
           H+   +H TFYWG   +VLFSGWPG   GMYALALIFVF L  +AEWL   + +  IK+G
Sbjct: 25  HRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQG 84

Query: 81  TTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVFDKTE 139
              +A    RT ++ ++    YL++L+++SFN G+FLAA+ G ALGF +F    F   +
Sbjct: 85  ADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRNRD 143

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94EE4|COPT1_ORYSJ Copper transporter 1 OS=Oryza sativa subsp. japonica GN=COPT1 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/127 (49%), Positives = 75/127 (59%), Gaps = 6/127 (4%)

Query: 10  PPTKNGTGEMMMHLHKKMK-MHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIA 68
           PP      +  M   K M+  HMTF+WG  +EVLF+ WPG R GMYALALIFVF L VI 
Sbjct: 13  PPAAGAAAQGGMGAMKSMRYTHMTFFWGKNSEVLFTMWPGTRGGMYALALIFVFALAVIV 72

Query: 69  EWLTHSR-----LIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQ 123
           E+L   R              A  + R  +H +RV + YLLML+LMSFN G+FL AVAG 
Sbjct: 73  EFLGSRRADACLAALARRAPAAGGLARAAVHTVRVGVAYLLMLALMSFNGGVFLVAVAGH 132

Query: 124 ALGFLLF 130
           A GFL F
Sbjct: 133 AAGFLAF 139

Involved in the transport of copper, in cooperation with SWEET11 and COPT2. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FGU8|COPT3_ARATH Copper transporter 3 OS=Arabidopsis thaliana GN=COPT3 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 1/129 (0%)

Query: 22  HLHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGT 81
           H H  M MHMTF+WG   EVLF GWPG    MY + L  +F +   +E L+    +K G 
Sbjct: 24  HRHGGM-MHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGP 82

Query: 82  TNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVFDKTEFP 141
            ++   +++T ++ +R +L YL+ML++MSFN G+F+AA+AG  LGF++FGS  F  T   
Sbjct: 83  ASLGGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAFRATSSN 142

Query: 142 PYEKPSESC 150
            + +    C
Sbjct: 143 SHTEVQSHC 151

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q60EN8|COPT2_ORYSJ Copper transporter 2 OS=Oryza sativa subsp. japonica GN=COPT2 PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 82/130 (63%), Gaps = 3/130 (2%)

Query: 23  LHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRL---IKE 79
           + K   MHMTF+WG   EVLF+ WPG R GMYALA++F+F L V+ E+  +  L   +  
Sbjct: 17  VKKARYMHMTFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEFRGYRVLEARLAR 76

Query: 80  GTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVFDKTE 139
                AA  +RT +HA+RV + YL+ML+LMSFN G+FLA VAG A GFL F + +     
Sbjct: 77  RRAPRAAAALRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAFRAGLCGGGP 136

Query: 140 FPPYEKPSES 149
            PP E+  ++
Sbjct: 137 APPLEEDRKN 146

Involved in the transport of copper, in cooperation with SWEET11 and COPT1. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XTF8|COPT6_ORYSJ Copper transporter 6 OS=Oryza sativa subsp. japonica GN=COPT6 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 76/127 (59%), Gaps = 16/127 (12%)

Query: 24  HK-KMKMHMTFYWGNEAEVLFSGWPGKR-AGMYALALIFVFTLGVIAEWLT--HSRLIKE 79
           HK  M MHMTF+W + A VL  GWPG+R AGMYAL L+FV  L  + E L+    RL + 
Sbjct: 32  HKMAMMMHMTFFWSDRAVVLIRGWPGERGAGMYALCLLFVLALAALTEGLSVLSRRLARR 91

Query: 80  GTTNVAARIIR------------TILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGF 127
           G    ++   R            T +HA R+ + YL+ML++MSFN G+ LAAVAG ALGF
Sbjct: 92  GGGAASSDGGRPAPAPASSAALLTAVHAARMGMAYLVMLAVMSFNVGVLLAAVAGHALGF 151

Query: 128 LLFGSMV 134
           LL  S V
Sbjct: 152 LLARSRV 158

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93VM8|COPT5_ARATH Copper transporter 5 OS=Arabidopsis thaliana GN=COPT5 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 25/129 (19%)

Query: 29  MHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSR------------- 75
           MHMTFYWG +A +LF  W       Y L LI  F      ++L + R             
Sbjct: 2   MHMTFYWGIKATILFDFWKTDSWLSYILTLIACFVFSAFYQYLENRRIQFKSLSSSRRAP 61

Query: 76  ------------LIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQ 123
                       LI +  T  AA+    +L  +  ++GYLLML+ MSFN G+F+A V G 
Sbjct: 62  PPPRSSSGVSAPLIPKSGTRSAAKAASVLLFGVNAAIGYLLMLAAMSFNGGVFIAIVVGL 121

Query: 124 ALGFLLFGS 132
             G+ +F S
Sbjct: 122 TAGYAVFRS 130

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10KT6|COPT4_ORYSJ Copper transporter 4 OS=Oryza sativa subsp. japonica GN=COPT4 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 66/136 (48%), Gaps = 12/136 (8%)

Query: 19  MMMHLHKKMKMHMTFYWGNEAEVLFSGWPGKRAGM---YALALIFVFTLGVIAEWLTHSR 75
           MM  +   M   M+F WG+ A VLF  WPG RAG+   +   L+ +    +       SR
Sbjct: 22  MMPGMAMPMTTGMSFTWGHRAVVLFPRWPGDRAGVGMYFLCLLLVLALAALAEALSAASR 81

Query: 76  LIK---------EGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALG 126
            +                  +++   +HA R+ L YL+ML++MSFNAG+ LAAVAG A G
Sbjct: 82  RLDLDLDLSRSRGRRRRRRQQLLAAGVHAARMGLAYLVMLAVMSFNAGVLLAAVAGHAAG 141

Query: 127 FLLFGSMVFDKTEFPP 142
           FLL  S +       P
Sbjct: 142 FLLARSGLLGSRAAAP 157

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
224104365	155	copper transporter [Populus trichocarpa]	0.946	0.916	0.526	5e-40
225434748	151	PREDICTED: copper transporter 6 [Vitis v	0.973	0.966	0.578	4e-38
255587211	163	copper transporter, putative [Ricinus co	0.84	0.773	0.579	3e-36
225434750	177	PREDICTED: copper transporter 1 [Vitis v	0.9	0.762	0.591	2e-35
297745980	160	unnamed protein product [Vitis vinifera]	0.9	0.843	0.591	2e-35
449455070	193	PREDICTED: copper transporter 6-like [Cu	0.926	0.720	0.520	2e-35
449471170	158	PREDICTED: copper transporter 6-like [Cu	0.926	0.879	0.520	3e-35
225434744	173	PREDICTED: copper transporter 1 [Vitis v	0.966	0.838	0.496	1e-34
225440544	152	PREDICTED: copper transporter 6 [Vitis v	0.893	0.881	0.542	3e-34
297745977	133	unnamed protein product [Vitis vinifera]	0.84	0.947	0.527	3e-33

>gi|224104365|ref|XP_002313412.1| copper transporter [Populus trichocarpa] gi|222849820|gb|EEE87367.1| copper transporter [Populus trichocarpa]

 Score =  168 bits (426), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 105/150 (70%), Gaps = 8/150 (5%)

Query: 3   DSHM--LDPPPTK--NGTGEMMMHLHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALAL 58
           D H+  + PPP+   NGT  M      KM  HMTF+WG +  +LFSGWPG   GMY LAL
Sbjct: 4   DHHLPGMSPPPSTPMNGTDGM----DHKMMTHMTFFWGKDTLILFSGWPGTSTGMYVLAL 59

Query: 59  IFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLA 118
           +F+F L V+ EWL+H RL+K G+ NVAA +I+ ++HA+RV L Y++ML++MSFN G+F+ 
Sbjct: 60  VFIFVLAVLVEWLSHCRLVKPGSNNVAAGLIQALMHAVRVGLAYMVMLAVMSFNGGVFIV 119

Query: 119 AVAGQALGFLLFGSMVFDKTEFPPYEKPSE 148
           AVAG  +GF +FGS VF  TE PPY K S+
Sbjct: 120 AVAGHLVGFFIFGSRVFKDTEMPPYHKTSD 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434748|ref|XP_002280121.1| PREDICTED: copper transporter 6 [Vitis vinifera] gi|321496078|gb|ADW93916.1| copper transporter [Vitis vinifera]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/147 (57%), Positives = 108/147 (73%), Gaps = 1/147 (0%)

Query: 2   NDSHMLDPPPTKNGTGEMMMHLHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFV 61
           +  HM   PP  N TG M    H +M MHMTFYWG EAE+LFSGWPG R+GMYALALI V
Sbjct: 4   DHDHMHMSPPPANSTG-MSPMHHMEMMMHMTFYWGKEAEILFSGWPGARSGMYALALIVV 62

Query: 62  FTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVA 121
           F +G+I EWL++ RLIK G+T+ AA +++T+LH IR+ L Y++ML+LMSFN G+FL AVA
Sbjct: 63  FVMGIIVEWLSYCRLIKPGSTHAAAGLVQTLLHTIRIGLAYMVMLALMSFNGGVFLVAVA 122

Query: 122 GQALGFLLFGSMVFDKTEFPPYEKPSE 148
           G A+GFL+FGS V   +E    EK S+
Sbjct: 123 GHAVGFLVFGSRVCRGSEMVSLEKTSD 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587211|ref|XP_002534182.1| copper transporter, putative [Ricinus communis] gi|223525742|gb|EEF28206.1| copper transporter, putative [Ricinus communis]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 91/126 (72%)

Query: 21  MHLHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEG 80
           +H+H+K   HMTF+WG+  EVLF GWPG  +GMYALALIFVF L V+ EW  +  +IK G
Sbjct: 33  IHVHRKALTHMTFFWGHTTEVLFKGWPGSSSGMYALALIFVFVLAVVVEWFNYCSIIKPG 92

Query: 81  TTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVFDKTEF 140
           T  VAA   RT +HA+R  L Y++ML++MSFN GIFLAAV G A+GF LFGS VF+K+E 
Sbjct: 93  TNKVAAGFFRTGMHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFSLFGSKVFNKSEK 152

Query: 141 PPYEKP 146
            P   P
Sbjct: 153 KPDLPP 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434750|ref|XP_002280132.1| PREDICTED: copper transporter 1 [Vitis vinifera] gi|321496076|gb|ADW93915.1| copper transporter [Vitis vinifera]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 104/137 (75%), Gaps = 2/137 (1%)

Query: 10  PPTKNGTGEMMMHLHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAE 69
           PP  N TG   MH  + M   MTFYWG +AE+LFSGWPG R+GMYALALI VF + +I E
Sbjct: 33  PPPANSTGMPPMHHMEMMMH-MTFYWGKKAEILFSGWPGTRSGMYALALIVVFVMAIIVE 91

Query: 70  WLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLL 129
           WL+H +LIK G+T+VAA +++T+LHAIR+ L Y++ML+LMSFN G+FL AVAG A+GFL+
Sbjct: 92  WLSHFQLIKPGSTHVAAGVVQTLLHAIRMGLEYMVMLALMSFNGGMFLVAVAGHAVGFLV 151

Query: 130 FGSMVFDKTE-FPPYEK 145
           FGS +F  +E   P EK
Sbjct: 152 FGSRLFRGSETLRPSEK 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745980|emb|CBI16036.3| unnamed protein product [Vitis vinifera]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 104/137 (75%), Gaps = 2/137 (1%)

Query: 10  PPTKNGTGEMMMHLHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAE 69
           PP  N TG   MH  + M   MTFYWG +AE+LFSGWPG R+GMYALALI VF + +I E
Sbjct: 16  PPPANSTGMPPMHHMEMMMH-MTFYWGKKAEILFSGWPGTRSGMYALALIVVFVMAIIVE 74

Query: 70  WLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLL 129
           WL+H +LIK G+T+VAA +++T+LHAIR+ L Y++ML+LMSFN G+FL AVAG A+GFL+
Sbjct: 75  WLSHFQLIKPGSTHVAAGVVQTLLHAIRMGLEYMVMLALMSFNGGMFLVAVAGHAVGFLV 134

Query: 130 FGSMVFDKTE-FPPYEK 145
           FGS +F  +E   P EK
Sbjct: 135 FGSRLFRGSETLRPSEK 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455070|ref|XP_004145276.1| PREDICTED: copper transporter 6-like [Cucumis sativus] gi|449510892|ref|XP_004163803.1| PREDICTED: copper transporter 6-like [Cucumis sativus]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/148 (52%), Positives = 101/148 (68%), Gaps = 9/148 (6%)

Query: 11  PTKNGTGEMMMHLHKKMK--MHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIA 68
           PT  G+G+ M H H  M   MHMTF+WG   +VLFSGWPG R+GMYA+AL+FVF L V  
Sbjct: 47  PTSRGSGDDM-HTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAV 105

Query: 69  EWLTHSRLIKE-GTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGF 127
           EWL+  R++ E G  NVAA I++T +H IR+ + YL+ML+LMSFN G+F+ AVAG  +GF
Sbjct: 106 EWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGF 165

Query: 128 LLFGSMVFDKTEFPPYEK-----PSESC 150
           L+FGS V  K +   Y++     PS  C
Sbjct: 166 LVFGSRVVKKEKSSAYDQGTVDLPSRVC 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449471170|ref|XP_004153229.1| PREDICTED: copper transporter 6-like [Cucumis sativus]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/148 (52%), Positives = 101/148 (68%), Gaps = 9/148 (6%)

Query: 11  PTKNGTGEMMMHLHKKMK--MHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIA 68
           PT  G+G+ M H H  M   MHMTF+WG   +VLFSGWPG R+GMYA+AL+FVF L V  
Sbjct: 12  PTSRGSGDDM-HTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAV 70

Query: 69  EWLTHSRLIKE-GTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGF 127
           EWL+  R++ E G  NVAA I++T +H IR+ + YL+ML+LMSFN G+F+ AVAG  +GF
Sbjct: 71  EWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGF 130

Query: 128 LLFGSMVFDKTEFPPYEK-----PSESC 150
           L+FGS V  K +   Y++     PS  C
Sbjct: 131 LVFGSRVVKKEKSSAYDQGTVDLPSRVC 158

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434744|ref|XP_002280088.1| PREDICTED: copper transporter 1 [Vitis vinifera] gi|321496082|gb|ADW93918.1| copper transporter [Vitis vinifera]

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 99/149 (66%), Gaps = 4/149 (2%)

Query: 1   MNDSHMLDPPPTKNGTGEMMMHLHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIF 60
           MN + M D     N T    M + K M  HMTF+WG   E+ FSGWPG+ +GMYA+AL  
Sbjct: 22  MNSTSMGD---VMNRTAMGDMKMDKTMMTHMTFFWGMSTEIFFSGWPGQSSGMYAVALAL 78

Query: 61  VFTLGVIAEWLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAV 120
           VF L ++ EWL+H+R IK  T  + A +++T ++ +RV L YL+ML++MSFN G+FL A+
Sbjct: 79  VFGLSMLVEWLSHTRFIKSTTNKLVAGLLQTAMYGLRVGLAYLVMLAVMSFNVGVFLVAI 138

Query: 121 AGQALGFLLFGSMVF-DKTEFPPYEKPSE 148
           AG   GFLLFGS VF D +E  PYEK S+
Sbjct: 139 AGYTTGFLLFGSRVFRDSSEMLPYEKASD 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440544|ref|XP_002276084.1| PREDICTED: copper transporter 6 [Vitis vinifera] gi|321496072|gb|ADW93913.1| copper transporter [Vitis vinifera]

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 98/140 (70%), Gaps = 6/140 (4%)

Query: 10  PPTKNGTGEMMMHLHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAE 69
           PP  N +G    HLH    +HMTF+WG  AE+LFSGWPG  +GMYALALI VF + ++ E
Sbjct: 15  PPVANVSGT---HLHL---IHMTFFWGKNAEILFSGWPGTSSGMYALALILVFVVALLLE 68

Query: 70  WLTHSRLIKEGTTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLL 129
           WL+ S L+K G  NV   +++T L+AIR    Y+LML++MSFN GIFLAAVAG ALGFL+
Sbjct: 69  WLSRSSLLKPGPHNVTTGLLQTALYAIRSGFSYMLMLAVMSFNGGIFLAAVAGHALGFLI 128

Query: 130 FGSMVFDKTEFPPYEKPSES 149
           FGS VF KT     ++ S++
Sbjct: 129 FGSRVFKKTGVTASDERSDA 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745977|emb|CBI16033.3| unnamed protein product [Vitis vinifera]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/127 (52%), Positives = 91/127 (71%), Gaps = 1/127 (0%)

Query: 23  LHKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTT 82
           + K M  HMTF+WG   E+ FSGWPG+ +GMYA+AL  VF L ++ EWL+H+R IK  T 
Sbjct: 1   MDKTMMTHMTFFWGMSTEIFFSGWPGQSSGMYAVALALVFGLSMLVEWLSHTRFIKSTTN 60

Query: 83  NVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVF-DKTEFP 141
            + A +++T ++ +RV L YL+ML++MSFN G+FL A+AG   GFLLFGS VF D +E  
Sbjct: 61  KLVAGLLQTAMYGLRVGLAYLVMLAVMSFNVGVFLVAIAGYTTGFLLFGSRVFRDSSEML 120

Query: 142 PYEKPSE 148
           PYEK S+
Sbjct: 121 PYEKASD 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2102752	158	COPT2 "copper transporter 2" [	0.913	0.867	0.438	1.2e-28
TAIR|locus:2153306	170	COPT1 "copper transporter 1" [	0.713	0.629	0.527	2.8e-27
TAIR|locus:504955951	145	COPT6 "copper transporter 6" [	0.766	0.793	0.449	1.2e-24
TAIR|locus:504955905	145	COPT4 "copper transporter 4" [	0.693	0.717	0.467	9e-22
UNIPROTKB|Q60EN8	151	COPT2 "Copper transporter 2" [	0.753	0.748	0.432	1e-20
UNIPROTKB|Q94EE4	161	COPT1 "Copper transporter 1" [	0.653	0.608	0.485	2.5e-19
TAIR|locus:2153311	151	COPT3 "copper transporter 3" [	0.793	0.788	0.344	3.1e-19
TAIR|locus:2180474	146	COPT5 "copper transporter 5" [	0.38	0.390	0.315	2.5e-10
DICTYBASE|DDB_G0285545	146	DDB_G0285545 "Ctr copper trans	0.326	0.335	0.367	2e-08
ZFIN|ZDB-GENE-040415-3	188	slc31a1 "solute carrier family	0.36	0.287	0.333	2.7e-06

TAIR|locus:2102752 COPT2 "copper transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 61/139 (43%), Positives = 82/139 (58%)

Query:     1 MNDSHMLD-PPPTKNGTGEXXXXXXXXXXXXXTFYWGNEAEVLFSGWPGKRAGMYALALI 59
             M+  HM D PPP+ + +               TF+WG   EVLFSGWPG  +GMYAL LI
Sbjct:     1 MDHDHMHDMPPPSPSSSSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLI 60

Query:    60 FVFTLGVIAEWLTHSRLIK-EGTTNVAARIIRTILHAIRVSLGYXXXXXXXXFNAGIFLA 118
              +F L VIAEWL HS +++  G+TN AA + +T ++ ++  L Y        FNAG+F+ 
Sbjct:    61 VIFLLAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIV 120

Query:   119 AVAGQALGFLLFGSMVFDK 137
             A+AG  +GF LFGS  F K
Sbjct:   121 AIAGYGVGFFLFGSTTFKK 139

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0015678 "high-affinity copper ion transport" evidence=IGI

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2153306 COPT1 "copper transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 58/110 (52%), Positives = 73/110 (66%)

Query:    32 TFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGT---TNVAARI 88
             TF+WG   EVLFSGWPG  +GMYAL LIFVF L V+ EWL HS L++  T    N AA +
Sbjct:    45 TFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGL 104

Query:    89 IRTILHAIRVSLGYXXXXXXXXFNAGIFLAAVAGQALGFLLFGSMVFDKT 138
             I+T ++ +R+ L Y        FNAG+FL A+AG A+GF+LFGS  F  T
Sbjct:   105 IQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNT 154

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;IGI;ISS

GO:0006825 "copper ion transport" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0048235 "pollen sperm cell differentiation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0016020 "membrane" evidence=ISS

TAIR|locus:504955951 COPT6 "copper transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 53/118 (44%), Positives = 72/118 (61%)

Query:    32 TFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIK-EGTTNVAARIIR 90
             TF+WG   E+LFSGWPG   GMY L LI VF L VI EWL HS +++  G+T+ A  +++
Sbjct:    28 TFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLAHSSILRGRGSTSRAKGLVQ 87

Query:    91 TILHAIRVSLGYXXXXXXXXFNAGIFLAAVAGQALGFLLFGSMVFDKTEFPPYEKPSE 148
             T ++ ++  L Y        FN G+F+ A+AG A+GF+LFGS  F        EKP E
Sbjct:    88 TAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFMLFGSTAFKNPSDD--EKPFE 143

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:504955905 COPT4 "copper transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 50/107 (46%), Positives = 62/107 (57%)

Query:    32 TFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTH---SRLIKEGTTNVAARI 88
             TFYWG   +VLFSGWPG   GMYALALIFVF L  +AEWL     +  IK+G   +A   
Sbjct:    33 TFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADKLAKVA 92

Query:    89 IRTILHAIRVSLGYXXXXXXXXFNAGIFLAAVAGQALGFLLFGSMVF 135
              RT ++ ++    Y        FN G+FLAA+ G ALGF +F    F
Sbjct:    93 FRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAF 139

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

UNIPROTKB|Q60EN8 COPT2 "Copper transporter 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 51/118 (43%), Positives = 69/118 (58%)

Query:    32 TFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEW----LTHSRLIKEGTTNVAAR 87
             TF+WG   EVLF+ WPG R GMYALA++F+F L V+ E+    +  +RL +      AA 
Sbjct:    26 TFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEFRGYRVLEARLARRRAPRAAAA 85

Query:    88 IIRTILHAIRVSLGYXXXXXXXXFNAGIFLAAVAGQALGFLLFGSMVFDKTEFPPYEK 145
             + RT +HA+RV + Y        FN G+FLA VAG A GFL F + +      PP E+
Sbjct:    86 L-RTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAFRAGLCGGGPAPPLEE 142

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q94EE4 COPT1 "Copper transporter 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 51/105 (48%), Positives = 61/105 (58%)

Query:    32 TFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAAR---- 87
             TF+WG  +EVLF+ WPG R GMYALALIFVF L VI E+L  SR        +A R    
Sbjct:    36 TFFWGKNSEVLFTMWPGTRGGMYALALIFVFALAVIVEFLG-SRRADACLAALARRAPAA 94

Query:    88 --IIRTILHAIRVSLGYXXXXXXXXFNAGIFLAAVAGQALGFLLF 130
               + R  +H +RV + Y        FN G+FL AVAG A GFL F
Sbjct:    95 GGLARAAVHTVRVGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAF 139

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

TAIR|locus:2153311 COPT3 "copper transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 41/119 (34%), Positives = 64/119 (53%)

Query:    32 TFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAARIIRT 91
             TF+WG   EVLF GWPG    MY + L  +F +   +E L+    +K G  ++   +++T
Sbjct:    33 TFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLGGGLLQT 92

Query:    92 ILHAIRVSLGYXXXXXXXXFNAGIFLAAVAGQALGFLLFGSMVFDKTEFPPYEKPSESC 150
              ++ +R +L Y        FN G+F+AA+AG  LGF++FGS  F  T    + +    C
Sbjct:    93 AVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAFRATSSNSHTEVQSHC 151

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

TAIR|locus:2180474 COPT5 "copper transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
 Identities = 18/57 (31%), Positives = 28/57 (49%)

Query:    76 LIKEGTTNVAARIIRTILHAIRVSLGYXXXXXXXXFNAGIFLAAVAGQALGFLLFGS 132
             LI +  T  AA+    +L  +  ++GY        FN G+F+A V G   G+ +F S
Sbjct:    74 LIPKSGTRSAAKAASVLLFGVNAAIGYLLMLAAMSFNGGVFIAIVVGLTAGYAVFRS 130

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015680 "intracellular copper ion transport" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

DICTYBASE|DDB_G0285545 DDB_G0285545 "Ctr copper transporter family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 86 (35.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query:    90 RTILHAIRVSLGYXXXXXXXXFNAGIFLAAVAGQALGFLLFGSMVFDKT 138
             +TI+H I   + Y        FN GI ++ V G  +GF LFG   F K+
Sbjct:    89 KTIVHMIAFIVNYTIMLIFMSFNGGICISCVLGIGVGFYLFGQKRFSKS 137

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040415-3 slc31a1 "solute carrier family 31 (copper transporters), member 1" [Danio rerio (taxid:7955)]

 Score = 82 (33.9 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query:    86 ARIIRTILHAIRVSLGYXXXXXXXXFNAGIFLAAVAGQALGFLLFG---SMVFDKTE 139
             A  ++T+LH I+V + Y        +N  + +A  AG  LG+ LF    ++V D TE
Sbjct:   129 AHFLQTLLHIIQVVVSYFLMLVFMTYNGYLCIAVAAGAGLGYFLFSWKKAVVVDITE 185

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0042221 "response to chemical stimulus" evidence=IDA

GO:0042539 "hypotonic salinity response" evidence=IDA

GO:0006825 "copper ion transport" evidence=ISS

GO:0046688 "response to copper ion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39065	COPT1_ARATH	No assigned EC number	0.5675	0.72	0.6352	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
pfam04145	102	pfam04145, Ctr, Ctr copper transporter family	5e-30

>gnl|CDD|217925 pfam04145, Ctr, Ctr copper transporter family

 Score =  104 bits (262), Expect = 5e-30
 Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 2/103 (1%)

Query: 29  MHMTFYWG-NEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLIKEGTTNVAAR 87
           M M F WG  +  VLFSGW    AGMYA + I +F L ++ E L   R   E  + +   
Sbjct: 1   MSMLFNWGTKDTCVLFSGWHITTAGMYAGSCIAIFLLAILYEGLKRVRRKLERMS-LFQH 59

Query: 88  IIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLF 130
           +IR +LH ++V L YLLML +M++N G+FLA V G ALG+ LF
Sbjct: 60  LIRALLHFLQVGLSYLLMLIVMTYNGGLFLAVVLGAALGYFLF 102

The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionine probably coordinate copper during the process of metal transport. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG3386	155	consensus Copper transporter [Inorganic ion transp	100.0
PF04145	144	Ctr: Ctr copper transporter family; InterPro: IPR0	100.0
PF11446	55	DUF2897: Protein of unknown function (DUF2897); In	92.05

>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-36  Score=233.88  Aligned_cols=112  Identities=38%  Similarity=0.608  Sum_probs=101.3

Q ss_pred             CCCceeeEEEEcCCceeEEecCCccCChhHHHHHHHHHHHHHHHHHHHhhcccc-----c---CC------------Cch
Q 031963           24 HKKMKMHMTFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLI-----K---EG------------TTN   83 (150)
Q Consensus        24 ~~~~~M~M~F~~~~~~~lLF~~W~~~t~~~y~~s~~~if~la~~~E~L~~~r~~-----k---~~------------s~~   83 (150)
                      ...|+|.|+|||++++++||++|+++|++.|+++|+++|++++++|+||+.|+.     +   +.            +..
T Consensus        11 ~~~~~m~M~f~~~~~~~iLF~~W~~~s~~~~~ls~i~iflla~l~E~Lk~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~~   90 (155)
T KOG3386|consen   11 GQTMMMMMFFHFKTIETILFSSWHITSAGGMALSCIAIFLLAVLYEALKFGREKLFRWQQLRQPTGHGHEIPLSGPSKLL   90 (155)
T ss_pred             cCCCceEEEEecCceeEEEEcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccCcchhh
Confidence            447899999999999999999999999999999999999999999999998862     1   10            111


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhccccc
Q 031963           84 -VAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLFGSMVF  135 (150)
Q Consensus        84 -~~~~l~~~ll~~~q~~lsYlLMLvvMTfN~~lf~aVilG~~iGy~iFg~~~~  135 (150)
                       ...|++|+++|.+|+++||+|||++||||+|+++||++|+++||++|+.+..
T Consensus        91 ~~~~h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~Lavv~Ga~~G~flF~~~~~  143 (155)
T KOG3386|consen   91 NSASHLIQTLLYVVQLGFSYLLMLIFMTFNGYLFLAVVLGAGVGYFLFGSLTF  143 (155)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhheeeeccc
Confidence             5689999999999999999999999999999999999999999999999875

>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation

Probab=100.00  E-value=1.9e-34  Score=215.23  Aligned_cols=102  Identities=40%  Similarity=0.701  Sum_probs=58.6

Q ss_pred             eeEEEEcCC-ceeEEecCCccCChhHHHHHHHHHHHHHHHHHHHhhcccc------cC-----------C----------
Q 031963           29 MHMTFYWGN-EAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSRLI------KE-----------G----------   80 (150)
Q Consensus        29 M~M~F~~~~-~~~lLF~~W~~~t~~~y~~s~~~if~la~~~E~L~~~r~~------k~-----------~----------   80 (150)
                      |+|+|||++ ++++||++|+++|.++|+++|+++|++|+++|+||.+|..      ++           +          
T Consensus         1 M~M~F~~~~~~~~lLF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (144)
T PF04145_consen    1 MSMYFHWGTIRDCLLFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLERRWARRRSRRASCSSSESRSRSDASSKS   80 (144)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHTTT-------------------------------------
T ss_pred             CeeEEEcCCCccEEEeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCccccccc
Confidence            889999998 9999999999999999999999999999999999998752      00           0          


Q ss_pred             --------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhh
Q 031963           81 --------------TTNVAARIIRTILHAIRVSLGYLLMLSLMSFNAGIFLAAVAGQALGFLLF  130 (150)
Q Consensus        81 --------------s~~~~~~l~~~ll~~~q~~lsYlLMLvvMTfN~~lf~aVilG~~iGy~iF  130 (150)
                                    +.....|++|+++|++|++++|+|||+|||||+|+|+||++|.++||++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~~aVv~G~~~G~~~F  144 (144)
T PF04145_consen   81 SPSPSSTSPRSSRRRWFWSQHLIRALLHFVQVLLGYLLMLVVMTYNVYLFIAVVLGAGLGYFLF  144 (144)
T ss_dssp             ---------------------SHHHHHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHTTSS-GG
T ss_pred             ccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHHHHHHHHHHHheeeC
Confidence                          00235789999999999999999999999999999999999999999998

A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.

>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins

Probab=92.05  E-value=0.16  Score=32.76  Aligned_cols=28  Identities=14%  Similarity=0.175  Sum_probs=25.1

Q ss_pred             HhhhhHHHHHHHHHHHHhhHhhcccccc
Q 031963          109 MSFNAGIFLAAVAGQALGFLLFGSMVFD  136 (150)
Q Consensus       109 MTfN~~lf~aVilG~~iGy~iFg~~~~~  136 (150)
                      |+.|+|+++.+++|..+|.+.-=+++.+
T Consensus         1 ~~~~~wlIIviVlgvIigNia~LK~sAk   28 (55)
T PF11446_consen    1 STWNPWLIIVIVLGVIIGNIAALKYSAK   28 (55)
T ss_pred             CcchhhHHHHHHHHHHHhHHHHHHHhcc
Confidence            6899999999999999999998887654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
2ls3_A	29	High affinity copper uptake protein 1; HCTR1 TMDS,	98.75
2ls4_A	26	High affinity copper uptake protein 1; HCTR1 TMDS,	97.86
2ls2_A	26	High affinity copper uptake protein 1; HCTR1 TMDS,	96.87

>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=98.75  E-value=4.1e-12  Score=71.39  Aligned_cols=28  Identities=39%  Similarity=0.831  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031963           86 ARIIRTILHAIRVSLGYLLMLSLMSFNA  113 (150)
Q Consensus        86 ~~l~~~ll~~~q~~lsYlLMLvvMTfN~  113 (150)
                      +|++|+++|++|+++||+|||++||||+
T Consensus         1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~   28 (29)
T 2ls3_A            1 KHLLQTVLHIIQVVISYFLMLIFMTYNK   28 (29)
Confidence            4789999999999999999999999996

>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=97.86  E-value=1.7e-08  Score=55.10  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=22.5

Q ss_pred             hhhHHHHHHHHHHHHhhHhhcccc
Q 031963          111 FNAGIFLAAVAGQALGFLLFGSMV  134 (150)
Q Consensus       111 fN~~lf~aVilG~~iGy~iFg~~~  134 (150)
                      ||+|+++||++|+++||++|++++
T Consensus         1 YNg~l~iavvlGa~~Gyf~F~~~~   24 (26)
T 2ls4_A            1 YNGYLCIAVAAGAGTGYFLFSWKK   24 (26)
Confidence            899999999999999999999864

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00