Citrus Sinensis ID: 032079

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MPKEETMKSGDDDALFCLTKHIDPNSTSSVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLGYFPIRKLKK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEEEEEEEcccccEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHcccccccHEEcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEcccccccccEEEEEEEEEEccccEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccHHHccc
Coil and Loop (DISEMBL)
mpkeetmksgdddALFCLtkhidpnstssvinnietsgydyeddrfyekesknegapnkvsaKSKLHEICaanhwkppsfdccqeegpcyrklFTFKVTFEIESLNTILEcfgapqskkkTAAEHAAEGALWYLEHlgyfpirklkk
Flexible Loop (DISEMBL)
mpkeetmksgddDALFCLTKhidpnstssvinniETSGYDYEDDRFYEKesknegapnkvsaKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEhlgyfpirklkk
Low Complexity Region (SEG)
MPKEETMKSGDDDALFCLTKHIDPNSTSSVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLGYFPIRKLKK
Disordered region (IsUnstruct)
**************LFCLTKHID******VINNIET*GY**************************LHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAP********EHAAEGALWYLEHLGYFPIR****
Disordered Region (DISOPRED)
*****************************************************************LHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNT********************EGALWYLEHLGYFPIR****
Disordered Region (DISEMBL)
**********DDDALFCLTKHIDPNSTSSVINNIETSGYDYEDDRFYE*************AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAP**********AAEGALWYLEHLGYFPIRKLKK
Disordered Region (DISPRO)
***********DDALFCLT******ST********************************VSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLGYFPIRKLKK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKEETMKSGDDDALFCLTKHIDPNSTSSVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLGYFPIRKLKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q9M8N2	198	Ribonuclease 3-like prote	yes	no	0.891	0.661	0.477	2e-19
A7LFZ6	1657	Endoribonuclease Dicer ho	yes	no	0.551	0.048	0.524	4e-19
P84634	1702	Dicer-like protein 4 OS=A	no	no	0.782	0.067	0.456	3e-18
Q9SP32	1909	Endoribonuclease Dicer ho	no	no	0.544	0.041	0.325	3e-06
Q8LMR2	1883	Endoribonuclease Dicer ho	no	no	0.551	0.043	0.325	8e-05
Q6ANV0	241	Ribonuclease 3 OS=Desulfo	yes	no	0.414	0.253	0.409	0.0001

>sp|Q9M8N2|RTL1_ARATH Ribonuclease 3-like protein 1 OS=Arabidopsis thaliana GN=RTL1 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 86/136 (63%), Gaps = 5/136 (3%)

Query: 11  DDDALFCLTK-HIDPNSTSSV-INNIETSGYDYEDDRFYEKESKN-EGAPNKVSAKSKLH 67
           +D+A+   +   IDPNST S+ +        D E     +  SK+ E    + SAKS LH
Sbjct: 61  EDNAISSFSNIQIDPNSTRSISLEKKLAPKPDEEHTTTTKPISKDDESKTRRGSAKSVLH 120

Query: 68  EICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIE--SLNTILECFGAPQSKKKTAAEH 125
           E+CA+  W+PP ++CC  +GPC+ +LFT+KV  EI   S  T+LECFG P+ KKK AAEH
Sbjct: 121 EMCASKRWRPPVYECCNVDGPCHLRLFTYKVMVEIRDSSGKTVLECFGDPRRKKKAAAEH 180

Query: 126 AAEGALWYLEHLGYFP 141
           AAEGALWYLEH+   P
Sbjct: 181 AAEGALWYLEHVKTKP 196

Arabidopsis thaliana (taxid: 3702)

>sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 59/82 (71%), Gaps = 1/82 (1%)

Query: 61   SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLN-TILECFGAPQSKK 119
            +A+S L E+CAAN+WKPP F  C+EEGP + + FT+KV  EI+  + T+LEC    + +K
Sbjct: 1569 TARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQK 1628

Query: 120  KTAAEHAAEGALWYLEHLGYFP 141
            K A EHAA+GALW L+ LG+ P
Sbjct: 1629 KAAQEHAAQGALWCLKQLGHLP 1650

Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce small interfering RNAs (siRNAs) which target the selective destruction of complementary RNAs. Required for the production of 21 nucleotide siRNAs. Regulates shoot apical meristem (SAM) initiation and maintenance, leaf polarization and lemma polarity through the trans-acting siRNAS (ta-siRNAs) pathway, which probably modulate the expression of the ARF2, ARF3, ARF4, ARF14 and ARF15 genes. Can process endogenous 21 nucleotide siRNAs derived from an imperfect inverted repeat. May not be involved in microRNAs (miRNAs) production.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 26   STSSVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQE 85
            S+S VI           +DR  +K     G P+  +AKS LHE C AN WKPP F+CC+E
Sbjct: 1586 SSSYVIRRGLPQAPSKTEDRLPQKAIIKAGGPSSKTAKSLLHETCVANCWKPPHFECCEE 1645

Query: 86   EGPCYRKLFTFKVTFEIESL-NTILECFGAPQSKKKTAAEHAAEGALWYLEHLGYF 140
            EGP + K F +KV  E+E   N  LEC+G  ++ KK AAEHAA+ A+W L+H G+ 
Sbjct: 1646 EGPGHLKSFVYKVILEVEDAPNMTLECYGEARATKKGAAEHAAQAAIWCLKHSGFL 1701

Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the biogenesis of trans-acting small interfering RNAs (ta-siRNAs, derived from the TAS1, TAS2 or TAS3 endogenous transcripts) by cleaving small dsRNAs into 21-24 nucleotide ta-siRNAs. Functions with the dsRNA-binding protein DRB4 in ta-siRNAs processing. Acts in the RDR6/SGS3/DCL4/AGO7 ta-siRNA pathway involved in leaf developmental timing. Plays a role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL2 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. Required for the production of the 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays an important role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the cucumber mosaic virus (CMV), turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL4 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 38/80 (47%)

Query: 48   EKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNT 107
            E E+ N+   ++   +  L++IC   +W  PS+ C +E GP + K FTF V         
Sbjct: 1818 ENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGW 1877

Query: 108  ILECFGAPQSKKKTAAEHAA 127
              EC G P    K A + AA
Sbjct: 1878 TDECIGEPMPSVKKAKDSAA 1897

Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis pathway by cleaving primary miRNAs (pri-miRNAs) and precursor miRNAs (pre-miRNAs). Functions with DRB1/HYL1 and SERRATE proteins for accurate pri-miRNAs to miRNAs processing. Indirectly involved in the production of trans-acting small interfering RNAs (ta-siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved in the processing of natural siRNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving 24 nucleotide nat-siRNAs into 21 nucleotide nat-siRNAs. Can produce RDR6-dependent endogenous ta-siRNAs derived from TAS1 and TAS2. Required for the production of 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). Acts redundantly with DICER-LIKE 3 (DCL3) to promote flowering via repression of FLOWERING LOCUS C (FLC). Represses antiviral RNA silencing through negative regulation of the expression of DCL4 and DCL3.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 42   EDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE 101
            ED+R  + E KN GA  ++  +  L++IC    W  P + C  E GP + K F + V   
Sbjct: 1783 EDER--DGEKKN-GA--QMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVN 1837

Query: 102  IESLNTILECFGAPQSKKKTAAEHAA 127
                    EC G P    K A + AA
Sbjct: 1838 TSDRGWTDECIGEPMPSVKKAKDSAA 1863

Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce microRNAs (miRNAs) of 21-24 nucleotides which target the selective destruction of complementary RNAs. Regulates by this way the development of the plant. May not be involved in small interfering RNAs (siRNAs) production.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q6ANV0|RNC_DESPS Ribonuclease 3 OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=rnc PE=3 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 62  AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKT 121
           AKS+L EI    H + PS+    EEGP ++K FT  V F  E L T     G   SKK+ 
Sbjct: 172 AKSRLQEILQEKHNEGPSYRLDNEEGPSHKKRFTISVLFRDEVLGT-----GEAGSKKEA 226

Query: 122 AAEHAA 127
               AA
Sbjct: 227 EQRGAA 232

Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon.

Desulfotalea psychrophila (strain LSv54 / DSM 12343) (taxid: 177439)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
255572781	219	double-stranded RNA binding protein, put	0.870	0.584	0.542	6e-33
224072687	166	predicted protein [Populus trichocarpa]	0.843	0.746	0.520	1e-31
449468964	227	PREDICTED: uncharacterized protein LOC10	0.612	0.396	0.582	4e-24
397529815	1620	dicer-like protein 4 [Solanum lycopersic	0.632	0.057	0.559	2e-23
356546104	1636	PREDICTED: dicer-like protein 4-like [Gl	0.551	0.049	0.634	2e-21
255638997	168	unknown [Glycine max]	0.564	0.494	0.619	6e-21
356565129	1636	PREDICTED: dicer-like protein 4-like [Gl	0.551	0.049	0.621	7e-21
293335075	264	uncharacterized protein LOC100381550 [Ze	0.653	0.363	0.494	1e-20
413918885	306	hypothetical protein ZEAMMB73_714278 [Ze	0.653	0.313	0.494	1e-20
297842797	190	hypothetical protein ARALYDRAFT_316895 [	0.809	0.626	0.495	6e-20

>gi|255572781|ref|XP_002527323.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223533323|gb|EEF35075.1| double-stranded RNA binding protein, putative [Ricinus communis]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 77/142 (54%), Positives = 97/142 (68%), Gaps = 14/142 (9%)

Query: 11  DDDALFCLTKHIDPNS----TSSVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKSKL 66
           DD +  C  KHID N+    T S +N      Y+  D+R    +S       +VSAKS+L
Sbjct: 84  DDLSSVCAIKHIDSNNFVKKTHSKLN------YEGSDNRVLVDKS---SELKRVSAKSQL 134

Query: 67  HEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE-IESLNTILECFGAPQSKKKTAAEH 125
           HEIC AN+WKPP ++CC+EEGPC+++LFTFKV  E I +   +LEC+G P+ KKKTAAEH
Sbjct: 135 HEICVANNWKPPLYECCKEEGPCHQRLFTFKVIVEMIGAEYIVLECYGIPKIKKKTAAEH 194

Query: 126 AAEGALWYLEHLGYFPIRKLKK 147
           AAEGALWYL+HLGYFPI K  K
Sbjct: 195 AAEGALWYLKHLGYFPINKWDK 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072687|ref|XP_002303835.1| predicted protein [Populus trichocarpa] gi|222841267|gb|EEE78814.1| predicted protein [Populus trichocarpa]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 94/144 (65%), Gaps = 20/144 (13%)

Query: 5   ETMKSGDDDALFCLTKHIDPNSTSSVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKS 64
           + +K+GDD               SS I N    G   +DD    K S N+    K+SAKS
Sbjct: 40  QIIKTGDD---------------SSTIKNTTKVGEISKDD----KNSHNDSGGPKISAKS 80

Query: 65  KLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIES-LNTILECFGAPQSKKKTAA 123
           +L E  AAN WKPP F+C +EEGPC++KLFT+KV   IE   +T+LECFG P+  KKTAA
Sbjct: 81  QLLETLAANKWKPPLFECFKEEGPCHKKLFTYKVAIRIEGEASTVLECFGYPKPTKKTAA 140

Query: 124 EHAAEGALWYLEHLGYFPIRKLKK 147
           EHAAEGALWYL+HLGYFPI+K+K+
Sbjct: 141 EHAAEGALWYLKHLGYFPIKKVKR 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468964|ref|XP_004152191.1| PREDICTED: uncharacterized protein LOC101212514 [Cucumis sativus] gi|449528319|ref|XP_004171152.1| PREDICTED: uncharacterized protein LOC101230392 [Cucumis sativus]

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 67/91 (73%), Gaps = 1/91 (1%)

Query: 50  ESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIES-LNTI 108
           +S  EG P K +AKS L EIC ANHW+PP F+CC+EEGP + K + FKV  E++     +
Sbjct: 133 DSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIEMKGDCEAV 192

Query: 109 LECFGAPQSKKKTAAEHAAEGALWYLEHLGY 139
           +EC+G  Q++KK AAEHAAEGALWYL HLGY
Sbjct: 193 VECYGNLQTRKKVAAEHAAEGALWYLNHLGY 223

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397529815|gb|AFO53518.1| dicer-like protein 4 [Solanum lycopersicum]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 68/93 (73%)

Query: 48   EKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNT 107
            ++++K  G     SAKS+LHEICAAN WKPP F+CC+E GP + K FTF+V  EIE  + 
Sbjct: 1525 KEDAKATGGSKTESAKSRLHEICAANCWKPPLFECCKETGPSHLKEFTFRVLVEIEETSR 1584

Query: 108  ILECFGAPQSKKKTAAEHAAEGALWYLEHLGYF 140
            ++E +G  Q+KKK AAEHAAEGALW+L+  GY 
Sbjct: 1585 VIESYGEAQAKKKDAAEHAAEGALWFLKQEGYL 1617

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546104|ref|XP_003541471.1| PREDICTED: dicer-like protein 4-like [Glycine max]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 64/82 (78%), Gaps = 1/82 (1%)

Query: 61   SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEI-ESLNTILECFGAPQSKK 119
            +A+S+L+E+CAA  WKPPSF+CC++EGP + K FT KVT EI E+ N ILE  G P SKK
Sbjct: 1551 TARSRLYELCAAYCWKPPSFECCKKEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKK 1610

Query: 120  KTAAEHAAEGALWYLEHLGYFP 141
            K AAE AAEGALWYL+H G+ P
Sbjct: 1611 KDAAESAAEGALWYLQHEGFLP 1632

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638997|gb|ACU19799.1| unknown [Glycine max]

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query: 61  SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEI-ESLNTILECFGAPQSKK 119
           +A+S+L+E+CA+  WKPPSF+CC+ EGP + K FT KVT EI E+ N ILE  G P SKK
Sbjct: 83  TARSRLYELCASYCWKPPSFECCKAEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKK 142

Query: 120 KTAAEHAAEGALWYLEHLGYFPIR 143
           K AAE AAEGA WYL+H GY P R
Sbjct: 143 KDAAESAAEGAFWYLQHEGYLPSR 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565129|ref|XP_003550797.1| PREDICTED: dicer-like protein 4-like [Glycine max]

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 61   SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEI-ESLNTILECFGAPQSKK 119
            +A+S+L+E+CA+  WKPPSF+CC+ EGP + K FT KVT EI E+ N ILE  G P SKK
Sbjct: 1551 TARSRLYELCASYCWKPPSFECCKAEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKK 1610

Query: 120  KTAAEHAAEGALWYLEHLGYFP 141
            K AAE AAEGA WYL+H GY P
Sbjct: 1611 KDAAESAAEGAFWYLQHEGYLP 1632

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293335075|ref|NP_001167848.1| uncharacterized protein LOC100381550 [Zea mays] gi|223944409|gb|ACN26288.1| unknown [Zea mays]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 69/99 (69%), Gaps = 3/99 (3%)

Query: 44  DRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIE 103
           D+  +KE    G   + +A+S L+E+CAAN+WKPP F+ C +EGP + + FT KV  EI 
Sbjct: 162 DKINQKEY--HGDMVRKTARSFLYELCAANYWKPPEFELCNDEGPSHLRKFTCKVLIEIT 219

Query: 104 SLN-TILECFGAPQSKKKTAAEHAAEGALWYLEHLGYFP 141
             + ++LEC+  P+ +K+ A EHAAEGALWYL+HLGY P
Sbjct: 220 GTSVSLLECYSDPKLQKRAAQEHAAEGALWYLKHLGYLP 258

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413918885|gb|AFW58817.1| hypothetical protein ZEAMMB73_714278 [Zea mays]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 69/99 (69%), Gaps = 3/99 (3%)

Query: 44  DRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIE 103
           D+  +KE    G   + +A+S L+E+CAAN+WKPP F+ C +EGP + + FT KV  EI 
Sbjct: 204 DKINQKEY--HGDMVRKTARSFLYELCAANYWKPPEFELCNDEGPSHLRKFTCKVLIEIT 261

Query: 104 SLN-TILECFGAPQSKKKTAAEHAAEGALWYLEHLGYFP 141
             + ++LEC+  P+ +K+ A EHAAEGALWYL+HLGY P
Sbjct: 262 GTSVSLLECYSDPKLQKRAAQEHAAEGALWYLKHLGYLP 300

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842797|ref|XP_002889280.1| hypothetical protein ARALYDRAFT_316895 [Arabidopsis lyrata subsp. lyrata] gi|297335121|gb|EFH65539.1| hypothetical protein ARALYDRAFT_316895 [Arabidopsis lyrata subsp. lyrata]

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 77/123 (62%), Gaps = 4/123 (3%)

Query: 21  HIDPNSTSSVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSF 80
            IDPNST S+    +      ED         +E    + SAKS LHEICA+  W+PP +
Sbjct: 58  QIDPNSTRSITQENKLVPKPEEDTTTKPNSKGDES--KRGSAKSVLHEICASKRWRPPVY 115

Query: 81  DCCQEEGPCYRKLFTFKVTFEI--ESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLG 138
           +CC+ +GPC+ +LFT+KV  EI   S  T+LECFG P+  KK AAEHAAEGALWYLEH+ 
Sbjct: 116 ECCKVDGPCHLRLFTYKVVVEIIESSGKTVLECFGDPRRNKKAAAEHAAEGALWYLEHVK 175

Query: 139 YFP 141
             P
Sbjct: 176 AKP 178

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2198898	198	RTL1 "RNAse THREE-like protein	0.863	0.641	0.484	1.3e-27
TAIR|locus:2149259	1702	DCL4 "dicer-like 4" [Arabidops	0.775	0.066	0.460	5.7e-22
TAIR|locus:2126111	190	AT4G00420 [Arabidopsis thalian	0.768	0.594	0.458	3.9e-21
UNIPROTKB|A7LFZ6	1657	DCL4 "Endoribonuclease Dicer h	0.639	0.056	0.484	2.9e-18
UNIPROTKB|Q8LMR2	1883	DCL1 "Endoribonuclease Dicer h	0.551	0.043	0.325	1.9e-05

TAIR|locus:2198898 RTL1 "RNAse THREE-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 64/132 (48%), Positives = 86/132 (65%)

Query:    11 DDDALFCLTK-HIDPNSTSSVINNIETSGYDYEDDRFYEKE-SKN-EGAPNKVSAKSKLH 67
             +D+A+   +   IDPNST S+    + +    E+     K  SK+ E    + SAKS LH
Sbjct:    61 EDNAISSFSNIQIDPNSTRSISLEKKLAPKPDEEHTTTTKPISKDDESKTRRGSAKSVLH 120

Query:    68 EICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIE--SLNTILECFGAPQSKKKTAAEH 125
             E+CA+  W+PP ++CC  +GPC+ +LFT+KV  EI   S  T+LECFG P+ KKK AAEH
Sbjct:   121 EMCASKRWRPPVYECCNVDGPCHLRLFTYKVMVEIRDSSGKTVLECFGDPRRKKKAAAEH 180

Query:   126 AAEGALWYLEHL 137
             AAEGALWYLEH+
Sbjct:   181 AAEGALWYLEHV 192

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149259 DCL4 "dicer-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 5.7e-22, P = 5.7e-22
 Identities = 53/115 (46%), Positives = 70/115 (60%)

Query:    26 STSSVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQE 85
             S+S VI           +DR  +K     G P+  +AKS LHE C AN WKPP F+CC+E
Sbjct:  1586 SSSYVIRRGLPQAPSKTEDRLPQKAIIKAGGPSSKTAKSLLHETCVANCWKPPHFECCEE 1645

Query:    86 EGPCYRKLFTFKVTFEIESL-NTILECFGAPQSKKKTAAEHAAEGALWYLEHLGY 139
             EGP + K F +KV  E+E   N  LEC+G  ++ KK AAEHAA+ A+W L+H G+
Sbjct:  1646 EGPGHLKSFVYKVILEVEDAPNMTLECYGEARATKKGAAEHAAQAAIWCLKHSGF 1700

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0004525 "ribonuclease III activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006396 "RNA processing" evidence=ISS;RCA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016891 "endoribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010050 "vegetative phase change" evidence=RCA;IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0010216 "maintenance of DNA methylation" evidence=IMP

GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA;IMP

GO:0051607 "defense response to virus" evidence=RCA;IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=IGI;RCA

GO:0009616 "virus induced gene silencing" evidence=IGI;RCA

GO:0010599 "production of lsiRNA involved in RNA interference" evidence=IMP

GO:0006353 "DNA-dependent transcription, termination" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016569 "covalent chromatin modification" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2126111 AT4G00420 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 55/120 (45%), Positives = 75/120 (62%)

Query:    22 IDPNSTSSVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFD 81
             ++PN T   + N   S  +  D R +  E   E    + SAKS+L+ +C+  HWK P ++
Sbjct:    49 MEPNFT---LENTLVSEPE-ADLRPHTTEPTTEEETQRSSAKSQLYNLCSVRHWKAPLYE 104

Query:    82 CCQEEGPCYRKLFTFKVTFEI--ESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLGY 139
                E GPC+ K+FT KVT E+  +S  T+LECFG PQ KKK AAE AAE ALWYL+++GY
Sbjct:   105 YIAE-GPCHMKIFTGKVTVEMKEDSRITVLECFGNPQYKKKIAAEQAAEAALWYLKNVGY 163

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A7LFZ6 DCL4 "Endoribonuclease Dicer homolog 4" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 236 (88.1 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 47/97 (48%), Positives = 64/97 (65%)

Query:    48 EKESKN--EGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESL 105
             EK +K    G     +A+S L E+CAAN+WKPP F  C+EEGP + + FT+KV  EI+  
Sbjct:  1554 EKSNKKVYHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGA 1613

Query:   106 N-TILECFGAPQSKKKTAAEHAAEGALWYLEHLGYFP 141
             + T+LEC    + +KK A EHAA+GALW L+ LG+ P
Sbjct:  1614 SATLLECHSDGKLQKKAAQEHAAQGALWCLKQLGHLP 1650

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=IDA

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IMP

GO:0048608 "reproductive structure development" evidence=IMP

UNIPROTKB|Q8LMR2 DCL1 "Endoribonuclease Dicer homolog 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 116 (45.9 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 28/86 (32%), Positives = 39/86 (45%)

Query:    42 EDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE 101
             ED+R  + E KN GA  ++  +  L++IC    W  P + C  E GP + K F + V   
Sbjct:  1783 EDER--DGEKKN-GA--QMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVN 1837

Query:   102 IESLNTILECFGAPQSKKKTAAEHAA 127
                     EC G P    K A + AA
Sbjct:  1838 TSDRGWTDECIGEPMPSVKKAKDSAA 1863


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      147       147   0.00091  103 3  11 23  0.38    32
                                                     30  0.50    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  166 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.73u 0.16s 14.89t   Elapsed:  00:00:00
  Total cpu time:  14.73u 0.16s 14.89t   Elapsed:  00:00:00
  Start:  Fri May 10 14:20:18 2013   End:  Fri May 10 14:20:18 2013

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_III001518 hypothetical protein (166 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	2e-14
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	1e-07
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	1e-06
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	0.002

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 63.4 bits (155), Expect = 2e-14
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 62  AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKT 121
            KS L E+        P ++  +EEGP +   FT +VT         +   G   SKK+ 
Sbjct: 2   PKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTV-----GGKITGEGEGSSKKE- 55

Query: 122 AAEHAAEGALWYL 134
           A ++AAE AL  L
Sbjct: 56  AKQNAAEAALRKL 68

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 45.7 bits (109), Expect = 1e-07
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 62  AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKT 121
            KS L E+       PP ++  +EEGP +   FT  V           E  G   S KK 
Sbjct: 1   PKSLLQELAQKRKL-PPEYELVKEEGPDHAPRFTVTVKV---GGKRTGEGEG---SSKKE 53

Query: 122 AAEHAAEGALWYLE 135
           A + AAE AL  L+
Sbjct: 54  AKQRAAEAALRSLK 67

Length = 67

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 62  AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKT 121
            KS L E+C     KPP ++  +EEGP +   FT  VT   +   T     G   SKK+ 
Sbjct: 1   PKSLLQELCQKKGPKPP-YEYVEEEGPPHSPTFTVTVTVNGKKYGT-----GTGSSKKE- 53

Query: 122 AAEH-AAEGALWYL 134
            A+  AAE AL  L
Sbjct: 54  -AKQLAAEKALQKL 66

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 62  AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKT 121
            K+ L E   A     P +   +EEGP + K FT +V     S+N      G  +SKK  
Sbjct: 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEV-----SVNGEPYGEGKGKSKK-- 206

Query: 122 AAE-HAAEGAL 131
            AE +AA+ AL
Sbjct: 207 EAEQNAAKAAL 217

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.81
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.78
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	99.76
PRK12371	235	ribonuclease III; Reviewed	99.76
smart00358	67	DSRM Double-stranded RNA binding motif.	99.75
PHA03103	183	double-strand RNA-binding protein; Provisional	99.75
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	99.72
PRK14718	467	ribonuclease III; Provisional	99.69
PRK12372	413	ribonuclease III; Reviewed	99.66
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.66
PRK00102	229	rnc ribonuclease III; Reviewed	99.6
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	99.55
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.48
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.46
KOG1817	533	consensus Ribonuclease [RNA processing and modific	98.55
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	98.36
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	97.79
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	97.64
KOG4334	650	consensus Uncharacterized conserved protein, conta	97.27
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	96.95
PF14954	252	LIX1: Limb expression 1	92.57
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	91.47
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	89.11
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	87.06
KOG0701	1606	consensus dsRNA-specific nuclease Dicer and relate	82.77
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	82.4

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.81  E-value=7.3e-20  Score=146.54  Aligned_cols=84  Identities=21%  Similarity=0.164  Sum_probs=71.9

Q ss_pred             cccccccccCCCCCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHH
Q 032079           44 DRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAA  123 (147)
Q Consensus        44 ~~~~~~~~~~~~~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AE  123 (147)
                      |-+|...++   .....||||+||||||++++.+ .|+++.++||+|.+.|++.|+|+|..++.+   .   |+|||+||
T Consensus        95 d~~~~~~i~---~~k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G---~---G~SKKeAE  164 (183)
T PHA02701         95 DVLTVSAVM---RLKTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATA---S---GCSKKLAR  164 (183)
T ss_pred             ccccHHHhh---cCCCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEE---E---eCCHHHHH
Confidence            445555555   4446799999999999998877 899999999999999999999999998753   4   49999999


Q ss_pred             HHHHHHHHHHHHhC
Q 032079          124 EHAAEGALWYLEHL  137 (147)
Q Consensus       124 q~AA~~AL~~L~~~  137 (147)
                      |+||+.||..|...
T Consensus       165 Q~AAk~AL~~L~~~  178 (183)
T PHA02701        165 HAACADALTILINN  178 (183)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998653

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.78  E-value=1.9e-18  Score=112.13  Aligned_cols=68  Identities=35%  Similarity=0.398  Sum_probs=60.9

Q ss_pred             ChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079           61 SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        61 d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      |||+.|+||||+++|..|.|+++...|++|.+.|+|.|.|++..++.     | .|+|||+|++.||+.||..|
T Consensus         1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-----g-~g~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048           1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGE-----G-EGSSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEE-----e-ecCCHHHHHHHHHHHHHHhC
Confidence            69999999999999999999998889999999999999999966553     3 24899999999999999865

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=99.76  E-value=3.9e-18  Score=119.82  Aligned_cols=75  Identities=45%  Similarity=0.700  Sum_probs=66.0

Q ss_pred             CChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEecc--ccceeec--CCCCCHHHHHHHHHHHHHHHH
Q 032079           60 VSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLN--TILECFG--APQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        60 ~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~--~~~~~~G--~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      +++++.|+|+|++++|+.|.|+++.+.||+|.+.|+++|.|++..+.  ..+.+.+  ...++||+|++.||+.||+.|
T Consensus         1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L   79 (80)
T PF14709_consen    1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL   79 (80)
T ss_pred             CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence            47899999999999999999999989999999999999999988773  2334444  567999999999999999887

>PRK12371 ribonuclease III; Reviewed

Probab=99.76  E-value=3.4e-18  Score=140.36  Aligned_cols=73  Identities=26%  Similarity=0.229  Sum_probs=66.1

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ...||||+||||||++++..|.|++++++||+|.+.|+|.|+|+|..++.     | .|+|||+||+.||+.||+.|..
T Consensus       159 ~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~-----g-~G~sKK~Ae~~AA~~al~~~~~  231 (235)
T PRK12371        159 ARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPET-----G-EGRSKRAAEQVAAEKMLEREGV  231 (235)
T ss_pred             ccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEE-----e-eeCCHHHHHHHHHHHHHHHhhh
Confidence            45699999999999998999999999999999999999999999988764     3 3599999999999999998864

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.75  E-value=6.8e-18  Score=109.96  Aligned_cols=66  Identities=38%  Similarity=0.464  Sum_probs=59.8

Q ss_pred             hhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079           62 AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        62 ~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      ||+.|+||||+++| .|.|+++...|++|.+.|+|.|.|++..++.     | .|.|||+|++.||+.||..|
T Consensus         1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-----g-~g~sKk~Ak~~AA~~al~~L   66 (67)
T smart00358        1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGE-----G-EGSSKKEAKQRAAEAALRSL   66 (67)
T ss_pred             CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEE-----e-ccCCHHHHHHHHHHHHHHhc
Confidence            68999999999999 8999998888999999999999999987653     4 35999999999999999877

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.75  E-value=4.6e-18  Score=136.29  Aligned_cols=73  Identities=19%  Similarity=0.121  Sum_probs=63.1

Q ss_pred             CCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           56 APNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        56 ~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      .-...||||+||||||++++..  |.++.++||+|.+.|++.|+|+|..++++   .   |+|||+|||+||+.||..|.
T Consensus       105 d~K~kNpKS~LQE~~Qk~~~~~--y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G---~---G~SKKeAEQ~AAk~AL~~L~  176 (183)
T PHA03103        105 SWKDKNPCTVINEYCQITSRDW--SINITSSGPSHSPTFTASVIISGIKFKPA---I---GSTKKEAKNNAAKLAMDKIL  176 (183)
T ss_pred             ccccCChhHHHHHHHHHhCCCe--EEEEEeeCCCCCceEEEEEEECCEEEEEe---e---eCCHHHHHHHHHHHHHHHHH
Confidence            3346688899999999998763  77778899999999999999999998753   3   49999999999999999986


Q ss_pred             h
Q 032079          136 H  136 (147)
Q Consensus       136 ~  136 (147)
                      .
T Consensus       177 ~  177 (183)
T PHA03103        177 N  177 (183)
T ss_pred             h
Confidence            4

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=99.72  E-value=1.9e-17  Score=136.89  Aligned_cols=76  Identities=33%  Similarity=0.375  Sum_probs=68.4

Q ss_pred             CCCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079           55 GAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        55 ~~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      ......|||++||||||++++.+|.|+++.++||+|.+.|++.|.|++..++.     | .|+|||+|||.||+.||..|
T Consensus       156 ~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~-----G-~G~skk~AEq~AA~~al~~l  229 (235)
T COG0571         156 AGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGT-----G-KGRSKKEAEQAAAEQALKKL  229 (235)
T ss_pred             ccccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEE-----e-cccCHHHHHHHHHHHHHHHh
Confidence            34445899999999999999999999999999999999999999999988765     4 35999999999999999988


Q ss_pred             Hh
Q 032079          135 EH  136 (147)
Q Consensus       135 ~~  136 (147)
                      ..
T Consensus       230 ~~  231 (235)
T COG0571         230 GV  231 (235)
T ss_pred             cc
Confidence            64

>PRK14718 ribonuclease III; Provisional

Probab=99.69  E-value=9.2e-17  Score=143.05  Aligned_cols=72  Identities=19%  Similarity=0.248  Sum_probs=65.0

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEec-cccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESL-NTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~-~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      ...||||+||||||++++.+|.|+++.++||+|.+.|++.|+|++..+ +.     | .|+|||+|||.||+.||..|+
T Consensus       149 ~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~-----G-~G~SKKeAEQ~AAk~AL~kL~  221 (467)
T PRK14718        149 LGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVS-----G-SGASRRAAEQAAAKKALDEVT  221 (467)
T ss_pred             cccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEE-----E-EcCCHHHHHHHHHHHHHHHhc
Confidence            457999999999999999999999999999999999999999998644 33     4 359999999999999999997

>PRK12372 ribonuclease III; Reviewed

Probab=99.66  E-value=3.3e-16  Score=138.19  Aligned_cols=73  Identities=19%  Similarity=0.228  Sum_probs=65.3

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEec-cccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESL-NTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~-~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ...||||+||||||++++.+|.|+++.++||+|++.|+|.|+|++..+ +.     | .|.|||+|||.||+.||..|..
T Consensus       149 ~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~-----G-~G~SKKeAEQ~AAr~AL~kL~~  222 (413)
T PRK12372        149 LGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVS-----G-SGASRRAAEQAAAKKALDEVMA  222 (413)
T ss_pred             ccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEE-----E-EeCCHHHHHHHHHHHHHHHHhc
Confidence            356999999999999999999999999999999999999999998543 33     3 3599999999999999999984

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.66  E-value=6.3e-16  Score=101.26  Aligned_cols=66  Identities=35%  Similarity=0.469  Sum_probs=55.2

Q ss_pred             hhHHHHHHHHhcCCCCCeEEEeceeCCCCC-ceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079           62 AKSKLHEICAANHWKPPSFDCCQEEGPCYR-KLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        62 ~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~-k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      ||+.|+||||++++.+ .|+.+...|++|. +.|+|+|.|+|..++.+   .|   +|||+|++.||+.||..|
T Consensus         1 ~~~~L~e~~~~~~~~~-~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g---~g---~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen    1 PKSRLNEYCQKNKFPP-PYYYIEEEGPSHHRPRFICTVYIDGKEYGEG---EG---SSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             HHHHHHHHHHHCTSSE-EEEEEEEESSSSSSEEEEEEEEETTEEEEEE---EE---SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCC-CEEEEEEeCCCCCCceEEEEEEECCEEEeEe---cc---CCHHHHHHHHHHHHHHhC
Confidence            7999999999999765 5555566676665 99999999999988643   44   899999999999999876

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>PRK00102 rnc ribonuclease III; Reviewed

Probab=99.60  E-value=3.9e-15  Score=119.18  Aligned_cols=75  Identities=32%  Similarity=0.393  Sum_probs=67.1

Q ss_pred             CCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           56 APNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        56 ~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      .....|||+.|+||||++++..|.|+++.++|+.|.+.|+|.|++++..++.     | .|+|||+||+.||+.||..|+
T Consensus       154 ~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-----g-~g~skk~Ae~~AA~~Al~~l~  227 (229)
T PRK00102        154 GDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGE-----G-TGSSKKEAEQAAAKQALKKLK  227 (229)
T ss_pred             ccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEE-----e-eeCCHHHHHHHHHHHHHHHHh
Confidence            3456799999999999999999999999889999999999999999988764     3 349999999999999999986


Q ss_pred             h
Q 032079          136 H  136 (147)
Q Consensus       136 ~  136 (147)
                      .
T Consensus       228 ~  228 (229)
T PRK00102        228 E  228 (229)
T ss_pred             h
Confidence            3

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=99.55  E-value=1.8e-14  Score=114.26  Aligned_cols=71  Identities=32%  Similarity=0.344  Sum_probs=64.3

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      ...|||+.|+||||++++..|.|+++.+.|++|.+.|+|.|++++..++.     | .|.|||+|++.||+.||..|
T Consensus       150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~-----g-~g~skk~A~~~AA~~Al~~l  220 (220)
T TIGR02191       150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGE-----G-KGKSKKEAEQNAAKAALEKL  220 (220)
T ss_pred             ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEE-----e-eeCCHHHHHHHHHHHHHHhC
Confidence            57799999999999999989999998888999999999999999988764     3 25999999999999999865

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.48  E-value=1.1e-13  Score=119.53  Aligned_cols=72  Identities=29%  Similarity=0.396  Sum_probs=64.5

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ...||.++|||+||+++|.+|.|+++.+.|+.|.+.|++.|.|++..-      .| .|+|||.|+++||+++|..|.-
T Consensus       140 ~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~~------~G-kG~sKKiAKRnAAeamLe~l~~  211 (339)
T KOG3732|consen  140 QVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFTE------EG-KGPSKKIAKRNAAEAMLESLGF  211 (339)
T ss_pred             cccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecceee------ec-CCchHHHHHHHHHHHHHHHhcc
Confidence            467999999999999999999999999999999999999999987431      35 3599999999999999998863

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.46  E-value=3.5e-13  Score=116.35  Aligned_cols=73  Identities=32%  Similarity=0.334  Sum_probs=66.1

Q ss_pred             CChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 032079           60 VSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLGY  139 (147)
Q Consensus        60 ~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~g~  139 (147)
                      +++.|.|||+|.+++. .|.|++++++||.|.+.|+++|.|+.      ++|.| .|+|||.|++.||..+|..|++...
T Consensus        38 KS~IS~l~E~~~r~~~-~v~fevl~eeGp~H~~~fv~rvtvg~------~~a~G-eG~sKK~AKh~AA~~~L~~lk~l~~  109 (339)
T KOG3732|consen   38 KSPISLLQEYGLRRGL-TPVYEVLREEGPPHMPNFVFRVTVGE------ITATG-EGKSKKLAKHRAAEALLKELKKLPP  109 (339)
T ss_pred             CChHHHHHHHHHHhCC-CcceeeeeccCCccCCCeEEEEEEee------eEEec-CCCchhHHHHHHHHHHHHHHhcCCC
Confidence            8999999999999986 68999999999999999999999984      34567 4699999999999999999999876


Q ss_pred             C
Q 032079          140 F  140 (147)
Q Consensus       140 ~  140 (147)
                      +
T Consensus       110 l  110 (339)
T KOG3732|consen  110 L  110 (339)
T ss_pred             c
Confidence            6

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=98.55  E-value=2.6e-07  Score=83.08  Aligned_cols=73  Identities=29%  Similarity=0.358  Sum_probs=64.2

Q ss_pred             CCCCChhHHHHHHHHhcCCC------CCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHH
Q 032079           57 PNKVSAKSKLHEICAANHWK------PPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGA  130 (147)
Q Consensus        57 ~~~~d~KS~LQE~~Qk~~~~------~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~A  130 (147)
                      ..-.|+|+.||.+|-.....      +|.|.+....||.+.+.|+|.|+++|+.+++     | .|++.|.|+-.||+.|
T Consensus       424 q~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat-----~-~G~nik~Ae~rAA~~A  497 (533)
T KOG1817|consen  424 QDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLAT-----G-VGSNIKQAEMRAAMQA  497 (533)
T ss_pred             hhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEee-----c-cCchHhHHHHHHHHHH
Confidence            33468999999999987664      7889999999999999999999999999875     3 3599999999999999


Q ss_pred             HHHHH
Q 032079          131 LWYLE  135 (147)
Q Consensus       131 L~~L~  135 (147)
                      |+.+.
T Consensus       498 Le~~~  502 (533)
T KOG1817|consen  498 LENLK  502 (533)
T ss_pred             HHHHH
Confidence            99886

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=98.36  E-value=1.4e-06  Score=79.85  Aligned_cols=67  Identities=30%  Similarity=0.323  Sum_probs=60.1

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      .++|.+.|+|+.+     -|.|.++.+.||.|.+.|.+.|.|+|+.+.      |. |+|||+|++.||..||..|...
T Consensus        89 ~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~------~~-~~sKk~ak~~aa~~al~~l~~~  155 (542)
T KOG2777|consen   89 GKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFE------GG-GRSKKEAKQEAAMAALQVLFKI  155 (542)
T ss_pred             cCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEcc------CC-CcchHHHHHHHHHHHHHHHHhc
Confidence            7799999999999     468999999999999999999999999875      32 6999999999999999998643

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=2.1e-05  Score=68.05  Aligned_cols=90  Identities=21%  Similarity=0.236  Sum_probs=75.1

Q ss_pred             CcccccccccccccCCCCCCCCChhHHHHHHHHhcCCCCCeEEEeceeCC-CCCceEEEEEEECCEeccccceeecCCCC
Q 032079           39 YDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGP-CYRKLFTFKVTFEIESLNTILECFGAPQS  117 (147)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP-~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~  117 (147)
                      ..+.+|-+.++..-+..--+..+|...|-++|++++..-|+|+++.+.|. .-.+.|.|.++-+.+.+|.     | .|.
T Consensus       211 ~dFI~~qi~~k~L~~~~m~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGq-----G-~Ge  284 (333)
T KOG3769|consen  211 RDFINDQILSKDLDPREMWQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQ-----G-QGE  284 (333)
T ss_pred             HHHHHHHhhhhccchHhhccccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhcc-----C-cch
Confidence            44566666666665555566789999999999999999999999999884 5789999999999888764     4 459


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 032079          118 KKKTAAEHAAEGALWYL  134 (147)
Q Consensus       118 SKK~AEq~AA~~AL~~L  134 (147)
                      |=|.|++.||..||..|
T Consensus       285 sl~~A~e~AA~dAL~k~  301 (333)
T KOG3769|consen  285 SLKLAEEQAARDALIKL  301 (333)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999876

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=97.64  E-value=0.0002  Score=51.02  Aligned_cols=70  Identities=26%  Similarity=0.258  Sum_probs=46.5

Q ss_pred             hHHHHHHHHhcCC-----CCCeEEEeceeCCCCCceEEEEEEECCE-eccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           63 KSKLHEICAANHW-----KPPSFDCCQEEGPCYRKLFTFKVTFEIE-SLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        63 KS~LQE~~Qk~~~-----~~P~Yel~~e~GP~H~k~Ftv~V~V~~~-~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      .+.|+.||+....     ..|.|++....+     .|.++|.+... .+..   ..|....+|+.|++.||-.|...|.+
T Consensus         2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-----~~~c~v~LP~~~pi~~---i~g~~~~sk~~AK~sAAf~Ac~~L~~   73 (90)
T PF03368_consen    2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS-----GFICTVILPINSPIRS---IEGPPMRSKKLAKRSAAFEACKKLHE   73 (90)
T ss_dssp             HHHHHHHHTTSSS-TT--SS-EEEEEE--G------EEEEEE--TT-SS-----EEEE--SSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCccCCceEEEEEcCC-----cEEEEEECCCCCCCCe---EEccccccHHHHHHHHHHHHHHHHHH
Confidence            4789999998543     468999765544     99999999742 1212   25666799999999999999999999


Q ss_pred             CCCC
Q 032079          137 LGYF  140 (147)
Q Consensus       137 ~g~~  140 (147)
                      .|.|
T Consensus        74 ~g~l   77 (90)
T PF03368_consen   74 AGEL   77 (90)
T ss_dssp             H-S-
T ss_pred             cCCC
Confidence            9976

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=97.27  E-value=0.00027  Score=64.84  Aligned_cols=68  Identities=21%  Similarity=0.125  Sum_probs=57.4

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      .++..=.|+||.|.-....|+|+..+  .....-.|...|.+++-.||.|   .   |.|||.|+..||+.+|..|
T Consensus       374 gks~vCiLhEy~q~~lk~~pvyef~e--~~n~stpysa~v~~d~~~yGsG---~---g~sKK~Ak~~AAR~tLeiL  441 (650)
T KOG4334|consen  374 GKSKVCILHEYAQQCLKSLPVYEFAE--NDNNSTPYSAGVLPDLFPYGSG---V---GASKKTAKLVAARDTLEIL  441 (650)
T ss_pred             CceeeehHHHHHHHHhhhcceeehhh--ccCCCCcccccccccccccccc---c---ccchHHHHHHHHHHHHHHh
Confidence            34566789999999999999998543  4567788999999999888863   3   4999999999999999987

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=96.95  E-value=0.0015  Score=63.75  Aligned_cols=80  Identities=26%  Similarity=0.300  Sum_probs=67.5

Q ss_pred             CChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 032079           60 VSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLGY  139 (147)
Q Consensus        60 ~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~g~  139 (147)
                      .|-|+.|..||-|+... |.|.+ ..+|++..+.|.|.|.+.+--+..    .| ....||.|+..||+.-...|...|.
T Consensus         1 ~d~k~fly~~~~k~~~~-p~~d~-~~~~~~~rqrf~ce~~~~~~~~~~----~~-~stnkKda~knac~dfv~ylvr~Gk   73 (1282)
T KOG0921|consen    1 RDVKEFLYAWLGKNKYG-PTYDI-RSEGRKGRQRFLCEVRVEGFGYTA----VG-NSTNKKDAATNAAQDFCQYLVREGK   73 (1282)
T ss_pred             CcHHHHHHHHHhhhccC-cceeh-hhhcccchhheeeeeeccCCccee----ee-cccccchhhHHHHHHHHHHhhhhcc
Confidence            36799999999999886 89995 678999999999999998865542    44 3477999999999999999999998


Q ss_pred             CCccccc
Q 032079          140 FPIRKLK  146 (147)
Q Consensus       140 ~p~~~~~  146 (147)
                      ++-.+++
T Consensus        74 ~n~~d~p   80 (1282)
T KOG0921|consen   74 MQQSDIP   80 (1282)
T ss_pred             ccccCCc
Confidence            8766553

>PF14954 LIX1: Limb expression 1

Probab=92.57  E-value=0.41  Score=40.33  Aligned_cols=72  Identities=24%  Similarity=0.141  Sum_probs=48.0

Q ss_pred             CCCCCChhHHHHHHHHh---cCCCCCeEE-EeceeCCCCCceEEEEEEECCEeccccceeecCC--CCCHHHHHHHHHHH
Q 032079           56 APNKVSAKSKLHEICAA---NHWKPPSFD-CCQEEGPCYRKLFTFKVTFEIESLNTILECFGAP--QSKKKTAAEHAAEG  129 (147)
Q Consensus        56 ~~~~~d~KS~LQE~~Qk---~~~~~P~Ye-l~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~--g~SKK~AEq~AA~~  129 (147)
                      .....|....|||+=|.   ++-.++.=. ++-+..|...+.|+|-|++.|      ..|+|..  =++|-+|.+.||+-
T Consensus        17 ~~~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPG------GSCFGnfq~C~tkAEARR~AAKi   90 (252)
T PF14954_consen   17 GYGDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPG------GSCFGNFQNCPTKAEARRSAAKI   90 (252)
T ss_pred             ccccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCC------CCccCccccCCcHHHHHhhhHHH
Confidence            44556788999996543   222222211 123456888899999999965      2345422  27899999999999


Q ss_pred             HHHH
Q 032079          130 ALWY  133 (147)
Q Consensus       130 AL~~  133 (147)
                      ||.-
T Consensus        91 ALmN   94 (252)
T PF14954_consen   91 ALMN   94 (252)
T ss_pred             HHHH
Confidence            9863

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=91.47  E-value=0.087  Score=47.92  Aligned_cols=65  Identities=26%  Similarity=0.269  Sum_probs=54.6

Q ss_pred             CChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHH
Q 032079           60 VSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWY  133 (147)
Q Consensus        60 ~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~  133 (147)
                      ..+|..|..||-+.+..-|.|+++..    -.+.|...+.++|..|...     -+.+++|-|+|.||..+|..
T Consensus       375 ~~~k~~l~~~~~~~~~~~~~ye~~~~----~d~lf~si~~~~~~~~~ss-----i~~~n~k~aeq~aa~~~l~~  439 (477)
T KOG2334|consen  375 DTPKMVLADLCVKTKANGPVYETVQR----TDKLFSSIATARGQKYNSS-----IWSPNKKSAEQDAAIVALRK  439 (477)
T ss_pred             CCHHHHHHHhhhhhcCCCcchhhhhh----hhhhhHHHhhhhhhhhhcc-----ccCcchhhHHHHHHHHHHHh
Confidence            46999999999999999999998764    4689999999999998753     33699999999999666544

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=89.11  E-value=0.24  Score=47.51  Aligned_cols=66  Identities=23%  Similarity=0.177  Sum_probs=50.1

Q ss_pred             ChhHHHHHHHHhcCCCCCeEE------EeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079           61 SAKSKLHEICAANHWKPPSFD------CCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        61 d~KS~LQE~~Qk~~~~~P~Ye------l~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      |+-..|.-+=|.++.  ..|+      ++..+||.|.++|+++|.+++..+..    .   |+|||.|.-.||.   +.|
T Consensus       371 d~nak~mhl~grRhr--LQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~a----~---gps~~~~~wh~~~---k~l  438 (816)
T KOG3792|consen  371 DPNAKEMHLKGRRHR--LQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAEA----E---GPSKKTAKWHAAR---KRL  438 (816)
T ss_pred             CcchHHhhhhccccc--ceeccccCCCceeccCCcccchhhhhhhhcCCcccc----C---CcccccchHHHHH---HHh
Confidence            455555555555543  4799      88999999999999999999976542    3   4999999999995   456


Q ss_pred             HhCC
Q 032079          135 EHLG  138 (147)
Q Consensus       135 ~~~g  138 (147)
                      +++|
T Consensus       439 q~~~  442 (816)
T KOG3792|consen  439 QNEG  442 (816)
T ss_pred             hccC
Confidence            6665

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=87.06  E-value=0.44  Score=44.34  Aligned_cols=51  Identities=27%  Similarity=0.300  Sum_probs=42.8

Q ss_pred             CCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           74 HWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        74 ~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      .|.-+.|..+.+.||-|.+.|.+.|.|++..        +   . ||.|.+.||+.|+..+..
T Consensus         6 ~~~~~~~~~~~q~~p~~~p~~~~~~~v~~~~--------~---~-~k~~~~~~a~~~~~~~~~   56 (542)
T KOG2777|consen    6 IAPGLQYNLVSQTGPVHAPLFPFSVEVNGQE--------F---P-KKKAKQRAAEKALRVFLQ   56 (542)
T ss_pred             cccccccccccccCCCCCCcccceEEecccc--------c---c-cccccchhhhHHHHHHhh
Confidence            3444789999999999999999999999853        3   3 899999999999887654

>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]

Probab=82.77  E-value=1.1  Score=46.49  Aligned_cols=44  Identities=16%  Similarity=0.078  Sum_probs=35.8

Q ss_pred             CCCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEE
Q 032079           55 GAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKV   98 (147)
Q Consensus        55 ~~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V   98 (147)
                      ........++.+.+.|-...|++|.|..+++.++.|-.+|...+
T Consensus      1509 iagai~~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~ 1552 (1606)
T KOG0701|consen 1509 IAGAIKLDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGK 1552 (1606)
T ss_pred             ccceeecCcccccchHhhcCcCCCCccchhhhccccceeeccch
Confidence            34445667779999999999999999999999999977765443

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=82.40  E-value=0.91  Score=43.74  Aligned_cols=49  Identities=20%  Similarity=-0.065  Sum_probs=39.9

Q ss_pred             eEEEeceeC-CCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079           79 SFDCCQEEG-PCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        79 ~Yel~~e~G-P~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      +|++..++| -+|.++|+..|.+.|..+      .| .+.+++.|.+-||-.|++.+
T Consensus       520 k~El~set~~gs~~~R~v~gV~rvG~~a------kG-~~~~gd~a~~~a~Lca~~pt  569 (816)
T KOG3792|consen  520 KYELPSETGTGSHDKRFVKGVMRVGILA------KG-LLLNGDRAVELALLCAEKPT  569 (816)
T ss_pred             ceecccccCCCCCCceeeeeeeeeehhh------cc-ccccchHHHHHHHHhccCcc
Confidence            799998888 899999999999988654      34 35889999999986665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
2lrs_A	71	The Second Dsrbd Domain From A. Thaliana Dicer-like		8e-06

>pdb|2LRS|A Chain A, The Second Dsrbd Domain From A. Thaliana Dicer-like 1 Length = 71

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 67  HEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHA 126
           ++IC   +W  PS+ C +E GP + K FTF V           EC G P    K A + A
Sbjct: 1   NDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSA 60
Query: 127 A 127
           A
Sbjct: 61  A 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	3e-10
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	1e-09
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	8e-08
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	8e-08
2dix_A	84	Interferon-inducible double stranded RNA- dependen	8e-08
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	1e-07
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	6e-07
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	7e-07
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	1e-06
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	2e-06
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	3e-06
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	5e-06
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	6e-06
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	2e-05
1uil_A	113	Double-stranded RNA-binding motif; structural geno	1e-04
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	1e-04
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	2e-04
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	2e-04
1x49_A	97	Interferon-induced, double-stranded RNA- activated	3e-04
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	5e-04
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	5e-04
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	6e-04
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	6e-04

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 52.7 bits (127), Expect = 3e-10
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 55  GAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGA 114
           G+       S+L +I  A   K P +    E G   R+ F  +V   + +        G 
Sbjct: 1   GSSGSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVK--VGNEVAT----GT 54

Query: 115 PQSKKKTAAE-HAAEGALWYLEHLGYFPIR 143
             +KK   A+ +AAE  L  L +     ++
Sbjct: 55  GPNKKI--AKKNAAEAMLLQLGYKASTSLQ 82

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 50.8 bits (122), Expect = 1e-09
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 61  SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKK 120
           S  S++HEI    +     F   +EEGP + K F           + + E  G   + KK
Sbjct: 8   SPISQVHEIGIKRNM-TVHFKVLREEGPAHMKNFITACIVG----SIVTEGEG---NGKK 59

Query: 121 TAAEHAAEGALWYLEHL 137
            + + AAE  L  L+ L
Sbjct: 60  VSKKRAAEKMLVELQKL 76

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 45.6 bits (109), Expect = 8e-08
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 63  KSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTA 122
              L E+     W+ P +   QE GP +++ FT      +E+        G+  SK+   
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCR--VETFVET----GSGTSKQV-- 54

Query: 123 AE-HAAEGALWYLE 135
           A+  AAE  L   +
Sbjct: 55  AKRVAAEKLLTKFK 68

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 46.2 bits (110), Expect = 8e-08
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 48  EKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNT 107
              S              L E+     W+ P +   QE GP +RK FT      +E    
Sbjct: 4   HHHSSGLVPRGS-HEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCR--VERFIE 60

Query: 108 ILECFGAPQSKKKTAAEHAAEGALWYLEHL 137
           I    G+  SKK  A  +AA   L  +  +
Sbjct: 61  I----GSGTSKKL-AKRNAAAKMLLRVHTV 85

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 46.2 bits (110), Expect = 8e-08
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 11/89 (12%)

Query: 54  EGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFG 113
            G+  K +    LHE         P ++C + +   +   FTF+VT  +  +       G
Sbjct: 3   SGSSGK-TPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVT--VGDITCT----G 54

Query: 114 APQSKKKTAAEH-AAEGALWYLEHLGYFP 141
              SKK   A+H AAE A+  L+     P
Sbjct: 55  EGTSKKL--AKHRAAEAAINILKANASGP 81

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 63  KSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTA 122
           K+ L E     ++  P + C + E       FT  V              GA    KK A
Sbjct: 7   KNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKY------TGAATRTKKDA 60

Query: 123 AEHAAEGALWYLE 135
              A   AL  ++
Sbjct: 61  EISAGRTALLAIQ 73

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 44.9 bits (106), Expect = 6e-07
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 8/78 (10%)

Query: 57  PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ 116
           P +++ K  L E C       P ++  Q       ++F   VT   +   +         
Sbjct: 23  PPQITPKMCLLEWCRREKLPQPVYETVQRTID---RMFCSVVTVAEQKYQS-----TLWD 74

Query: 117 SKKKTAAEHAAEGALWYL 134
             KK A + AA   L   
Sbjct: 75  KSKKLAEQTAAIVCLRSQ 92

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 43.8 bits (104), Expect = 7e-07
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 58  NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQS 117
           ++ +    L E+     W+ P +   QE GP +RK FT      +E    I    G+  S
Sbjct: 14  SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCR--VERFIEI----GSGTS 67

Query: 118 KKKTAAE-HAAEGAL 131
           KK   A+ +AA   L
Sbjct: 68  KKL--AKRNAAAKML 80

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 54  EGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFG 113
            G  N    KS+L E         P ++   +EGP ++ LF   V  +    N++     
Sbjct: 11  SGVSNCYVFKSRLQEYAQKYKLPTPVYE-IVKEGPSHKSLFQSTVILDGVRYNSL----P 65

Query: 114 APQSKKKTAAEH-AAEGALWYLEH 136
              ++K   AE  AAE AL  L  
Sbjct: 66  GFFNRKA--AEQSAAEVALRELAK 87

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 62  AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKT 121
            KS+L E         P ++   +EGP ++ LF   V  +               ++K  
Sbjct: 5   FKSRLQEYAQKYKLPTPVYE-IVKEGPSHKSLFQSTVILD----GVRYNSLPGFFNRKA- 58

Query: 122 AAEH-AAEGAL 131
            AE  AAE AL
Sbjct: 59  -AEQSAAEVAL 68

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 63  KSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTA 122
             +L+            +      GP + + FTF+V  +          F   + + K  
Sbjct: 16  MEELNTYRQKQGVVLK-YQELPNSGPPHDRRFTFQVIID-------GREFPEGEGRSKKE 67

Query: 123 AEH-AAEGALWYLEH 136
           A++ AA+ A+  L  
Sbjct: 68  AKNAAAKLAVEILNK 82

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 41.5 bits (98), Expect = 5e-06
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 11/83 (13%)

Query: 54  EGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFG 113
              P K +  S L E       K P +D  + EG  ++  FTF+VT  +   +      G
Sbjct: 9   AANPGK-TPISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVT--VGDTSCT----G 60

Query: 114 APQSKKKTAAEH-AAEGALWYLE 135
              SKK   A+H AAE AL +L+
Sbjct: 61  QGPSKKA--AKHKAAEVALKHLK 81

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 41.4 bits (97), Expect = 6e-06
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 62  AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKT 121
            K+ L+  C       P+++     G   R+ F  +V   +E  N          + KK 
Sbjct: 8   IKNFLYAWCGKRKM-TPAYEIR-AVGNKNRQKFMCEV--RVEGFNYAGMGNS---TNKKD 60

Query: 122 AAEHAAEGALWYLEHLGY 139
           A  +AA   + YL  +  
Sbjct: 61  AQSNAARDFVNYLVRINE 78

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 57  PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ 116
           PN  S    LHE         P ++  + E P   + F   VT     ++ +    G   
Sbjct: 13  PNGKSEVCILHEYMQRVLKVRPVYNFFECENP--SEPFGASVT-----IDGVTYGSGTAS 65

Query: 117 SKKKTAAEHAAEGAL 131
           SKK  A   AA   L
Sbjct: 66  SKKL-AKNKAARATL 79

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A Length = 113

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 61  SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKK 120
           +AK++L++       +        + GP + + F  ++T  I+ L   +       + KK
Sbjct: 27  NAKARLNQYFQKEKIQGEYKY--TQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSN-KK 83

Query: 121 TAAEHAAEGALWYLEHLG 138
            AA+  A   +  L HLG
Sbjct: 84  LAAQSCALSLVRQLYHLG 101

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 12/75 (16%)

Query: 57  PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ 116
           P+  +    L+E+          +D   E G  + K F   V  +        E  G   
Sbjct: 1   PSGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVD----GQFFEGSG--- 48

Query: 117 SKKKTAAEHAAEGAL 131
             KK A   AA+ AL
Sbjct: 49  RNKKLAKARAAQSAL 63

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 57  PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ 116
           PN  S    LHE         P ++  + E P   + F   VT     ++ +    G   
Sbjct: 19  PNGKSEVCILHEYMQRVLKVRPVYNFFECENP--SEPFGASVT-----IDGVTYGSGTAS 71

Query: 117 SKKKTAAEHAAEGAL 131
           SKK  A   AA   L
Sbjct: 72  SKKL-AKNKAARATL 85

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 62  AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKT 121
            K+ L EI  + H  PP +   + E     ++F  +V    +++ T     G  ++KK+ 
Sbjct: 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIAT-----GKGRTKKE- 234

Query: 122 AAE-HAAEGALWYLEH 136
            AE  AA  A   L  
Sbjct: 235 -AEKEAARIAYEKLLK 249

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 63  KSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTA 122
             KL++    +     ++      GP + + FTF+V  + +            +SK++ A
Sbjct: 17  MDKLNKYRQMHGV-AITYKELSTSGPPHDRRFTFQVLIDEKEFPE-----AKGRSKQE-A 69

Query: 123 AEHAAEGALWYLE 135
              AA+ A+  L+
Sbjct: 70  RNAAAKLAVDILD 82

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 47  YEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLN 106
             ++  +  A + ++A  +L++I          +    + GP +  +FT  V  +     
Sbjct: 6   SGRKILDSKAIDLMNALMRLNQI-----RPGLQYKLLSQSGPVHAPVFTMSVDVD----G 56

Query: 107 TILECFGAPQSKKKTAAEHAAEGAL 131
           T  E  G     KKTA  H A   L
Sbjct: 57  TTYEASG---PSKKTAKLHVAVKVL 78

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 16/107 (14%)

Query: 37  SGYDYED-----DRFYEKESKNEGAPNKVS--AKSKLHEICAANHWKPPSFDCCQEEGPC 89
           SG D         + ++++  +     +V    K+ L EI      + P +     EGP 
Sbjct: 120 SGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPH 179

Query: 90  YRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAE-HAAEGALWYLE 135
           ++K F  +   +I+   T+    G  +SKK+  AE  AAE  +  LE
Sbjct: 180 HKKKFIVEA--KIKEYRTL----GEGKSKKE--AEQRAAEELIKLLE 218

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 62  AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKT 121
            K+KL EI      + P ++  +  GP + K F   +  + + L           SKK+ 
Sbjct: 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELAR-----AIAGSKKE- 232

Query: 122 AAE-HAAEGAL 131
            A+  AA+ AL
Sbjct: 233 -AQQMAAKIAL 242

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 35.3 bits (82), Expect = 6e-04
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 12/71 (16%)

Query: 61  SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKK 120
           +   +L+E           ++   E G  + K F  +V  +        +  G   S KK
Sbjct: 8   NPVMELNEKRRG-----LKYELISETGGSHDKRFVMEVEVD----GQKFQGAG---SNKK 55

Query: 121 TAAEHAAEGAL 131
            A  +AA  AL
Sbjct: 56  VAKAYAALAAL 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.9
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.9
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.9
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.89
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.89
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.89
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.88
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.88
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.88
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.88
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.87
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.87
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.87
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.86
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.85
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.85
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.84
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.84
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.84
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.83
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.83
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.82
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.8
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.8
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.78
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.75
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.74
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.73
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.71
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	99.68
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.65
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.64
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.6
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.57
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.56
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	99.39
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	99.14
2kou_A	102	Dicer-like protein 4; ATP-binding, endonuclease, h	97.32
2db2_A	119	KIAA0890 protein; DSRM domain, structural genomics	94.63
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	92.85

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.90  E-value=4.3e-24  Score=146.52  Aligned_cols=72  Identities=21%  Similarity=0.188  Sum_probs=65.7

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ..||||.||||||++++.+|.|+++.++||+|++.|+|.|.|+|..++.     | .|+|||+|||.||+.||..|..
T Consensus         3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~-----G-~G~sKK~Aeq~AA~~al~~L~~   74 (76)
T 3adj_A            3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTG-----A-ATRTKKDAEISAGRTALLAIQS   74 (76)
T ss_dssp             CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEEC-----C-CBSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEE-----e-ccCCHHHHHHHHHHHHHHHHhh
Confidence            3589999999999999999999999999999999999999999987764     4 3599999999999999999864

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.90  E-value=1.1e-23  Score=143.19  Aligned_cols=70  Identities=30%  Similarity=0.375  Sum_probs=63.6

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCC-CCHHHHHHHHHHHHHHHHH
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ-SKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g-~SKK~AEq~AA~~AL~~L~  135 (147)
                      ..||||+||||||++++.+|.|+++.+ ||+|.+.|+|.|+|+|..++.     | .| +|||+|||.||+.||..|.
T Consensus         2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~-Gp~h~~~F~~~v~v~g~~~~~-----G-~G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A            2 SHVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNS-----L-PGFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             CCSHHHHHHHHHHHTTCCCCEEEEEEE-SSTTSCEEEEEEEETTEEEEC-----C-SCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHcCCCCCEEEEEeE-CCCCCCeEEEEEEECCEEEEe-----e-eccCCHHHHHHHHHHHHHHHhh
Confidence            369999999999999999999999875 999999999999999988764     4 36 8999999999999999885

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.90  E-value=2e-23  Score=147.74  Aligned_cols=75  Identities=27%  Similarity=0.383  Sum_probs=66.1

Q ss_pred             CCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           57 PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        57 ~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ....||||+||||||++++.+|.|+++.++||+|.+.|+|.|+|++. ++.+   .   |+|||+|||.||+.||..|..
T Consensus        12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G---~---G~SKK~Aeq~AA~~AL~~L~~   84 (88)
T 3adl_A           12 PRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG---S---GTSKKLAKRNAAAKMLLRVHT   84 (88)
T ss_dssp             CTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEE---E---ESSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEE---e---eCCHHHHHHHHHHHHHHHHHc
Confidence            34579999999999999999999999999999999999999999996 6543   4   499999999999999999975


Q ss_pred             CC
Q 032079          137 LG  138 (147)
Q Consensus       137 ~g  138 (147)
                      .+
T Consensus        85 ~p   86 (88)
T 3adl_A           85 VP   86 (88)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.89  E-value=1.4e-23  Score=140.99  Aligned_cols=68  Identities=26%  Similarity=0.374  Sum_probs=62.4

Q ss_pred             ChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           61 SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        61 d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      .|||.||||||+++|.+|.|+++.++||+|++.|+|.|.|+|. ++.+   .   |+|||+|||.||+.||..|.
T Consensus         1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G---~---G~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A            1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETG---S---GTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE---E---ESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEe---e---cCCHHHHHHHHHHHHHHHHh
Confidence            3899999999999999999999999999999999999999997 6643   3   49999999999999999986

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.89  E-value=3.4e-23  Score=146.71  Aligned_cols=71  Identities=28%  Similarity=0.419  Sum_probs=65.1

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ..|||++||||||+++|.+|.|+++.++||+|.+.|+|.|+|++. ++.+   .|   +|||+|||.||+.||..|..
T Consensus        15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G---~G---~SKK~Aeq~AA~~AL~~L~~   85 (89)
T 2cpn_A           15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG---SG---TSKKLAKRNAAAKMLLRVSG   85 (89)
T ss_dssp             CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEE---EE---SSHHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEe---ee---CCHHHHHHHHHHHHHHHHHh
Confidence            579999999999999999999999999999999999999999997 6543   44   99999999999999999964

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.89  E-value=7.2e-23  Score=145.05  Aligned_cols=72  Identities=29%  Similarity=0.269  Sum_probs=64.9

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ...||||+||||||++++.+|.|+++.++||+|++.|+|.|+|++. ++.+   .   |+|||+|||.||+.||..|..
T Consensus         4 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G---~---G~SKK~Aeq~AA~~AL~~L~~   75 (89)
T 1uhz_A            4 GSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATG---T---GPNKKIAKKNAAEAMLLQLGY   75 (89)
T ss_dssp             SSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEE---E---ESSHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEE---e---eCCHHHHHHHHHHHHHHHHhc
Confidence            3569999999999999999999999999999999999999999996 6543   3   499999999999999999964

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.88  E-value=1.4e-22  Score=141.78  Aligned_cols=75  Identities=27%  Similarity=0.291  Sum_probs=66.4

Q ss_pred             CCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           57 PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        57 ~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ....||||+||||||+++ ..|.|+++.++||+|++.|+|.|+|++ .++.     | .|+|||+|||.||+.||..|..
T Consensus         5 ~~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~-----G-~G~SKK~Aeq~AA~~aL~~L~~   76 (84)
T 2dix_A            5 SSGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCT-----G-EGTSKKLAKHRAAEAAINILKA   76 (84)
T ss_dssp             CCCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEE-----E-CSSCTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEE-----e-eeCCHHHHHHHHHHHHHHHHhc
Confidence            345799999999999998 689999999999999999999999999 6654     4 3599999999999999999986


Q ss_pred             CCC
Q 032079          137 LGY  139 (147)
Q Consensus       137 ~g~  139 (147)
                      ...
T Consensus        77 ~~~   79 (84)
T 2dix_A           77 NAS   79 (84)
T ss_dssp             TCC
T ss_pred             ccc
Confidence            554

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.88  E-value=3.8e-23  Score=145.40  Aligned_cols=71  Identities=25%  Similarity=0.279  Sum_probs=63.8

Q ss_pred             CChhHHHHHHHHh-----cCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079           60 VSAKSKLHEICAA-----NHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        60 ~d~KS~LQE~~Qk-----~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      .||||+||||||+     +++.+|.|+++.++||+|.+.|+|.|+|+|..++.+   .|   +|||+|||.||+.||..|
T Consensus         1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G---~G---~SKK~AEq~AA~~AL~~L   74 (85)
T 2khx_A            1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCG---KG---PSIQQAEMGAAMDALEKY   74 (85)
T ss_dssp             CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCE---EE---SSHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEE---ee---CCHHHHHHHHHHHHHHHH
Confidence            4899999999998     567899999999999999999999999999888753   44   999999999999999877


Q ss_pred             Hh
Q 032079          135 EH  136 (147)
Q Consensus       135 ~~  136 (147)
                      ..
T Consensus        75 ~~   76 (85)
T 2khx_A           75 NF   76 (85)
T ss_dssp             CS
T ss_pred             hH
Confidence            54

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.88  E-value=7.6e-23  Score=147.68  Aligned_cols=78  Identities=21%  Similarity=0.218  Sum_probs=68.8

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECC-EeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEI-ESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~-~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      ..||||+||||||++ +.+|.|++ .++||+|++.|+|.|+|++ ..++.+   .|   +|||+|||.||+.||..|...
T Consensus         5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~-~~~Gp~H~~~F~~~V~v~g~~~~~~G---~G---~SKK~Aeq~AA~~AL~~L~~~   76 (99)
T 1whq_A            5 SSGIKNFLYAWCGKR-KMTPAYEI-RAVGNKNRQKFMCEVRVEGFNYAGMG---NS---TNKKDAQSNAARDFVNYLVRI   76 (99)
T ss_dssp             CCSSHHHHHHHHHHT-TCCCEEEE-EEEECSSSEEEEEEEECTTCSCCEEE---EE---SSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHC-CCCCeEEE-eeecCCCCCeEEEEEEECCeEEEEEe---cc---CCHHHHHHHHHHHHHHHHHhh
Confidence            469999999999999 89999998 8899999999999999999 566643   44   999999999999999999988


Q ss_pred             CCCCccc
Q 032079          138 GYFPIRK  144 (147)
Q Consensus       138 g~~p~~~  144 (147)
                      +.+...+
T Consensus        77 ~~~~~~~   83 (99)
T 1whq_A           77 NEVKSEE   83 (99)
T ss_dssp             TSSCTTT
T ss_pred             CCCCccc
Confidence            8775443

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.88  E-value=2.2e-23  Score=142.60  Aligned_cols=71  Identities=30%  Similarity=0.334  Sum_probs=64.1

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ...||||.||||||++++. |.|+++.++||+|.+.|+|.|+|++ .++.     | .|+|||+|||.||+.||..|.+
T Consensus         5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~-----G-~G~sKK~Aeq~AA~~aL~~L~~   75 (76)
T 1ekz_A            5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTE-----G-EGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEE-----E-CCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEE-----E-eeCCHHHHHHHHHHHHHHHHhh
Confidence            3569999999999999998 9999999999999999999999999 6654     4 3599999999999999999864

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.87  E-value=2.1e-22  Score=145.98  Aligned_cols=76  Identities=29%  Similarity=0.346  Sum_probs=64.5

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCC-CCHHHHHHHHHHHHHHHHHh
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ-SKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g-~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ...||||+||||||++++.+|.|+++.+ ||+|++.|+|.|+|+|..++.     | .| +|||+|||.||+.||..|..
T Consensus        15 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~-Gp~H~~~F~~~V~v~g~~~~~-----G-~G~~SKK~Aeq~AA~~AL~~L~~   87 (103)
T 2l2n_A           15 NCYVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNS-----L-PGFFNRKAAEQSAAEVALRELAK   87 (103)
T ss_dssp             ----CTTHHHHHHHHTTCCCCEEEEEEE-SCSSSCEEEEEEEETTEEEEC-----C-SCBSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEeE-cCCCCCeEEEEEEECCEEEEE-----e-ecCCCHHHHHHHHHHHHHHHHhc
Confidence            4569999999999999999999999875 999999999999999988764     4 36 89999999999999999987


Q ss_pred             CCCC
Q 032079          137 LGYF  140 (147)
Q Consensus       137 ~g~~  140 (147)
                      .+.+
T Consensus        88 ~~~~   91 (103)
T 2l2n_A           88 SSEL   91 (103)
T ss_dssp             HC--
T ss_pred             cccc
Confidence            6644

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.87  E-value=1.5e-22  Score=143.17  Aligned_cols=77  Identities=30%  Similarity=0.201  Sum_probs=57.4

Q ss_pred             CCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           56 APNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        56 ~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      .....||||+||||||+++. .|.|+++.++||+|++.|+|.|+|++. ++.+   .   |+|||+|||.||+.||..|.
T Consensus        10 ~~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G---~---G~SKK~Aeq~AA~~aL~~L~   81 (90)
T 3llh_A           10 ANPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTG---Q---GPSKKAAKHKAAEVALKHLK   81 (90)
T ss_dssp             ---CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEE---E---ESSHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEE---E---eCCHHHHHHHHHHHHHHHHH
Confidence            44568999999999999975 899999999999999999999999986 4432   3   49999999999999999998


Q ss_pred             hCCCC
Q 032079          136 HLGYF  140 (147)
Q Consensus       136 ~~g~~  140 (147)
                      ..+.+
T Consensus        82 ~~~~~   86 (90)
T 3llh_A           82 GGSML   86 (90)
T ss_dssp             -----
T ss_pred             hcccc
Confidence            76654

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.87  E-value=3.4e-22  Score=135.91  Aligned_cols=70  Identities=26%  Similarity=0.255  Sum_probs=62.3

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      ..||||.||||||+  +.+|.|+++.++||+|++.|++.|.|+|..+ .+   .|   +|||+|||.||+.||..|.+.
T Consensus         3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G---~G---~SKK~Aeq~AA~~al~~L~~~   72 (73)
T 2b7t_A            3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG---SG---PTKKKAKLHAAEKALRSFVQF   72 (73)
T ss_dssp             SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EE---EE---SSHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-Ee---ec---CCHHHHHHHHHHHHHHHHhcC
Confidence            46999999999996  7899999999999999999999999999764 32   44   999999999999999999753

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.86  E-value=5.5e-22  Score=142.57  Aligned_cols=73  Identities=21%  Similarity=0.185  Sum_probs=65.9

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      ...|||++||||||++++. |.|+++.++||+|.+.|+|.|+|++..++.+   .|   +|||+|||.||+.||..|...
T Consensus        12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G---~G---~SKK~Aeq~AA~~AL~~L~~~   84 (97)
T 1x49_A           12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEA---KG---RSKQEARNAAAKLAVDILDNE   84 (97)
T ss_dssp             CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCE---EE---SSHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEE---ee---CCHHHHHHHHHHHHHHHHHhh
Confidence            5679999999999999996 8999999999999999999999999887753   44   999999999999999999643

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.85  E-value=7.7e-22  Score=145.38  Aligned_cols=77  Identities=22%  Similarity=0.232  Sum_probs=67.6

Q ss_pred             CCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEE-----CCEeccccceeecCCCCCHHHHHHHHHHHHH
Q 032079           57 PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTF-----EIESLNTILECFGAPQSKKKTAAEHAAEGAL  131 (147)
Q Consensus        57 ~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V-----~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL  131 (147)
                      -...|||++||||||++++ +|.|+ +.++||+|++.|+|.|+|     ++..++.     | .|+|||+|||.||+.||
T Consensus        23 ~~~~d~Kt~LqE~~Qk~~~-~p~Y~-~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~-----G-~G~SKK~AEq~AA~~AL   94 (113)
T 1uil_A           23 WTLENAKARLNQYFQKEKI-QGEYK-YTQVGPDHNRSFIAEMTIYIKQLGRRIFAR-----E-HGSNKKLAAQSCALSLV   94 (113)
T ss_dssp             CCHHHHHHHHHHHHHHSCC-CCCCE-EEEESCSTTCEEEEEEEEEETTTTEEEEEE-----C-CCSSHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHCCC-CCeEE-EeeECCCCCCcEEEEEEEeeeccCCEEEEE-----E-eeCCHHHHHHHHHHHHH
Confidence            3356999999999999999 99999 788999999999999999     5666653     4 35999999999999999


Q ss_pred             HHHHhCCCCC
Q 032079          132 WYLEHLGYFP  141 (147)
Q Consensus       132 ~~L~~~g~~p  141 (147)
                      ..|...+++.
T Consensus        95 ~~L~~~~~ie  104 (113)
T 1uil_A           95 RQLYHLGVIE  104 (113)
T ss_dssp             HHHHHHTSSC
T ss_pred             HHHHhcCCcc
Confidence            9999888774

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.85  E-value=4.6e-22  Score=143.33  Aligned_cols=69  Identities=19%  Similarity=0.068  Sum_probs=61.0

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCE-eccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIE-SLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~-~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      ..||||+||||||++ ..+|.|+++++ ||+|++.|+|.|+|++. .++.+   .|   +|||+|||+||+.||..|.
T Consensus         5 ~~D~KT~LQE~~Q~~-~~~p~Y~v~~~-GpdH~k~F~v~v~i~~~~~~g~G---~G---~SKK~AEQ~AA~~AL~~l~   74 (94)
T 1t4n_A            5 DMNAKRQLYSLIGYA-SLRLHYVTVKK-PTAVDPNSIVECRVGDGTVLGTG---VG---RNIKIAGIRAAENALRDKK   74 (94)
T ss_dssp             CHHHHHHHHHHTCSS-SSCCEEEECCC-CSSSCCSEEEEEECSSSCEEEEE---EE---SSHHHHHHHHHHHHHHCHH
T ss_pred             CCCchHHHHHHHcCC-CCCCEEEEeee-CCCCCCeEEEEEEECCEEEEEEE---Ee---CCHHHHHHHHHHHHHHHHH
Confidence            459999999999998 56899999765 99999999999999997 77653   44   9999999999999998775

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.84  E-value=4.4e-21  Score=142.18  Aligned_cols=90  Identities=21%  Similarity=0.130  Sum_probs=71.1

Q ss_pred             CCcccccccccccccCCCCCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCC
Q 032079           38 GYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQS  117 (147)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~  117 (147)
                      +|-.+..-.|.+++.........||||+||||||+     |.|+++.++||+|++.|+|.|+|+|..+ .+   .|   +
T Consensus        15 ~~~~~~~~~p~~~~~k~~~~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G---~G---~   82 (114)
T 2ljh_A           15 VPRGSHMSDPKKKMCKERIPQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LG---QG---R   82 (114)
T ss_dssp             -------CCCCCCCCCCCCCCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EE---EE---S
T ss_pred             cccccCCCCCCCccccccCCCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-Ee---ee---C
Confidence            44445555566666666666778999999999985     8999999999999999999999999887 43   45   9


Q ss_pred             CHHHHHHHHHHHHHHHHHhCCC
Q 032079          118 KKKTAAEHAAEGALWYLEHLGY  139 (147)
Q Consensus       118 SKK~AEq~AA~~AL~~L~~~g~  139 (147)
                      |||+|||+||+.||..|...+-
T Consensus        83 SKK~AEq~AA~~AL~~L~~~~~  104 (114)
T 2ljh_A           83 SKKVARIEAAATALRSFIQFKD  104 (114)
T ss_dssp             SHHHHHHHHHHHHHHHHCCCTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999976553

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.84  E-value=8.2e-21  Score=136.19  Aligned_cols=70  Identities=20%  Similarity=0.245  Sum_probs=62.9

Q ss_pred             CCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           57 PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        57 ~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      ....||||+||||||++  .+|.|+++.++||+|++.|++.|+|++..+ .+   .|   +|||+|||.||+.||..|.
T Consensus        13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G---~G---~SKK~Aeq~AA~~aL~~L~   82 (97)
T 2dmy_A           13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EA---SG---PSKKTAKLHVAVKVLQAMG   82 (97)
T ss_dssp             CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EE---EE---SSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EE---ee---CCHHHHHHHHHHHHHHHhC
Confidence            45679999999999996  689999999999999999999999999875 32   44   9999999999999999985

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.84  E-value=8.6e-21  Score=133.95  Aligned_cols=71  Identities=17%  Similarity=0.062  Sum_probs=62.8

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCc-eEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRK-LFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k-~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      ..||||+||||||++++.+ .|+  .++||+|++ .|+|.|+|++..++.+   .|   +|||+|||.||+.||..|...
T Consensus         5 ~~d~Kt~LqE~~Q~~~~~~-~Y~--~~~Gp~H~~~~F~~~v~v~g~~~~~G---~G---~SKK~Aeq~AA~~AL~~L~~~   75 (88)
T 1x48_A            5 SSGYIGLVNSFAQKKKLSV-NYE--QCEPNSELPQRFICKCKIGQTMYGTG---SG---VTKQEAKQLAAKEAYQKLLKS   75 (88)
T ss_dssp             SSCHHHHHHHHHHHTTCCE-EEE--ECCCSSSSSCCEEEEEEESSCEEEEE---EE---SSHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHcCCCC-eeE--EeeCCCCCCceEEEEEEECCEEEEEe---ec---CCHHHHHHHHHHHHHHHHHhc
Confidence            4699999999999999965 999  678999999 7999999999887653   44   999999999999999999865


Q ss_pred             C
Q 032079          138 G  138 (147)
Q Consensus       138 g  138 (147)
                      .
T Consensus        76 ~   76 (88)
T 1x48_A           76 P   76 (88)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.83  E-value=1.7e-20  Score=134.93  Aligned_cols=71  Identities=27%  Similarity=0.202  Sum_probs=64.7

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ...|||++||||||++++.+|.|+++.++||+  +.|+|.|+|++..++.+   .|   +|||+|||.||+.||..|..
T Consensus        14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G---~G---~SKK~Aeq~AA~~AL~~L~~   84 (98)
T 1x47_A           14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG---TA---SSKKLAKNKAARATLEILIP   84 (98)
T ss_dssp             TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEE---EE---SSHHHHHHHHHHHHHHHHCS
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEe---ee---CCHHHHHHHHHHHHHHHHHh
Confidence            56799999999999999999999999999998  99999999999888753   44   99999999999999999963

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.83  E-value=4e-21  Score=143.41  Aligned_cols=70  Identities=19%  Similarity=0.052  Sum_probs=61.5

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCE-eccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIE-SLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~-~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      ...||||+||||||+. ..+|.|+++.+ ||+|++.|+|.|+|+|. .++.+   .|   +|||+|||+||+.||..|.
T Consensus         6 ~~~D~KT~LQE~~Q~~-~~~P~Y~vv~~-GPdH~k~F~v~V~i~g~~~~g~G---~G---~SKK~AEQ~AA~~AL~~l~   76 (117)
T 1t4o_A            6 LDMNAKRQLYSLIGYA-SLRLHYVTVKK-PTAVDPNSIVECRVGDGTVLGTG---VG---RNIKIAGIRAAENALRDKK   76 (117)
T ss_dssp             CCTTHHHHHHHHHCCG-GGCCEEEEEEC-CCSSCCCEEEEEECTTCCEEEEE---EE---SSHHHHHHHHHHHHHHCHH
T ss_pred             CCCCchHHHHHHHcCC-CCCCEEEEeee-CCCCCCeEEEEEEECCEEEEEEE---Ee---CCHHHHHHHHHHHHHHHHH
Confidence            3469999999999995 57899999876 99999999999999998 77653   44   9999999999999998765

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.82  E-value=1.8e-20  Score=133.79  Aligned_cols=72  Identities=24%  Similarity=0.160  Sum_probs=63.3

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      -..++|+.||||||+++  .|.|+++.++||+|++.|+|.|.|+|..+ .+   .|   +|||+|||.||+.||..|...
T Consensus        12 ~~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G---~G---~SKK~AEq~AA~~AL~~L~~~   82 (91)
T 2l33_A           12 LTKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QG---AG---SNKKVAKAYAALAALEKLFPD   82 (91)
T ss_dssp             CCSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EE---EE---SSHHHHHHHHHHHHHHHHCCC
T ss_pred             hccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-Ee---ee---CCHHHHHHHHHHHHHHHHhhc
Confidence            34589999999999997  88999999999999999999999999775 32   44   999999999999999999754


Q ss_pred             C
Q 032079          138 G  138 (147)
Q Consensus       138 g  138 (147)
                      +
T Consensus        83 ~   83 (91)
T 2l33_A           83 T   83 (91)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.80  E-value=9.5e-20  Score=141.72  Aligned_cols=77  Identities=18%  Similarity=0.072  Sum_probs=67.9

Q ss_pred             CCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           56 APNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        56 ~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      .....|||++||||||++++. |.|+++.++||+|.+.|++.|+|+|..++.+   .   |+|||+|||.||+.||..|.
T Consensus         9 ~~~~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G---~---G~sKK~Aeq~AA~~al~~L~   81 (179)
T 1qu6_A            9 DLSAGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEG---E---GRSKKEAKNAAAKLAVEILN   81 (179)
T ss_dssp             CSSSCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEE---E---CCSSHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEec---C---CCCHHHHHHHHHHHHHHHHh
Confidence            345579999999999999986 8999998999999999999999999877643   3   49999999999999999998


Q ss_pred             hCCC
Q 032079          136 HLGY  139 (147)
Q Consensus       136 ~~g~  139 (147)
                      ..+.
T Consensus        82 ~~~~   85 (179)
T 1qu6_A           82 KEKK   85 (179)
T ss_dssp             SCCS
T ss_pred             cccc
Confidence            6653

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.80  E-value=1.2e-19  Score=136.65  Aligned_cols=69  Identities=22%  Similarity=0.240  Sum_probs=62.6

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCC-CCHHHHHHHHHHHHHHHHH
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ-SKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g-~SKK~AEq~AA~~AL~~L~  135 (147)
                      ...||||+||||||++++.+|.|+++.+   +|++.|+|.|+|+|..++.     | .| +|||+|||.||+.||..|.
T Consensus        24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~---~H~~~F~v~V~v~g~~~g~-----G-~G~~SKK~AEQ~AA~~AL~~L~   93 (128)
T 1whn_A           24 PQITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVAEQKYQS-----T-LWDKSKKLAEQTAAIVCLRSQG   93 (128)
T ss_dssp             TTCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEETTEEEEE-----S-SCBSSHHHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHcCCCCCeEEEEee---cCCCcEEEEEEECCEEEEE-----E-eccCCHHHHHHHHHHHHHHHHh
Confidence            3569999999999999999999998866   9999999999999988864     5 46 9999999999999999995

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.78  E-value=8.1e-19  Score=118.42  Aligned_cols=67  Identities=24%  Similarity=0.205  Sum_probs=58.9

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ...||++.|||||     .+|.|+++.++||+|++.|+|.|.|+|..+ .+   .|   +|||+|||.||+.||..|..
T Consensus         2 ~~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G---~G---~SKK~Aeq~AA~~al~~L~~   68 (71)
T 2b7v_A            2 SGKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EG---SG---RNKKLAKARAAQSALATVFN   68 (71)
T ss_dssp             CSSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EE---EE---SSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EE---ee---CCHHHHHHHHHHHHHHHHHh
Confidence            4579999999993     689999999999999999999999999754 22   44   99999999999999999875

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.75  E-value=2e-18  Score=137.42  Aligned_cols=71  Identities=28%  Similarity=0.291  Sum_probs=64.7

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ..|||+.||||||++++.+|.|+++.++||+|.+.|+|.|+|+|. ++.+   .|   +|||+|||.||+.||..|..
T Consensus       149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G---~G---~skK~Ae~~AA~~AL~~L~~  219 (221)
T 2nug_A          149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLG---EG---KSKKEAEQRAAEELIKLLEE  219 (221)
T ss_dssp             CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE---EE---SSHHHHHHHHHHHHHHHHC-
T ss_pred             ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEE---ec---CCHHHHHHHHHHHHHHHhhc
Confidence            579999999999999999999999999999999999999999998 7653   44   99999999999999999863

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.74  E-value=4.7e-18  Score=138.19  Aligned_cols=73  Identities=26%  Similarity=0.245  Sum_probs=65.9

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ...|||+.||||||++++..|.|+++.++||+|.+.|+|.|+|+|..++.+   .|   +|||+|||.||+.||..|..
T Consensus       177 ~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G---~G---~SKK~Aeq~AA~~AL~~L~~  249 (252)
T 1o0w_A          177 MLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATG---KG---RTKKEAEKEAARIAYEKLLK  249 (252)
T ss_dssp             CCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEE---EE---SSHHHHHHHHHHHHHHHHC-
T ss_pred             cccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEE---ee---CCHHHHHHHHHHHHHHHHhh
Confidence            357999999999999999999999999999999999999999999887653   44   99999999999999999864

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.73  E-value=1e-17  Score=114.76  Aligned_cols=68  Identities=25%  Similarity=0.207  Sum_probs=57.5

Q ss_pred             ChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           61 SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        61 d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      +.|+.|++|+|.+  ..|.|+++.++||+|++.|++.|.|+|..+ .+   .|   +|||+|||.||+.||..|...
T Consensus         5 ~~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G---~G---~SKK~Aeq~AA~~al~~L~~~   72 (75)
T 3p1x_A            5 HGKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QG---AG---SNKKVAKAYAALAALEKLFPD   72 (75)
T ss_dssp             -CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EE---EE---SSHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EE---EE---CCHHHHHHHHHHHHHHHHHcc
Confidence            3566777777775  588999999999999999999999999876 32   44   999999999999999999654

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.71  E-value=2.8e-17  Score=133.27  Aligned_cols=72  Identities=26%  Similarity=0.181  Sum_probs=65.4

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      ...||||.||||||++++.+|.|+++.++||+  +.|+|.|+|+|..++.+   .|   +|||+|||.||+.||..|...
T Consensus        20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G---~G---~SKK~Aeq~AA~~aL~~L~~~   91 (232)
T 2yt4_A           20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG---TA---SSKKLAKNKAARATLEILIPD   91 (232)
T ss_dssp             TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEE---EE---SSHHHHHHHHHHHHHHHHSTT
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeec---CC---CCHHHHHHHHHHHHHHHHHhh
Confidence            56799999999999999999999999999999  99999999999888653   44   999999999999999999753

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=99.68  E-value=3.1e-18  Score=139.65  Aligned_cols=73  Identities=26%  Similarity=0.248  Sum_probs=0.0

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ...|||+.||||||++++.+|.|+++.++||+|.+.|+|.|+|+|..++.     | .|+|||+|||.||+.||..|+.
T Consensus       175 ~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~-----G-~G~SKK~Aeq~AA~~AL~~L~~  247 (248)
T 3n3w_A          175 LIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELAR-----A-IAGSKKEAQQMAAKIALEKLGA  247 (248)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             cccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEE-----e-eeCCHHHHHHHHHHHHHHHHHc
Confidence            46799999999999999999999999999999999999999999987764     4 3599999999999999998864

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.65  E-value=9.6e-18  Score=135.09  Aligned_cols=73  Identities=32%  Similarity=0.304  Sum_probs=0.0

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhCC
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLG  138 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~g  138 (147)
                      ..|||+.||||||++++..|.|+++. +||+|.+.|+|.|+|+|..++.     | .|+|||+||+.||+.||..|...+
T Consensus       161 ~~dpkt~Lqe~~q~~~~~~p~Y~~~~-~Gp~h~~~F~v~v~v~g~~~~~-----G-~G~skk~Ae~~AA~~AL~~L~~~~  233 (242)
T 2a11_A          161 GLDWKTSLQELTAARGLGAPSYLVTS-TGPDHDKEFTAVVVVMDSEYGS-----G-VGRSKKEAEQKAAAAAWKALEVLD  233 (242)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCChHHHHHHHHHHhCCCCCeEEEec-cCCCCCCeEEEEEEECCEEEEE-----e-eeCCHHHHHHHHHHHHHHHHhhcc
Confidence            57999999999999999999999887 9999999999999999987764     4 359999999999999999997654

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.64  E-value=6e-16  Score=125.41  Aligned_cols=71  Identities=24%  Similarity=0.218  Sum_probs=63.5

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      ...|||++||||     +..|.|+++.++||+|++.|++.|.|+|..+ .+   .|   +|||+|||.||+.||..|...
T Consensus       159 ~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G---~G---~sKK~Aeq~AA~~al~~L~~~  226 (236)
T 2l3j_A          159 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EG---SG---RNKKLAKARAAQSALATVFNL  226 (236)
T ss_dssp             SSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EE---EE---SSHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-Ee---ee---CCHHHHHHHHHHHHHHHHccc
Confidence            467999999999     5789999999999999999999999999764 32   44   999999999999999999888


Q ss_pred             CCC
Q 032079          138 GYF  140 (147)
Q Consensus       138 g~~  140 (147)
                      .++
T Consensus       227 ~~~  229 (236)
T 2l3j_A          227 HLL  229 (236)
T ss_dssp             CSS
T ss_pred             cch
Confidence            877

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.60  E-value=2.4e-15  Score=116.79  Aligned_cols=72  Identities=14%  Similarity=0.063  Sum_probs=63.0

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      ...||++.||||||+++|.+ .|++ .++||+|.+.|++.|.|++..++.+   .   |+|||+|++.||+.||..|...
T Consensus       102 ~~~n~~~~L~E~~qk~~~~~-~Y~~-~~~G~~h~~~F~~~v~v~~~~~~~g---~---g~sKK~Ak~~AA~~al~~L~~~  173 (179)
T 1qu6_A          102 SMGNYIGLINRIAQKKRLTV-NYEQ-CASGVHGPEGFHYKCKMGQKEYSIG---T---GSTKQEAKQLAAKLAYLQILSE  173 (179)
T ss_dssp             CCCCCHHHHHHHHHHSCCEE-EEEE-EEECSSSSSEEEEEEEEETTBCCEE---E---ESSHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHhcCCcc-eEEe-cCcCCCCCCeEEEEEEECCEEEeeE---E---ECCHHHHHHHHHHHHHHHHhcc
Confidence            46799999999999999976 9996 5789999999999999999876542   3   4999999999999999999754

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.57  E-value=7.3e-15  Score=119.02  Aligned_cols=70  Identities=26%  Similarity=0.255  Sum_probs=61.8

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      ..|+|+.|++|++.  +..|.|+++.++||+|++.|+|+|+|+|..+ .+   .|   +|||+|||.||+.||..|...
T Consensus         3 ~~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G---~G---~SKK~Aeq~AA~~al~~l~~~   72 (236)
T 2l3j_A            3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG---SG---PTKKKAKLHAAEKALRSFVQF   72 (236)
T ss_dssp             CCCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EE---EE---SHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EE---ec---CChHHHHHHHHHHHHHHHHhc
Confidence            36899999999986  5789999999999999999999999999774 32   44   999999999999999999764

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.56  E-value=2.7e-15  Score=121.56  Aligned_cols=69  Identities=16%  Similarity=0.105  Sum_probs=53.3

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEE--EeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFD--CCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Ye--l~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      ...|||++||| ||+++|.+|.|+  ++.++||+|.+.|+|.|.  + .++     .| .|+|||+|||.||+.||..|.
T Consensus       128 ~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~-~~~-----~G-~G~sKK~Aeq~AA~~aL~~L~  197 (232)
T 2yt4_A          128 GLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--K-HTV-----RG-WCKNKRVGKQLASQKILQLLH  197 (232)
T ss_dssp             TCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--T-EEE-----EE-EESSHHHHHHHHHHHHHHHHS
T ss_pred             CCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--E-EEE-----EE-EeCCHHHHHHHHHHHHHHHHH
Confidence            45799999999 999999999999  788899999999999886  2 222     23 249999999999999999996


Q ss_pred             h
Q 032079          136 H  136 (147)
Q Consensus       136 ~  136 (147)
                      .
T Consensus       198 ~  198 (232)
T 2yt4_A          198 P  198 (232)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=99.39  E-value=2.8e-14  Score=121.70  Aligned_cols=69  Identities=23%  Similarity=0.183  Sum_probs=0.0

Q ss_pred             CCCCChhHHHHHHHHhcCCCC-CeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           57 PNKVSAKSKLHEICAANHWKP-PSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        57 ~~~~d~KS~LQE~~Qk~~~~~-P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      ....|||++||||||++++.. |.|+++.++||     |+|.|+|+|..++.     | .|+|||+|||.||+.||..|.
T Consensus       251 ~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~-----G-~G~SKK~AEq~AA~~AL~~L~  319 (341)
T 3rv0_A          251 PLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDE-----A-EGNSIREAEHRAAMKVLENDE  319 (341)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEE-----E-EeCCHHHHHHHHHHHHHHHhh
Confidence            456799999999999998755 69999888887     99999999988765     3 359999999999999999886


Q ss_pred             h
Q 032079          136 H  136 (147)
Q Consensus       136 ~  136 (147)
                      .
T Consensus       320 ~  320 (341)
T 3rv0_A          320 L  320 (341)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=99.14  E-value=5.2e-11  Score=96.53  Aligned_cols=68  Identities=18%  Similarity=0.098  Sum_probs=51.0

Q ss_pred             ChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhCC
Q 032079           61 SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLG  138 (147)
Q Consensus        61 d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~g  138 (147)
                      +||+.||||+|.... .+.|   ...|+.|.+.|+|.|.|++..++.+   .|   +|||+|||.||+.||..|...+
T Consensus       198 ~~k~~l~el~~~~~~-~~~~---~~~~~~~~~~f~v~v~v~~~~~~~G---~G---~SkK~Aeq~AA~~AL~~l~~~~  265 (265)
T 3c4b_A          198 VPRSPVRELLEMEPE-TAKF---SPAERTYDGKVRVTVEVVGKGKFKG---VG---RSYRIAKSAAARRALRSLKANQ  265 (265)
T ss_dssp             SCCCHHHHHHHHCTT-TEEE---CCCEECTTSCEEEEEEETTTEEEEE---EE---SSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHhccC-Ccee---eeccccCCCcEEEEEEEecceEEEE---ee---CCHHHHHHHHHHHHHHHHhhCc
Confidence            456666666666532 2333   3456789999999999999776643   44   9999999999999999997653

>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}

Probab=97.32  E-value=0.00047  Score=49.40  Aligned_cols=76  Identities=18%  Similarity=0.184  Sum_probs=55.8

Q ss_pred             CChhHHHHHHHHhcCC-----CCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079           60 VSAKSKLHEICAANHW-----KPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        60 ~d~KS~LQE~~Qk~~~-----~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      .+..+.|+.||++.-.     ..|.|.+.+.+..  ...| |+|.+.... . .-...|.+.++||.|++.||-.|...|
T Consensus         4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~--~~~~-c~v~LP~~s-p-lr~i~g~~~~sk~~AK~sAAf~Ac~~L   78 (102)
T 2kou_A            4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEF--GGTI-CRITLPANA-P-ISEIESSLLPSTEAAKKDACLKAVHEL   78 (102)
T ss_dssp             SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGG--GCEE-EEEECCTTC-S-SCCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCccccCccceEEEeEeecC--CCeE-EEEECCCCC-C-CCeeeCCccccHHHHHHHHHHHHHHHH
Confidence            4678999999999742     5689996444322  2467 999996521 1 112246667999999999999999999


Q ss_pred             HhCCCC
Q 032079          135 EHLGYF  140 (147)
Q Consensus       135 ~~~g~~  140 (147)
                      .+.|.|
T Consensus        79 ~~~G~L   84 (102)
T 2kou_A           79 HNLGVL   84 (102)
T ss_dssp             HHHCSC
T ss_pred             HHCCCC
Confidence            999977

>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.63  E-value=0.03  Score=41.45  Aligned_cols=74  Identities=22%  Similarity=0.261  Sum_probs=47.5

Q ss_pred             CCCChhHHHHHHHHhcCC-----CCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHH
Q 032079           58 NKVSAKSKLHEICAANHW-----KPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALW  132 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~-----~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~  132 (147)
                      +.-.||+.|.-..|.--.     ....|..  .+|+. .+.-|+++.....-   .+++.|   +.|-+||..||..|+.
T Consensus        15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~--t~g~k-~K~~tl~l~WP~~m---ef~a~G---~rK~eAE~kAAA~AC~   85 (119)
T 2db2_A           15 EFPQPKNLLNSVIGRALGISHAKDKLVYVH--TNGPK-KKKVTLHIKWPKSV---EVEGYG---SKKIDAERQAAAAACQ   85 (119)
T ss_dssp             TCSCHHHHHHHHHHHHTTHHHHHHHEEEEE--CCSSS-SEEEEEEECSSSCE---EEEEEE---SSHHHHHHHHHHHHHH
T ss_pred             hCCChHHHHHHHHHHHHccCchhhheeEEe--ecCCc-eeEEEEEecCCCcE---EEEeec---cchHHHHHHHHHHHHH
Confidence            345799999998876422     2224543  23322 23334443333321   233445   9999999999999999


Q ss_pred             HHHhCCCC
Q 032079          133 YLEHLGYF  140 (147)
Q Consensus       133 ~L~~~g~~  140 (147)
                      .|+..|++
T Consensus        86 kLK~Lgll   93 (119)
T 2db2_A           86 LFKGWGLL   93 (119)
T ss_dssp             HHHHHTSS
T ss_pred             HHHHcCcc
Confidence            99999998

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=92.85  E-value=0.16  Score=48.66  Aligned_cols=69  Identities=20%  Similarity=0.084  Sum_probs=43.2

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCC-----------CCC-ceEEEEEEECCEeccccceeecCCCCCHHHHHHHH
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGP-----------CYR-KLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHA  126 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP-----------~H~-k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~A  126 (147)
                      ...||-.++   ||.|- -+.|.+.+....           ..- -.|.|.+-+.+--  .+   .| .-+.||+|||.|
T Consensus        16 ~~~pk~~~~---q~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~--~~---~~-~~~~kkd~eq~a   85 (950)
T 3htx_A           16 TPTPKAIIH---QKFGA-KASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFS--VV---SN-VFKKKKDSEQSA   85 (950)
T ss_dssp             CCCCHHHHH---HTTGG-GSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCE--EE---CC-CBSCHHHHHHHH
T ss_pred             CCCHHHHHH---HHhCc-ceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCce--Ee---cc-hhhccccHHHHH
Confidence            346887765   44443 368987544321           112 3777777776522  21   23 458999999999


Q ss_pred             HHHHHHHHHhC
Q 032079          127 AEGALWYLEHL  137 (147)
Q Consensus       127 A~~AL~~L~~~  137 (147)
                      |+.||++|..+
T Consensus        86 a~~al~~~g~~   96 (950)
T 3htx_A           86 AELALDKLGIR   96 (950)
T ss_dssp             HHHHHTTTTST
T ss_pred             HHHHHHHhCCC
Confidence            99998776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	1e-08
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	2e-08
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	4e-08
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	1e-07
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	1e-07
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	3e-07
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	2e-05
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	2e-05
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	2e-05
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	2e-05
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	5e-05
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	2e-04
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	2e-04
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	3e-04
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	3e-04
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	5e-04
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	0.003

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.8 bits (111), Expect = 1e-08
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 62  AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKT 121
            K+ L EI  + H  PP +   + E     ++F  +V    +++ T           KK 
Sbjct: 2   YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIAT------GKGRTKKE 55

Query: 122 AAEHAAEGAL 131
           A + AA  A 
Sbjct: 56  AEKEAARIAY 65

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 46.1 bits (109), Expect = 2e-08
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 62  AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKT 121
            K+ L EI      + P +     EGP ++K F  +               G  +SKK+ 
Sbjct: 2   YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKI------KEYRTLGEGKSKKE- 54

Query: 122 AAEHAAEGALWYLE 135
           A + AAE  +  LE
Sbjct: 55  AEQRAAEELIKLLE 68

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 45.5 bits (107), Expect = 4e-08
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 63  KSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTA 122
              L E+     W+ P +   QE GP +++ FT     E               + K+ A
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-------ETGSGTSKQVA 55

Query: 123 AEHAAEGALWYLE 135
              AAE  L   +
Sbjct: 56  KRVAAEKLLTKFK 68

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.9 bits (105), Expect = 1e-07
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 55  GAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGA 114
           G+       S+L +I  A   K P +    E G   R+ F  +V           E    
Sbjct: 1   GSSGSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGN-------EVATG 53

Query: 115 PQSKKKTAAEHAAEGALWYLEHLGY 139
               KK A ++AAE     L  LGY
Sbjct: 54  TGPNKKIAKKNAAEAM---LLQLGY 75

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 58  NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQS 117
           +K S  S++HEI    +     F   +EEGP + K F                      +
Sbjct: 5   DKKSPISQVHEIGIKRNM-TVHFKVLREEGPAHMKNFITACIVGSIV-------TEGEGN 56

Query: 118 KKKTAAEHAAEGALWYLEHL 137
            KK + + AAE  L  L+ L
Sbjct: 57  GKKVSKKRAAEKMLVELQKL 76

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (104), Expect = 3e-07
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 62  AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKT 121
           AK++L++       +             + + F  ++T  I+ L   +       +KK  
Sbjct: 28  AKARLNQYFQKEKIQGEYKYTQVGPD--HNRSFIAEMTIYIKQLGRRIFAREHGSNKKL- 84

Query: 122 AAEHAAEGALWYLEHLGYFP 141
           AA+  A   +  L HLG   
Sbjct: 85  AAQSCALSLVRQLYHLGVIE 104

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 2e-05
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 57  PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ 116
            ++ +    L E+     W+ P +   QE GP +RK FT     E               
Sbjct: 6   QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-------EIGSG 58

Query: 117 SKKKTAAEHAAEGAL 131
           + KK A  +AA   L
Sbjct: 59  TSKKLAKRNAAAKML 73

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 61  SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKK 120
           +    LHE         P ++C + +   +   FTF+VT    +            + KK
Sbjct: 3   TPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDITCTGE-------GTSKK 54

Query: 121 TAAEHAAEGALWYLE 135
            A   AAE A+  L+
Sbjct: 55  LAKHRAAEAAINILK 69

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 2e-05
 Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 8/78 (10%)

Query: 57  PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ 116
           PN  S    LHE         P ++  + E P   + F   VT +               
Sbjct: 6   PNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGV------TYGSGTA 57

Query: 117 SKKKTAAEHAAEGALWYL 134
           S KK A   AA   L  L
Sbjct: 58  SSKKLAKNKAARATLEIL 75

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 7/73 (9%)

Query: 63  KSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTA 122
             +L+            +      GP + + FTF+V  +                 KK A
Sbjct: 16  MEELNTYRQKQGVVLK-YQELPNSGPPHDRRFTFQVIIDGREFPEGEGR------SKKEA 68

Query: 123 AEHAAEGALWYLE 135
              AA+ A+  L 
Sbjct: 69  KNAAAKLAVEILN 81

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (87), Expect = 5e-05
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 55  GAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGA 114
           G+      K+ L+  C      P              + F  +V  E  +   +      
Sbjct: 1   GSSGSSGIKNFLYAWCGKRKMTPAYEIRAVGNKNR--QKFMCEVRVEGFNYAGM-----G 53

Query: 115 PQSKKKTAAEHAAEGALWYLEHLGYFPIRKL 145
             + KK A  +AA   + YL  +      ++
Sbjct: 54  NSTNKKDAQSNAARDFVNYLVRINEVKSEEV 84

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.9 bits (83), Expect = 2e-04
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 12/81 (14%)

Query: 57  PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ 116
           P+  +    L+E+          +D   E G  + K F   V  + +        F    
Sbjct: 1   PSGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQF-------FEGSG 48

Query: 117 SKKKTAAEHAAEGALWYLEHL 137
             KK A   AA+ AL  + +L
Sbjct: 49  RNKKLAKARAAQSALATVFNL 69

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 57  PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ 116
           P +++ K  L E C       P ++          ++F   VT   +   +         
Sbjct: 23  PPQITPKMCLLEWCRREKLPQPVYET---VQRTIDRMFCSVVTVAEQKYQS-----TLWD 74

Query: 117 SKKKTAAEHAAEGAL 131
             KK A + AA   L
Sbjct: 75  KSKKLAEQTAAIVCL 89

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.2 bits (81), Expect = 3e-04
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 14/86 (16%)

Query: 57  PNKVSAKSKLHEICAANHWKP-PSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAP 115
           P  V  K+ L ++   N  KP   +    + GP +  LF   ++ E+       + F   
Sbjct: 1   PGPVLPKNALMQL---NEIKPGLQYMLLSQTGPVHAPLFV--MSVEVNG-----QVFEGS 50

Query: 116 QSKKKTAAEHAAEGALWYLEHLGYFP 141
              KK A  HAAE A   L     FP
Sbjct: 51  GPTKKKAKLHAAEKA---LRSFVQFP 73

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 3e-04
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 63  KSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTA 122
             KL++    +      +      GP + + FTF+V  + +               K+ A
Sbjct: 10  MDKLNKYRQMHGVAIT-YKELSTSGPPHDRRFTFQVLIDEKEFPEAKGR------SKQEA 62

Query: 123 AEHAAEGALWYLE 135
              AA+ A+  L+
Sbjct: 63  RNAAAKLAVDILD 75

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 5e-04
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 61  SAKSKLHEICAANHWKP-PSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKK 119
            A   ++ +   N  +P   +    + GP +  +FT  V  +  +       + A    K
Sbjct: 7   KAIDLMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTT-------YEASGPSK 59

Query: 120 KTAAEHAAEGAL 131
           KTA  H A   L
Sbjct: 60  KTAKLHVAVKVL 71

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (74), Expect = 0.003
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 9/82 (10%)

Query: 50  ESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTIL 109
            + +EG     +    ++ I            C    G    + F +K     +      
Sbjct: 5   TNSSEGLSMG-NYIGLINRIAQKKRLTVNYEQCA--SGVHGPEGFHYKCKMGQK------ 55

Query: 110 ECFGAPQSKKKTAAEHAAEGAL 131
           E      S K+ A + AA+ A 
Sbjct: 56  EYSIGTGSTKQEAKQLAAKLAY 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.91
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.88
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.87
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.87
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.87
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.87
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.87
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.86
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.86
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.84
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.83
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.82
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.82
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.78
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.74
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.68
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	99.65
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.64

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.7e-24  Score=143.78  Aligned_cols=68  Identities=28%  Similarity=0.294  Sum_probs=63.5

Q ss_pred             ChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079           61 SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        61 d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      ||||.||||||+++|.+|.|++++.+||+|.+.|++.|.|+|..++.+   .|   +|||+|||.||+.||..|
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g---~g---~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATG---KG---RTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEE---EE---SSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEE---Ee---CCHHHHHHHHHHHHHHHh
Confidence            799999999999999999999999999999999999999999988653   44   999999999999999987

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.88  E-value=2.2e-23  Score=138.48  Aligned_cols=68  Identities=28%  Similarity=0.304  Sum_probs=61.7

Q ss_pred             ChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           61 SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        61 d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      ||||.||||||+++|++|.|++++++||+|++.|+|.|.|++.. +.+   .|   +|||.|||.||+.||..|+
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g---~g---~sKK~Aeq~AA~~aL~~Lk   68 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLG---EG---KSKKEAEQRAAEELIKLLE   68 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEE---EE---SSHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCEE-EEE---ec---CCHHHHHHHHHHHHHHHhC
Confidence            79999999999999999999999999999999999999999854 322   34   9999999999999999884

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.7e-22  Score=144.08  Aligned_cols=81  Identities=21%  Similarity=0.274  Sum_probs=69.1

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      ...||||.||||||++++ +|.|++. ++||+|++.|+|.|.|+|..+..    .| .|+|||+|||.||+.||..|.+.
T Consensus         4 ~~~~~Ks~LqE~~qk~k~-~P~Y~~~-~~G~~h~~~F~~~v~v~g~~~~~----~g-~g~sKK~AEq~AA~~al~~L~~~   76 (99)
T d1whqa_           4 GSSGIKNFLYAWCGKRKM-TPAYEIR-AVGNKNRQKFMCEVRVEGFNYAG----MG-NSTNKKDAQSNAARDFVNYLVRI   76 (99)
T ss_dssp             CCCSSHHHHHHHHHHTTC-CCEEEEE-EEECSSSEEEEEEEECTTCSCCE----EE-EESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHhCCC-CCeEEEe-cccCCCCceEEEEEEecccccee----cc-CCccHHHHHHHHHHHHHHHHHHc
Confidence            457999999999999988 6999965 57999999999999999877521    23 24999999999999999999999


Q ss_pred             CCCCcccc
Q 032079          138 GYFPIRKL  145 (147)
Q Consensus       138 g~~p~~~~  145 (147)
                      |.++..++
T Consensus        77 ~~~~~~~~   84 (99)
T d1whqa_          77 NEVKSEEV   84 (99)
T ss_dssp             TSSCTTTS
T ss_pred             CCCChhhC
Confidence            98876554

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.87  E-value=1.8e-22  Score=134.71  Aligned_cols=67  Identities=28%  Similarity=0.392  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           62 AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        62 ~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      ||+.||||||+++|++|.|+++.++||+|++.|+|.|.|++..+ .+   .|   +|||+||+.||+.||+.|+
T Consensus         2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~-~g---~g---~sKK~Aeq~AA~~aL~~L~   68 (69)
T d1di2a_           2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE-TG---SG---TSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEE-EE---EE---SSHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEEE-ec---Cc---CcHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999998653 22   34   9999999999999999986

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.4e-22  Score=134.66  Aligned_cols=72  Identities=28%  Similarity=0.399  Sum_probs=63.7

Q ss_pred             CCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079           56 APNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        56 ~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      .....|||+.||||||+++|.+|.|+++.++|++|.+.|+|.|.|++.. +.+   .|   +|||+|||.||+.||..|
T Consensus         5 ~~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g---~G---~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1           5 QQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIG---SG---TSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEE---EE---SSHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEeccee-ecc---cc---ccHHHHHHHHHHHHHHhC
Confidence            3446799999999999999999999999999999999999999998754 322   34   999999999999999876

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3e-22  Score=134.73  Aligned_cols=71  Identities=27%  Similarity=0.261  Sum_probs=63.1

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      .+||+|.||||||++++ +|.|+++.++||+|++.|++.|.|++. ++     .| .|+|||+||+.||+.||..|+..
T Consensus         1 gK~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~-----~g-~g~sKK~Aeq~AA~~al~~L~~~   71 (73)
T d2dixa1           1 GKTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TC-----TG-EGTSKKLAKHRAAEAAINILKAN   71 (73)
T ss_dssp             CCCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EE-----EE-CSSCTTHHHHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEEE-EE-----Ee-ccccHHHHHHHHHHHHHHHHHhc
Confidence            36899999999999987 899999999999999999999999886 33     34 25999999999999999999764

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.4e-22  Score=140.65  Aligned_cols=77  Identities=21%  Similarity=0.147  Sum_probs=67.8

Q ss_pred             CCCCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHH
Q 032079           54 EGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWY  133 (147)
Q Consensus        54 ~~~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~  133 (147)
                      .......+||++||||||++++ +|.|++++++||+|++.|+|.|.|+|..++.+   .|   +|||+||+.||+.||+.
T Consensus         7 ~~~~~~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g---~G---~sKK~Aeq~AA~~aL~~   79 (90)
T d1qu6a1           7 AGDLSAGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPEG---EG---RSKKEAKNAAAKLAVEI   79 (90)
T ss_dssp             CCCSSSCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCEE---EC---CSSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeeecc---CC---CcHHHHHHHHHHHHHHH
Confidence            3344567999999999999987 79999999999999999999999999888643   44   99999999999999999


Q ss_pred             HHhC
Q 032079          134 LEHL  137 (147)
Q Consensus       134 L~~~  137 (147)
                      |...
T Consensus        80 L~~~   83 (90)
T d1qu6a1          80 LNKE   83 (90)
T ss_dssp             HHSC
T ss_pred             HHhh
Confidence            9754

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=7.4e-22  Score=138.01  Aligned_cols=71  Identities=31%  Similarity=0.301  Sum_probs=63.9

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      ...||+|+||||||+++|.+|.|+++.++||+|.+.|+|.|.|++..+ .+   .|   +|||+||+.||+.||..|.
T Consensus         4 ~~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~g---~g---~SKK~Ae~~AA~~aL~~l~   74 (89)
T d1uhza_           4 GSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVA-TG---TG---PNKKIAKKNAAEAMLLQLG   74 (89)
T ss_dssp             SSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEE-EE---EE---SSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeeec-cc---cc---hHHHHHHHHHHHHHHHHhC
Confidence            346999999999999999999999999999999999999999998764 22   44   9999999999999998884

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=4.7e-22  Score=137.69  Aligned_cols=77  Identities=19%  Similarity=0.169  Sum_probs=68.8

Q ss_pred             CCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           57 PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        57 ~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      +...+||++||||||++++ .|.|++++++||+|.+.|+|.|.|+|..++.+   .|   +|||+||+.||+.||..|..
T Consensus         4 ~~~~~yk~~L~E~~Qk~~~-~~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g---~g---~sKK~Aeq~AA~~aL~~L~~   76 (85)
T d1x49a1           4 DTPGFYMDKLNKYRQMHGV-AITYKELSTSGPPHDRRFTFQVLIDEKEFPEA---KG---RSKQEARNAAAKLAVDILDN   76 (85)
T ss_dssp             CCTTHHHHHHHHHHHHHTC-CEEEEEEEEESCSSSCEEEEEEEESSCCCCCE---EE---SSHHHHHHHHHHHHHHHHTT
T ss_pred             CCchhHHHHHHHHHHhcCC-CCeEEEEEecCCCCCceEEEEEecCceEeecc---cc---ccHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999998 68999999999999999999999999888653   44   99999999999999999987


Q ss_pred             CCCC
Q 032079          137 LGYF  140 (147)
Q Consensus       137 ~g~~  140 (147)
                      .+..
T Consensus        77 ~~~~   80 (85)
T d1x49a1          77 ENKV   80 (85)
T ss_dssp             TCCC
T ss_pred             cCcc
Confidence            7644

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.7e-21  Score=142.03  Aligned_cols=80  Identities=24%  Similarity=0.262  Sum_probs=65.2

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL  137 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~  137 (147)
                      ...|||++||||||+++. +|.|++ .+.||+|++.|+|+|.|++..++..+.+.| .|+|||+|||.||+.||..|.+.
T Consensus        24 t~~n~Ks~LqE~~Qk~k~-~p~Y~i-~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G-~G~sKK~AEq~AA~~~l~~L~~~  100 (113)
T d1uila_          24 TLENAKARLNQYFQKEKI-QGEYKY-TQVGPDHNRSFIAEMTIYIKQLGRRIFARE-HGSNKKLAAQSCALSLVRQLYHL  100 (113)
T ss_dssp             CHHHHHHHHHHHHHHSCC-CCCCEE-EEESCSTTCEEEEEEEEEETTTTEEEEEEC-CCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHhCCC-CCceEE-eeeccCCCCeEEEEEEEeeeccCCeEEeec-ccchHHHHHHHHHHHHHHHHHHc
Confidence            345899999999999976 599995 678999999999999995332221122345 36999999999999999999999


Q ss_pred             CCC
Q 032079          138 GYF  140 (147)
Q Consensus       138 g~~  140 (147)
                      |+|
T Consensus       101 g~i  103 (113)
T d1uila_         101 GVI  103 (113)
T ss_dssp             TSS
T ss_pred             CCc
Confidence            987

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=1.3e-21  Score=132.80  Aligned_cols=71  Identities=30%  Similarity=0.299  Sum_probs=63.2

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      ..+||+|.||||||+++|+ |.|++++++||+|++.|+|.|.|++.. +     .| .|+|||+|||.||+.||..|++
T Consensus         5 ~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~~-~-----~g-~G~SKK~Aeq~AA~~al~~L~~   75 (76)
T d1ekza_           5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIV-T-----EG-EGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTEE-E-----EE-CCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEeeeE-e-----ee-ccCcHHHHHHHHHHHHHHHHHc
Confidence            4579999999999999996 899999999999999999999998753 3     34 3599999999999999999975

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.4e-20  Score=129.95  Aligned_cols=77  Identities=16%  Similarity=0.138  Sum_probs=67.7

Q ss_pred             CCCCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHH
Q 032079           54 EGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWY  133 (147)
Q Consensus        54 ~~~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~  133 (147)
                      ..+....|||++||||||++++ .|.|++. +.||+|.+.|+|.|+|+|..|+.+   .|   +|||+||+.||+.||..
T Consensus         8 ~~~~~~~n~~s~L~E~~Qk~~~-~~~y~~~-~~g~~h~~~F~~~v~i~g~~~~~g---~G---~sKK~Akq~AA~~Al~~   79 (89)
T d1qu6a2           8 SEGLSMGNYIGLINRIAQKKRL-TVNYEQC-ASGVHGPEGFHYKCKMGQKEYSIG---TG---STKQEAKQLAAKLAYLQ   79 (89)
T ss_dssp             SCCCCCCCCHHHHHHHHHHSCC-EEEEEEE-EECSSSSSEEEEEEEEETTBCCEE---EE---SSHHHHHHHHHHHHHHH
T ss_pred             CcCccccCHHHHHHHHHHhcCC-Ccceeee-ccCCCCCCceEEEEEECCcccccc---cc---chHHHHHHHHHHHHHHH
Confidence            4467788999999999999998 4689865 789999999999999999998753   34   99999999999999999


Q ss_pred             HHhCC
Q 032079          134 LEHLG  138 (147)
Q Consensus       134 L~~~g  138 (147)
                      |....
T Consensus        80 L~~~~   84 (89)
T d1qu6a2          80 ILSEE   84 (89)
T ss_dssp             HHHCC
T ss_pred             HHccC
Confidence            98765

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.6e-20  Score=128.67  Aligned_cols=71  Identities=28%  Similarity=0.254  Sum_probs=61.8

Q ss_pred             CCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079           56 APNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL  134 (147)
Q Consensus        56 ~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L  134 (147)
                      .+..+||||.||||||++++.+|.|.++..+|++  ..|++.|.|+|..++.+   .|   +|||.||+.||+.||..|
T Consensus         5 n~~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~~--~~F~~~v~i~g~~~~~g---~G---~sKK~Aeq~AA~~AL~~L   75 (85)
T d1x47a1           5 NPNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG---TA---SSKKLAKNKAARATLEIL   75 (85)
T ss_dssp             CTTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEE---EE---SSHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhCCCCCCeEEEecCCCC--CCEEEEEEECCEEEecC---Cc---chHHHHHHHHHHHHHHHH
Confidence            3557899999999999999999999987766654  46999999999998753   44   999999999999999988

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.9e-20  Score=127.51  Aligned_cols=69  Identities=17%  Similarity=0.140  Sum_probs=60.8

Q ss_pred             hhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhCC
Q 032079           62 AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLG  138 (147)
Q Consensus        62 ~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~g  138 (147)
                      |+|+||||||+++++ +.|+++ ++||+|.+.|+|.|+|+|..|+.+   .|   +|||+|||.||+.||..|....
T Consensus         1 Y~s~L~E~~Qk~~~~-~~~~~~-~~G~~h~~~F~~~v~v~~~~~~~g---~G---~sKK~Aeq~AA~~Al~~L~~~~   69 (76)
T d1x48a1           1 YIGLVNSFAQKKKLS-VNYEQC-EPNSELPQRFICKCKIGQTMYGTG---SG---VTKQEAKQLAAKEAYQKLLKSP   69 (76)
T ss_dssp             HHHHHHHHHHHTTCC-EEEEEC-CCSSSSSCCEEEEEEESSCEEEEE---EE---SSHHHHHHHHHHHHHHHHHHSC
T ss_pred             ChHHHHHHHHHhCCC-CccccC-CcCCCCCCcEEEEEEECCEEeCCc---Cc---cHHHHHHHHHHHHHHHHHHccC
Confidence            799999999999874 478765 679999999999999999998753   44   9999999999999999998754

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.8e-19  Score=132.67  Aligned_cols=70  Identities=21%  Similarity=0.238  Sum_probs=61.0

Q ss_pred             CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      ...|||+.||||||+++|.+|.|+++.+   .|++.|++.|.|+|..|+.+     .+++|||+|||+||+.||..|.
T Consensus        24 ~~~~pKs~LqE~~Qk~~~~~P~Y~~~~~---~~~~~F~~~V~v~g~~~~s~-----~g~~SKK~AEq~AA~~AL~~Lg   93 (128)
T d1whna_          24 PQITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVAEQKYQST-----LWDKSKKLAEQTAAIVCLRSQG   93 (128)
T ss_dssp             TTCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEETTEEEEES-----SCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhcCCCCCeEEEeec---ccCCCCEEEEEECCeEeecc-----CCcccHHHHHHHHHHHHHHHhC
Confidence            4578999999999999999999997653   57889999999999998742     2358999999999999999994

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.5e-18  Score=116.51  Aligned_cols=70  Identities=26%  Similarity=0.259  Sum_probs=60.9

Q ss_pred             CCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           57 PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        57 ~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      +..+||++.||||||+     +.|++++++||+|.+.|+|.|.|+|..+ .+   .|   +|||+||+.||+.||..|-+
T Consensus         1 p~~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g---~G---~SKK~Ak~~AA~~aL~~L~~   68 (71)
T d2b7va1           1 PSGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EG---SG---RNKKLAKARAAQSALATVFN   68 (71)
T ss_dssp             CCSSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-EE---EE---SSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHccC-----CeEEEeeeeCCCCCCeEEEEEEECCEEE-Ee---cC---CCHHHHHHHHHHHHHHHHHc
Confidence            3578999999999874     4799999999999999999999999876 32   44   99999999999999999876


Q ss_pred             CC
Q 032079          137 LG  138 (147)
Q Consensus       137 ~g  138 (147)
                      ..
T Consensus        69 ~~   70 (71)
T d2b7va1          69 LH   70 (71)
T ss_dssp             HT
T ss_pred             cC
Confidence            54

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=1.5e-17  Score=113.72  Aligned_cols=72  Identities=18%  Similarity=0.079  Sum_probs=55.7

Q ss_pred             CCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEEC-CEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079           57 PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE-IESLNTILECFGAPQSKKKTAAEHAAEGALWYLE  135 (147)
Q Consensus        57 ~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~-~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~  135 (147)
                      ....|+|+.||||||+++.. |.|+++...|+.| +.|.+.|.|. +..++.     | .|+|||.|||.||+.||..+.
T Consensus         3 ~id~~~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~-~~f~v~~~v~~~~~~~~-----g-~g~SKK~AEq~AA~~aL~~~~   74 (81)
T d1t4oa_           3 KLDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVD-PNSIVECRVGDGTVLGT-----G-VGRNIKIAGIRAAENALRDKK   74 (81)
T ss_dssp             CCCTTHHHHHHHHHCCGGGC-CEEEEEECCCSSC-CCEEEEEECTTCCEEEE-----E-EESSHHHHHHHHHHHHHHCHH
T ss_pred             ccccCHHHHHHHHHhcCCCC-cEEEEeccCCCCC-CCEEEEEEEecCceEEe-----c-ccchhhHHHHHHHHHHHHhcc
Confidence            34679999999999999874 9999987655555 5677777774 444443     3 249999999999999998765


Q ss_pred             h
Q 032079          136 H  136 (147)
Q Consensus       136 ~  136 (147)
                      .
T Consensus        75 ~   75 (81)
T d1t4oa_          75 M   75 (81)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.2e-16  Score=108.11  Aligned_cols=68  Identities=24%  Similarity=0.258  Sum_probs=57.2

Q ss_pred             CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhCC
Q 032079           59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLG  138 (147)
Q Consensus        59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~g  138 (147)
                      ..|+.+.|+|+     .+.|.|+++.++||+|++.|+|.|.|+|..+. +   .|   +|||+|||.||+.||..|+...
T Consensus        11 ~~n~~~~L~e~-----~~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~-g---~G---~SKK~Aeq~AA~~aL~~L~~~~   78 (84)
T d2dmya1          11 LMNALMRLNQI-----RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYE-A---SG---PSKKTAKLHVAVKVLQAMGYPT   78 (84)
T ss_dssp             CTHHHHHHHHH-----SCSCCCEEEEEESCSSSCEEEEEEEETTEEEE-E---EE---SSHHHHHHHHHHHHHHHHTCCC
T ss_pred             ccCHHHHHHHh-----CCCCeEEEEEeeCCCCCCeEEEEEEECCEEEE-c---CC---CCHHHHHHHHHHHHHHHhCCCC
Confidence            46788888886     25689999999999999999999999997652 2   44   9999999999999999996443

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=5.1e-16  Score=104.35  Aligned_cols=67  Identities=25%  Similarity=0.243  Sum_probs=56.0

Q ss_pred             ChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079           61 SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH  136 (147)
Q Consensus        61 d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~  136 (147)
                      +||+.|+++-+-  +..|.|++++++||+|++.|+|.|.|+|..+ .+   .|   +|||+|||.||+.||+.|..
T Consensus         5 ~pK~~l~~L~e~--~~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g---~G---~SKK~Aeq~AA~~aL~~l~~   71 (73)
T d2b7ta1           5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG---SG---PTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EE---EE---SSHHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHhc--CCCCEEEEEEeeCCCCCceEEEEEEECCEEE-Ec---CC---CcHHHHHHHHHHHHHHHHhh
Confidence            567777776443  3568999999999999999999999999775 32   44   99999999999999999865