Citrus Sinensis ID: 032235

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEEVNYHWLLFIVLVQF
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEccEEEEEEEcccccccccEEEEEEccEEEEEEEcccccccccccccccccccEEEEEccEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHcccccccccccccccEEEEEEcccEEEEEEEccccccccEEEEEEEccEEEEEEccccccEccccccccEccccEEEEEccEEEEEEEEcccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maeklapekrhrflhngqtvfewDQTLDEINIyinlppnvhskqFYCKIQSKHIElgikgnppylnheltcpvktdssfwtleddvMHITLtkrdkgqtwaspimgqgqldpyvtDQEQKRLMLQRFQEEVNYHWLLFIVLVQF
Flexible Loop (DISEMBL)
maeklapekrhrflhngqTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEEVNYHWLLFIVLVQF
Low Complexity Region (SEG)
MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEEVNYHWLLFIVLVQF
Disordered region (IsUnstruct)
***********RFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEEVNYHWLLFIVLV**
Disordered Region (DISOPRED)
********************FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQL*************LQRFQEEVNYHWLLFIVLVQF
Disordered Region (DISEMBL)
********KRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEEVNYHWLLFIVLVQF
Disordered Region (DISPRO)
*********RHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEEVNYHWLLFIVLVQF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEEVNYHWLLFIVLVQF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q9CQ48	157	NudC domain-containing pr	yes	no	0.847	0.777	0.357	1e-15
Q8WVJ2	157	NudC domain-containing pr	yes	no	0.847	0.777	0.357	2e-15
Q5M823	157	NudC domain-containing pr	yes	no	0.75	0.687	0.375	5e-15
Q9LV09	304	Protein BOBBER 1 OS=Arabi	no	no	0.708	0.335	0.300	1e-10
Q9STN7	293	Protein BOBBER 2 OS=Arabi	no	no	0.708	0.348	0.300	1e-09
Q503C8	585	NudC domain-containing pr	no	no	0.770	0.189	0.256	5e-08
O35685	332	Nuclear migration protein	no	no	0.604	0.262	0.326	2e-06
Q9Y266	331	Nuclear migration protein	no	no	0.756	0.329	0.280	2e-06
Q7T0S2	586	NudC domain-containing pr	N/A	no	0.756	0.186	0.270	2e-06
Q17QG2	332	Nuclear migration protein	no	no	0.756	0.328	0.280	4e-06

>sp|Q9CQ48|NUDC2_MOUSE NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 4/126 (3%)

Query: 8   EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
           E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKG 64

Query: 68  ELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
           +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++L L
Sbjct: 65  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 124

Query: 125 QRFQEE 130
           +RFQ+E
Sbjct: 125 ERFQKE 130

Mus musculus (taxid: 10090)

>sp|Q8WVJ2|NUDC2_HUMAN NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 4/126 (3%)

Query: 8   EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
           E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE-ILKG 64

Query: 68  ELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
           +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++L L
Sbjct: 65  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 124

Query: 125 QRFQEE 130
           +RFQ+E
Sbjct: 125 ERFQKE 130

Homo sapiens (taxid: 9606)

>sp|Q5M823|NUDC2_RAT NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 4/112 (3%)

Query: 22  EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWT 81
           +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  +L      D   WT
Sbjct: 20  QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADEGTWT 78

Query: 82  LEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEE 130
           LED  M    +T TKRD    W S +  +   DP+V DQ Q++L L+RFQ+E
Sbjct: 79  LEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKE 130

Rattus norvegicus (taxid: 10116)

>sp|Q9LV09|BOB1_ARATH Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
           + W Q L E+ + I +P    ++   C+I+   +++G+KG  P ++ EL   VK D  +W
Sbjct: 147 YSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYW 206

Query: 81  TLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
            +ED  V+ I LTK D+ + W   + G+ ++D    + E  +L
Sbjct: 207 NIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKL 249

Small heat shock protein required for the establishment of auxin gradients and for patterning of the apical domain of the embryo. Involved in the specification of the cotyledon primordia. Also required for normal inflorescence and floral meristem function, normal developmental patterning and thermotolerance. Acts as a molecular chaperone.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STN7|BOB2_ARATH Protein BOBBER 2 OS=Arabidopsis thaliana GN=BOB2 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
           + W Q L E+ I I +P    S+   C+I+   +++G+KG    ++ E    VK D  FW
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  TLEDDVM-HITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
            +ED  M  + LTK+D+ + W   + G+ ++D    + E  +L
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKL 238

Small heat shock protein required for the establishment of auxin gradients and for patterning of the apical domain of the embryo. Involved in the specification of the cotyledon primordia. Also required for normal inflorescence and floral meristem function, normal developmental patterning and thermotolerance. Acts as a molecular chaperone.

Arabidopsis thaliana (taxid: 3702)

>sp|Q503C8|NUDC1_DANRE NudC domain-containing protein 1 OS=Danio rerio GN=nudcd1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 16  NGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKT 75
           N   ++ W QT +++ + + LP          K+    + + +    P L+ +L  PV  
Sbjct: 276 NSDPIYFWQQTEEDVTLCVRLPEGTTKDDIRFKLTVDCLRVRVGDYAPLLDGQLFAPVDP 335

Query: 76  DSSFWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRF 127
           ++S WT+ DD  + ++L KR +G  W+  ++G  + + Y+ + EQK  + QR 
Sbjct: 336 EASTWTMNDDKSLEVSLQKRSEGPLWSEVVLGDRRGE-YLMNDEQKSQLQQRL 387

Danio rerio (taxid: 7955)

>sp|O35685|NUDC_MOUSE Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 14  LHNGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
           L NG  +  + W QTL E+++ +   +   +  K     IQ +H+ +G+KG PP ++ EL
Sbjct: 164 LGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGEL 223

Query: 70  TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTW 100
              VK + S W +ED  V+ + L K +K + W
Sbjct: 224 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWW 255

Plays a role in neurogenesis and neuronal migration. Necessary for correct formation of mitotic spindles and chromosome separation during mitosis.

Mus musculus (taxid: 10090)

>sp|Q9Y266|NUDC_HUMAN Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 14  LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
           L NG  +  + W QTL E+++ +    N  +  K     IQ +H+ +G+KG P  ++ EL
Sbjct: 163 LGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGEL 222

Query: 70  TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
              VK + S W +ED  V+ + L K +K + W+  +    +++    + E  +L
Sbjct: 223 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKL 276

Plays a role in neurogenesis and neuronal migration (By similarity). Necessary for correct formation of mitotic spindles and chromosome separation during mitosis. Necessary for cytokinesis and cell proliferation.

Homo sapiens (taxid: 9606)

>sp|Q7T0S2|NUDC1_XENLA NudC domain-containing protein 1 OS=Xenopus laevis GN=nudcd1 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 2/111 (1%)

Query: 18  QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDS 77
           + ++ W QT +E+ +   LP     +    K     I++ IK    +L  +L   V  +S
Sbjct: 277 EPLYNWQQTGEEVTLTFLLPEGKTKEDLNIKFLPGEIDISIKDQGTFLKGQLYSDVDCES 336

Query: 78  SFWTL-EDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRF 127
           S W + E   + +TLTKR+ G TWA  ++   Q + Y+ D  Q   + ++ 
Sbjct: 337 SAWIMKEGRGVEVTLTKREPGCTWAELVIADKQGE-YIADPAQTAAIAEKL 386

Xenopus laevis (taxid: 8355)

>sp|Q17QG2|NUDC_BOVIN Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 14  LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
           L NG  +  + W QTL E+++ +    N  +  K     IQ +H+ +G+KG P  ++ EL
Sbjct: 164 LGNGADLPSYRWTQTLSELDLAVPFCVNFRLKGKDVVVDIQRRHLRVGLKGQPAIVDGEL 223

Query: 70  TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
              VK + S W +ED  V+ + L K +K + W+  +    +++    + E  +L
Sbjct: 224 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKL 277

Plays a role in neurogenesis and neuronal migration. Necessary for correct formation of mitotic spindles and chromosome separation during mitosis.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
449467493	156	PREDICTED: nudC domain-containing protei	0.902	0.833	0.9	1e-65
351723663	158	uncharacterized protein LOC100306544 [Gl	0.902	0.822	0.9	2e-65
449520136	175	PREDICTED: nudC domain-containing protei	0.993	0.817	0.810	4e-65
388511927	158	unknown [Lotus japonicus]	0.902	0.822	0.907	6e-65
351723483	158	uncharacterized protein LOC100499970 [Gl	0.902	0.822	0.9	8e-65
255569345	158	NudC domain-containing protein, putative	0.902	0.822	0.869	5e-64
224059294	158	predicted protein [Populus trichocarpa]	0.902	0.822	0.853	6e-64
388522565	158	unknown [Lotus japonicus]	0.902	0.822	0.892	3e-63
388501914	158	unknown [Medicago truncatula]	0.902	0.822	0.884	7e-63
15237742	158	nudC domain-containing protein [Arabidop	0.902	0.822	0.838	4e-61

>gi|449467493|ref|XP_004151457.1| PREDICTED: nudC domain-containing protein 2-like [Cucumis sativus]

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/130 (90%), Positives = 124/130 (95%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH FLHNGQ VFEWDQTL+E+NIYINLPPNV+SKQFYCKIQS+H+ELGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNHELTCPVKTDSSFWTLEDD+MHITL KRDKGQTWASPI GQGQLDPY +D EQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEE 130
           RLMLQRFQEE
Sbjct: 121 RLMLQRFQEE 130

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723663|ref|NP_001236519.1| uncharacterized protein LOC100306544 [Glycine max] gi|255628837|gb|ACU14763.1| unknown [Glycine max]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/130 (90%), Positives = 123/130 (94%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH F+HNGQ VFEWDQTLDE+NIYI LPPNVHSKQFYCKIQSKH+ELGIKG
Sbjct: 1   MAEKLAPEKRHSFVHNGQKVFEWDQTLDEVNIYITLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+LT PVKTDSSFWTLEDD+MHITL KRDKGQTWASPI+GQGQLDPY TD EQK
Sbjct: 61  NPPYLNHDLTSPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEE 130
           RLMLQRFQEE
Sbjct: 121 RLMLQRFQEE 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520136|ref|XP_004167090.1| PREDICTED: nudC domain-containing protein 2-like [Cucumis sativus]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 120/148 (81%), Positives = 132/148 (89%), Gaps = 5/148 (3%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH FLHNGQ VFEWDQTL+E+NIYINLPPNV+SKQFYCKIQS+H+ELGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNHELTCPVKTDSSFWTLEDD+MHITL KRDKGQTWASPI GQGQLDPY +D EQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQE---EVNYHWLLF--IVLVQ 143
           RLMLQRF+    ++ +H L F   VL+Q
Sbjct: 121 RLMLQRFKRRTLDLTFHKLSFQATVLIQ 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511927|gb|AFK44025.1| unknown [Lotus japonicus]

 Score =  251 bits (642), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 118/130 (90%), Positives = 122/130 (93%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH FLHNGQ VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG
Sbjct: 1   MAEKLAPEKRHIFLHNGQKVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+ T PVKTDSSFWTLEDD+MH+TL KRDKGQTWASPI+GQGQLD Y TD EQK
Sbjct: 61  NPPYLNHDFTSPVKTDSSFWTLEDDIMHVTLQKRDKGQTWASPILGQGQLDAYTTDIEQK 120

Query: 121 RLMLQRFQEE 130
           RLMLQRFQEE
Sbjct: 121 RLMLQRFQEE 130

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723483|ref|NP_001234977.1| uncharacterized protein LOC100499970 [Glycine max] gi|255628127|gb|ACU14408.1| unknown [Glycine max]

 Score =  251 bits (640), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 117/130 (90%), Positives = 122/130 (93%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH F+HNGQ VFEWDQTLDE+NIYI LPPNVHSKQFYCKIQSKH+ELGIKG
Sbjct: 1   MAEKLAPEKRHGFVHNGQKVFEWDQTLDEVNIYIALPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+LT PVKTDSSFWTLEDD+MHITL KRDKGQTWASPI GQGQLDPY TD EQK
Sbjct: 61  NPPYLNHDLTSPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPISGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEE 130
           RLMLQRFQEE
Sbjct: 121 RLMLQRFQEE 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569345|ref|XP_002525640.1| NudC domain-containing protein, putative [Ricinus communis] gi|223535076|gb|EEF36758.1| NudC domain-containing protein, putative [Ricinus communis]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 113/130 (86%), Positives = 123/130 (94%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH F+HNGQTVFEWDQTLDE+N+YINLPPNVHSKQFYCKIQSKH+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFVHNGQTVFEWDQTLDEVNMYINLPPNVHSKQFYCKIQSKHLEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+L+CPVKTDSSFWTLED +MHITL KRDKG TW+SP+ GQGQLDPY TD EQK
Sbjct: 61  NPPYLNHDLSCPVKTDSSFWTLEDGIMHITLQKRDKGLTWSSPVFGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEE 130
           RLMLQRFQEE
Sbjct: 121 RLMLQRFQEE 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059294|ref|XP_002299811.1| predicted protein [Populus trichocarpa] gi|222847069|gb|EEE84616.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (633), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 111/130 (85%), Positives = 125/130 (96%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH F+H+G+T+FEWDQTL+E+NIYINLPPNVHSKQFYCKIQSKH+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFVHDGKTIFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSKHVEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+LTCPVKTDSSFWTLEDD+MHIT+ KRDKGQTWASPI+G+GQLD Y +D EQK
Sbjct: 61  NPPYLNHDLTCPVKTDSSFWTLEDDIMHITMQKRDKGQTWASPILGEGQLDAYSSDLEQK 120

Query: 121 RLMLQRFQEE 130
           RLMLQRFQEE
Sbjct: 121 RLMLQRFQEE 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522565|gb|AFK49344.1| unknown [Lotus japonicus]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 116/130 (89%), Positives = 120/130 (92%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH FLHNGQ VFEWDQTLDEINIY NLPPNVHSKQFY KIQSKHIELGIKG
Sbjct: 1   MAEKLAPEKRHIFLHNGQKVFEWDQTLDEINIYTNLPPNVHSKQFYYKIQSKHIELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+ T PVKTDSSFWTLEDD+MH+TL KRDKGQTWASPI+GQGQLD Y TD EQK
Sbjct: 61  NPPYLNHDFTSPVKTDSSFWTLEDDIMHVTLQKRDKGQTWASPILGQGQLDAYTTDIEQK 120

Query: 121 RLMLQRFQEE 130
           RLMLQRFQEE
Sbjct: 121 RLMLQRFQEE 130

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501914|gb|AFK39023.1| unknown [Medicago truncatula]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 115/130 (88%), Positives = 120/130 (92%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH FLHNGQ VFEWDQTLDE+NIYINLPPNVHSK FYC IQSKHIELGIKG
Sbjct: 1   MAEKLAPEKRHIFLHNGQKVFEWDQTLDEVNIYINLPPNVHSKLFYCTIQSKHIELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPP+LNH+LT PVKTDSSFWTLEDD+MHITL KRDKGQTW SPI+GQGQLD Y TD EQK
Sbjct: 61  NPPFLNHDLTSPVKTDSSFWTLEDDIMHITLNKRDKGQTWPSPILGQGQLDAYSTDLEQK 120

Query: 121 RLMLQRFQEE 130
           RLMLQRFQEE
Sbjct: 121 RLMLQRFQEE 130

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237742|ref|NP_200682.1| nudC domain-containing protein [Arabidopsis thaliana] gi|18389274|gb|AAL67080.1| unknown protein [Arabidopsis thaliana] gi|21436159|gb|AAM51326.1| unknown protein [Arabidopsis thaliana] gi|332009710|gb|AED97093.1| nudC domain-containing protein [Arabidopsis thaliana]

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/130 (83%), Positives = 120/130 (92%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH F+HNGQ VFEWDQTL+E+N+YI LPPNVH K F+CKIQSKHIE+GIKG
Sbjct: 1   MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+L+ PVKTD SFWTLEDD+MHITL KR+KGQTWASPI+GQGQLDPY TD EQK
Sbjct: 61  NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEE 130
           RLMLQRFQEE
Sbjct: 121 RLMLQRFQEE 130

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:2178888	158	AT5G58740 "AT5G58740" [Arabido	0.902	0.822	0.838	3.1e-60
UNIPROTKB|E2RSY6	192	NUDCD2 "Uncharacterized protei	0.861	0.645	0.364	2.3e-16
UNIPROTKB|Q8WVJ2	157	NUDCD2 "NudC domain-containing	0.861	0.789	0.364	2.3e-16
UNIPROTKB|F1RR73	157	NUDCD2 "Uncharacterized protei	0.861	0.789	0.364	2.3e-16
MGI|MGI:1277103	157	Nudcd2 "NudC domain containing	0.861	0.789	0.364	2.3e-16
ZFIN|ZDB-GENE-040801-49	157	nudcd2 "NudC domain containing	0.743	0.681	0.396	2.3e-16
UNIPROTKB|Q32KU8	157	NUDCD2 "NudC domain containing	0.861	0.789	0.364	3.7e-16
RGD|1307203	157	Nudcd2 "NudC domain containing	0.75	0.687	0.375	4.7e-16
UNIPROTKB|E1BUG9	157	NUDCD2 "Uncharacterized protei	0.743	0.681	0.378	3.3e-15
TAIR|locus:2178431	304	BOB1 "BOBBER1" [Arabidopsis th	0.708	0.335	0.300	2e-12

TAIR|locus:2178888 AT5G58740 "AT5G58740" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 109/130 (83%), Positives = 120/130 (92%)

Query:     1 MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
             MAEKLAPEKRH F+HNGQ VFEWDQTL+E+N+YI LPPNVH K F+CKIQSKHIE+GIKG
Sbjct:     1 MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query:    61 NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
             NPPYLNH+L+ PVKTD SFWTLEDD+MHITL KR+KGQTWASPI+GQGQLDPY TD EQK
Sbjct:    61 NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query:   121 RLMLQRFQEE 130
             RLMLQRFQEE
Sbjct:   121 RLMLQRFQEE 130

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2RSY6 NUDCD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 47/129 (36%), Positives = 69/129 (53%)

Query:     6 AP-EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPY 64
             AP E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    
Sbjct:    38 APFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-I 96

Query:    65 LNHELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKR 121
             L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++
Sbjct:    97 LKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRK 156

Query:   122 LMLQRFQEE 130
             L L+RFQ+E
Sbjct:   157 LTLERFQKE 165

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q8WVJ2 NUDCD2 "NudC domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 47/129 (36%), Positives = 69/129 (53%)

Query:     6 AP-EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPY 64
             AP E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    
Sbjct:     3 APFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE-I 61

Query:    65 LNHELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKR 121
             L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++
Sbjct:    62 LKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRK 121

Query:   122 LMLQRFQEE 130
             L L+RFQ+E
Sbjct:   122 LTLERFQKE 130

GO:0005737 "cytoplasm" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005622 "intracellular" evidence=IDA

UNIPROTKB|F1RR73 NUDCD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 47/129 (36%), Positives = 69/129 (53%)

Query:     6 AP-EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPY 64
             AP E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    
Sbjct:     3 APFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-I 61

Query:    65 LNHELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKR 121
             L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++
Sbjct:    62 LKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRK 121

Query:   122 LMLQRFQEE 130
             L L+RFQ+E
Sbjct:   122 LTLERFQKE 130

GO:0005622 "intracellular" evidence=IEA

MGI|MGI:1277103 Nudcd2 "NudC domain containing 2" [Mus musculus (taxid:10090)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 47/129 (36%), Positives = 69/129 (53%)

Query:     6 AP-EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPY 64
             AP E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    
Sbjct:     3 APFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-I 61

Query:    65 LNHELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKR 121
             L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++
Sbjct:    62 LKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRK 121

Query:   122 LMLQRFQEE 130
             L L+RFQ+E
Sbjct:   122 LTLERFQKE 130

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040801-49 nudcd2 "NudC domain containing 2" [Danio rerio (taxid:7955)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 44/111 (39%), Positives = 64/111 (57%)

Query:    23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTL 82
             W QT++E+ I +N+PP   +K+  C I SK IEL +K    +   +L      D + WTL
Sbjct:    21 WYQTMEEVYIEVNVPPGTSAKEIKCNIGSKQIELRVKDQQIFKG-KLFGSTVCDEATWTL 79

Query:    83 EDD-VMHITL--TKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEE 130
             ED  ++ I L  T R+ G  W S + G+   DP+V DQ Q++L L+RFQ E
Sbjct:    80 EDKKLIRIVLMKTNREAGNCWQSLLEGEFMADPWVQDQMQRKLTLERFQRE 130

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q32KU8 NUDCD2 "NudC domain containing 2" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 47/129 (36%), Positives = 68/129 (52%)

Query:     6 AP-EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPY 64
             AP E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    
Sbjct:     3 APFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-I 61

Query:    65 LNHELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKR 121
             L  +L      D   WTLED  M    +T TKRD    W S +      DP+V DQ Q++
Sbjct:    62 LKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESDYAADPWVQDQMQRK 121

Query:   122 LMLQRFQEE 130
             L L+RFQ+E
Sbjct:   122 LTLERFQKE 130

GO:0005622 "intracellular" evidence=IEA

RGD|1307203 Nudcd2 "NudC domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 42/112 (37%), Positives = 62/112 (55%)

Query:    22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWT 81
             +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  +L      D   WT
Sbjct:    20 QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADEGTWT 78

Query:    82 LEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEE 130
             LED  M    +T TKRD    W S +  +   DP+V DQ Q++L L+RFQ+E
Sbjct:    79 LEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKE 130

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB|E1BUG9 NUDCD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 42/111 (37%), Positives = 60/111 (54%)

Query:    23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTL 82
             W QTL+E+ I + +PP   +K   C +QS+ + L + G    L  +L      D   WTL
Sbjct:    21 WYQTLEEVFIEVQVPPGTRAKDVCCSLQSRRVALSVCGRE-VLQGKLFDSTIADEGTWTL 79

Query:    83 ED-DVMHITL--TKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEE 130
             ED  ++ I L  T RD G  W S +  +   DP+V DQ Q++L L+RFQ E
Sbjct:    80 EDRKLIRIVLMKTNRDAGNCWTSLLENEYAADPWVQDQMQRKLTLERFQRE 130

GO:0005622 "intracellular" evidence=IEA

TAIR|locus:2178431 BOB1 "BOBBER1" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 31/103 (30%), Positives = 56/103 (54%)

Query:    21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
             + W Q L E+ + I +P    ++   C+I+   +++G+KG  P ++ EL   VK D  +W
Sbjct:   147 YSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYW 206

Query:    81 TLEDD-VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
              +ED  V+ I LTK D+ + W   + G+ ++D    + E  +L
Sbjct:   207 NIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKL 249

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=RCA;IDA

GO:0009408 "response to heat" evidence=IEP;RCA;IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010450 "inflorescence meristem growth" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0048448 "stamen morphogenesis" evidence=IMP

GO:0048833 "specification of floral organ number" evidence=IMP

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	144
cd06467	85	cd06467, p23_NUDC_like, p23_like domain of NUD (nu	2e-33
pfam04969	78	pfam04969, CS, CS domain	1e-20
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	3e-20
cd06494	93	cd06494, p23_NUDCD2_like, p23-like NUD (nuclear di	2e-16
cd06492	87	cd06492, p23_mNUDC_like, p23-like NUD (nuclear dis	1e-12
cd06493	85	cd06493, p23_NUDCD1_like, p23_NUDCD1: p23-like NUD	8e-11
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	5e-08

>gnl|CDD|107224 cd06467, p23_NUDC_like, p23_like domain of NUD (nuclear distribution) C and similar proteins

 Score =  112 bits (282), Expect = 2e-33
 Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
           + W QTLDE+ + I LP    SK    +I  KH+++G+KG  P L+ EL   VK D S W
Sbjct: 1   YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTW 60

Query: 81  TLED-DVMHITLTKRDKGQTWASPI 104
           TLED  ++ ITL KR++G+ W S +
Sbjct: 61  TLEDGKLLEITLEKRNEGEWWPSLV 85

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation. This group also includes the human broadly immunogenic tumor associated antigen, CML66, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of CML66 is limited to testis and heart. Length = 85

>gnl|CDD|218355 pfam04969, CS, CS domain

 Score = 79.2 bits (196), Expect = 1e-20
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDS 77
          ++W QTLDE+ I I L      K    +I+ + +++ IKG       L+ EL  P+  + 
Sbjct: 3  YDWYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGGKEYLLDGELFGPIDPEE 62

Query: 78 SFWTLEDDVMHITLTK 93
          S W +ED  + ITL K
Sbjct: 63 SSWKIEDTKVEITLKK 78

The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans but are found in separate proteins in plants; this is thought to be indicative of an interaction between CS and CHORD. It has been suggested that the CS domain is a binding module for HSP90, implying that CS domain-containing proteins are involved in recruiting heat shock proteins to multiprotein assemblies. Length = 78

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 78.9 bits (195), Expect = 3e-20
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 23  WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSF 79
           W QTLDE+ I I L  +V  K    +   K + + +K   G    L  EL  P+  + S 
Sbjct: 1   WYQTLDEVTITIPLK-DVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESK 59

Query: 80  WTLEDDVMHITLTKRDKGQTWAS 102
           WT+ED  + ITL K++ G+ W  
Sbjct: 60  WTVEDRKIEITLKKKEPGEWWPR 82

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|107243 cd06494, p23_NUDCD2_like, p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

 Score = 69.4 bits (170), Expect = 2e-16
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 23  WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTL 82
           W QT+DE+ I +N+PP   +K   CK+ S+ I L +KG    L  +L   V  D   WTL
Sbjct: 10  WYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ-EVLKGKLFDSVVADECTWTL 68

Query: 83  ED-DVMHITLTK--RDKGQTWAS 102
           ED  ++ I LTK  RD G  W S
Sbjct: 69  EDRKLIRIVLTKSNRDAGNCWKS 91

Little is known about the function of the proteins in this subgroup. Length = 93

>gnl|CDD|107241 cd06492, p23_mNUDC_like, p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

 Score = 58.9 bits (143), Expect = 1e-12
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 21  FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS 78
           + W QTL E+ + +   +   +  K     IQ KH+++G+KG PP ++ EL   VK + S
Sbjct: 1   YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEES 60

Query: 79  FWTLED-DVMHITLTKRDKGQTWA 101
            W +ED  V+ + L K +K + W+
Sbjct: 61  SWLIEDGKVVTVNLEKINKMEWWS 84

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation. Length = 87

>gnl|CDD|107242 cd06493, p23_NUDCD1_like, p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

 Score = 54.5 bits (131), Expect = 8e-11
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
           + W QT +++ + I LP +   +    K    HI + +K   P L  +L   +  +SS W
Sbjct: 1   YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTW 60

Query: 81  TL-EDDVMHITLTKRDKGQTWA 101
            + E+  + ++L K+D+G TW 
Sbjct: 61  IIKENKSLEVSLIKKDEGPTWP 82

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart. Length = 85

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 46.8 bits (112), Expect = 5e-08
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK----------GNPPYLNHELTCP 72
          W QT DE+ + ++LP  V  +    +++   + +  K                + EL   
Sbjct: 1  WYQTDDEVVVTVDLP-GVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPED 59

Query: 73 VKTDSSFWTLEDDVMHITLTK 93
          V  + S  +LE+ V+ ITL K
Sbjct: 60 VDPEKSKASLENGVLEITLPK 80

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
KOG2265	179	consensus Nuclear distribution protein NUDC [Signa	99.97
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	99.95
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	99.93
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	99.93
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	99.93
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	99.9
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	99.85
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	99.78
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	99.78
cd06463	84	p23_like Proteins containing this p23_like domain	99.76
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	99.72
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.71
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	99.7
cd06488	87	p23_melusin_like p23_like domain similar to the C-	99.67
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	99.67
KOG4379	596	consensus Uncharacterized conserved protein (tumor	99.6
KOG1309	196	consensus Suppressor of G2 allele of skp1 [Signal	99.44
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.4
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	99.36
cd00298	80	ACD_sHsps_p23-like This domain family includes the	99.13
KOG3158	180	consensus HSP90 co-chaperone p23 [Posttranslationa	99.06
KOG3260	224	consensus Calcyclin-binding protein CacyBP [Signal	98.82
KOG1667	320	consensus Zn2+-binding protein Melusin/RAR1, conta	98.64
COG0071	146	IbpA Molecular chaperone (small heat shock protein	98.07
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	97.92
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	97.71
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	97.69
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	97.59
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	97.52
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	97.21
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	97.15
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	97.11
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	97.09
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	97.0
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	96.99
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	96.99
PRK10743	137	heat shock protein IbpA; Provisional	96.97
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	96.78
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	96.72
PRK11597	142	heat shock chaperone IbpB; Provisional	96.71
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	96.0
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	95.53
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	94.88
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	94.71
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	89.89

>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]

Probab=99.97  E-value=4.3e-31  Score=200.02  Aligned_cols=133  Identities=37%  Similarity=0.580  Sum_probs=118.1

Q ss_pred             CCCCCCcccccceecCCCCcEEEEeeCCEEEEEEECCCCC-CCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCce
Q 032235            1 MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSF   79 (144)
Q Consensus         1 ~~~~~~~~~r~~~~~ng~~~Y~W~Qt~~~V~V~v~lp~~~-~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s~   79 (144)
                      |.+.+.++.|.+.++++.+.|.|+||..+|.|.|+||+++ ++++|.|.+..+||.|+++|++++++|+|+++|++|+|+
T Consensus         1 ~~~~~~eE~p~~~ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG~L~~~vk~des~   80 (179)
T KOG2265|consen    1 EDEKPKEEKPNSGNGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDGELSHSVKVDEST   80 (179)
T ss_pred             CCccccccCCcccCCccccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceecCccccccccccce
Confidence            3466778889999999999999999999999999999999 999999999999999999999889999999999999999


Q ss_pred             EEeeCCE-EEEEEEECCCCCCcCcccCCCCCCChhhHHH-H-HHHHHHHHHHHhCcc
Q 032235           80 WTLEDDV-MHITLTKRDKGQTWASPIMGQGQLDPYVTDQ-E-QKRLMLQRFQEEVNY  133 (144)
Q Consensus        80 W~l~~~~-l~I~L~K~~~~~~W~~L~~g~~~id~~~~~e-~-~~~~~~e~~~~~~p~  133 (144)
                      |+|++++ +.++|+|.+.+.||.+|++|+++||+...+. . +.+++.+++|+++|+
T Consensus        81 WtiEd~k~i~i~l~K~~~~eWW~~ll~gep~ID~~ki~~e~skl~dldeEtra~vek  137 (179)
T KOG2265|consen   81 WTIEDGKMIVILLKKSNKMEWWDSLLEGEPEIDTKKIEPEESKLSDLDEETRATVEK  137 (179)
T ss_pred             EEecCCEEEEEEeeccchHHHHHHHHcCCCCCCccccChhhhhhhhccHHHHHhhhc
Confidence            9999985 7888888887899999999999999875544 3 556777777777664

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=99.95  E-value=1e-27  Score=169.26  Aligned_cols=94  Identities=21%  Similarity=0.537  Sum_probs=86.3

Q ss_pred             CCcEEEEeeCCEEEEEEECCCC-CCCCceEEEEeccEEEEEecC---CCceecCCCCCCcccCCceEEeeCC-EEEEEEE
Q 032235           18 QTVFEWDQTLDEINIYINLPPN-VHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDD-VMHITLT   92 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~-~~~kdv~V~~~~~~l~V~v~g---~~~~l~g~L~~~I~~d~s~W~l~~~-~l~I~L~   92 (144)
                      .+.|+|+||.++|+|+|++|++ ++++|++|+|++++|+|++++   +.++++|+||++|++|+|+|+++++ .|+|+|.
T Consensus         4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~   83 (102)
T cd06495           4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLS   83 (102)
T ss_pred             CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEE
Confidence            4689999999999999999998 579999999999999999974   3479999999999999999999996 5899999


Q ss_pred             ECCCCCCcCcccCCCCCCCh
Q 032235           93 KRDKGQTWASPIMGQGQLDP  112 (144)
Q Consensus        93 K~~~~~~W~~L~~g~~~id~  112 (144)
                      |.+. .||++|++|+++||.
T Consensus        84 K~~~-~wW~~v~~g~~~iD~  102 (102)
T cd06495          84 KCSE-VWWNAVLKGEEEIDI  102 (102)
T ss_pred             ECCC-cccchhhCCCCcCCC
Confidence            9964 799999999999984

Little is known about the function of the proteins in this subgroup.

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=99.93  E-value=4.8e-26  Score=156.33  Aligned_cols=84  Identities=33%  Similarity=0.682  Sum_probs=79.5

Q ss_pred             EEEEeeCCEEEEEEECCCC--CCCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCceEEeeCC-EEEEEEEECCCC
Q 032235           21 FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHITLTKRDKG   97 (144)
Q Consensus        21 Y~W~Qt~~~V~V~v~lp~~--~~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s~W~l~~~-~l~I~L~K~~~~   97 (144)
                      |+|+||.++|+|+|++|.+  ++++|++|++++++|+|+++|++++++|+||++|++|+|+|+++++ .|+|+|.|++++
T Consensus         1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~~~~   80 (87)
T cd06492           1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKINKM   80 (87)
T ss_pred             CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccccEEEEeCCCEEEEEEEECCCC
Confidence            8999999999999999987  8999999999999999999997679999999999999999999996 699999999888


Q ss_pred             CCcCccc
Q 032235           98 QTWASPI  104 (144)
Q Consensus        98 ~~W~~L~  104 (144)
                      +||++|+
T Consensus        81 ~wW~~l~   87 (87)
T cd06492          81 EWWSRLV   87 (87)
T ss_pred             ccccccC
Confidence            9999984

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=99.93  E-value=2.1e-25  Score=155.05  Aligned_cols=86  Identities=38%  Similarity=0.657  Sum_probs=80.6

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCceEEeeCCE-EEEEEEECCC
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDV-MHITLTKRDK   96 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s~W~l~~~~-l~I~L~K~~~   96 (144)
                      ++.|.|+||.++|+|+|++|++++++|++|+|++++|+|.++|+ .+++|+||++|++|+|+|++++++ |+|+|.|.+.
T Consensus         5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~-~~l~G~L~~~I~~destWtled~k~l~I~L~K~~~   83 (93)
T cd06494           5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ-EVLKGKLFDSVVADECTWTLEDRKLIRIVLTKSNR   83 (93)
T ss_pred             CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE-EEEcCcccCccCcccCEEEEECCcEEEEEEEeCCC
Confidence            57999999999999999999999999999999999999999986 599999999999999999999998 7999999964


Q ss_pred             --CCCcCccc
Q 032235           97 --GQTWASPI  104 (144)
Q Consensus        97 --~~~W~~L~  104 (144)
                        |++|++|+
T Consensus        84 ~~~~~W~sl~   93 (93)
T cd06494          84 DAGNCWKSLL   93 (93)
T ss_pred             CCCccccccC
Confidence              46999985

Little is known about the function of the proteins in this subgroup.

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=99.93  E-value=3e-25  Score=151.10  Aligned_cols=84  Identities=26%  Similarity=0.648  Sum_probs=79.0

Q ss_pred             EEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCceEEeeCC-EEEEEEEECCCCCC
Q 032235           21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHITLTKRDKGQT   99 (144)
Q Consensus        21 Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s~W~l~~~-~l~I~L~K~~~~~~   99 (144)
                      |.|+||.++|+|+|++|++++++|++|+|++++|.|.+++++++++|+||++|++|+|+|+++++ +|+|+|.|+++|.+
T Consensus         1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~~~~   80 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDEGPT   80 (85)
T ss_pred             CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCCCcc
Confidence            89999999999999999999999999999999999999866578999999999999999999876 69999999988889


Q ss_pred             cCccc
Q 032235          100 WASPI  104 (144)
Q Consensus       100 W~~L~  104 (144)
                      |++|+
T Consensus        81 W~~L~   85 (85)
T cd06493          81 WPELV   85 (85)
T ss_pred             ccccC
Confidence            99985

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=99.90  E-value=5.2e-23  Score=138.81  Aligned_cols=84  Identities=45%  Similarity=0.830  Sum_probs=79.5

Q ss_pred             EEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCceEEeeC-CEEEEEEEECCCCCC
Q 032235           21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED-DVMHITLTKRDKGQT   99 (144)
Q Consensus        21 Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s~W~l~~-~~l~I~L~K~~~~~~   99 (144)
                      |.|+||.++|+|+|++|++++++|++|++++++|+|++.|+.++++|.||++|++++|+|++++ ++++|+|.|+++|.+
T Consensus         1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~~~~   80 (85)
T cd06467           1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNEGEW   80 (85)
T ss_pred             CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCCCcc
Confidence            8999999999999999999999999999999999999986557899999999999999999999 899999999987679


Q ss_pred             cCccc
Q 032235          100 WASPI  104 (144)
Q Consensus       100 W~~L~  104 (144)
                      |++|+
T Consensus        81 W~~L~   85 (85)
T cd06467          81 WPSLV   85 (85)
T ss_pred             ccccC
Confidence            99986

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=99.85  E-value=7.8e-21  Score=134.40  Aligned_cols=90  Identities=20%  Similarity=0.370  Sum_probs=80.4

Q ss_pred             CcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC----CceecCCCCCCcccCCceEEeeCCEEEEEEEEC
Q 032235           19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN----PPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (144)
Q Consensus        19 ~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~----~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~   94 (144)
                      |.|.|+||.++|+|+|++|..   +++.|.|++++|.|++.+.    ...++++||++|+|++|+|++.+++|+|+|.|+
T Consensus         1 p~~~W~Qt~~~V~i~i~~~~~---~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~   77 (108)
T cd06465           1 PPVLWAQRSDVVYLTIELPDA---KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKK   77 (108)
T ss_pred             CceeeeECCCEEEEEEEeCCC---CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEEC
Confidence            579999999999999999953   8999999999999988642    146899999999999999999999999999999


Q ss_pred             CCCCCcCcccCCCCCCC
Q 032235           95 DKGQTWASPIMGQGQLD  111 (144)
Q Consensus        95 ~~~~~W~~L~~g~~~id  111 (144)
                      +.+.+|++|.+++++++
T Consensus        78 ~~~~~W~~L~~~~~k~~   94 (108)
T cd06465          78 EAGEYWPRLTKEKGKLP   94 (108)
T ss_pred             CCCCCCcccccCCCCCC
Confidence            73469999999998876

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=99.78  E-value=1.9e-18  Score=118.41  Aligned_cols=85  Identities=22%  Similarity=0.418  Sum_probs=73.1

Q ss_pred             CcEEEEeeCCEEEEEEECCCCCC--CCceEEEEeccEEEEEecC---CCc-eecCCCCCCcccCCceEEeeCCEEEEEEE
Q 032235           19 TVFEWDQTLDEINIYINLPPNVH--SKQFYCKIQSKHIELGIKG---NPP-YLNHELTCPVKTDSSFWTLEDDVMHITLT   92 (144)
Q Consensus        19 ~~Y~W~Qt~~~V~V~v~lp~~~~--~kdv~V~~~~~~l~V~v~g---~~~-~l~g~L~~~I~~d~s~W~l~~~~l~I~L~   92 (144)
                      .+|.|+||.++|+|+|.+|....  ++|+.|+|++++|.|.+.+   .+. +..+.||++|+|++|+|++.+++|+|.|.
T Consensus         2 ~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~   81 (92)
T cd06468           2 TKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA   81 (92)
T ss_pred             ceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEE
Confidence            47999999999999999995543  5999999999999998864   222 34457999999999999999999999999


Q ss_pred             ECCCCCCcCccc
Q 032235           93 KRDKGQTWASPI  104 (144)
Q Consensus        93 K~~~~~~W~~L~  104 (144)
                      |+++ .+|++|.
T Consensus        82 K~~~-~~W~~L~   92 (92)
T cd06468          82 KKKE-KKWESLT   92 (92)
T ss_pred             eCCC-CccCccC
Confidence            9987 6999983

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=99.78  E-value=2.6e-18  Score=112.90  Aligned_cols=75  Identities=28%  Similarity=0.534  Sum_probs=66.3

Q ss_pred             CcEEEEeeCCEEEEEEEC-CCCCCCCceEEEEeccEEEEEec-C--CCceecCCCCCCcccCCceEEeeCCEEEEEEEE
Q 032235           19 TVFEWDQTLDEINIYINL-PPNVHSKQFYCKIQSKHIELGIK-G--NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTK   93 (144)
Q Consensus        19 ~~Y~W~Qt~~~V~V~v~l-p~~~~~kdv~V~~~~~~l~V~v~-g--~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K   93 (144)
                      |+|.|+||.++|+|+|++ |..++++|++|++++++|.|.+. +  ...+++++||++|+|++|+|++.+++|+|+|.|
T Consensus         1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K   79 (79)
T PF04969_consen    1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK   79 (79)
T ss_dssp             SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred             CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence            689999999999999999 54578999999999999999987 2  234689999999999999999999999999998

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=99.76  E-value=4.9e-18  Score=112.29  Aligned_cols=81  Identities=35%  Similarity=0.582  Sum_probs=73.7

Q ss_pred             EEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecC---CCceecCCCCCCcccCCceEEeeCCEEEEEEEECCCCCC
Q 032235           23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQT   99 (144)
Q Consensus        23 W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g---~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~~~~~~   99 (144)
                      |+|+.++|+|+|++|... ++++.|++++++|.|.+.+   ....+++.|+++|++++|+|++.++.|+|+|.|++++.+
T Consensus         1 W~Q~~~~v~i~v~~~~~~-~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~   79 (84)
T cd06463           1 WYQTLDEVTITIPLKDVT-KKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEW   79 (84)
T ss_pred             CcccccEEEEEEEcCCCC-ccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCC
Confidence            999999999999999544 8999999999999999874   445689999999999999999999999999999988789


Q ss_pred             cCccc
Q 032235          100 WASPI  104 (144)
Q Consensus       100 W~~L~  104 (144)
                      |++|+
T Consensus        80 W~~l~   84 (84)
T cd06463          80 WPRLE   84 (84)
T ss_pred             CcccC
Confidence            99984

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=99.72  E-value=1.9e-17  Score=111.01  Aligned_cols=80  Identities=21%  Similarity=0.326  Sum_probs=72.6

Q ss_pred             EEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecC---CCceecCCCCCCcccCCceEEeeCCEEEEEEEECCCCC
Q 032235           22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQ   98 (144)
Q Consensus        22 ~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g---~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~~~~~   98 (144)
                      .|+||.++|+|+|++| ++.++++.|.+++++|.|.+.+   ....++++||++|+|++|+|++.+++|+|+|.|+.+ .
T Consensus         1 dW~Qt~~~v~i~v~~~-~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~-~   78 (84)
T cd06466           1 DWYQTDTSVTVTIYAK-NVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEP-G   78 (84)
T ss_pred             CccccCCEEEEEEEEC-CCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCC-C
Confidence            4999999999999988 8889999999999999998763   334589999999999999999999999999999987 5


Q ss_pred             CcCcc
Q 032235           99 TWASP  103 (144)
Q Consensus        99 ~W~~L  103 (144)
                      +|++|
T Consensus        79 ~W~~L   83 (84)
T cd06466          79 SWPSL   83 (84)
T ss_pred             CCccC
Confidence            89998

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.71  E-value=4.8e-17  Score=107.92  Aligned_cols=77  Identities=19%  Similarity=0.406  Sum_probs=70.5

Q ss_pred             EEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCceEEeeCCEEEEEEEECCCCCCcCc
Q 032235           23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWAS  102 (144)
Q Consensus        23 W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~~~~~~W~~  102 (144)
                      |+||.++|+|+|.+| +++++|++|++++++|.|..  .+..+.++|++.|++++|+|++.+++|+|+|.|+++ .+|++
T Consensus         1 W~Qt~~~v~i~i~~p-~v~~~~v~v~~~~~~l~i~~--~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~-~~W~~   76 (78)
T cd06469           1 WSQTDEDVKISVPLK-GVKTSKVDIFCSDLYLKVNF--PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEP-GIWEA   76 (78)
T ss_pred             CcccCCEEEEEEEeC-CCccccceEEEecCEEEEcC--CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCC-Ccccc
Confidence            999999999999999 79999999999999888765  435688999999999999999999999999999987 58999


Q ss_pred             c
Q 032235          103 P  103 (144)
Q Consensus       103 L  103 (144)
                      |
T Consensus        77 L   77 (78)
T cd06469          77 L   77 (78)
T ss_pred             c
Confidence            8

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=99.70  E-value=1.9e-16  Score=112.47  Aligned_cols=89  Identities=17%  Similarity=0.182  Sum_probs=78.4

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecC---CCceecCCCCCCcccCCceEEeeCCEEEEEEEEC
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g---~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~   94 (144)
                      .|.+.|+|+.+.|+|+|.++.   .+|++|++++++|++...|   ...+++.+||++|+|++|++++.+++|+|.|.|+
T Consensus         1 ~p~v~WaQr~~~V~ltI~v~d---~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~   77 (106)
T cd00237           1 PAKTLWYDRRDYVFIEFCVED---SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKG   77 (106)
T ss_pred             CCcceeeECCCEEEEEEEeCC---CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeC
Confidence            367899999999999999994   7899999999999998753   3345788999999999999999999999999999


Q ss_pred             CCCCCcCcccCCCCC
Q 032235           95 DKGQTWASPIMGQGQ  109 (144)
Q Consensus        95 ~~~~~W~~L~~g~~~  109 (144)
                      +++.+|++|++...+
T Consensus        78 ~~~~~WprL~k~~~k   92 (106)
T cd00237          78 KEGVAWPRLTKEKAK   92 (106)
T ss_pred             CCCCCCchhhcCCCC
Confidence            876689999987654

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=99.67  E-value=3.4e-16  Score=106.95  Aligned_cols=83  Identities=19%  Similarity=0.251  Sum_probs=72.4

Q ss_pred             cEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEec---CCCceecCCCCCCcccCCceEEeeCCEEEEEEEECCC
Q 032235           20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDK   96 (144)
Q Consensus        20 ~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~---g~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~~~   96 (144)
                      +|.|+||.+.|+|+|.+. ++.++++.|.+++++++|.+.   |....+..+||++|+|+.|+|.+.+++|+|.|.|+++
T Consensus         2 R~dW~Qs~~~V~ItI~~k-~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~   80 (87)
T cd06488           2 RHDWHQTGSHVVVSVYAK-NSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP   80 (87)
T ss_pred             CccEeeCCCEEEEEEEEC-cCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence            699999999999999875 888999999999999887653   3223477799999999999999999999999999986


Q ss_pred             CCCcCccc
Q 032235           97 GQTWASPI  104 (144)
Q Consensus        97 ~~~W~~L~  104 (144)
                      + .|++|.
T Consensus        81 ~-~W~~Le   87 (87)
T cd06488          81 G-SWAKLE   87 (87)
T ss_pred             C-cCccCC
Confidence            4 899983

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=99.67  E-value=2.7e-16  Score=106.28  Aligned_cols=81  Identities=21%  Similarity=0.351  Sum_probs=72.2

Q ss_pred             EEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecC---CCceecCCCCCCcccCCceEEeeCCEEEEEEEECCCCC
Q 032235           22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQ   98 (144)
Q Consensus        22 ~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g---~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~~~~~   98 (144)
                      .|+|+.+.|+|+|.++ ++.++++.|++++++++|.+.+   ....++++||++|+|++|+|++.+++|+|.|.|+++ .
T Consensus         1 dW~Q~~~~V~iti~~k-~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-~   78 (84)
T cd06489           1 DWYQTESQVVITILIK-NVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEA-I   78 (84)
T ss_pred             CccccCCEEEEEEEEC-CCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCC-C
Confidence            4999999999999866 8888999999999999998763   334588999999999999999999999999999975 6


Q ss_pred             CcCccc
Q 032235           99 TWASPI  104 (144)
Q Consensus        99 ~W~~L~  104 (144)
                      +|++|.
T Consensus        79 ~W~~Le   84 (84)
T cd06489          79 RWSKLE   84 (84)
T ss_pred             CCccCC
Confidence            899983

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]

Probab=99.60  E-value=1.8e-15  Score=128.94  Aligned_cols=119  Identities=20%  Similarity=0.358  Sum_probs=108.0

Q ss_pred             eecCCCCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCceEEeeC-CEEEEEE
Q 032235           13 FLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED-DVMHITL   91 (144)
Q Consensus        13 ~~~ng~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s~W~l~~-~~l~I~L   91 (144)
                      +...|.|.|+|.||.+++.+++.+|...+++++.|.+..+++-+...+. .+|+|+||..|..+.|.|.+.. ++|++.|
T Consensus       284 ~e~~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~dh-~~~~g~lyasv~he~s~~ii~ean~Le~sl  362 (596)
T KOG4379|consen  284 LENGGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHLDH-VIFDGELYASVGHELSAFIIAEANGLELSL  362 (596)
T ss_pred             hhccCCccceeeeccCcceEEEecccccccceEEEEecCceEEEEeeee-EEeccchhhhccccchhhhhhhhccceEEE
Confidence            3445578999999999999999999999999999999999999988765 7999999999999999999987 7999999


Q ss_pred             EECCCCCCcCcccCCC--CCC--ChhhHHHHHHHHHHHHHHHhCc
Q 032235           92 TKRDKGQTWASPIMGQ--GQL--DPYVTDQEQKRLMLQRFQEEVN  132 (144)
Q Consensus        92 ~K~~~~~~W~~L~~g~--~~i--d~~~~~e~~~~~~~e~~~~~~p  132 (144)
                      .|++++..|++|+.+|  ++|  |.+.++.+++||++-.|..-||
T Consensus       363 ~K~de~~twprL~~~dksGEideDveiCad~aEkLisveyeel~p  407 (596)
T KOG4379|consen  363 TKADEIQTWPRLFAQDKSGEIDEDVEICADVAEKLISVEYEELHP  407 (596)
T ss_pred             eecccccccchheeecccccchhhhHHHHHHHHHhhccchhhcCC
Confidence            9998889999999887  577  4567899999999999999888

>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]

Probab=99.44  E-value=3e-13  Score=103.49  Aligned_cols=88  Identities=23%  Similarity=0.301  Sum_probs=76.6

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEec---CCCceecCCCCCCcccCCceEEeeCCEEEEEEEEC
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~---g~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~   94 (144)
                      ..+|.|+||.++|+|+|.. +++.++||+|.|+.+.|++.++   |....+.+.||++|.|+.|++.+-+.+|+|+|.|.
T Consensus         3 k~r~DwyQt~~~vvIti~~-k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~   81 (196)
T KOG1309|consen    3 KIRHDWYQTETSVVITIFA-KNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA   81 (196)
T ss_pred             cccceeecCCceEEEEEEe-cCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence            3589999999999999965 5899999999999999988766   23344788899999999999999999999999997


Q ss_pred             CCCCCcCcccCCC
Q 032235           95 DKGQTWASPIMGQ  107 (144)
Q Consensus        95 ~~~~~W~~L~~g~  107 (144)
                      + +..|.+|.+|.
T Consensus        82 ~-~irW~~Le~g~   93 (196)
T KOG1309|consen   82 E-IIRWESLEKGK   93 (196)
T ss_pred             c-chhhhhhhccc
Confidence            5 58999999664

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.40  E-value=1.3e-12  Score=109.44  Aligned_cols=88  Identities=18%  Similarity=0.238  Sum_probs=76.7

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEec---CCCceecCCCCCCcccCCceEEeeCCEEEEEEEEC
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~---g~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~   94 (144)
                      ..+|.|+||.+.|+|+|.+. ++.++++.|+|++++|+|.+.   |....+...||++|+|+.|++++...+|+|+|.|+
T Consensus       156 ~~r~dWyQs~~~V~i~i~~k-~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~  234 (356)
T PLN03088        156 KYRHEFYQKPEEVVVTVFAK-GVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKA  234 (356)
T ss_pred             ccccceeecCCEEEEEEEec-CCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEecceEEEEEecC
Confidence            36899999999999999876 889999999999999999875   32234778999999999999999999999999999


Q ss_pred             CCCCCcCcccCCC
Q 032235           95 DKGQTWASPIMGQ  107 (144)
Q Consensus        95 ~~~~~W~~L~~g~  107 (144)
                      ++ ..|++|...+
T Consensus       235 ~~-~~W~~L~~~~  246 (356)
T PLN03088        235 EP-ITWASLEYGK  246 (356)
T ss_pred             CC-CCccccccCC
Confidence            76 6899997543

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=99.36  E-value=5.7e-12  Score=86.24  Aligned_cols=81  Identities=17%  Similarity=0.297  Sum_probs=65.7

Q ss_pred             EEEEeeCCEEEEEEECCC-CCCCCceEEEEeccEEEEEec--CCCceecCCCCCCcccCCceEEee--CCEEEEEEEECC
Q 032235           21 FEWDQTLDEINIYINLPP-NVHSKQFYCKIQSKHIELGIK--GNPPYLNHELTCPVKTDSSFWTLE--DDVMHITLTKRD   95 (144)
Q Consensus        21 Y~W~Qt~~~V~V~v~lp~-~~~~kdv~V~~~~~~l~V~v~--g~~~~l~g~L~~~I~~d~s~W~l~--~~~l~I~L~K~~   95 (144)
                      |.|+||.+.|+|+|..+. +..+.++.+.+..+++++.+.  +....++.+|+++|+++. +.++.  .++|+|.|+|++
T Consensus         1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~e   79 (87)
T cd06490           1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKKE   79 (87)
T ss_pred             CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcCC
Confidence            789999999999998764 566777888888888988764  433347778999998654 77887  569999999998


Q ss_pred             CCCCcCcc
Q 032235           96 KGQTWASP  103 (144)
Q Consensus        96 ~~~~W~~L  103 (144)
                      + ..|++|
T Consensus        80 ~-~~W~~L   86 (87)
T cd06490          80 P-EKWTSL   86 (87)
T ss_pred             C-CccccC
Confidence            6 579987

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=99.13  E-value=1.8e-10  Score=73.91  Aligned_cols=70  Identities=29%  Similarity=0.405  Sum_probs=62.1

Q ss_pred             EEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC----------CceecCCCCCCcccCCceEEeeCCEEEEEEE
Q 032235           23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN----------PPYLNHELTCPVKTDSSFWTLEDDVMHITLT   92 (144)
Q Consensus        23 W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~----------~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~   92 (144)
                      |+|+.+.+.|+|.+| +..++++.|.++++.|.|+....          .......|++.|+++.++|++.++.|.|.|.
T Consensus         1 ~~q~~~~v~i~i~~~-~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~   79 (80)
T cd00298           1 WYQTDDEVVVTVDLP-GVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP   79 (80)
T ss_pred             CEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence            899999999999999 56799999999999999987632          2347778999999999999999999999998


Q ss_pred             E
Q 032235           93 K   93 (144)
Q Consensus        93 K   93 (144)
                      |
T Consensus        80 K   80 (80)
T cd00298          80 K   80 (80)
T ss_pred             C
Confidence            6

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=3.1e-10  Score=86.46  Aligned_cols=90  Identities=13%  Similarity=0.235  Sum_probs=76.8

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC-C---ceecCCCCCCcccCCceEEeeCCEEEEEEEE
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-P---PYLNHELTCPVKTDSSFWTLEDDVMHITLTK   93 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~-~---~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K   93 (144)
                      .|...|+|+.+-|+++|-|+   .+++++|.+.+..|.++.++. .   .+.+.+||+.|+|++|+-+..++.+-..|.|
T Consensus         7 ~p~v~Waqr~~~vyltv~Ve---d~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K   83 (180)
T KOG3158|consen    7 PPEVKWAQRRDLVYLTVCVE---DAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRK   83 (180)
T ss_pred             CCcchhhhhcCeEEEEEEec---cCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEc
Confidence            46789999999999999999   688999999999999987742 1   2366899999999999999998778888888


Q ss_pred             CCCCCCcCcccCCCCCC
Q 032235           94 RDKGQTWASPIMGQGQL  110 (144)
Q Consensus        94 ~~~~~~W~~L~~g~~~i  110 (144)
                      ++.+.+||+|++...++
T Consensus        84 ~e~~~~WprLtkeK~K~  100 (180)
T KOG3158|consen   84 KELGEYWPRLTKEKAKL  100 (180)
T ss_pred             cccccccchhhhccccc
Confidence            87778999999877644

>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]

Probab=98.82  E-value=5.8e-09  Score=80.35  Aligned_cols=84  Identities=20%  Similarity=0.410  Sum_probs=73.1

Q ss_pred             CcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEec---CCCc-eecCCCCCCcccCCceEEeeCCEEEEEEEEC
Q 032235           19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPP-YLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (144)
Q Consensus        19 ~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~---g~~~-~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~   94 (144)
                      ..|.|.|+.+.|.++|.|. |+....|.|.|++.+|.+.++   |... ++-.+|..+|+++.|.-.+..+.+.|+++|.
T Consensus        75 t~ygWDQs~kfVK~yItL~-GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkV  153 (224)
T KOG3260|consen   75 TLYGWDQSNKFVKMYITLE-GVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKV  153 (224)
T ss_pred             hhcCccccCCeeEEEEEee-cccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhh
Confidence            3699999999999999987 888999999999999999876   4422 3566899999999999999999999999887


Q ss_pred             CCCCCcCccc
Q 032235           95 DKGQTWASPI  104 (144)
Q Consensus        95 ~~~~~W~~L~  104 (144)
                      +. ..|+-|.
T Consensus       154 e~-~rwd~Lt  162 (224)
T KOG3260|consen  154 EN-TRWDYLT  162 (224)
T ss_pred             hc-ccchHHH
Confidence            64 6898885

>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]

Probab=98.64  E-value=9.8e-08  Score=76.99  Aligned_cols=95  Identities=20%  Similarity=0.340  Sum_probs=73.6

Q ss_pred             cccceecCCC---CcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEec---CCCce-ecCCCCCCcccCCceEE
Q 032235            9 KRHRFLHNGQ---TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPY-LNHELTCPVKTDSSFWT   81 (144)
Q Consensus         9 ~r~~~~~ng~---~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~---g~~~~-l~g~L~~~I~~d~s~W~   81 (144)
                      ++|....+..   -+|.|.||...|+|.|+-. +.....-.|+.++..|.|.+.   |+..+ ++-+|++-|++++|+-.
T Consensus       202 GeH~w~k~~~V~~cR~Dwhqt~~~Vti~VY~k-~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~  280 (320)
T KOG1667|consen  202 GEHKWRKNEIVVKCRHDWHQTNGFVTINVYAK-GALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVV  280 (320)
T ss_pred             cchhhhccCccccchhhhhhcCCeEEEEEEec-cCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEE
Confidence            4555555543   3899999999999999854 433444578888888888654   43233 56689999999999999


Q ss_pred             eeCCEEEEEEEECCCCCCcCcccC
Q 032235           82 LEDDVMHITLTKRDKGQTWASPIM  105 (144)
Q Consensus        82 l~~~~l~I~L~K~~~~~~W~~L~~  105 (144)
                      +...+|+|+|.|+++| .|++|.-
T Consensus       281 m~~tkVEIsl~k~ep~-sWa~Le~  303 (320)
T KOG1667|consen  281 MGETKVEISLKKAEPG-SWARLEF  303 (320)
T ss_pred             eecceEEEEEeccCCC-CcccccC
Confidence            9999999999999886 6999943

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=3.8e-05  Score=56.84  Aligned_cols=79  Identities=18%  Similarity=0.289  Sum_probs=66.9

Q ss_pred             CCCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCCC--------c------e--ec--CCCCCCcccCCc
Q 032235           17 GQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP--------P------Y--LN--HELTCPVKTDSS   78 (144)
Q Consensus        17 g~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~--------~------~--l~--g~L~~~I~~d~s   78 (144)
                      +.|.|...++++++.|.+.|| |++++||+|.+.++.|.|+..-..        .      +  |.  -.|...|+++..
T Consensus        39 ~~P~vdi~e~~~~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~  117 (146)
T COG0071          39 GTPPVDIEETDDEYRITAELP-GVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI  117 (146)
T ss_pred             CCCcEEEEEcCCEEEEEEEcC-CCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence            578999999999999999999 999999999999999888765210        0      1  22  358899999988


Q ss_pred             eEEeeCCEEEEEEEECCC
Q 032235           79 FWTLEDDVMHITLTKRDK   96 (144)
Q Consensus        79 ~W~l~~~~l~I~L~K~~~   96 (144)
                      .-++..|.|.|+|.|..+
T Consensus       118 ~A~~~nGvL~I~lpk~~~  135 (146)
T COG0071         118 KAKYKNGLLTVTLPKAEP  135 (146)
T ss_pred             eeEeeCcEEEEEEecccc
Confidence            999999999999999865

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=97.92  E-value=6.1e-05  Score=51.43  Aligned_cols=73  Identities=15%  Similarity=0.255  Sum_probs=58.3

Q ss_pred             cEEEEeeCCEEEEEEECCCCCCCCceEEEEecc-EEEEEecC--------CCc--------ee--cCCCCCCcccCCceE
Q 032235           20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSK-HIELGIKG--------NPP--------YL--NHELTCPVKTDSSFW   80 (144)
Q Consensus        20 ~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~-~l~V~v~g--------~~~--------~l--~g~L~~~I~~d~s~W   80 (144)
                      ++.|.+|.+.+.|.+.|| |++++|++|.+.++ .|.|+..-        ...        -|  .-.|...|+++.-+-
T Consensus         1 ~~dv~E~~~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A   79 (92)
T cd06472           1 RVDWKETPEAHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKA   79 (92)
T ss_pred             CccEEEcCCeEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEE
Confidence            367899999999999999 89999999999865 78886531        000        12  225888999999999


Q ss_pred             EeeCCEEEEEEEE
Q 032235           81 TLEDDVMHITLTK   93 (144)
Q Consensus        81 ~l~~~~l~I~L~K   93 (144)
                      ++.+|.|.|+|.|
T Consensus        80 ~~~nGvL~I~lPK   92 (92)
T cd06472          80 FLENGVLTVTVPK   92 (92)
T ss_pred             EEECCEEEEEecC
Confidence            9999999999976

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=97.71  E-value=2.7e-05  Score=63.95  Aligned_cols=85  Identities=15%  Similarity=0.165  Sum_probs=70.4

Q ss_pred             CcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecC---C-CceecCCCCCCcccCCceEEeeCCEEEEEEEEC
Q 032235           19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---N-PPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (144)
Q Consensus        19 ~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g---~-~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~   94 (144)
                      -+|.|+||...+.|.|.-| .+...+|.+-+.++.|++.++-   . ...+...||..|.|+-++..+-+..++++|.|.
T Consensus       177 i~yd~s~Ts~t~~ifiy~~-pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV  255 (368)
T COG5091         177 IAYDFSETSDTAIIFIYRP-PVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKV  255 (368)
T ss_pred             eeeeccccceeEEEEEecC-CCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhh
Confidence            4799999999999998644 6788899999999999998762   1 123567899999999999998888899999999


Q ss_pred             CCCCCcCcccC
Q 032235           95 DKGQTWASPIM  105 (144)
Q Consensus        95 ~~~~~W~~L~~  105 (144)
                      +. ..|..|.+
T Consensus       256 ~~-v~W~~l~~  265 (368)
T COG5091         256 EM-VRWGGLNG  265 (368)
T ss_pred             hh-hhhccccc
Confidence            64 78988864

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=97.69  E-value=0.00028  Score=48.46  Aligned_cols=74  Identities=20%  Similarity=0.293  Sum_probs=56.3

Q ss_pred             EEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC------Cc--------eec--CCCCCCcccCCceEEeeCC
Q 032235           22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN------PP--------YLN--HELTCPVKTDSSFWTLEDD   85 (144)
Q Consensus        22 ~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~------~~--------~l~--g~L~~~I~~d~s~W~l~~~   85 (144)
                      .|.++.+.+.|.+.+| |+.++|++|.+.++.|.|.....      ..        -|.  -.|...++++.-+.++++|
T Consensus         1 di~e~~~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G   79 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG   79 (102)
T ss_dssp             EEEESSSEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred             CeEECCCEEEEEEECC-CCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence            4789999999999999 89999999999999998865421      11        122  3588889999999999999


Q ss_pred             EEEEEEEECCC
Q 032235           86 VMHITLTKRDK   96 (144)
Q Consensus        86 ~l~I~L~K~~~   96 (144)
                      .|.|++.|...
T Consensus        80 vL~I~~pk~~~   90 (102)
T PF00011_consen   80 VLTITIPKKEE   90 (102)
T ss_dssp             EEEEEEEBSSS
T ss_pred             EEEEEEEcccc
Confidence            99999999864

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=97.59  E-value=0.00047  Score=46.90  Aligned_cols=72  Identities=21%  Similarity=0.274  Sum_probs=57.1

Q ss_pred             cEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCCC---------ce---------ec--CCCCCCcccCCce
Q 032235           20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP---------PY---------LN--HELTCPVKTDSSF   79 (144)
Q Consensus        20 ~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~---------~~---------l~--g~L~~~I~~d~s~   79 (144)
                      +..+.++.+.+.|.+.|| |++++|++|.+.++.|.|+.....         .+         |.  -.|. .|+++..+
T Consensus         2 ~~di~e~~~~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~   79 (93)
T cd06471           2 KTDIKETDDEYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIK   79 (93)
T ss_pred             ceeEEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCE
Confidence            467899999999999999 899999999999999999653210         01         11  1354 68888889


Q ss_pred             EEeeCCEEEEEEEE
Q 032235           80 WTLEDDVMHITLTK   93 (144)
Q Consensus        80 W~l~~~~l~I~L~K   93 (144)
                      -++.+|.|.|+|.|
T Consensus        80 A~~~dGvL~I~lPK   93 (93)
T cd06471          80 AKYENGVLKITLPK   93 (93)
T ss_pred             EEEECCEEEEEEcC
Confidence            99999999999976

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=97.52  E-value=0.00054  Score=45.10  Aligned_cols=70  Identities=20%  Similarity=0.245  Sum_probs=57.2

Q ss_pred             EEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC---------------C-ce-ecCCCCCCcccCCceEEeeCC
Q 032235           23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN---------------P-PY-LNHELTCPVKTDSSFWTLEDD   85 (144)
Q Consensus        23 W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~---------------~-~~-l~g~L~~~I~~d~s~W~l~~~   85 (144)
                      +.++.+.+.|.+.|| ++.+++++|.+.++.|.|..+-.               . .+ -.-.|...|+++..+..+.+|
T Consensus         2 i~e~~~~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G   80 (88)
T cd06464           2 VYETDDAYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG   80 (88)
T ss_pred             cEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence            567889999999999 79999999999999999974411               0 11 223588999999999999999


Q ss_pred             EEEEEEEE
Q 032235           86 VMHITLTK   93 (144)
Q Consensus        86 ~l~I~L~K   93 (144)
                      .|.|++.|
T Consensus        81 ~L~I~~pk   88 (88)
T cd06464          81 VLTITLPK   88 (88)
T ss_pred             EEEEEEcC
Confidence            99999875

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=97.21  E-value=0.0017  Score=44.12  Aligned_cols=69  Identities=17%  Similarity=0.304  Sum_probs=55.9

Q ss_pred             EeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC-----Cce----ec--CCCCCCcccCCceEEe-eCCEEEEEE
Q 032235           24 DQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----LN--HELTCPVKTDSSFWTL-EDDVMHITL   91 (144)
Q Consensus        24 ~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~-----~~~----l~--g~L~~~I~~d~s~W~l-~~~~l~I~L   91 (144)
                      ..+.+.+.|.+.|| |++++||+|++.++.|.|+..-.     ..+    |.  -.|...|+++.-+-++ .+|.|.|++
T Consensus         6 ~e~~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~   84 (86)
T cd06497           6 RSDRDKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSG   84 (86)
T ss_pred             EEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEe
Confidence            45788999999999 99999999999999999875411     112    22  2588899999999999 789999998


Q ss_pred             EE
Q 032235           92 TK   93 (144)
Q Consensus        92 ~K   93 (144)
                      .|
T Consensus        85 PK   86 (86)
T cd06497          85 PK   86 (86)
T ss_pred             cC
Confidence            76

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=97.15  E-value=0.0021  Score=43.32  Aligned_cols=68  Identities=15%  Similarity=0.238  Sum_probs=54.2

Q ss_pred             eeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC-----Cce----ec--CCCCCCcccCCceEEe-eCCEEEEEEE
Q 032235           25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----LN--HELTCPVKTDSSFWTL-EDDVMHITLT   92 (144)
Q Consensus        25 Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~-----~~~----l~--g~L~~~I~~d~s~W~l-~~~~l~I~L~   92 (144)
                      .+.+.+.|.+.|| |++++||+|++.++.|.|...-.     ..+    |.  -.|...|+++.-+-++ .+|.|.|++.
T Consensus         4 ~~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P   82 (83)
T cd06478           4 LDKDRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP   82 (83)
T ss_pred             ecCceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence            5778999999999 99999999999999999866421     112    22  2577889999989999 5889999987


Q ss_pred             E
Q 032235           93 K   93 (144)
Q Consensus        93 K   93 (144)
                      |
T Consensus        83 K   83 (83)
T cd06478          83 R   83 (83)
T ss_pred             C
Confidence            6

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=97.11  E-value=0.0048  Score=41.97  Aligned_cols=70  Identities=16%  Similarity=0.290  Sum_probs=51.9

Q ss_pred             EEEEee-CCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC------Cce---------ec--CCCCCCcccCCceEEe
Q 032235           21 FEWDQT-LDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN------PPY---------LN--HELTCPVKTDSSFWTL   82 (144)
Q Consensus        21 Y~W~Qt-~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~------~~~---------l~--g~L~~~I~~d~s~W~l   82 (144)
                      +.=.++ ++...|.+.|| |++++||+|.+..+.|.|+..-.      ..+         |.  -.|...|+.+  ...+
T Consensus         3 ~di~e~~~~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~   79 (90)
T cd06470           3 YNIEKTGENNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL   79 (90)
T ss_pred             eeeEEcCCCeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE
Confidence            334455 48999999999 89999999999999999975310      000         11  2477778775  6789


Q ss_pred             eCCEEEEEEEE
Q 032235           83 EDDVMHITLTK   93 (144)
Q Consensus        83 ~~~~l~I~L~K   93 (144)
                      ++|.|.|+|.+
T Consensus        80 ~~GvL~I~l~~   90 (90)
T cd06470          80 ENGLLTIDLER   90 (90)
T ss_pred             eCCEEEEEEEC
Confidence            99999999864

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=97.09  E-value=0.0025  Score=43.14  Aligned_cols=69  Identities=13%  Similarity=0.239  Sum_probs=55.4

Q ss_pred             eeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC-----Cce----ec--CCCCCCcccCCceEEee-CCEEEEEEE
Q 032235           25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----LN--HELTCPVKTDSSFWTLE-DDVMHITLT   92 (144)
Q Consensus        25 Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~-----~~~----l~--g~L~~~I~~d~s~W~l~-~~~l~I~L~   92 (144)
                      -+.+...|.+.+| |++++||+|++.++.|.|...-+     ..+    |.  -.|...|+++.-+-++. +|.|.|+|.
T Consensus         4 ~~~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lP   82 (84)
T cd06498           4 LEKDKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGP   82 (84)
T ss_pred             eCCceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEe
Confidence            3578899999998 99999999999999999976421     112    22  25888999999999995 899999998


Q ss_pred             EC
Q 032235           93 KR   94 (144)
Q Consensus        93 K~   94 (144)
                      |.
T Consensus        83 k~   84 (84)
T cd06498          83 RK   84 (84)
T ss_pred             CC
Confidence            74

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=97.00  E-value=0.0095  Score=48.77  Aligned_cols=68  Identities=18%  Similarity=0.263  Sum_probs=57.8

Q ss_pred             eeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCceEEeeC--CEEEEEEE
Q 032235           25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED--DVMHITLT   92 (144)
Q Consensus        25 Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s~W~l~~--~~l~I~L~   92 (144)
                      ...+.+.|.|.||.-.+.+++++++.++.|.|...+..++++..|..+|+.+.+.-.+..  +.|.|+|.
T Consensus       258 ~~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp  327 (328)
T PF08190_consen  258 GSPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP  327 (328)
T ss_pred             CCCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence            347899999999965599999999999999999887445699999999999998877765  47888874

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=96.99  E-value=0.0037  Score=42.17  Aligned_cols=69  Identities=14%  Similarity=0.217  Sum_probs=54.8

Q ss_pred             EeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEec--CCC--ce--ec--CCCCCCcccCCceEEe-eCCEEEEEEEE
Q 032235           24 DQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK--GNP--PY--LN--HELTCPVKTDSSFWTL-EDDVMHITLTK   93 (144)
Q Consensus        24 ~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~--g~~--~~--l~--g~L~~~I~~d~s~W~l-~~~~l~I~L~K   93 (144)
                      ..+.+.+.|.+.|| +++++||+|++..+.|.|+..  ...  .+  |.  -.|...|+++.-+-++ .+|.|.|++.+
T Consensus         4 ~e~~~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479           4 KTLGDTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             cCcCCeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence            35788999999999 999999999999999999653  110  11  22  2588999999999998 88999998863

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=96.99  E-value=0.0049  Score=41.84  Aligned_cols=69  Identities=16%  Similarity=0.236  Sum_probs=55.2

Q ss_pred             EEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCCC-----ce----ec--CCCCCCcccCCceEEee-CCEEEE
Q 032235           22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP-----PY----LN--HELTCPVKTDSSFWTLE-DDVMHI   89 (144)
Q Consensus        22 ~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~-----~~----l~--g~L~~~I~~d~s~W~l~-~~~l~I   89 (144)
                      ....+++.+.|.+.|| |++++|++|++.++.|.|+.+-..     .+    |.  -.|...|+++.-+-.+. +|.|.|
T Consensus         4 ~i~e~~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I   82 (86)
T cd06475           4 EIRQTADRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV   82 (86)
T ss_pred             eEEEcCCeEEEEEECC-CCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence            4678999999999999 999999999999999999765211     12    22  24778899999899997 888888


Q ss_pred             EE
Q 032235           90 TL   91 (144)
Q Consensus        90 ~L   91 (144)
                      +|
T Consensus        83 ~l   84 (86)
T cd06475          83 EA   84 (86)
T ss_pred             Ee
Confidence            76

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>PRK10743 heat shock protein IbpA; Provisional

Probab=96.97  E-value=0.0093  Score=44.05  Aligned_cols=73  Identities=11%  Similarity=0.148  Sum_probs=58.4

Q ss_pred             CcEEEEe-eCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC-----Cce-----ecC------CCCCCcccCCceEE
Q 032235           19 TVFEWDQ-TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY-----LNH------ELTCPVKTDSSFWT   81 (144)
Q Consensus        19 ~~Y~W~Q-t~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~-----~~~-----l~g------~L~~~I~~d~s~W~   81 (144)
                      |.+.-.+ +.+.+.|.+.|| |++++||+|.+..+.|.|+..-.     ..+     -.|      .|...|+++.  -+
T Consensus        35 p~~di~ee~~~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~  111 (137)
T PRK10743         35 PPYNVELVDENHYRIAIAVA-GFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN  111 (137)
T ss_pred             CcEEEEEcCCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence            7788884 899999999999 99999999999999999975411     011     112      4777888883  78


Q ss_pred             eeCCEEEEEEEEC
Q 032235           82 LEDDVMHITLTKR   94 (144)
Q Consensus        82 l~~~~l~I~L~K~   94 (144)
                      +++|.|.|+|.|.
T Consensus       112 ~~dGVL~I~lPK~  124 (137)
T PRK10743        112 LVNGLLYIDLERV  124 (137)
T ss_pred             EeCCEEEEEEeCC
Confidence            8899999999996

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=96.78  E-value=0.0042  Score=41.49  Aligned_cols=65  Identities=15%  Similarity=0.256  Sum_probs=52.2

Q ss_pred             CEEEEEEECCCCCCCCceEEEEeccEEEEEecCCC----------ce-ecCCCCCCcccCCceEEeeC-CEEEEEEEE
Q 032235           28 DEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP----------PY-LNHELTCPVKTDSSFWTLED-DVMHITLTK   93 (144)
Q Consensus        28 ~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~----------~~-l~g~L~~~I~~d~s~W~l~~-~~l~I~L~K   93 (144)
                      +.+.|.+.|| |++++||+|.+.++.|.|...-+.          .+ -.-.|...|+++.-+-++.+ |.|.|++.|
T Consensus         7 ~~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526           7 EKFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             eeEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence            5899999999 899999999999999999765110          11 22358889999998999997 889998875

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=96.72  E-value=0.0096  Score=40.22  Aligned_cols=67  Identities=10%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             eCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC-----Cce----ec--CCCCCCcccCCceEEee-CCEEEEEEEE
Q 032235           26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----LN--HELTCPVKTDSSFWTLE-DDVMHITLTK   93 (144)
Q Consensus        26 t~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~-----~~~----l~--g~L~~~I~~d~s~W~l~-~~~l~I~L~K   93 (144)
                      ..+...|.+.|| |.+++||+|++.++.|.|..+-.     .-+    |.  -.|...|+++.-+-++. +|.|.|+|.|
T Consensus         5 ~~d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr   83 (83)
T cd06476           5 EDDKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR   83 (83)
T ss_pred             cCCeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence            456788999999 99999999999999999966411     112    22  24788899999999996 8899998864

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=96.71  E-value=0.012  Score=43.87  Aligned_cols=73  Identities=10%  Similarity=0.213  Sum_probs=56.9

Q ss_pred             CcEEEEe-eCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC-----Cce---------ec--CCCCCCcccCCceEE
Q 032235           19 TVFEWDQ-TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY---------LN--HELTCPVKTDSSFWT   81 (144)
Q Consensus        19 ~~Y~W~Q-t~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~-----~~~---------l~--g~L~~~I~~d~s~W~   81 (144)
                      |.+.=.+ +++.+.|.+.|| |++++||+|.+..+.|+|+...+     ..+         |.  -.|...|+++  .-+
T Consensus        33 P~vdI~e~~~~~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~  109 (142)
T PRK11597         33 PPYNIEKSDDNHYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GAT  109 (142)
T ss_pred             CcEEEEEcCCCEEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCE
Confidence            6677776 567999999999 99999999999999999976411     011         11  1366788887  578


Q ss_pred             eeCCEEEEEEEEC
Q 032235           82 LEDDVMHITLTKR   94 (144)
Q Consensus        82 l~~~~l~I~L~K~   94 (144)
                      +++|.|.|+|.|.
T Consensus       110 ~~nGVL~I~lPK~  122 (142)
T PRK11597        110 FVNGLLHIDLIRN  122 (142)
T ss_pred             EcCCEEEEEEecc
Confidence            8999999999986

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=96.00  E-value=0.029  Score=38.08  Aligned_cols=65  Identities=11%  Similarity=0.242  Sum_probs=50.2

Q ss_pred             eCCEEEEEEECCCCCCCCceEEEEeccEEEEEecC---C----Cce------ec--CCCCCCcccCCceEEe-eCCEEEE
Q 032235           26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---N----PPY------LN--HELTCPVKTDSSFWTL-EDDVMHI   89 (144)
Q Consensus        26 t~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g---~----~~~------l~--g~L~~~I~~d~s~W~l-~~~~l~I   89 (144)
                      ..+.+.|.+.|| +++++||+|++..+.|.|...-   .    ..+      |.  -.|...|+++.-.-.+ .+|.|.|
T Consensus         5 ~~d~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I   83 (87)
T cd06481           5 GKEGFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHI   83 (87)
T ss_pred             ccceEEEEEECC-CCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEE
Confidence            357889999998 9999999999999999996541   0    011      11  2477889999988999 7888888


Q ss_pred             EE
Q 032235           90 TL   91 (144)
Q Consensus        90 ~L   91 (144)
                      ++
T Consensus        84 ~~   85 (87)
T cd06481          84 RA   85 (87)
T ss_pred             Ec
Confidence            76

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=95.53  E-value=0.1  Score=35.31  Aligned_cols=65  Identities=8%  Similarity=0.123  Sum_probs=49.7

Q ss_pred             eeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC-----Cce----ec--CCCCCCcccCCceEEe-eCCEEEEE
Q 032235           25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----LN--HELTCPVKTDSSFWTL-EDDVMHIT   90 (144)
Q Consensus        25 Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~-----~~~----l~--g~L~~~I~~d~s~W~l-~~~~l~I~   90 (144)
                      .+.+...|.+.|| |.++.||+|++..+.|+|+..-.     .-+    |.  -.|...|+++.-+-++ ++|.|.|.
T Consensus         4 e~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~   80 (83)
T cd06477           4 EGKPMFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE   80 (83)
T ss_pred             cCCceEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence            3677899999999 99999999999999999976411     112    22  2478889999888887 67877765

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=94.88  E-value=0.17  Score=34.54  Aligned_cols=64  Identities=11%  Similarity=0.191  Sum_probs=48.4

Q ss_pred             eCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC------C--ce----ec--CCCCCCcccCCceEEeeCC-EEEEE
Q 032235           26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN------P--PY----LN--HELTCPVKTDSSFWTLEDD-VMHIT   90 (144)
Q Consensus        26 t~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~------~--~~----l~--g~L~~~I~~d~s~W~l~~~-~l~I~   90 (144)
                      ..+.+.|++.|| |++++||+|++..+.|+|...-+      .  .+    |.  -.|...|+.+.-+-++.++ .|.|.
T Consensus         6 ~~~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~   84 (87)
T cd06482           6 DSSNVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE   84 (87)
T ss_pred             cCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence            467899999999 99999999999999999976411      0  11    22  2477788888888888876 56653

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=94.71  E-value=0.27  Score=37.94  Aligned_cols=71  Identities=13%  Similarity=0.289  Sum_probs=50.2

Q ss_pred             EeeCC-EEEEEEECCCCCCCCc-eEEEEec--cEEEEEecCCCceecCCCCCCcccCCceEEeeCCEEEEEEEECCCC
Q 032235           24 DQTLD-EINIYINLPPNVHSKQ-FYCKIQS--KHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKG   97 (144)
Q Consensus        24 ~Qt~~-~V~V~v~lp~~~~~kd-v~V~~~~--~~l~V~v~g~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~~~~   97 (144)
                      .+.++ ++.|...|| ++.+.+ ++|.+..  ..|.+.+.+. ++=...|..+ .++-..+++..+.|+|.|.|.++.
T Consensus        97 re~dDge~~VvAdLP-GVs~dd~idV~l~~d~~~L~i~~~~~-~~krv~L~~~-~~e~~~~t~nNgILEIri~~~~~~  171 (177)
T PF05455_consen   97 RERDDGELVVVADLP-GVSDDDAIDVTLDDDEGALTIRVGEK-YLKRVALPWP-DPEITSATFNNGILEIRIRRTEES  171 (177)
T ss_pred             EecCCCcEEEEEeCC-CCCcccceeeEeecCCceEEEecCCc-eEeeEecCCC-ccceeeEEEeCceEEEEEeecCCC
Confidence            34556 799999999 776666 8888874  4555554443 4433466666 566668899989999999998753

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=89.89  E-value=2.1  Score=29.42  Aligned_cols=64  Identities=14%  Similarity=0.239  Sum_probs=45.8

Q ss_pred             CCEEEEEEECCCCCCCCceEEEEeccEEEEEec-C----CCceecC------CCCCCcccCCceEEee-CCEEEEEE
Q 032235           27 LDEINIYINLPPNVHSKQFYCKIQSKHIELGIK-G----NPPYLNH------ELTCPVKTDSSFWTLE-DDVMHITL   91 (144)
Q Consensus        27 ~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~-g----~~~~l~g------~L~~~I~~d~s~W~l~-~~~l~I~L   91 (144)
                      .+.-.|.+.+. +.+++||.|++.++.|.|..+ .    +.-++.+      .|...|+++.-+-.+. +|.|.|..
T Consensus        14 ~~~f~v~ldv~-gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea   89 (91)
T cd06480          14 SEPWKVCVNVH-SFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA   89 (91)
T ss_pred             CCcEEEEEEeC-CCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence            34455677665 899999999999999999654 1    1112222      4788889999888888 67777764

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	144
2rh0_A	157	Crystal Structure Of Nudc Domain-containing Protein		4e-16
2cr0_A	121	Solution Structure Of Nuclear Move Domain Of Nuclea		3e-07
1wfi_A	131	Nuclear Move Domain Of Nuclear Distribution Gene C		3e-07
3qor_A	121	Crystal Structure Of Human Nuclear Migration Protei		9e-07
3qor_C	121	Crystal Structure Of Human Nuclear Migration Protei		1e-06
2o30_A	131	Nuclear Movement Protein From E. Cuniculi Gb-M1 Len		3e-04

>pdb|2RH0|A Chain A, Crystal Structure Of Nudc Domain-containing Protein 2 (13542905) From Mus Musculus At 1.95 A Resolution Length = 157

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 8   EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
           E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  
Sbjct: 3   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKG 61
Query: 68  ELTCPVKTDSSFWTLEDD---VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
           +L      D   WTLED     + +T TKRD    W S +  +   DP+V DQ Q++L L
Sbjct: 62  KLFDSTIADEGTWTLEDRKXVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQXQRKLTL 121
Query: 125 QRFQEE 130
           +RFQ+E
Sbjct: 122 ERFQKE 127

>pdb|2CR0|A Chain A, Solution Structure Of Nuclear Move Domain Of Nuclear Distribution Gene C Length = 121

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 14  LHNGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
           L NG  +  + W QTL E+++ +   +   +  K     IQ +H+ +G+KG PP ++ EL
Sbjct: 11  LGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGEL 70
Query: 70  TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTW 100
              VK + S W +ED  V+ + L K +K + W
Sbjct: 71  YNEVKVEESSWLIEDGKVVTVHLEKINKMEWW 102

>pdb|1WFI|A Chain A, Nuclear Move Domain Of Nuclear Distribution Gene C Homolog Length = 131

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 21  FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS 78
           + W QTL E+++ +   +   +  K     IQ +H+ +G+KG PP ++ EL   VK + S
Sbjct: 10  YRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEES 69
Query: 79  FWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
            W +ED  V+ + L K +K + W   +    +++    + E  +L
Sbjct: 70  SWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKL 114

>pdb|3QOR|A Chain A, Crystal Structure Of Human Nuclear Migration Protein Nudc Length = 121

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 2   AEKLAPEKRHRFLHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELG 57
           + KL P      L NG  +  + W QTL E+++ +    N  +  K     IQ +H+ +G
Sbjct: 3   SSKLKPN-----LGNGADLPNYRWTQTLSELDLAVPFXVNFRLKGKDMVVDIQRRHLRVG 57
Query: 58  IKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWA 101
           +KG P  ++ EL   VK + S W + D  V+ + L K +K + W+
Sbjct: 58  LKGQPAIIDGELYNEVKVEESSWLIADGAVVTVHLEKINKMEWWS 102

>pdb|3QOR|C Chain C, Crystal Structure Of Human Nuclear Migration Protein Nudc Length = 121

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 2   AEKLAPEKRHRFLHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELG 57
           + KL P      L NG  +  + W QTL E+++ +    N  +  K     IQ +H+ +G
Sbjct: 3   SSKLKPN-----LGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVG 57
Query: 58  IKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWA 101
           +KG P  ++ EL   VK + S W + D  V+ + L K +K + W+
Sbjct: 58  LKGQPAIIDGELYNEVKVEESSWLIADGAVVTVHLEKINKMEWWS 102

>pdb|2O30|A Chain A, Nuclear Movement Protein From E. Cuniculi Gb-M1 Length = 131

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
           + WDQ L+EINI   +  +  S     +   K I +  +G    ++ EL   V   S +W
Sbjct: 7   YTWDQELNEINIQFPVTGDADSSAIKIRXVGKKICVKNQG-EIVIDGELLHEVDVSSLWW 65
Query: 81  TLEDDVMHITLTKRDKGQTWASPIMGQGQLD 111
            +  DV+ + +TK+ + + W S ++G   +D
Sbjct: 66  VINGDVVDVNVTKK-RNEWWDSLLVGSESVD 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	2e-40
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	2e-31
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	3e-27
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	8e-25
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	1e-21
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	6e-15
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	8e-06
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	2e-04

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Length = 157

 Score =  132 bits (332), Expect = 2e-40
 Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 4/126 (3%)

Query: 8   EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
           E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  
Sbjct: 3   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGG-REILKG 61

Query: 68  ELTCPVKTDSSFWTLEDD---VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
           +L      D   WTLED     + +T TKRD    W S +  +   DP+V DQ Q++L L
Sbjct: 62  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 121

Query: 125 QRFQEE 130
           +RFQ+E
Sbjct: 122 ERFQKE 127

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Length = 131

 Score =  108 bits (271), Expect = 2e-31
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 5/112 (4%)

Query: 16  NGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTC 71
           +G +   + W QTL E+++ +   +   +  K     IQ +H+ +G+KG PP ++ EL  
Sbjct: 3   SGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYN 62

Query: 72  PVKTDSSFWTLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
            VK + S W +ED  V+ + L K +K + W   +    +++    + E  +L
Sbjct: 63  EVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKL 114

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Length = 121

 Score = 97.3 bits (242), Expect = 3e-27
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 10/123 (8%)

Query: 1   MAEKLAPEKRHRFLHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIEL 56
            + KL P        NG  +  + W QTL E+++ +    N  +  K     IQ +H+ +
Sbjct: 2   SSSKLKPNL-----GNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRV 56

Query: 57  GIKGNPPYLNHELTCPVKTDSSFWTLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVT 115
           G+KG P  ++ EL   VK + S W + D  V+ + L K +K + W+  +    +++    
Sbjct: 57  GLKGQPAIIDGELYNEVKVEESSWLIADGAVVTVHLEKINKMEWWSRLVSSDPEINTKKI 116

Query: 116 DQE 118
           + E
Sbjct: 117 NPE 119

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131

 Score = 91.1 bits (226), Expect = 8e-25
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
           + WDQ L+EINI   +  +  S     ++  K I +  +G    ++ EL   V   S +W
Sbjct: 7   YTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQG-EIVIDGELLHEVDVSSLWW 65

Query: 81  TLEDDVMHITLTKRDKGQTWASPIMGQGQLD 111
            +  DV+ + +TK+ + + W S ++G   +D
Sbjct: 66  VINGDVVDVNVTKK-RNEWWDSLLVGSESVD 95

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Length = 124

 Score = 83.1 bits (205), Expect = 1e-21
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 15  HNGQTV--FEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGIK---GNPPYLNHE 68
           +NG     + W Q   ++ + + +P +V   KQ    + S  I + +    G    +  +
Sbjct: 14  YNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGK 73

Query: 69  LTCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLD 111
           LT  + T+SS W+LE    + + L+K  +   W + + G+  +D
Sbjct: 74  LTHKINTESSLWSLEPGKCVLVNLSKVGE-YWWNAILEGEEPID 116

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 65.9 bits (160), Expect = 6e-15
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 21  FEWDQTLDEINIYINLP--PNVHSKQFYCKIQSKHIELGIKG----NPPYLNHELTCPVK 74
           + WDQ+   + IYI L     V ++        +  +L +K     +   + + L  P+ 
Sbjct: 23  YGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPIS 82

Query: 75  TDSSFWTLEDDVMHITLTKRDKGQTWAS 102
            + S   ++ D + I   K+ +   W  
Sbjct: 83  VEGSSKKVKTDTVLILCRKKVENTRWDY 110

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 114

 Score = 41.4 bits (97), Expect = 8e-06
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDS 77
           ++W QT  ++ I + +  NV       +   K +   +K   G    L  EL  P+  + 
Sbjct: 12  YDWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ 70

Query: 78  SFWTLEDDVMHITLTKRDKGQTWAS 102
           S + +    + I L K +  + W  
Sbjct: 71  STFKVLSTKIEIKLKKPEAVR-WEK 94

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Length = 92

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDS 77
            E+ Q  +E+ + +     +  +        + + + I+    +  YL   L   +  D 
Sbjct: 5   HEYYQKPEEVVVTVFAK-GIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDK 63

Query: 78  SFWTLEDDVMHITLTKRDKGQTWAS 102
             + +    + I L K D    WAS
Sbjct: 64  CKYEVLSTKIEICLAKADIIT-WAS 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	100.0
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	99.96
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	99.95
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	99.94
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	99.94
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	99.89
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	99.86
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	99.83
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	99.83
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	99.79
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	99.74
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	99.7
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	98.6
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	98.47
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	98.35
4fei_A	102	Heat shock protein-related protein; stress respons	98.35
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	98.27
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	98.13
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	97.92
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	97.82
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	97.76
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	97.68
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	97.56
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	97.17
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	96.8
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	95.0

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=100.00  E-value=2.2e-36  Score=226.71  Aligned_cols=127  Identities=34%  Similarity=0.573  Sum_probs=121.7

Q ss_pred             CcccccceecCCCCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCceEEeeCC
Q 032235            6 APEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD   85 (144)
Q Consensus         6 ~~~~r~~~~~ng~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s~W~l~~~   85 (144)
                      ++++|+.+..+..++|.|+||.++|+|+|+||++++++||.|+|++++|+|+++|+ ++++|+||++|++++|+|+++++
T Consensus         1 ~~~~r~~~~~~~~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~kg~-~~l~g~L~~~I~~eeS~w~i~~~   79 (157)
T 2rh0_A            1 GFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGR-EILKGKLFDSTIADEGTWTLEDR   79 (157)
T ss_dssp             -CGGGTTCCCEECSSEEEEECSSEEEEEEECCTTCCGGGEEEEECSSEEEEEETTE-EEEEEEBSSCBCGGGCEEEEECC
T ss_pred             ChhhccCcccCCCCcEEEEecCCEEEEEEECCCCCcccceEEEEecCEEEEEECCE-EEEeeccccccCccccEEEEcCC
Confidence            57899999999999999999999999999999999999999999999999999987 79999999999999999999998


Q ss_pred             E-EEEEEEECCC--CCCcCcccCCCCCCChhhHHHHHHHHHHHHHHHhCcc
Q 032235           86 V-MHITLTKRDK--GQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEEVNY  133 (144)
Q Consensus        86 ~-l~I~L~K~~~--~~~W~~L~~g~~~id~~~~~e~~~~~~~e~~~~~~p~  133 (144)
                      + |+|+|.|++.  +.||++|++|++++|+++.|++++|+||+||+.+||+
T Consensus        80 k~v~I~L~K~~~~~~~~W~~L~k~~~~lD~~t~d~~~k~~~L~~f~~~~p~  130 (157)
T 2rh0_A           80 KMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPG  130 (157)
T ss_dssp             CEEEEEEEBSSCSTTCCCSEEETTEEECCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             cEEEEEEEEcCCCcCCcChhhhcCCCCCChHHHHHHHHHHHHHHHHHHCCC
Confidence            6 9999999987  7899999999999999999999999999999999997

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=99.96  E-value=3.8e-29  Score=179.83  Aligned_cols=101  Identities=29%  Similarity=0.569  Sum_probs=93.9

Q ss_pred             ecCC--CCcEEEEeeCCEEEEEEECCCC--CCCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCceEEeeCC-EEE
Q 032235           14 LHNG--QTVFEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMH   88 (144)
Q Consensus        14 ~~ng--~~~Y~W~Qt~~~V~V~v~lp~~--~~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s~W~l~~~-~l~   88 (144)
                      .+||  .++|.|+||.++|+|+|+||++  ++++|++|+|++++|+|.++|.+++++|+||++|++++|+|+++++ .|+
T Consensus        10 ~~nG~~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~~~g~L~~~I~~deS~w~i~~~~~i~   89 (121)
T 3qor_A           10 LGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIADGAVVT   89 (121)
T ss_dssp             TTSSCBCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETTSCCSEEEEBSSCBCGGGCEEEEETTTEEE
T ss_pred             CCCCCcCCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcCcceEEeccccccccccccEEEEcCCCEEE
Confidence            3566  4689999999999999999998  8999999999999999999998778999999999999999999997 899


Q ss_pred             EEEEECCCCCCcCcccCCCCCCChhh
Q 032235           89 ITLTKRDKGQTWASPIMGQGQLDPYV  114 (144)
Q Consensus        89 I~L~K~~~~~~W~~L~~g~~~id~~~  114 (144)
                      |+|.|++.|.||++|++|+++||+..
T Consensus        90 i~L~K~~~~~~W~~L~~~~~~id~~k  115 (121)
T 3qor_A           90 VHLEKINKMEWWSRLVSSDPEINTKK  115 (121)
T ss_dssp             EEEEBSSSSCCCSCSBTTSCCBCGGG
T ss_pred             EEEEECCCCCCChhhhcCCCCCccce
Confidence            99999988889999999999999764

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=99.95  E-value=1.4e-27  Score=173.31  Aligned_cols=99  Identities=28%  Similarity=0.588  Sum_probs=92.3

Q ss_pred             cCC--CCcEEEEeeCCEEEEEEECCCC--CCCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCceEEeeCC-EEEE
Q 032235           15 HNG--QTVFEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHI   89 (144)
Q Consensus        15 ~ng--~~~Y~W~Qt~~~V~V~v~lp~~--~~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s~W~l~~~-~l~I   89 (144)
                      +||  .++|.|+||.++|+|+|+||++  ++++|++|+|++++|+|+++|.+++++|+||++|++++|+|+++++ .|+|
T Consensus         2 ~ng~~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~~~~~L~~~I~~e~s~w~i~~~k~v~i   81 (131)
T 1wfi_A            2 SSGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTV   81 (131)
T ss_dssp             CCSSSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTTCEEEEETTTEEEE
T ss_pred             CCCCCCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEECCceEEEecccccccccccCEEEEcCCCEEEE
Confidence            577  4689999999999999999998  9999999999999999999988778999999999999999999997 6999


Q ss_pred             EEEECCCCCCcCcccCCCCCCChh
Q 032235           90 TLTKRDKGQTWASPIMGQGQLDPY  113 (144)
Q Consensus        90 ~L~K~~~~~~W~~L~~g~~~id~~  113 (144)
                      +|.|++++.||++|++++++||+.
T Consensus        82 ~L~K~~~~~~W~~L~~~~~~id~~  105 (131)
T 1wfi_A           82 HLEKINKMEWWNRLVTSDPEINTK  105 (131)
T ss_dssp             EEEBSSSCCCCSCSBSSCCSCCCS
T ss_pred             EEEECCCCCCChhhhcCCCCCCcc
Confidence            999998878999999999988764

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=99.94  E-value=3.3e-27  Score=171.59  Aligned_cols=99  Identities=25%  Similarity=0.500  Sum_probs=79.1

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCceEEeeCCEEEEEEEECCCC
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKG   97 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~~~~   97 (144)
                      +++|.|+||.++|+|+|+||++++++|+.|+|++++|+|+++|.+ +++|+||++|++++|+|++++++|+|+|.|+ .+
T Consensus         4 ~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~g~~-~~~~~L~~~I~~e~S~w~i~~~kv~i~L~K~-~~   81 (131)
T 2o30_A            4 EAKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQGEI-VIDGELLHEVDVSSLWWVINGDVVDVNVTKK-RN   81 (131)
T ss_dssp             -CCCEEEEETTEEEEEEECC---CCSCEEEEEETTEEEEEETTEE-EEEEEBSSCEEEEEEEEEEETTEEEEEEEES-SC
T ss_pred             CCcEEEEecCCEEEEEEECCCCCCccceEEEEECCEEEEEECCEe-eEccccccccccccCEEEEeCCEEEEEEEEC-CC
Confidence            578999999999999999999999999999999999999999875 9999999999999999999999999999999 56


Q ss_pred             CCcCcccCCCCCCChhhHHHH
Q 032235           98 QTWASPIMGQGQLDPYVTDQE  118 (144)
Q Consensus        98 ~~W~~L~~g~~~id~~~~~e~  118 (144)
                      .||++|++|+++||+...+..
T Consensus        82 ~~W~~L~~~~~~id~~k~~~e  102 (131)
T 2o30_A           82 EWWDSLLVGSESVDVQKLAEN  102 (131)
T ss_dssp             CCCSCSBC-------------
T ss_pred             CCCccccCCCCCCCHhHcCcc
Confidence            899999999999998766555

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=99.94  E-value=2e-26  Score=166.01  Aligned_cols=105  Identities=23%  Similarity=0.456  Sum_probs=93.6

Q ss_pred             cccceecCCC--CcEEEEeeCCEEEEEEECCCCC-CCCceEEEEeccEEEEEec---CCCceecCCCCCCcccCCceEEe
Q 032235            9 KRHRFLHNGQ--TVFEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTL   82 (144)
Q Consensus         9 ~r~~~~~ng~--~~Y~W~Qt~~~V~V~v~lp~~~-~~kdv~V~~~~~~l~V~v~---g~~~~l~g~L~~~I~~d~s~W~l   82 (144)
                      .++.-.+||.  ++|.|+||.++|+|+|+||+++ +++|++|+|++++|+|+++   |.+++++++||++|++++|+|++
T Consensus         8 ~~~~~~~nG~~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~~~L~~~I~~e~S~w~i   87 (124)
T 1wgv_A            8 QKNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSL   87 (124)
T ss_dssp             CSCSSSSSSBCCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEE
T ss_pred             ccCCCccCCCcCCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccCCCceEEcccccCcCCCcCCEEEE
Confidence            3445578885  5999999999999999999998 9999999999999999985   44468999999999999999999


Q ss_pred             eCCE-EEEEEEECCCCCCcCcccCCCCCCChhh
Q 032235           83 EDDV-MHITLTKRDKGQTWASPIMGQGQLDPYV  114 (144)
Q Consensus        83 ~~~~-l~I~L~K~~~~~~W~~L~~g~~~id~~~  114 (144)
                      ++++ |+|+|.|++. .||++|++++++||+..
T Consensus        88 ~~~k~v~i~L~K~~~-~~W~~L~~~~~~id~~k  119 (124)
T 1wgv_A           88 EPGKCVLVNLSKVGE-YWWNAILEGEEPIDIDS  119 (124)
T ss_dssp             CTTSEEEEEECBSSS-CCCSCSBTTSCCCSCCC
T ss_pred             eCCCEEEEEEEECCC-CCCcCcccCCCccChhh
Confidence            9986 9999999965 79999999999998753

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.89  E-value=4.8e-23  Score=145.48  Aligned_cols=99  Identities=19%  Similarity=0.279  Sum_probs=81.9

Q ss_pred             CCCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEec---CCCceecCCCCCCcccCCceEEeeCCEEEEEEEE
Q 032235           17 GQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTK   93 (144)
Q Consensus        17 g~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~---g~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K   93 (144)
                      +.++|.|+||.++|+|+|++| +++++|+.|+|++++|+|.+.   |...+++++||++|++++|+|++.+++|+|+|.|
T Consensus         8 ~~~~~~W~Qt~~~V~v~i~l~-~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~e~s~~~~~~~~l~i~L~K   86 (114)
T 1rl1_A            8 SKIKYDWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKK   86 (114)
T ss_dssp             CCCCEEEEECSSEEEEEECCC-SCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEEC
T ss_pred             CCCCccEEeCCCEEEEEEEeC-CCCHHHCEEEEEcCEEEEEEEeCCCcEEEEEeeCCCcCCccccEEEEECCEEEEEEEc
Confidence            567899999999999999999 888999999999999999886   3334699999999999999999999999999999


Q ss_pred             CCCCCCcCcccCCCCCCChhhHHH
Q 032235           94 RDKGQTWASPIMGQGQLDPYVTDQ  117 (144)
Q Consensus        94 ~~~~~~W~~L~~g~~~id~~~~~e  117 (144)
                      ++++ ||++|.+++++||+...+-
T Consensus        87 ~~~~-~W~~L~~~~~~~~~~~i~~  109 (114)
T 1rl1_A           87 PEAV-RWEKLEGQGDVPTPKQFVA  109 (114)
T ss_dssp             SSCC-CCSSSBTTC----------
T ss_pred             CCCC-cCccccccCCccCCcccCC
Confidence            9875 9999999999999865443

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=99.86  E-value=2.7e-21  Score=131.17  Aligned_cols=86  Identities=19%  Similarity=0.222  Sum_probs=78.5

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecC---CCceecCCCCCCcccCCceEEeeCCEEEEEEEEC
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g---~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~   94 (144)
                      .++|.|+||.++|+|+|++| ++.++|+.|+|++++|+|.+.+   ....++++||++|+|++|+|++.+++|+|+|.|+
T Consensus         2 ~~~~~W~Qt~~~V~v~i~~~-~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~   80 (92)
T 2xcm_C            2 KYRHEYYQKPEEVVVTVFAK-GIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAKA   80 (92)
T ss_dssp             CSEEEEEEETTEEEEEEECC-SCCGGGEEEEECSSBEEEEECCTTSCCEEECCBBSSCBCGGGCEEEECSSCEEEEEEBS
T ss_pred             CccccEEeCCCEEEEEEEEC-CCChHHeEEEEECCEEEEEEEcCCCcEEEEeeEcCCccCchhEEEEEECCEEEEEEEcC
Confidence            47899999999999999987 7889999999999999999874   3346999999999999999999999999999999


Q ss_pred             CCCCCcCcccC
Q 032235           95 DKGQTWASPIM  105 (144)
Q Consensus        95 ~~~~~W~~L~~  105 (144)
                      +++ +|++|.+
T Consensus        81 ~~~-~W~~L~~   90 (92)
T 2xcm_C           81 DII-TWASLEH   90 (92)
T ss_dssp             SSC-CCSCSBT
T ss_pred             CCC-cchhccc
Confidence            876 9999975

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=3.6e-20  Score=133.64  Aligned_cols=91  Identities=19%  Similarity=0.300  Sum_probs=79.9

Q ss_pred             CCCCcEEEEeeCCEEEEEEECCCCC---CCCceEEEEeccEEEEEecC---CCceecC-CCCCCcccCCceEEeeCCEEE
Q 032235           16 NGQTVFEWDQTLDEINIYINLPPNV---HSKQFYCKIQSKHIELGIKG---NPPYLNH-ELTCPVKTDSSFWTLEDDVMH   88 (144)
Q Consensus        16 ng~~~Y~W~Qt~~~V~V~v~lp~~~---~~kdv~V~~~~~~l~V~v~g---~~~~l~g-~L~~~I~~d~s~W~l~~~~l~   88 (144)
                      ...++|.|+||.++|+|+|+++ ++   .++++.|+|++++|.|.+.+   ....++. +||++|++++|+|++.+++|+
T Consensus        18 ~~~~~y~W~Qt~~~V~i~I~l~-~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVe   96 (127)
T 1x5m_A           18 VKISNYGWDQSDKFVKIYITLT-GVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVL   96 (127)
T ss_dssp             EECCSCEEEEETTEEEEEEECT-TTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTEEE
T ss_pred             cCccEEEEEcCCCEEEEEEEeC-CCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCEEE
Confidence            3456999999999999999999 55   78999999999999999874   2345887 599999999999999999999


Q ss_pred             EEEEECCCCCCcCcccCCC
Q 032235           89 ITLTKRDKGQTWASPIMGQ  107 (144)
Q Consensus        89 I~L~K~~~~~~W~~L~~g~  107 (144)
                      |+|.|++++.||++|..++
T Consensus        97 i~L~K~~~~~~W~~L~~~~  115 (127)
T 1x5m_A           97 ILCRKKVENTRWDYLTQVE  115 (127)
T ss_dssp             EEEECSSSSCCCSSSBHHH
T ss_pred             EEEEECCCCCCCCcccccc
Confidence            9999998767999998654

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=99.83  E-value=1.4e-20  Score=135.51  Aligned_cols=88  Identities=17%  Similarity=0.232  Sum_probs=79.4

Q ss_pred             cEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecC----CCceecCCCCCCcccCCceEEeeCCEEEEEEEECC
Q 032235           20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG----NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRD   95 (144)
Q Consensus        20 ~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g----~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~~   95 (144)
                      +|.|+||.+.|+|+|++|.   .+++.|+|++++|+|++.+    ....++++||++|+|++|+|++.+++|+|+|.|++
T Consensus         5 ~~~W~Qt~~~V~ltI~~~~---~~~~~V~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~~e~S~~~v~~~kiei~L~K~~   81 (125)
T 1ejf_A            5 SAKWYDRRDYVFIEFCVED---SKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGE   81 (125)
T ss_dssp             CEEEEECSSEEEEEECCTT---EEEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEESS
T ss_pred             ceeEEeCCCEEEEEEEecC---CCceEEEEECCEEEEEEEeCCCCceEEEEEEccceeccccCEEEECCCEEEEEEEECC
Confidence            8999999999999999995   5899999999999998753    33469999999999999999999999999999998


Q ss_pred             CCCCcCcccCCCCCC
Q 032235           96 KGQTWASPIMGQGQL  110 (144)
Q Consensus        96 ~~~~W~~L~~g~~~i  110 (144)
                      ++.+|++|+++++++
T Consensus        82 ~~~~W~rL~~~~~K~   96 (125)
T 1ejf_A           82 SGQSWPRLTKERAKL   96 (125)
T ss_dssp             TTCCCSSSBSSCCCC
T ss_pred             CCCCCCceecCCCcc
Confidence            777999999998764

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.79  E-value=1.5e-18  Score=126.82  Aligned_cols=102  Identities=9%  Similarity=0.114  Sum_probs=87.3

Q ss_pred             CCCcccccceecCCCCcEEEEee-CCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC---------------CceecC
Q 032235            4 KLAPEKRHRFLHNGQTVFEWDQT-LDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN---------------PPYLNH   67 (144)
Q Consensus         4 ~~~~~~r~~~~~ng~~~Y~W~Qt-~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~---------------~~~l~g   67 (144)
                      +-.|++-........++|.|+|| .++|+|+|+++ ++.+++++|+|++++|+|.+.+.               ...+++
T Consensus         5 ~~~~~~~~~~~~~~~~r~~W~Qt~~~~V~vtI~~k-~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~   83 (134)
T 1wh0_A            5 SSGVDEPESMVNLAFVKNDSYEKGPDSVVVHVYVK-EICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQV   83 (134)
T ss_dssp             SCSSCCGGGSEEESCCCEEEEEETTTEEEEEEECC-SBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEE
T ss_pred             cCCCcCCcccccccCCCeEEEcCCCCEEEEEEEeC-CCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEec
Confidence            34566666666677889999999 99999999997 78899999999999999998632               234778


Q ss_pred             CCCCCcccCCceEEeeCCEEEEEEEECCCCCCcCcccCCC
Q 032235           68 ELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQ  107 (144)
Q Consensus        68 ~L~~~I~~d~s~W~l~~~~l~I~L~K~~~~~~W~~L~~g~  107 (144)
                      +||++|+|++|+|++.+++|+|+|+|++. .+|++|....
T Consensus        84 ~L~~~I~pe~S~~~v~~~kIeI~L~K~e~-~~W~~L~~~~  122 (134)
T 1wh0_A           84 KLRNLIEPEQCTFCFTASRIDICLRKRQS-QRWGGLEAPA  122 (134)
T ss_dssp             EBSSCEEEEEEEEEECSSEEEEEEEESSS-CCCSCSBCCC
T ss_pred             cccccCCchhCEEEEeCCEEEEEEEECCC-CccccccccC
Confidence            89999999999999999999999999975 6999998654

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.2e-18  Score=127.08  Aligned_cols=90  Identities=14%  Similarity=0.228  Sum_probs=73.8

Q ss_pred             CCcEEEEeeCCE-------EEEEEECCCCCCCCceEEEEeccEEEEEecCC---------CceecCCCCCCcccCCceEE
Q 032235           18 QTVFEWDQTLDE-------INIYINLPPNVHSKQFYCKIQSKHIELGIKGN---------PPYLNHELTCPVKTDSSFWT   81 (144)
Q Consensus        18 ~~~Y~W~Qt~~~-------V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~---------~~~l~g~L~~~I~~d~s~W~   81 (144)
                      .|.|.|+||.++       |+|+|.+|.   .+++.|+|++++|+|.+.+.         .+.++++||++|+|++|+|+
T Consensus         6 ~p~~~W~Q~~~~~~~~k~~V~ltI~~~~---~~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~~   82 (134)
T 2cg9_X            6 NPQVAWAQRSSTTDPERNYVLITVSIAD---CDAPELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHK   82 (134)
T ss_dssp             -----CBCCCEEECCCSSEEEEECCCSS---EESCCCCBCSSEEEECCEEC-------CEEBCEEEECSSCCCSSSEEEE
T ss_pred             CCCEEEEeCCCCcCCcCCEEEEEEEecC---CCceEEEEECCEEEEEEecccccCCccCceEEEEEEChhhccccccEEE
Confidence            478999999988       999999984   46899999999999986642         24589999999999999999


Q ss_pred             eeCCE-EEEEEEECCC-CCCcCcccCCCCCC
Q 032235           82 LEDDV-MHITLTKRDK-GQTWASPIMGQGQL  110 (144)
Q Consensus        82 l~~~~-l~I~L~K~~~-~~~W~~L~~g~~~i  110 (144)
                      +.+++ |+|+|.|+++ +.||++|+++++++
T Consensus        83 v~~~~~vei~L~K~~~~~~~W~rL~k~~~K~  113 (134)
T 2cg9_X           83 VANGQHYFLKLYKKDLESEYWPRLTKEKVKY  113 (134)
T ss_dssp             ECCC--CEEEEEECSSSSCCCSCSSSSCCCC
T ss_pred             ECCCEEEEEEEEECCCCCCCCCceecCCCcc
Confidence            99998 9999999984 67999999988764

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.70  E-value=3.3e-17  Score=121.64  Aligned_cols=87  Identities=15%  Similarity=0.247  Sum_probs=76.4

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEe-ccEEEEEecC---CCceecCCCCCCcccCCceEEeeCCEEEEEEEE
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQ-SKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTK   93 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~-~~~l~V~v~g---~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K   93 (144)
                      +|+|.|+||.+.|+|+|.++.   .++++|+|+ +++|.|.+.|   ....++.+||++|+|+ |+|++.+++|+|+|.|
T Consensus         4 ~P~~~W~Qt~~~V~ltI~l~~---~~~v~V~~~~~~~l~~~~~~~~~~~y~~~l~L~~~Idpe-S~~~v~~~kIei~L~K   79 (150)
T 2kmw_A            4 NPEVLWAQRSDKVYLTVALPD---AKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTE-YRKNVGLRNIIFSIQK   79 (150)
T ss_dssp             CCCEEEEECSSEEEEEECCSS---EEEEEECCCTTEEEEEEEETTTTEEEEEEEEBSSCEEEE-EEEEEESSSEEEEEEE
T ss_pred             CCcEEEEeCCCEEEEEEEeCC---CCceEEEEecCCEEEEEEEcCCCceEEEEeEhhhccccc-ceEEecCCEEEEEEEE
Confidence            478999999999999999984   468999999 7999998763   2245888999999999 9999999999999999


Q ss_pred             CCCCCCcCcccCCCCC
Q 032235           94 RDKGQTWASPIMGQGQ  109 (144)
Q Consensus        94 ~~~~~~W~~L~~g~~~  109 (144)
                      +++ .+|++|.+++++
T Consensus        80 ~e~-~~W~rL~k~~~K   94 (150)
T 2kmw_A           80 EER-SWWTRLLKSEEK   94 (150)
T ss_dssp             CCS-SCCSCSBSCCSS
T ss_pred             CCC-CcCcccccCCcc
Confidence            976 599999988765

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=98.60  E-value=2.4e-07  Score=67.28  Aligned_cols=83  Identities=18%  Similarity=0.279  Sum_probs=70.8

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCC--CCceEEEEeccEEEEEecCCCceecCCCCCCc-ccCCc--eEEeeCCEEEEEEE
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVH--SKQFYCKIQSKHIELGIKGNPPYLNHELTCPV-KTDSS--FWTLEDDVMHITLT   92 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~--~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I-~~d~s--~W~l~~~~l~I~L~   92 (144)
                      +|+|.=+|+++.|.|.|.+| .++  .+++.+.+.++-+.+...  ++++...|.++| +.+.|  +|-.+.+.+.|+|.
T Consensus         3 TP~F~itQd~e~viV~Ik~P-~~~~~~sdiei~v~~~~F~F~~~--PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLp   79 (134)
T 2k8q_A            3 TPRFSITQDEEFIFLKIFIS-NIRFSAVGLEIIIQENMIIFHLS--PYYLRLRFPHELIDDERSTAQYDSKDECINVKVA   79 (134)
T ss_dssp             CSEEEEEECSSEEEEEEECC-SSCCCSSSCCCEECSSSEEECSS--SSCEEECCSSCEECCSSCEEEEETTTTEEEEEEE
T ss_pred             CceEEEEECCCEEEEEEEcC-ccccCccccEEEEeCCEEEEecC--CeEEEecCCCeeecCCCcceeEeccCCEEEEEEe
Confidence            58899999999999999999 666  889999999998888764  467889999999 66554  46666679999999


Q ss_pred             ECCCCCCcCcc
Q 032235           93 KRDKGQTWASP  103 (144)
Q Consensus        93 K~~~~~~W~~L  103 (144)
                      |.++|+.++.|
T Consensus        80 K~~~Ge~F~dL   90 (134)
T 2k8q_A           80 KLNKNEYFEDL   90 (134)
T ss_dssp             ESSTTCCCSST
T ss_pred             CCCCCCCCCCc
Confidence            99999888877

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=98.47  E-value=2.4e-06  Score=60.43  Aligned_cols=84  Identities=17%  Similarity=0.221  Sum_probs=70.4

Q ss_pred             CCcEEEEeeCCEEEEEEECCCC-CCCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCc---eEEeeCCEEEEEEEE
Q 032235           18 QTVFEWDQTLDEINIYINLPPN-VHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS---FWTLEDDVMHITLTK   93 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~-~~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s---~W~l~~~~l~I~L~K   93 (144)
                      +|+|+=+|+++.|.|.|.+|.. ++++++.+.+.++-+.+.++  +.|+...|.++|.-++.   +|-.+++.+.|+|.|
T Consensus        17 TP~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~~--PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~lpK   94 (115)
T 3eud_A           17 TPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS--PYYLRLRFPHELIDDERSTAQYDSKDECINVKVAK   94 (115)
T ss_dssp             CCCEEEEECSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEET--TEEEEEECSSCEECSTTCEEEEETTTTEEEEEEEE
T ss_pred             CCcEEEEECCCEEEEEEEcCceecccCccEEEEeCCEEEEecC--CeEEEEecCcceecCCCcceEEeCCCcEEEEEEcC
Confidence            6899999999999999999942 24789999999999998875  56788899999954443   677777899999999


Q ss_pred             CCCCCCcCcc
Q 032235           94 RDKGQTWASP  103 (144)
Q Consensus        94 ~~~~~~W~~L  103 (144)
                      .++|+..+.|
T Consensus        95 ~~~GE~F~dL  104 (115)
T 3eud_A           95 LNKNEYFEDL  104 (115)
T ss_dssp             SSTTCCCCCT
T ss_pred             CcCCCcCCCc
Confidence            9999877766

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=98.35  E-value=4.9e-06  Score=56.47  Aligned_cols=77  Identities=13%  Similarity=0.270  Sum_probs=64.3

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCCC-------ce---------ec--CCCCCCcccCCce
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP-------PY---------LN--HELTCPVKTDSSF   79 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~-------~~---------l~--g~L~~~I~~d~s~   79 (144)
                      .|++.+.++.+.+.|.+.|| |++++||+|.+.++.|.|...-..       .+         |.  -.|...|+++..+
T Consensus         4 ~P~~di~e~~~~~~v~~~lP-G~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~   82 (100)
T 3gla_A            4 VPRVDIKEEVNHFVLYADLP-GIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGIT   82 (100)
T ss_dssp             CCCEEEEECSSEEEEEEECT-TSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCE
T ss_pred             cCcEEEEECCCEEEEEEECC-CCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeE
Confidence            47899999999999999999 899999999999999999753110       01         22  3588899999999


Q ss_pred             EEeeCCEEEEEEEECC
Q 032235           80 WTLEDDVMHITLTKRD   95 (144)
Q Consensus        80 W~l~~~~l~I~L~K~~   95 (144)
                      .++++|.|.|+|.|..
T Consensus        83 A~~~~GvL~I~~pK~~   98 (100)
T 3gla_A           83 AAGRNGVLEIRIPKRP   98 (100)
T ss_dssp             EEEETTEEEEEEEBC-
T ss_pred             EEEeCCEEEEEEecCC
Confidence            9999999999999985

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=98.35  E-value=4.2e-06  Score=57.31  Aligned_cols=78  Identities=12%  Similarity=0.247  Sum_probs=65.5

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecC---CCc--------eec--CCCCCCcccCCceEEeeC
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPP--------YLN--HELTCPVKTDSSFWTLED   84 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g---~~~--------~l~--g~L~~~I~~d~s~W~l~~   84 (144)
                      .|.+.+.++.+.+.|.+.|| |++++||+|.+.++.|.|...-   ...        -|.  -.|...|+++..+.++++
T Consensus         6 ~P~~di~e~~~~~~v~~~lP-G~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~   84 (102)
T 4fei_A            6 TPAADWRDAGTHLDLLLDVP-GVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAG   84 (102)
T ss_dssp             CCCEEEEEETTEEEEEEECT-TCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEET
T ss_pred             cCcEEEEEcCCEEEEEEECC-CCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEEC
Confidence            47899999999999999999 9999999999999999996531   000        122  258889999999999999


Q ss_pred             CEEEEEEEECCC
Q 032235           85 DVMHITLTKRDK   96 (144)
Q Consensus        85 ~~l~I~L~K~~~   96 (144)
                      |.|.|+|.|..+
T Consensus        85 GvL~I~lpK~~~   96 (102)
T 4fei_A           85 GVLTVRFEKLRP   96 (102)
T ss_dssp             TEEEEEEEBSSC
T ss_pred             CEEEEEEEccCc
Confidence            999999999864

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=98.27  E-value=9e-06  Score=59.95  Aligned_cols=80  Identities=19%  Similarity=0.277  Sum_probs=65.3

Q ss_pred             CCCCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCCC---------------c--eec--CCCCCCcccC
Q 032235           16 NGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP---------------P--YLN--HELTCPVKTD   76 (144)
Q Consensus        16 ng~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~---------------~--~l~--g~L~~~I~~d   76 (144)
                      .+.+.+.+.++++.+.|.+.|| |++++||+|.+.++.|.|...-..               .  -|.  -.|...|+++
T Consensus        54 ~~~~pvdi~e~~~~~~v~~dlP-G~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~  132 (161)
T 4eld_A           54 KGFMPISIIEGDQHIKVIAWLP-GVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEE  132 (161)
T ss_dssp             ESCCCEEEEECSSEEEEEEECT-TCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGG
T ss_pred             CcccceeEEEeCCEEEEEEECC-CCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccc
Confidence            3344599999999999999998 899999999999999999654211               0  111  2588899999


Q ss_pred             CceEEeeCCEEEEEEEECCC
Q 032235           77 SSFWTLEDDVMHITLTKRDK   96 (144)
Q Consensus        77 ~s~W~l~~~~l~I~L~K~~~   96 (144)
                      ..+.++++|.|.|+|.|.+.
T Consensus       133 ~i~A~~~nGvL~I~lpK~~~  152 (161)
T 4eld_A          133 NASAKFENGVLSVILPKAES  152 (161)
T ss_dssp             GCEEEEETTEEEEEEEBCGG
T ss_pred             cEEEEEECCEEEEEEEcCCC
Confidence            99999999999999999754

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=98.13  E-value=1.8e-05  Score=55.75  Aligned_cols=78  Identities=10%  Similarity=0.161  Sum_probs=65.6

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEec-cEEEEEecCCC----c--------eec--CCCCCCcccCCc-eEE
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQS-KHIELGIKGNP----P--------YLN--HELTCPVKTDSS-FWT   81 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~-~~l~V~v~g~~----~--------~l~--g~L~~~I~~d~s-~W~   81 (144)
                      .|.+.+.++.+.+.|.+.|| |++++||+|.+.+ +.|.|+..-..    .        -|.  -.|...|+++.- +-+
T Consensus        24 ~P~~di~e~~~~~~v~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~  102 (123)
T 3aab_A           24 YPPVDMYEEGGYLVVVADLA-GFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGK  102 (123)
T ss_dssp             CSCEEEEEETTEEEEEEECC-SCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEE
T ss_pred             CCcEEEEEcCCEEEEEEECC-CCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeE
Confidence            48899999999999999999 8999999999999 99999766211    1        122  258888999998 999


Q ss_pred             eeCCEEEEEEEECCC
Q 032235           82 LEDDVMHITLTKRDK   96 (144)
Q Consensus        82 l~~~~l~I~L~K~~~   96 (144)
                      +++|.|.|+|.|...
T Consensus       103 ~~~GvL~I~lPK~~~  117 (123)
T 3aab_A          103 YENGVLTIRIPIAGT  117 (123)
T ss_dssp             EETTEEEEEEEGGGE
T ss_pred             EcCCEEEEEEEcCCC
Confidence            999999999999753

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=97.92  E-value=8.2e-05  Score=54.40  Aligned_cols=78  Identities=15%  Similarity=0.285  Sum_probs=64.2

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEe-ccEEEEEecCC-------Cce---------ec--CCCCCCcccCCc
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQ-SKHIELGIKGN-------PPY---------LN--HELTCPVKTDSS   78 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~-~~~l~V~v~g~-------~~~---------l~--g~L~~~I~~d~s   78 (144)
                      .|.+.+.++.+.+.|.+.|| |++++||+|.+. ++.|.|...-.       ..+         |.  -.|...|+++..
T Consensus        43 ~p~~di~e~~d~~~v~~dlP-Gv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i  121 (151)
T 1gme_A           43 NARMDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEV  121 (151)
T ss_dssp             GGCEEEEECSSEEEEEEECT-TCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGC
T ss_pred             CCceEEEEcCCEEEEEEECC-CCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccce
Confidence            57999999999999999999 899999999994 68999976411       011         21  248889999998


Q ss_pred             eEEeeCCEEEEEEEECCC
Q 032235           79 FWTLEDDVMHITLTKRDK   96 (144)
Q Consensus        79 ~W~l~~~~l~I~L~K~~~   96 (144)
                      +-++++|.|.|+|.|..+
T Consensus       122 ~A~~~nGvL~I~lPK~~~  139 (151)
T 1gme_A          122 KAGLENGVLTVTVPKAEV  139 (151)
T ss_dssp             EEEEETTEEEEEEECCCC
T ss_pred             EEEEECCEEEEEEEccCc
Confidence            999999999999999864

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=97.82  E-value=0.00028  Score=48.57  Aligned_cols=76  Identities=17%  Similarity=0.274  Sum_probs=62.9

Q ss_pred             cEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecC-----CCce----ec--CCCCCCcccCCceEEe-eCCEE
Q 032235           20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG-----NPPY----LN--HELTCPVKTDSSFWTL-EDDVM   87 (144)
Q Consensus        20 ~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g-----~~~~----l~--g~L~~~I~~d~s~W~l-~~~~l   87 (144)
                      .-...++.+.+.|.+.|| |++++||+|.+.++.|.|...-     +.-+    |.  -.|...|+++.-+-++ .+|.|
T Consensus         4 ~~~i~e~~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL   82 (106)
T 3l1e_A            4 ISEVRSDRDKFVIFLDVK-HFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGML   82 (106)
T ss_dssp             SEEEEECSSEEEEEEECT-TSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEE
T ss_pred             ceEEEEcCCEEEEEEECC-CCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEE
Confidence            457889999999999999 9999999999999999997531     1112    22  2588899999999999 78999


Q ss_pred             EEEEEECCC
Q 032235           88 HITLTKRDK   96 (144)
Q Consensus        88 ~I~L~K~~~   96 (144)
                      .|+|.|..+
T Consensus        83 ~I~~PK~~~   91 (106)
T 3l1e_A           83 TFSGPKIPS   91 (106)
T ss_dssp             EEEEEBCCC
T ss_pred             EEEEEccCc
Confidence            999999864

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=97.76  E-value=6.1e-05  Score=51.48  Aligned_cols=76  Identities=12%  Similarity=0.205  Sum_probs=62.2

Q ss_pred             cEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC-----Cce----ec--CCCCCCcccCCceEEe-eCCEE
Q 032235           20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----LN--HELTCPVKTDSSFWTL-EDDVM   87 (144)
Q Consensus        20 ~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~-----~~~----l~--g~L~~~I~~d~s~W~l-~~~~l   87 (144)
                      ...+.++++.+.|.+.|| |++++||+|.+.++.|.|...-+     ..+    |.  -.|...|+++.-+-++ .+|.|
T Consensus         3 ~vdi~e~~~~~~v~~dlP-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL   81 (101)
T 2wj5_A            3 MAQVPTDPGYFSVLLDVK-HFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVL   81 (101)
T ss_dssp             CCCCCCCSSCEEEEEECT-TSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEE
T ss_pred             cEEEEEeCCEEEEEEECC-CCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEE
Confidence            456789999999999999 99999999999999999875411     011    22  3688899999999999 79999


Q ss_pred             EEEEEECCC
Q 032235           88 HITLTKRDK   96 (144)
Q Consensus        88 ~I~L~K~~~   96 (144)
                      .|+|.|...
T Consensus        82 ~I~lPK~~~   90 (101)
T 2wj5_A           82 SIQATPASA   90 (101)
T ss_dssp             EEEECBCCC
T ss_pred             EEEEECCCc
Confidence            999999754

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=97.68  E-value=0.00022  Score=47.14  Aligned_cols=70  Identities=13%  Similarity=0.174  Sum_probs=57.4

Q ss_pred             EeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC-----Cce----ec--CCCCCCcccCCceEEee-CCEEEEEE
Q 032235           24 DQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----LN--HELTCPVKTDSSFWTLE-DDVMHITL   91 (144)
Q Consensus        24 ~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~-----~~~----l~--g~L~~~I~~d~s~W~l~-~~~l~I~L   91 (144)
                      ++|.+...|.+.|| |++++||+|.+..+.|.|...-.     .-+    |.  -.|...|+++.-+-++. +|.|.|+|
T Consensus         3 ~E~~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~l   81 (85)
T 3q9p_A            3 SHTADRWRVSLDVN-HFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEA   81 (85)
T ss_dssp             CCCCCEEEEEEECT-TTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEE
T ss_pred             cCcCCEEEEEEECC-CCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEE
Confidence            47899999999999 99999999999999999976411     011    32  25888999999999998 89999999


Q ss_pred             EEC
Q 032235           92 TKR   94 (144)
Q Consensus        92 ~K~   94 (144)
                      .|.
T Consensus        82 PK~   84 (85)
T 3q9p_A           82 PMP   84 (85)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            985

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=97.56  E-value=0.00018  Score=48.01  Aligned_cols=71  Identities=11%  Similarity=0.216  Sum_probs=54.6

Q ss_pred             eeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecC-----CCce----ec--CCCCCCcccCCceEEe-eCCEEEEEEE
Q 032235           25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG-----NPPY----LN--HELTCPVKTDSSFWTL-EDDVMHITLT   92 (144)
Q Consensus        25 Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g-----~~~~----l~--g~L~~~I~~d~s~W~l-~~~~l~I~L~   92 (144)
                      ++.+.+.|.+.|| |++++||+|.+.++.|.|...-     +..+    |.  -.|...|+++.-+-++ .+|.|.|+|.
T Consensus         3 ~~~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~p   81 (90)
T 2y1y_A            3 MEKDRFSVNLDVK-HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGP   81 (90)
T ss_dssp             ---CCEEEEEECT-TSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEEC
T ss_pred             cCCCEEEEEEECC-CCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEE
Confidence            5778899999999 9999999999999999987641     1111    22  3588899999999999 7999999999


Q ss_pred             ECCC
Q 032235           93 KRDK   96 (144)
Q Consensus        93 K~~~   96 (144)
                      |...
T Consensus        82 K~~~   85 (90)
T 2y1y_A           82 RKQV   85 (90)
T ss_dssp             BC--
T ss_pred             cCCC
Confidence            9753

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=97.17  E-value=0.00092  Score=50.11  Aligned_cols=76  Identities=13%  Similarity=0.210  Sum_probs=58.9

Q ss_pred             cEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC-----Cce----ec--CCCCCCcccCCceEEe-eCCEE
Q 032235           20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----LN--HELTCPVKTDSSFWTL-EDDVM   87 (144)
Q Consensus        20 ~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~-----~~~----l~--g~L~~~I~~d~s~W~l-~~~~l   87 (144)
                      .....++.+.+.|.+.|| |++++||+|++.++.|.|..+-+     .-+    |.  -.|...|+++.-+-++ ++|.|
T Consensus        65 ~~dv~e~~d~~~v~~dlP-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL  143 (175)
T 2klr_A           65 LSEMRLEKDRFSVNLDVK-HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVL  143 (175)
T ss_dssp             ----CCCCSEEEEEECCS-SCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCE
T ss_pred             ceEEEEcCCeEEEEEECC-CCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEE
Confidence            457889999999999999 99999999999999999865411     111    22  2588899999999999 78999


Q ss_pred             EEEEEECCC
Q 032235           88 HITLTKRDK   96 (144)
Q Consensus        88 ~I~L~K~~~   96 (144)
                      .|+|.|...
T Consensus       144 ~I~lPK~~~  152 (175)
T 2klr_A          144 TVNGPRKQV  152 (175)
T ss_dssp             EEEEECC--
T ss_pred             EEEEECCCC
Confidence            999999754

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=96.80  E-value=0.0055  Score=49.85  Aligned_cols=78  Identities=14%  Similarity=0.178  Sum_probs=63.6

Q ss_pred             CCcEEEEeeCC----EEEEEEECCCCCCCCceEEEEeccEEEEEecCCC----ce----ec--CCCCCCcccCCceEEee
Q 032235           18 QTVFEWDQTLD----EINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP----PY----LN--HELTCPVKTDSSFWTLE   83 (144)
Q Consensus        18 ~~~Y~W~Qt~~----~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~~----~~----l~--g~L~~~I~~d~s~W~l~   83 (144)
                      .+....+++.+    .+.|.+.|| |++++||+|++..+.|.|...-+.    ..    |.  -.|...|+++.-+-++.
T Consensus        98 ~p~vDi~E~~~dgk~~~~v~~dlP-G~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~  176 (314)
T 2bol_A           98 DFLKDAYEVGKDGRLHFKVYFNVK-NFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATIT  176 (314)
T ss_dssp             GGGGGCEEECTTSSEEEEEEEECT-TCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEEC
T ss_pred             CCccceEEcCCCCceEEEEEEECC-CCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEe
Confidence            45677778888    899999999 999999999999999999765211    01    22  25888999999999999


Q ss_pred             -CCEEEEEEEECCC
Q 032235           84 -DDVMHITLTKRDK   96 (144)
Q Consensus        84 -~~~l~I~L~K~~~   96 (144)
                       +|.|.|+|.|..+
T Consensus       177 ~nGVL~I~lPK~~~  190 (314)
T 2bol_A          177 TDDVLVIEAPVNEP  190 (314)
T ss_dssp             SSSEEEEEEEBSSC
T ss_pred             CCCEEEEEEeccCc
Confidence             8999999999764

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=95.00  E-value=0.074  Score=43.16  Aligned_cols=68  Identities=9%  Similarity=0.048  Sum_probs=53.2

Q ss_pred             eCCEEEEEEEC-CCCCCCCceEEEEeccEEEEEecCC---Cc-------e--ec--CCCCCCcccCCceEEeeCCEEEEE
Q 032235           26 TLDEINIYINL-PPNVHSKQFYCKIQSKHIELGIKGN---PP-------Y--LN--HELTCPVKTDSSFWTLEDDVMHIT   90 (144)
Q Consensus        26 t~~~V~V~v~l-p~~~~~kdv~V~~~~~~l~V~v~g~---~~-------~--l~--g~L~~~I~~d~s~W~l~~~~l~I~   90 (144)
                      +.+.+.|.+.| | |++++||+|++..+.|+|+..-+   ..       +  |.  -.|...|+++.-+-++++|.|.|+
T Consensus       231 ~~~~~~v~~~ldP-G~~~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~dGvL~i~  309 (314)
T 2bol_A          231 GSKKIHLELKVDP-HFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVE  309 (314)
T ss_dssp             SCEEEEEEEECCT-TCCGGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEEETTEEEEE
T ss_pred             CCcEEEEEEEcCC-CCChHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEEeCCEEEEE
Confidence            44578999999 6 99999999999999999865411   01       1  22  247788999999999999999999


Q ss_pred             EEEC
Q 032235           91 LTKR   94 (144)
Q Consensus        91 L~K~   94 (144)
                      |-|.
T Consensus       310 ~Pk~  313 (314)
T 2bol_A          310 APLF  313 (314)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            9885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d1wfia_	131	b.15.1.4 (A:) Nuclear migration protein nudC {Mous	1e-29
d1wgva_	124	b.15.1.4 (A:) NudC domain containing protein 3, NU	1e-22
d1rl1a_	92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	5e-15
d1ejfa_	110	b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien	8e-10
d1wh0a_	134	b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolas	0.003

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Length = 131

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (255), Expect = 1e-29
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 5/112 (4%)

Query: 16  NGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTC 71
           +G +   + W QTL E+++ +   +   +  K     IQ +H+ +G+KG PP ++ EL  
Sbjct: 3   SGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYN 62

Query: 72  PVKTDSSFWTLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
            VK + S W +ED  V+ + L K +K + W   +    +++    + E  +L
Sbjct: 63  EVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKL 114

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (209), Expect = 1e-22
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 21  FEWDQTLDEINIYINLPPN-VHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTD 76
           + W Q   ++ + + +P + V  KQ    + S  I + +         +  +LT  + T+
Sbjct: 22  YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 81

Query: 77  SSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDP 112
           SS W+LE     +    +     W + + G+  +D 
Sbjct: 82  SSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDI 117

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 5e-15
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDS 77
           ++W QT  ++ I + +  NV       +   K +   +K   G    L  EL  P+  + 
Sbjct: 5   YDWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ 63

Query: 78  SFWTLEDDVMHITLTKRDKGQTWAS 102
           S + +    + I L K +    W  
Sbjct: 64  STFKVLSTKIEIKLKKPE-AVRWEK 87

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 8e-10
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 3/98 (3%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIEL--GIKGNPPYLNHELTCPVKTDSS 78
            +W    D + I   +  +        +          G          +L   +  + S
Sbjct: 6   AKWYDRRDYVFIEFCVE-DSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDS 64

Query: 79  FWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTD 116
                D  +   L K + GQ+W      + +L+    D
Sbjct: 65  KHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVD 102

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 0.003
 Identities = 9/95 (9%), Positives = 28/95 (29%), Gaps = 17/95 (17%)

Query: 23  WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG--NPPYLNH------------- 67
           +++  D + +++ +   +         + +   L  +         H             
Sbjct: 25  YEKGPDSVVVHVYVK-EICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQV 83

Query: 68  ELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWAS 102
           +L   ++ +   +      + I L KR   + W  
Sbjct: 84  KLRNLIEPEQCTFCFTASRIDICLRKRQSQR-WGG 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	99.95
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	99.93
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	99.85
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	99.84
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	99.61
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	97.84
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	97.67

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.4e-28  Score=176.19  Aligned_cols=100  Identities=27%  Similarity=0.553  Sum_probs=91.6

Q ss_pred             CCcEEEEeeCCEEEEEEEC--CCCCCCCceEEEEeccEEEEEecCCCceecCCCCCCcccCCceEEeeCC-EEEEEEEEC
Q 032235           18 QTVFEWDQTLDEINIYINL--PPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHITLTKR   94 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~l--p~~~~~kdv~V~~~~~~l~V~v~g~~~~l~g~L~~~I~~d~s~W~l~~~-~l~I~L~K~   94 (144)
                      +++|+|+||.++|+|+|++  |.+++++||.|+|++++|.|.++|++++++|+||++|++++|+|+++++ .++|+|.|+
T Consensus         7 ~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~~~~~ll~g~L~~~I~~des~W~ied~~~l~i~L~K~   86 (131)
T d1wfia_           7 GPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKI   86 (131)
T ss_dssp             CCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTTCEEEEETTTEEEEEEEBS
T ss_pred             CCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEcCCceeecccccCcccccccEEEEeCCCEEEEEEEEC
Confidence            6899999999999999876  5578999999999999999999997789999999999999999999986 689999999


Q ss_pred             CCCCCcCcccCCCCCCChhhHHH
Q 032235           95 DKGQTWASPIMGQGQLDPYVTDQ  117 (144)
Q Consensus        95 ~~~~~W~~L~~g~~~id~~~~~e  117 (144)
                      .++.||++|++|+++||+...+.
T Consensus        87 ~~~~~W~~l~~gd~~id~~~~~~  109 (131)
T d1wfia_          87 NKMEWWNRLVTSDPEINTKKINP  109 (131)
T ss_dssp             SSCCCCSCSBSSCCSCCCSSSSC
T ss_pred             CCCccCHHHcCCCCCCCHhHcCc
Confidence            88899999999999999876554

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-26  Score=163.38  Aligned_cols=99  Identities=23%  Similarity=0.441  Sum_probs=85.3

Q ss_pred             ecCCC--CcEEEEeeCCEEEEEEECCCC-CCCCceEEEEeccEEEEEecCC---CceecCCCCCCcccCCceEEeeCCEE
Q 032235           14 LHNGQ--TVFEWDQTLDEINIYINLPPN-VHSKQFYCKIQSKHIELGIKGN---PPYLNHELTCPVKTDSSFWTLEDDVM   87 (144)
Q Consensus        14 ~~ng~--~~Y~W~Qt~~~V~V~v~lp~~-~~~kdv~V~~~~~~l~V~v~g~---~~~l~g~L~~~I~~d~s~W~l~~~~l   87 (144)
                      ++||+  ++|+|+||.++|+|+|+||++ ++++||.|+|++++|.|.+++.   .++++|+||++|++++|+|+++++++
T Consensus        13 ~~nG~~~~~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~~~l~v~v~~~~~~~~~l~g~L~~~I~~deS~w~i~~~~~   92 (124)
T d1wgva_          13 SYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKC   92 (124)
T ss_dssp             SSSSBCCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSE
T ss_pred             CcCCcCCCCeEEEeECCEEEEEEEeCCCCcchhhEEEEEEeCEEEEEEeccCCcceEEeCcccCcccccccEEEEeCCCE
Confidence            35664  689999999999999999987 5789999999999999998853   35799999999999999999999875


Q ss_pred             EE-EEEECCCCCCcCcccCCCCCCChh
Q 032235           88 HI-TLTKRDKGQTWASPIMGQGQLDPY  113 (144)
Q Consensus        88 ~I-~L~K~~~~~~W~~L~~g~~~id~~  113 (144)
                      .+ .|+|. .+.||++|++|+++||+.
T Consensus        93 ~i~~lkK~-~~~~W~~L~~ge~~id~~  118 (124)
T d1wgva_          93 VLVNLSKV-GEYWWNAILEGEEPIDID  118 (124)
T ss_dssp             EEEEECBS-SSCCCSCSBTTSCCCSCC
T ss_pred             EEEEEEec-CCCcChhhccCCccccCC
Confidence            55 55555 568999999999999864

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.3e-21  Score=131.61  Aligned_cols=86  Identities=20%  Similarity=0.310  Sum_probs=77.4

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecC---CCceecCCCCCCcccCCceEEeeCCEEEEEEEEC
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g---~~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~   94 (144)
                      ..+|.|+||.++|+|+|++| ++.++++.|++++++|+|.+.+   ..+.++++||++|+|++|+|++.+++|+|+|.|+
T Consensus         2 k~ry~W~Qt~~~V~i~i~~~-~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~~~~~kiei~L~K~   80 (92)
T d1rl1a_           2 KIKYDWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKP   80 (92)
T ss_dssp             CCCEEEEECSSEEEEEECCC-SCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEECS
T ss_pred             CCceeEEeCCCEEEEEEEeC-CCChHheEEEEecCEEEEEEEcCCCcEEEEEEEcCcccCchhcEEEEeCCEEEEEEEEC
Confidence            46899999999999999997 8889999999999999998763   3346999999999999999999999999999999


Q ss_pred             CCCCCcCcccC
Q 032235           95 DKGQTWASPIM  105 (144)
Q Consensus        95 ~~~~~W~~L~~  105 (144)
                      ++ .+|++|.+
T Consensus        81 ~~-~~W~~L~~   90 (92)
T d1rl1a_          81 EA-VRWEKLEG   90 (92)
T ss_dssp             SC-CCCSSSBT
T ss_pred             CC-CcCcCccc
Confidence            76 58999854

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.4e-21  Score=133.80  Aligned_cols=90  Identities=17%  Similarity=0.254  Sum_probs=81.1

Q ss_pred             CcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC----CceecCCCCCCcccCCceEEeeCCEEEEEEEEC
Q 032235           19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN----PPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (144)
Q Consensus        19 ~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~----~~~l~g~L~~~I~~d~s~W~l~~~~l~I~L~K~   94 (144)
                      ++|.|+||.++|+|+|++|   +.++++|+|+.+++.|++.+.    ..+++++||++|+|++|+|++.+++|+|+|.|+
T Consensus         4 ~~~~W~Qt~~~V~i~I~v~---~~~~~~v~i~~~~l~~~~~~~~~~~~y~l~~~L~~~I~~~~s~~~v~~~kiei~L~K~   80 (110)
T d1ejfa_           4 ASAKWYDRRDYVFIEFCVE---DSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKG   80 (110)
T ss_dssp             CCEEEEECSSEEEEEECCT---TEEEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEES
T ss_pred             CCcEEEECCCEEEEEEEeC---CCCCceEEEEeceEEEEEEecCCCceEEEEEEcccCcccCccEEEEeCCEEEEEEEEc
Confidence            5799999999999999998   467899999999999987642    236999999999999999999999999999999


Q ss_pred             CCCCCcCcccCCCCCCC
Q 032235           95 DKGQTWASPIMGQGQLD  111 (144)
Q Consensus        95 ~~~~~W~~L~~g~~~id  111 (144)
                      ++|.+|++|++++++++
T Consensus        81 ~~~~~W~~L~~~~~K~~   97 (110)
T d1ejfa_          81 ESGQSWPRLTKERAKLN   97 (110)
T ss_dssp             STTCCCSSSBSSCCCCT
T ss_pred             CCCCCCCceecCCCCcC
Confidence            88899999999998765

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.4e-15  Score=108.02  Aligned_cols=91  Identities=10%  Similarity=0.130  Sum_probs=77.3

Q ss_pred             CCcEEEEeeC-CEEEEEEECCCCCCCCceEEEEeccEEEEEecC--------------C-CceecCCCCCCcccCCceEE
Q 032235           18 QTVFEWDQTL-DEINIYINLPPNVHSKQFYCKIQSKHIELGIKG--------------N-PPYLNHELTCPVKTDSSFWT   81 (144)
Q Consensus        18 ~~~Y~W~Qt~-~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g--------------~-~~~l~g~L~~~I~~d~s~W~   81 (144)
                      ..++.|+|+. +.|+|+|.+. ++.++++.|+|++++|.|.+..              + ...++..||++|+|++|+|.
T Consensus        19 ~ir~dwyq~~~~~V~VtI~~K-~v~ke~~~V~f~~~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~S~~~   97 (134)
T d1wh0a_          19 FVKNDSYEKGPDSVVVHVYVK-EICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFC   97 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECC-SBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEE
T ss_pred             ccccceeecCCCEEEEEEEeC-CCchhheEEEEeCCEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhHcEEE
Confidence            4589999985 7899999876 8999999999999999999852              1 12367789999999999999


Q ss_pred             eeCCEEEEEEEECCCCCCcCcccCCCCCC
Q 032235           82 LEDDVMHITLTKRDKGQTWASPIMGQGQL  110 (144)
Q Consensus        82 l~~~~l~I~L~K~~~~~~W~~L~~g~~~i  110 (144)
                      +.+++|+|+|.|+++ .+|++|......+
T Consensus        98 v~~~kiei~L~K~~~-~~W~~Le~~~~~~  125 (134)
T d1wh0a_          98 FTASRIDICLRKRQS-QRWGGLEAPAARV  125 (134)
T ss_dssp             ECSSEEEEEEEESSS-CCCSCSBCCCSCC
T ss_pred             eCCCEEEEEEEeCCC-CcCcCcccccccc
Confidence            999999999999976 5899998655433

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.84  E-value=9.3e-05  Score=49.58  Aligned_cols=82  Identities=17%  Similarity=0.231  Sum_probs=65.7

Q ss_pred             ecCCCCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccEEEEEecCC-------C-ce---------e--cCCCCCCcc
Q 032235           14 LHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-------P-PY---------L--NHELTCPVK   74 (144)
Q Consensus        14 ~~ng~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~l~V~v~g~-------~-~~---------l--~g~L~~~I~   74 (144)
                      ..-|-+++...++++.+.|.+.|| |++++|+.|.+.++.|.|+..-.       . .+         |  .-.|...|+
T Consensus         6 ~~~~~~pvdi~e~~~~~~i~~~lP-G~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd   84 (115)
T d1shsa_           6 SGKGFMPISIIEGDQHIKVIAWLP-GVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVK   84 (115)
T ss_dssp             EEESCCCEEEEECSSEEEEEEECT-TCCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBC
T ss_pred             CCCCcCceEEEEcCCEEEEEEECC-CCCHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCcee
Confidence            344556799999999999999999 89999999999999999976411       0 01         1  124667899


Q ss_pred             cCCceEEeeCCEEEEEEEECCC
Q 032235           75 TDSSFWTLEDDVMHITLTKRDK   96 (144)
Q Consensus        75 ~d~s~W~l~~~~l~I~L~K~~~   96 (144)
                      ++....++++|.|.|+|.|.+.
T Consensus        85 ~~~i~A~~~nGvL~I~lpK~~~  106 (115)
T d1shsa_          85 EENASAKFENGVLSVILPKAES  106 (115)
T ss_dssp             GGGCEEEEETTEEEEEEEBCGG
T ss_pred             ecceEEEEECCEEEEEEEeCCC
Confidence            9999999999999999999753

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=97.67  E-value=0.00026  Score=49.69  Aligned_cols=78  Identities=15%  Similarity=0.291  Sum_probs=61.0

Q ss_pred             CCcEEEEeeCCEEEEEEECCCCCCCCceEEEEeccE-EEEEecCC-------Cce---------ec--CCCCCCcccCCc
Q 032235           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKH-IELGIKGN-------PPY---------LN--HELTCPVKTDSS   78 (144)
Q Consensus        18 ~~~Y~W~Qt~~~V~V~v~lp~~~~~kdv~V~~~~~~-l~V~v~g~-------~~~---------l~--g~L~~~I~~d~s   78 (144)
                      .+++.+.++++.+.|.+.|| |++++||+|+++.+. +.++....       ..+         |.  -.|...|+++.-
T Consensus        42 ~p~~dv~e~~~~~~i~~~lP-G~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i  120 (150)
T d1gmea_          42 NARMDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEV  120 (150)
T ss_dssp             GGCEEEEECSSEEEEEEECT-TCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGC
T ss_pred             CCceeEEECCCEEEEEEEeC-CCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeecee
Confidence            46899999999999999999 999999999998755 45543210       011         11  247788999998


Q ss_pred             eEEeeCCEEEEEEEECCC
Q 032235           79 FWTLEDDVMHITLTKRDK   96 (144)
Q Consensus        79 ~W~l~~~~l~I~L~K~~~   96 (144)
                      .-++++|.|.|+|.|.++
T Consensus       121 ~A~~~nGvL~I~lpK~~~  138 (150)
T d1gmea_         121 KAGLENGVLTVTVPKAEV  138 (150)
T ss_dssp             EEEEETTEEEEEEECCCC
T ss_pred             EEEEECCEEEEEEEcCCc
Confidence            899999999999999754