Citrus Sinensis ID: 032306

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MAYVFNVQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAYVFNVQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRtrldledgvgspeqALLKEHASinrstgqmDSVISQAQATLGALVFQrstfgginsklsnvssrlpsVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Flexible Loop (DISEMBL)
mayvfnvqslgTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSklsnvssrlpsVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Low Complexity Region (SEG)
MAYVFNVQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Disordered region (IsUnstruct)
**YVFNVQSLGTEFYRLR*********************************************************AQATLGALVFQRSTFGGINSK***********NQILSSIKRKKSMDTIILALVASVCTFLIFIYWV**
Disordered Region (DISOPRED)
*AYVFNVQSLGTEFYRLRS*****************************************************ISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Disordered Region (DISEMBL)
MAYVFNVQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Disordered Region (DISPRO)
*AYVFNVQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTR******VGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYVFNVQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q9LMP7	223	Golgi SNAP receptor compl	yes	no	0.951	0.609	0.832	4e-62
O22151	257	Golgi SNAP receptor compl	no	no	0.874	0.486	0.392	5e-21
O88630	250	Golgi SNAP receptor compl	yes	no	0.888	0.508	0.294	2e-10
O95249	250	Golgi SNAP receptor compl	no	no	0.888	0.508	0.294	2e-10
Q62931	250	Golgi SNAP receptor compl	yes	no	0.888	0.508	0.294	2e-10
O08522	250	Golgi SNAP receptor compl	yes	no	0.888	0.508	0.294	3e-10
Q2TBU3	250	Golgi SNAP receptor compl	yes	no	0.888	0.508	0.302	4e-10
Q5RBL6	248	Golgi SNAP receptor compl	yes	no	0.888	0.512	0.287	7e-10
P38736	223	Golgi SNAP receptor compl	yes	no	0.888	0.569	0.242	9e-08
Q95ZW1	234	Golgi SNAP receptor compl	yes	no	0.587	0.358	0.356	1e-07

>sp|Q9LMP7|GOS11_ARATH Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1

 Score =  236 bits (601), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/137 (83%), Positives = 125/137 (91%), Gaps = 1/137 (0%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRST 66
           +Q L  EFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS EQAL+KEH  INR+T
Sbjct: 88  LQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGS-EQALIKEHMGINRNT 146

Query: 67  GQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126
            QMD VISQAQATLG LVFQRSTFGGINSKLSNV+SRLP+VN IL++IKRKKSMDTIIL+
Sbjct: 147 AQMDGVISQAQATLGTLVFQRSTFGGINSKLSNVASRLPTVNTILAAIKRKKSMDTIILS 206

Query: 127 LVASVCTFLIFIYWVTK 143
           LVA+VCTFLIFIYW+TK
Sbjct: 207 LVAAVCTFLIFIYWITK 223

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
Arabidopsis thaliana (taxid: 3702)

>sp|O22151|GOS12_ARATH Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 10/135 (7%)

Query: 13  EFYRLRSSLKAKQEHASLL----EDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQ 68
           EF R++ ++ + +EHA LL    +D  E+  +      G  SP   +L+E ASI+ S   
Sbjct: 129 EFRRIKGNINSLREHAELLSSVRDDISEYKAS------GSMSPGVQVLRERASIHGSISH 182

Query: 69  MDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALV 128
           +D VI QAQAT   L  QRS F  +  K+ N+  + P +  +L SIKRK+S DT+IL+ V
Sbjct: 183 IDDVIGQAQATRAVLGSQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRKRSRDTLILSAV 242

Query: 129 ASVCTFLIFIYWVTK 143
            + CT  + IYW++K
Sbjct: 243 IAACTLFLIIYWLSK 257

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.

Arabidopsis thaliana (taxid: 3702)

>sp|O88630|GOSR1_MOUSE Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 12/139 (8%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHA 60
           +Q    EF++ +++  A +E  +L+   R+      D+E      GV +    L LKEH 
Sbjct: 115 LQDYTHEFHKTKANFTAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHD 168

Query: 61  SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSM 120
            +  S   ++  IS A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  
Sbjct: 169 HLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRR 228

Query: 121 DTIILALVASVCTFLIFIY 139
           D++IL  V  +CT L+ +Y
Sbjct: 229 DSLILGGVIGICTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Mus musculus (taxid: 10090)

>sp|O95249|GOSR1_HUMAN Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 12/139 (8%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHA 60
           +Q    EF++ +++  A +E  +L+   R+      D+E      GV +    L LKEH 
Sbjct: 115 LQDYTHEFHKTKANFMAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHD 168

Query: 61  SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSM 120
            +  S   ++  IS A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  
Sbjct: 169 HLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRR 228

Query: 121 DTIILALVASVCTFLIFIY 139
           D++IL  V  +CT L+ +Y
Sbjct: 229 DSLILGGVIGICTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Homo sapiens (taxid: 9606)

>sp|Q62931|GOSR1_RAT Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 12/139 (8%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHA 60
           +Q    EF++ +++  A +E  +L+   R+      D+E      GV +    L LKEH 
Sbjct: 115 LQDYTHEFHKTKANFMAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHD 168

Query: 61  SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSM 120
            +  S   ++  IS A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  
Sbjct: 169 HLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRR 228

Query: 121 DTIILALVASVCTFLIFIY 139
           D++IL  V  +CT L+ +Y
Sbjct: 229 DSLILGGVIGICTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Rattus norvegicus (taxid: 10116)

>sp|O08522|GOSR1_CRIGR Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 12/139 (8%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHA 60
           +Q    EF++ +++  A +E  +L+   R+      D+E      GV +    L LKEH 
Sbjct: 115 LQDYTHEFHKTKANFMAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHD 168

Query: 61  SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSM 120
            +  S   ++  IS A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  
Sbjct: 169 HLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRR 228

Query: 121 DTIILALVASVCTFLIFIY 139
           D++IL  V  +CT L+ +Y
Sbjct: 229 DSLILGGVIGICTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Cricetulus griseus (taxid: 10029)

>sp|Q2TBU3|GOSR1_BOVIN Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 12/139 (8%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHA 60
           +Q    EF++ +++  A +E  +L+   R+      D+E      GV +    L LKEH 
Sbjct: 115 LQDYTHEFHKTKANFVAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHD 168

Query: 61  SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSM 120
            +  S   ++  IS A AT   +  QR     I SK++ +++R P+VN ++  I  +K  
Sbjct: 169 HLRNSDRLIEETISIAMATKENMTSQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRR 228

Query: 121 DTIILALVASVCTFLIFIY 139
           D++IL  V  VCT L+ +Y
Sbjct: 229 DSLILGGVIGVCTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Bos taurus (taxid: 9913)

>sp|Q5RBL6|GOSR1_PONAB Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 12/139 (8%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHA 60
           +Q    EF++ +++  + +E  +L+   R+      D+E      GV +    L LKEH 
Sbjct: 113 LQDYTHEFHKTKANFMSIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHD 166

Query: 61  SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSM 120
            +  S   ++  IS A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  
Sbjct: 167 HLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRR 226

Query: 121 DTIILALVASVCTFLIFIY 139
           D++IL  V  +CT L+ +Y
Sbjct: 227 DSLILGGVIGICTILLLLY 245

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Pongo abelii (taxid: 9601)

>sp|P38736|GOSR1_YEAST Golgi SNAP receptor complex member 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GOS1 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 1/128 (0%)

Query: 14  FYRLRSSLKAKQEHASLLEDFR-EFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSV 72
           F  +RSS++ ++   +LL   + +   +  D    +G  ++ +  E   I++S   +D +
Sbjct: 96  FRNIRSSIQQERNRLNLLFSVKNDIANSTTDAPAPIGDADEYIQNETRRIDQSNNVVDRL 155

Query: 73  ISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVC 132
           ISQA  T      Q +     N+K+     R+P VNQ++  I  ++  +  +LA + ++C
Sbjct: 156 ISQAWETRSQFHSQSNVLNTANNKVLQTLQRIPGVNQLIMKINTRRKKNAFVLATITTLC 215

Query: 133 TFLIFIYW 140
              +F  W
Sbjct: 216 ILFLFFTW 223

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. Rescues alpha-factor maturation defects.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q95ZW1|GOSR1_CAEEL Golgi SNAP receptor complex member 1 OS=Caenorhabditis elegans GN=gos-28 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 56  LKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK 115
           LKE+  IN     +D  +  A +T   +  Q     GI+++L ++S + P++N ++  IK
Sbjct: 148 LKENDHINACDRLLDEQLEMAMSTKENMARQGINLRGISTRLHHISKKYPAINNLMQKIK 207

Query: 116 RKKSMDTIILALVASVCTFLIF-IYWV 141
            KK  +T+ILA V S C  LIF I+W+
Sbjct: 208 TKKQKNTLILAAVISSC--LIFTIFWI 232

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. Cooperates with ykt-6 for proper expression of Golgi-resident proteins. Required along with ykt-6 for normal embryonic development, seam cell division or differentiation, and ray formation.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
255572761	253	golgi snare 11 protein, putative [Ricinu	0.958	0.541	0.868	5e-64
449468924	228	PREDICTED: Golgi SNAP receptor complex m	0.958	0.600	0.846	3e-63
224057553	226	predicted protein [Populus trichocarpa]	0.958	0.606	0.839	2e-62
224072701	228	predicted protein [Populus trichocarpa]	0.958	0.600	0.839	4e-62
225430378	220	PREDICTED: Golgi SNARE 11 protein [Vitis	0.951	0.618	0.854	1e-60
6850926	188	hypothetical protein [Cicer arietinum]	0.951	0.723	0.838	2e-60
18394296	223	Golgi SNARE 11 protein [Arabidopsis thal	0.951	0.609	0.832	3e-60
297850012	223	hypothetical protein ARALYDRAFT_471787 [	0.951	0.609	0.824	9e-60
388497022	241	unknown [Medicago truncatula]	0.944	0.560	0.837	2e-59
388508504	216	unknown [Lotus japonicus]	0.958	0.634	0.802	1e-58

>gi|255572761|ref|XP_002527313.1| golgi snare 11 protein, putative [Ricinus communis] gi|223533313|gb|EEF35065.1| golgi snare 11 protein, putative [Ricinus communis]

 Score =  248 bits (633), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 130/137 (94%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRST 66
           +Q L  EF+RLRSSL+AKQEHASLLEDFREFDRTRLDLEDGVGS EQALL+EHASI R+T
Sbjct: 88  LQDLTQEFHRLRSSLRAKQEHASLLEDFREFDRTRLDLEDGVGSTEQALLREHASIGRNT 147

Query: 67  GQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126
           GQMD+VISQAQATLGALV QRSTFGGINSKLSNVSSRLP+VN IL++IKRKKSMDTIIL+
Sbjct: 148 GQMDNVISQAQATLGALVLQRSTFGGINSKLSNVSSRLPTVNHILTAIKRKKSMDTIILS 207

Query: 127 LVASVCTFLIFIYWVTK 143
           LVASVCTFLIFIYW+TK
Sbjct: 208 LVASVCTFLIFIYWLTK 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468924|ref|XP_004152171.1| PREDICTED: Golgi SNAP receptor complex member 1-1-like [Cucumis sativus] gi|449484796|ref|XP_004156982.1| PREDICTED: Golgi SNAP receptor complex member 1-1-like [Cucumis sativus]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 116/137 (84%), Positives = 130/137 (94%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRST 66
           +Q L  EFYRLRSSL+AKQEHASLL+DFREFDR+RL+LEDG+G+ EQ LLKEHA+I RST
Sbjct: 92  LQDLTQEFYRLRSSLRAKQEHASLLDDFREFDRSRLELEDGLGTAEQTLLKEHATIGRST 151

Query: 67  GQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126
           GQMD+VISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVN IL++IKRKKSMDTIIL+
Sbjct: 152 GQMDNVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNHILAAIKRKKSMDTIILS 211

Query: 127 LVASVCTFLIFIYWVTK 143
           LVAS+CTFLIFIYW+TK
Sbjct: 212 LVASICTFLIFIYWLTK 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057553|ref|XP_002299264.1| predicted protein [Populus trichocarpa] gi|222846522|gb|EEE84069.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/137 (83%), Positives = 130/137 (94%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRST 66
           +Q L  EF+RLRS ++AKQEHA LLEDFREFDRTRLDLEDGVGS +QALL+EHASI+R+T
Sbjct: 90  LQDLTQEFHRLRSGMRAKQEHALLLEDFREFDRTRLDLEDGVGSADQALLREHASISRNT 149

Query: 67  GQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126
           GQMD+VISQAQATLG+LV QRSTFGGINSKLSNVSSRLP+VNQILS+IKR+KSMD+IIL+
Sbjct: 150 GQMDNVISQAQATLGSLVLQRSTFGGINSKLSNVSSRLPTVNQILSAIKRRKSMDSIILS 209

Query: 127 LVASVCTFLIFIYWVTK 143
           LVASVCTFLIFIYWVTK
Sbjct: 210 LVASVCTFLIFIYWVTK 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072701|ref|XP_002303840.1| predicted protein [Populus trichocarpa] gi|222841272|gb|EEE78819.1| predicted protein [Populus trichocarpa]

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 115/137 (83%), Positives = 129/137 (94%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRST 66
           +Q L  EF+RLRS ++AKQEHA LLEDFREFDRTRLDLEDGVGS +QALL+EHASI+R+T
Sbjct: 92  LQDLTQEFHRLRSGMRAKQEHALLLEDFREFDRTRLDLEDGVGSADQALLREHASISRNT 151

Query: 67  GQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126
           GQMD+VISQAQ+TLGALV QRSTFGGINSKLSNVSSRLP+VNQILS+IKRKKSMD IIL+
Sbjct: 152 GQMDNVISQAQSTLGALVLQRSTFGGINSKLSNVSSRLPTVNQILSAIKRKKSMDAIILS 211

Query: 127 LVASVCTFLIFIYWVTK 143
           LVASVCTFLIFIYW+TK
Sbjct: 212 LVASVCTFLIFIYWLTK 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430378|ref|XP_002285330.1| PREDICTED: Golgi SNARE 11 protein [Vitis vinifera] gi|296082080|emb|CBI21085.3| unnamed protein product [Vitis vinifera]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 129/137 (94%), Gaps = 1/137 (0%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRST 66
           +Q L  EFYRLRSS +AK+EHASLLEDFREFDR+RLDLE+G GS EQALLKEHASI+RST
Sbjct: 85  LQDLTQEFYRLRSSFRAKKEHASLLEDFREFDRSRLDLEEGGGS-EQALLKEHASISRST 143

Query: 67  GQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126
           GQMD+VISQAQATLGALVFQRSTFGGINSKLSNVSSRLP+VN ILS+IKRKKS+DTIIL+
Sbjct: 144 GQMDTVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPTVNNILSAIKRKKSLDTIILS 203

Query: 127 LVASVCTFLIFIYWVTK 143
           LVASVCTFLI IYW+TK
Sbjct: 204 LVASVCTFLILIYWLTK 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6850926|emb|CAB71130.1| hypothetical protein [Cicer arietinum]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/136 (83%), Positives = 126/136 (92%)

Query: 8   QSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTG 67
           Q L  EFYRLRS+L+AKQEHASLL+DF+EFDRTRLDLE+G GS +Q LLKE ASI+RSTG
Sbjct: 53  QDLTQEFYRLRSNLRAKQEHASLLDDFKEFDRTRLDLEEGSGSEQQTLLKERASISRSTG 112

Query: 68  QMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILAL 127
           QMD+VISQAQATLGALVFQRSTFGGINSKLSNVSSRLP+VN ILS+IKRKKSMDTIIL+L
Sbjct: 113 QMDTVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPTVNNILSAIKRKKSMDTIILSL 172

Query: 128 VASVCTFLIFIYWVTK 143
           V SVC FLIFIYW+TK
Sbjct: 173 VGSVCIFLIFIYWLTK 188

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394296|ref|NP_563985.1| Golgi SNARE 11 protein [Arabidopsis thaliana] gi|27805476|sp|Q9LMP7.1|GOS11_ARATH RecName: Full=Golgi SNAP receptor complex member 1-1; AltName: Full=Golgi SNARE 11 protein; Short=AtGOS11 gi|8927666|gb|AAF82157.1|AC034256_21 Contains similarity to GOS28/P28 protein from Homo sapiens gb|AF047438. ESTs gb|F14225, gb|AA395297, gb|BE038320 come from this gene [Arabidopsis thaliana] gi|12083260|gb|AAG48789.1|AF332426_1 unknown protein [Arabidopsis thaliana] gi|13898893|gb|AAK48904.1|AF357528_1 Golgi SNARE 11 protein [Arabidopsis thaliana] gi|15294144|gb|AAK95249.1|AF410263_1 At1g15880/F7H2_20 [Arabidopsis thaliana] gi|20147267|gb|AAM10347.1| At1g15880/F7H2_20 [Arabidopsis thaliana] gi|332191257|gb|AEE29378.1| Golgi SNARE 11 protein [Arabidopsis thaliana]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/137 (83%), Positives = 125/137 (91%), Gaps = 1/137 (0%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRST 66
           +Q L  EFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS EQAL+KEH  INR+T
Sbjct: 88  LQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGS-EQALIKEHMGINRNT 146

Query: 67  GQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126
            QMD VISQAQATLG LVFQRSTFGGINSKLSNV+SRLP+VN IL++IKRKKSMDTIIL+
Sbjct: 147 AQMDGVISQAQATLGTLVFQRSTFGGINSKLSNVASRLPTVNTILAAIKRKKSMDTIILS 206

Query: 127 LVASVCTFLIFIYWVTK 143
           LVA+VCTFLIFIYW+TK
Sbjct: 207 LVAAVCTFLIFIYWITK 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850012|ref|XP_002892887.1| hypothetical protein ARALYDRAFT_471787 [Arabidopsis lyrata subsp. lyrata] gi|297338729|gb|EFH69146.1| hypothetical protein ARALYDRAFT_471787 [Arabidopsis lyrata subsp. lyrata]

 Score =  234 bits (597), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 113/137 (82%), Positives = 125/137 (91%), Gaps = 1/137 (0%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRST 66
           +Q L  EFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS EQ+L+KEH  INR+T
Sbjct: 88  LQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGS-EQSLIKEHMGINRNT 146

Query: 67  GQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126
            QMD VISQAQATLG LVFQRSTFGGINSKLSNV+SRLP+VN IL++IKRKKSMDTIIL+
Sbjct: 147 AQMDGVISQAQATLGTLVFQRSTFGGINSKLSNVASRLPTVNTILAAIKRKKSMDTIILS 206

Query: 127 LVASVCTFLIFIYWVTK 143
           LVA+VCTFLIFIYW+TK
Sbjct: 207 LVAAVCTFLIFIYWITK 223

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497022|gb|AFK36577.1| unknown [Medicago truncatula]

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/135 (83%), Positives = 124/135 (91%)

Query: 8   QSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTG 67
           Q L  EFYRLRS+L+AKQEHASLL+DF+E DRTRLDLE+G GS +Q LLKE ASI+RSTG
Sbjct: 88  QDLTQEFYRLRSNLRAKQEHASLLDDFKELDRTRLDLEEGGGSEQQNLLKERASISRSTG 147

Query: 68  QMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILAL 127
           QMD+VISQAQATLGALVFQRSTFGGINSKLSNVSSRLP+VN ILS+IKRKKSMDTIILAL
Sbjct: 148 QMDTVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPTVNTILSAIKRKKSMDTIILAL 207

Query: 128 VASVCTFLIFIYWVT 142
           V SVC FLIFIYW+T
Sbjct: 208 VGSVCVFLIFIYWLT 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508504|gb|AFK42318.1| unknown [Lotus japonicus]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/137 (80%), Positives = 124/137 (90%)

Query: 7   VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRST 66
           +Q +  EFYRLRSSL+AKQEHASLLEDF+EFDRTRLDLE G GS + ALLKE ASI+R+T
Sbjct: 80  LQDITQEFYRLRSSLRAKQEHASLLEDFKEFDRTRLDLETGAGSEQHALLKERASISRNT 139

Query: 67  GQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126
           G +D+VISQAQATLGALVFQRSTFGGINSK+SNVS RLP+VN IL +IKRKKSMDTIIL+
Sbjct: 140 GHVDTVISQAQATLGALVFQRSTFGGINSKISNVSGRLPTVNSILGAIKRKKSMDTIILS 199

Query: 127 LVASVCTFLIFIYWVTK 143
           LVASVC FLIFIYW+TK
Sbjct: 200 LVASVCIFLIFIYWLTK 216

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2036194	223	GOS11 "AT1G15880" [Arabidopsis	0.951	0.609	0.832	9.9e-55
ZFIN|ZDB-GENE-050417-133	250	gosr1 "golgi SNAP receptor com	0.923	0.528	0.305	1.2e-12
UNIPROTKB|E2R812	250	GOSR1 "Golgi SNAP receptor com	0.923	0.528	0.305	2.4e-12
UNIPROTKB|E9PCW1	248	GOSR1 "Golgi SNAP receptor com	0.923	0.532	0.298	2.4e-12
UNIPROTKB|G5E9T8	255	GOSR1 "Golgi SNAP receptor com	0.923	0.517	0.298	2.4e-12
UNIPROTKB|J3KST5	185	GOSR1 "Golgi SNAP receptor com	0.923	0.713	0.298	2.4e-12
UNIPROTKB|O95249	250	GOSR1 "Golgi SNAP receptor com	0.923	0.528	0.298	2.4e-12
UNIPROTKB|O08522	250	GOSR1 "Golgi SNAP receptor com	0.923	0.528	0.298	2.4e-12
MGI|MGI:1858260	250	Gosr1 "golgi SNAP receptor com	0.923	0.528	0.298	2.4e-12
RGD|71093	250	Gosr1 "golgi SNAP receptor com	0.923	0.528	0.298	2.4e-12

TAIR|locus:2036194 GOS11 "AT1G15880" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 114/137 (83%), Positives = 125/137 (91%)

Query:     7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRST 66
             +Q L  EFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS EQAL+KEH  INR+T
Sbjct:    88 LQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGS-EQALIKEHMGINRNT 146

Query:    67 GQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126
              QMD VISQAQATLG LVFQRSTFGGINSKLSNV+SRLP+VN IL++IKRKKSMDTIIL+
Sbjct:   147 AQMDGVISQAQATLGTLVFQRSTFGGINSKLSNVASRLPTVNTILAAIKRKKSMDTIILS 206

Query:   127 LVASVCTFLIFIYWVTK 143
             LVA+VCTFLIFIYW+TK
Sbjct:   207 LVAAVCTFLIFIYWITK 223

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;IPI

GO:0016021 "integral to membrane" evidence=TAS

GO:0000149 "SNARE binding" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA;TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

ZFIN|ZDB-GENE-050417-133 gosr1 "golgi SNAP receptor complex member 1" [Danio rerio (taxid:7955)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 41/134 (30%), Positives = 68/134 (50%)

Query:     7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRS 65
             +Q    EF++ +S+  A +E   LL   R+ D        GV +    L LKEH  +  S
Sbjct:   115 LQDYTHEFHKTKSNFMAIREREDLLGSVRK-DIETYKSGSGVNNRRTELFLKEHEHLRNS 173

Query:    66 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 125
                +D  IS A AT   +  QR     I S+++ +++R P++N ++  I  +K  D++IL
Sbjct:   174 DRLIDDTISIAMATKENMTSQRGLLKSIQSRVNTLANRFPAINNLIQRINLRKRRDSLIL 233

Query:   126 ALVASVCTFLIFIY 139
               V  +CT L+ +Y
Sbjct:   234 GGVIGICTILLLLY 247

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E2R812 GOSR1 "Golgi SNAP receptor complex member 1" [Canis lupus familiaris (taxid:9615)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 41/134 (30%), Positives = 69/134 (51%)

Query:     7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRS 65
             +Q    EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S
Sbjct:   115 LQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNS 173

Query:    66 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 125
                ++  IS A AT   +  QR     I SK++ +++R P+VN ++  I  +K  D++IL
Sbjct:   174 DRLIEETISIAMATKENMTSQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLIL 233

Query:   126 ALVASVCTFLIFIY 139
               V  VCT L+ +Y
Sbjct:   234 GGVIGVCTILLLLY 247

GO:0000139 "Golgi membrane" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

UNIPROTKB|E9PCW1 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 40/134 (29%), Positives = 70/134 (52%)

Query:     7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRS 65
             +Q    EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S
Sbjct:   113 LQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNS 171

Query:    66 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 125
                ++  IS A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL
Sbjct:   172 DRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLIL 231

Query:   126 ALVASVCTFLIFIY 139
               V  +CT L+ +Y
Sbjct:   232 GGVIGICTILLLLY 245

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|G5E9T8 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 40/134 (29%), Positives = 70/134 (52%)

Query:     7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRS 65
             +Q    EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S
Sbjct:   120 LQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNS 178

Query:    66 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 125
                ++  IS A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL
Sbjct:   179 DRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLIL 238

Query:   126 ALVASVCTFLIFIY 139
               V  +CT L+ +Y
Sbjct:   239 GGVIGICTILLLLY 252

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J3KST5 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 40/134 (29%), Positives = 70/134 (52%)

Query:     7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRS 65
             +Q    EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S
Sbjct:    50 LQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNS 108

Query:    66 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 125
                ++  IS A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL
Sbjct:   109 DRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLIL 168

Query:   126 ALVASVCTFLIFIY 139
               V  +CT L+ +Y
Sbjct:   169 GGVIGICTILLLLY 182

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O95249 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 40/134 (29%), Positives = 70/134 (52%)

Query:     7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRS 65
             +Q    EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S
Sbjct:   115 LQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNS 173

Query:    66 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 125
                ++  IS A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL
Sbjct:   174 DRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLIL 233

Query:   126 ALVASVCTFLIFIY 139
               V  +CT L+ +Y
Sbjct:   234 GGVIGICTILLLLY 247

GO:0015031 "protein transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0031201 "SNARE complex" evidence=TAS

GO:0005484 "SNAP receptor activity" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

UNIPROTKB|O08522 GOSR1 "Golgi SNAP receptor complex member 1" [Cricetulus griseus (taxid:10029)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 40/134 (29%), Positives = 70/134 (52%)

Query:     7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRS 65
             +Q    EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S
Sbjct:   115 LQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNS 173

Query:    66 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 125
                ++  IS A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL
Sbjct:   174 DRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLIL 233

Query:   126 ALVASVCTFLIFIY 139
               V  +CT L+ +Y
Sbjct:   234 GGVIGICTILLLLY 247

GO:0000138 "Golgi trans cisterna" evidence=IDA

GO:0005484 "SNAP receptor activity" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IDA

MGI|MGI:1858260 Gosr1 "golgi SNAP receptor complex member 1" [Mus musculus (taxid:10090)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 40/134 (29%), Positives = 70/134 (52%)

Query:     7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRS 65
             +Q    EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S
Sbjct:   115 LQDYTHEFHKTKANFTAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNS 173

Query:    66 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 125
                ++  IS A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL
Sbjct:   174 DRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLIL 233

Query:   126 ALVASVCTFLIFIY 139
               V  +CT L+ +Y
Sbjct:   234 GGVIGICTILLLLY 247

GO:0000139 "Golgi membrane" evidence=ISO;IDA

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005801 "cis-Golgi network" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

RGD|71093 Gosr1 "golgi SNAP receptor complex member 1" [Rattus norvegicus (taxid:10116)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 40/134 (29%), Positives = 70/134 (52%)

Query:     7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRS 65
             +Q    EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S
Sbjct:   115 LQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNS 173

Query:    66 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 125
                ++  IS A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL
Sbjct:   174 DRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLIL 233

Query:   126 ALVASVCTFLIFIY 139
               V  +CT L+ +Y
Sbjct:   234 GGVIGICTILLLLY 247

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0005484 "SNAP receptor activity" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005801 "cis-Golgi network" evidence=IDA;TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LMP7	GOS11_ARATH	No assigned EC number	0.8321	0.9510	0.6098	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_I7426 hypothetical protein (226 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
pfam12352	66	pfam12352, V-SNARE_C, Snare region anchored in the	3e-17

>gnl|CDD|152787 pfam12352, V-SNARE_C, Snare region anchored in the vesicle membrane C-terminus

 Score = 70.3 bits (173), Expect = 3e-17
 Identities = 24/66 (36%), Positives = 31/66 (46%)

Query: 53  QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILS 112
           + LL+EH  +  S    D  IS  QA L  L  QR T     +KL N  +RL   N  L 
Sbjct: 1   ERLLREHDRLKNSHRIADETISIGQAILEDLHSQRETLKRARNKLHNTDNRLGKSNSTLR 60

Query: 113 SIKRKK 118
            I R++
Sbjct: 61  LINRRR 66

Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	100.0
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	99.92
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	99.88
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	99.71
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	99.26
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	97.28
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	97.04
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	96.45
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	96.36
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	95.19
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	95.13
PF04210	70	MtrG: Tetrahydromethanopterin S-methyltransferase,	94.64
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	94.52
COG4064	75	MtrG Tetrahydromethanopterin S-methyltransferase,	93.45
TIGR01149	70	mtrG N5-methyltetrahydromethanopterin:coenzyme M m	92.88
PRK01026	77	tetrahydromethanopterin S-methyltransferase subuni	92.84
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	92.56
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	91.89
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	91.43
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	90.77
KOG2678	244	consensus Predicted membrane protein [Function unk	89.28
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	88.67
PRK10884	206	SH3 domain-containing protein; Provisional	87.04
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	86.31
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	85.08
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	84.44
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	83.42
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	82.94
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	81.72

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.7e-36  Score=226.63  Aligned_cols=139  Identities=44%  Similarity=0.616  Sum_probs=126.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHH
Q 032306            2 AYVFNVQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLG   81 (143)
Q Consensus         2 ryr~~L~~~~~ef~r~~~~~~~~~~R~~Ll~~~~~~~~~~~~~~~~~~~~~~~ll~e~~~L~~S~~~~d~~~~~g~~~~~   81 (143)
                      |+||+|++|.+||+++++++.+.++|+.|++++..+. ...+..++ ..+.+++++|+++|++|.+.+|+++++|++|++
T Consensus        93 RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~-~~~~~~~~-~~~~e~~lkE~~~in~s~~~vde~Is~A~aTre  170 (231)
T KOG3208|consen   93 RHREILQDYTQEFRRIRSNIDAKRERESLLESVRADI-SSYPSASG-FNRGEMYLKEHDHINNSIRLVDELISQAQATRE  170 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCccCC-CchHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999887532 22233333 234478999999999999999999999999999


Q ss_pred             HHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHc
Q 032306           82 ALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVT  142 (143)
Q Consensus        82 ~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~~~  142 (143)
                      +|..||..|+++++|+.++++.+|.+|++|.+|++|++||.+|+++||++|++|++||||.
T Consensus       171 ~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~~  231 (231)
T KOG3208|consen  171 NLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWIN  231 (231)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999984

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.4e-23  Score=159.76  Aligned_cols=113  Identities=26%  Similarity=0.298  Sum_probs=93.5

Q ss_pred             HHHHHHHhcccccccccccccccCCCCCHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhc
Q 032306           23 AKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSS  102 (143)
Q Consensus        23 ~~~~R~~Ll~~~~~~~~~~~~~~~~~~~~~~~ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~  102 (143)
                      +.++|++||.+..+++++.      ..-+.|.++++++.|.+|++++|+++++|++++++|.+||.+|+++++|++++++
T Consensus        98 ~~~er~~lL~~~~~~~~~~------~~~~~D~el~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~n  171 (213)
T KOG3251|consen   98 QARERVELLDRRFTNGATG------TSIPFDEELQENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILN  171 (213)
T ss_pred             HHHHHHHHhcCCCCCCCcc------CCCcchHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3557899996532221111      1223578999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHH
Q 032306          103 RLPSVNQILSSIKRKKSMDTIILALVAS-VCTFLIFIYWV  141 (143)
Q Consensus       103 ~l~~s~~ll~~I~rR~~~d~~Il~~vi~-~~i~~~l~y~~  141 (143)
                      ++|.||++|+.|+||.+.|++|++|+++ +|++|+++|.|
T Consensus       172 tLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~w  211 (213)
T KOG3251|consen  172 TLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLFYRW  211 (213)
T ss_pred             hcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988766 55555555554

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.2e-21  Score=148.97  Aligned_cols=135  Identities=16%  Similarity=0.264  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcccccccccccccccCCCCCHHHHHHHH-------hhHHHhhHHH
Q 032306            3 YVFNVQSLGTEFYRLRSSLKAKQ-------EHASLLEDFREFDRTRLDLEDGVGSPEQALLKE-------HASINRSTGQ   68 (143)
Q Consensus         3 yr~~L~~~~~ef~r~~~~~~~~~-------~R~~Ll~~~~~~~~~~~~~~~~~~~~~~~ll~e-------~~~L~~S~~~   68 (143)
                      |...|++|++|.++++..++...       +|+++++...+. +..  .+   .+++++|++.       +++|..|++.
T Consensus        70 ~~~KlR~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~ad-d~~--~~---~dQR~rLl~nTerLeRst~rl~ds~Ri  143 (220)
T KOG1666|consen   70 YLSKLREYKSDLKKLKRELKRTTSRNLNAGDRDELLEALEAD-DQN--IS---ADQRARLLQNTERLERSTDRLKDSQRI  143 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHhhhhcc-ccc--cc---hhHHHHHHhhhHHHHHhHHHHHHHHHH
Confidence            66778888888888777776533       566666543321 100  11   2344455554       4566777788


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHcC
Q 032306           69 MDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK  143 (143)
Q Consensus        69 ~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~~~k  143 (143)
                      +.+++++|.+|+++|++||++|.+++.++++++.++|.|+++++.|.||..+++|+++++|++.++++++.+|+|
T Consensus       144 a~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~k  218 (220)
T KOG1666|consen  144 ALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSK  218 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999998888888887776

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=99.71  E-value=4.9e-17  Score=103.64  Aligned_cols=66  Identities=35%  Similarity=0.481  Sum_probs=63.7

Q ss_pred             HHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhh
Q 032306           53 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK  118 (143)
Q Consensus        53 ~~ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~  118 (143)
                      ++|++|+++|++|++++++++++|.+|+++|..||++|+++++|+.++.+++|.|+++|+.|.+|+
T Consensus         1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~   66 (66)
T PF12352_consen    1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK   66 (66)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence            478999999999999999999999999999999999999999999999999999999999999985

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=99.26  E-value=1e-10  Score=79.20  Aligned_cols=83  Identities=18%  Similarity=0.274  Sum_probs=74.4

Q ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 032306           59 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFI  138 (143)
Q Consensus        59 ~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~  138 (143)
                      +++|.++++++.+.++++..+++.|.+|.++|+.+++...++...+..+.++++.++++...|++|++++++++++.++|
T Consensus         7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~y   86 (92)
T PF03908_consen    7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLY   86 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999998776654444444


Q ss_pred             HHH
Q 032306          139 YWV  141 (143)
Q Consensus       139 y~~  141 (143)
                      ++|
T Consensus        87 I~~   89 (92)
T PF03908_consen   87 ILW   89 (92)
T ss_pred             Hhh
Confidence            443

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.005  Score=49.52  Aligned_cols=81  Identities=7%  Similarity=0.132  Sum_probs=64.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306           61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYW  140 (143)
Q Consensus        61 ~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~  140 (143)
                      .+++-...+-|+=++=.+.-....+|.|+++++-+-|.+++-.++.+.+.|-+-=.|...++|++.=+.+++++|+++||
T Consensus       228 ~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfv  307 (311)
T KOG0812|consen  228 TMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFV  307 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            44444444555545555566677899999999999999999999999999999999999999999888877766666666


Q ss_pred             H
Q 032306          141 V  141 (143)
Q Consensus       141 ~  141 (143)
                      +
T Consensus       308 l  308 (311)
T KOG0812|consen  308 L  308 (311)
T ss_pred             H
Confidence            5

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=97.04  E-value=0.018  Score=38.17  Aligned_cols=64  Identities=13%  Similarity=0.176  Sum_probs=36.2

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhH
Q 032306           60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI  123 (143)
Q Consensus        60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~  123 (143)
                      +.+..-...++++-+.-.+..+.+-+-.+.|.....|-.++...-..-.+--+.+.++..-.++
T Consensus         3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~   66 (89)
T PF00957_consen    3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNY   66 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666666666666666666666666555555444444444444444443333

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.45  E-value=0.071  Score=37.53  Aligned_cols=84  Identities=14%  Similarity=0.287  Sum_probs=57.8

Q ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhc---cCc-hHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 032306           59 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSS---RLP-SVNQILSSIKRKKSMDTIILALVASVCTF  134 (143)
Q Consensus        59 ~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~---~l~-~s~~ll~~I~rR~~~d~~Il~~vi~~~i~  134 (143)
                      ++++++....+|++.++=.+-.+..-+=-+.|....+|-..+..   .|- .+.++=+.+=.+..+-.+|++.|++++++
T Consensus        28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~  107 (116)
T KOG0860|consen   28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV  107 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788888888888877777666666666666666666544443   332 33455556667778888888888887777


Q ss_pred             HHHHHHHc
Q 032306          135 LIFIYWVT  142 (143)
Q Consensus       135 ~~l~y~~~  142 (143)
                      ++++|+|.
T Consensus       108 iiii~~~~  115 (116)
T KOG0860|consen  108 VIIIYIFL  115 (116)
T ss_pred             HHHHHHhc
Confidence            77777764

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.033  Score=39.16  Aligned_cols=86  Identities=9%  Similarity=0.136  Sum_probs=50.3

Q ss_pred             HHHHHHhhH-HHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhh--hHHHHHHH
Q 032306           53 QALLKEHAS-INRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMD--TIILALVA  129 (143)
Q Consensus        53 ~~ll~e~~~-L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d--~~Il~~vi  129 (143)
                      +.+-.|++. ++.=..-+-.+-+-...|-.+...|+..|.+..+-+..+..-+   ..++.++..=.++.  ++..|-.+
T Consensus        28 ~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L---~gtm~r~~~~ar~sg~~l~~~m~~  104 (118)
T KOG3385|consen   28 ASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFL---SGTMGRLKTMARRSGISLLCWMAV  104 (118)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHH---HHHHHHHHHHHhcCCcchHHHHHH
Confidence            334355553 3333444555666778888889999999999888776665544   44555554444444  34444334


Q ss_pred             HHHHHHHHHHHH
Q 032306          130 SVCTFLIFIYWV  141 (143)
Q Consensus       130 ~~~i~~~l~y~~  141 (143)
                      ++++.|+++|||
T Consensus       105 f~lV~~fi~~~~  116 (118)
T KOG3385|consen  105 FSLVAFFILWVW  116 (118)
T ss_pred             HHHHHHHHhhee
Confidence            444444444444

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.19  E-value=0.38  Score=37.93  Aligned_cols=70  Identities=20%  Similarity=0.249  Sum_probs=57.2

Q ss_pred             HHHHHHh-hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhh
Q 032306           53 QALLKEH-ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT  122 (143)
Q Consensus        53 ~~ll~e~-~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~  122 (143)
                      ..+++|+ +.|+.-+..+-.+-++|..+-+.|..|...|-.--.=|-.+.+.+....+-+..+.+......
T Consensus       144 qqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~  214 (235)
T KOG3202|consen  144 QQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCS  214 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            4566666 488888888889999999999999999999998888888888888888888888888444433

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=95.13  E-value=0.24  Score=39.04  Aligned_cols=87  Identities=14%  Similarity=0.105  Sum_probs=55.7

Q ss_pred             HHHHHHhhHHHhhHHHHHHH-------HHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHH
Q 032306           53 QALLKEHASINRSTGQMDSV-------ISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL  125 (143)
Q Consensus        53 ~~ll~e~~~L~~S~~~~d~~-------~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il  125 (143)
                      +..++.+..++..  .++++       =+.+...-..|.+...+|..+...+..-...+...+.=+....++...  |++
T Consensus       155 e~~l~~~~~~QE~--L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~  230 (251)
T PF09753_consen  155 EKILQHHRNLQED--LTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CWT  230 (251)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHH
Confidence            4555555544432  33343       445555667788888888888888888888888888777777654444  444


Q ss_pred             HHH-HHHHHHHHHHHHHcC
Q 032306          126 ALV-ASVCTFLIFIYWVTK  143 (143)
Q Consensus       126 ~~v-i~~~i~~~l~y~~~k  143 (143)
                      +.+ +++|++|+++|+|-|
T Consensus       231 ~~~i~~v~~~Fi~mvl~ir  249 (251)
T PF09753_consen  231 WLMIFVVIIVFIMMVLFIR  249 (251)
T ss_pred             HHHHHHHHHHHHHHHHHhe
Confidence            443 446666777776644

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea

Probab=94.64  E-value=0.16  Score=32.56  Aligned_cols=53  Identities=19%  Similarity=0.211  Sum_probs=37.0

Q ss_pred             HhhHHhhHHHhhccCchHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHc
Q 032306           90 FGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLIFIYWVT  142 (143)
Q Consensus        90 l~~~~~kl~~~~~~l~~s~-~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~~~  142 (143)
                      +..+.+|+..+..++-..+ .+.+++.++.-||-=|+||+++.+++++++..++
T Consensus        14 ~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~   67 (70)
T PF04210_consen   14 FNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLS   67 (70)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555554443 4667888999999999999988777776666554

This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=94.52  E-value=0.83  Score=30.05  Aligned_cols=65  Identities=11%  Similarity=0.219  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306           69 MDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYW  140 (143)
Q Consensus        69 ~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~  140 (143)
                      +|.+++.| +-+++|..+-+.|...-..+..      .+..+=+.+-.+..+=.+|+++++++++++++++.
T Consensus        23 i~~ll~Rg-e~L~~L~~kt~~L~~~a~~F~k------~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~   87 (89)
T PF00957_consen   23 IDKLLERG-EKLEELEDKTEELSDNAKQFKK------NAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVI   87 (89)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcC-chHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHH
Confidence            44556565 5667777777777666555553      44666677788888888888877776666655543

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]

Probab=93.45  E-value=0.31  Score=31.25  Aligned_cols=44  Identities=20%  Similarity=0.261  Sum_probs=26.1

Q ss_pred             HHhhHHHhhccCchHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 032306           93 INSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLI  136 (143)
Q Consensus        93 ~~~kl~~~~~~l~~s~-~ll~~I~rR~~~d~~Il~~vi~~~i~~~  136 (143)
                      +++|+.++...+...| .+-++|.++.-||--|+||.++.+++++
T Consensus        20 ~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~   64 (75)
T COG4064          20 IHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCM   64 (75)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            3334444443333332 4567788999999999988655433333

>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G

Probab=92.88  E-value=0.55  Score=30.06  Aligned_cols=51  Identities=18%  Similarity=0.253  Sum_probs=33.7

Q ss_pred             HhhHHhhHHHhhccCchHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306           90 FGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLIFIYW  140 (143)
Q Consensus        90 l~~~~~kl~~~~~~l~~s~-~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~  140 (143)
                      ++.+.+|+..+..++-..| .+.+++.++.-||-=|+||+++.+++++++..
T Consensus        14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~~~   65 (70)
T TIGR01149        14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIYIL   65 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555444 46678888999999999998776555554443

coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.

>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional

Probab=92.84  E-value=0.53  Score=30.77  Aligned_cols=50  Identities=20%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             HhhHHhhHHHhhccCchHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 032306           90 FGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLIFIY  139 (143)
Q Consensus        90 l~~~~~kl~~~~~~l~~s~-~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y  139 (143)
                      ++.+++|+.++..++-..| .+.+++.++.-||-=|+||+++.+++++++.
T Consensus        17 ~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i~~   67 (77)
T PRK01026         17 FKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLVYI   67 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555444443 4667788889999999999877655555443

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.56  E-value=0.45  Score=38.28  Aligned_cols=56  Identities=18%  Similarity=0.174  Sum_probs=49.3

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHH
Q 032306           60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK  115 (143)
Q Consensus        60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~  115 (143)
                      ++-.++...+.+....|..|+..|..|++.|.++...+-.+...+-...+.+..++
T Consensus        79 ~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~  134 (273)
T KOG3065|consen   79 KSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK  134 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            45566777888899999999999999999999999999999999888888877765

>smart00397 t_SNARE Helical region found in SNAREs

Probab=91.89  E-value=1.5  Score=26.29  Aligned_cols=55  Identities=9%  Similarity=0.062  Sum_probs=46.8

Q ss_pred             HHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHH
Q 032306           55 LLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ  109 (143)
Q Consensus        55 ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~  109 (143)
                      +......|.+....+.++.+++..+-..+..|++.|.++...+..+...+.....
T Consensus         7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~   61 (66)
T smart00397        7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANK   61 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3455568999999999999999999999999999999999999888877655543

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=91.43  E-value=2.1  Score=26.00  Aligned_cols=59  Identities=10%  Similarity=0.094  Sum_probs=49.8

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhh
Q 032306           60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK  118 (143)
Q Consensus        60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~  118 (143)
                      +.|..-...+.++-+++..+-..+..|.+.|.++...+..+...+...+.=+....+++
T Consensus         4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~   62 (63)
T PF05739_consen    4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46777778888899999999999999999999999999999988887777666665543

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.77  E-value=6.5  Score=30.60  Aligned_cols=17  Identities=29%  Similarity=0.403  Sum_probs=15.7

Q ss_pred             hHHHHHHHHHHHHHHHH
Q 032306            3 YVFNVQSLGTEFYRLRS   19 (143)
Q Consensus         3 yr~~L~~~~~ef~r~~~   19 (143)
                      |+..|.+++.|++++.+
T Consensus        77 yksdl~~l~~e~k~~~~   93 (220)
T KOG1666|consen   77 YKSDLKKLKRELKRTTS   93 (220)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            89999999999999883

>KOG2678 consensus Predicted membrane protein [Function unknown]

Probab=89.28  E-value=6.8  Score=30.78  Aligned_cols=70  Identities=14%  Similarity=0.130  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 032306           72 VISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWV  141 (143)
Q Consensus        72 ~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~~  141 (143)
                      +-..+.+.-..|.+-++++..+-.-+..-...++..+.=+.+=...+.-+++-++.+|++|+.|+..+++
T Consensus       167 lKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMili  236 (244)
T KOG2678|consen  167 LKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMILI  236 (244)
T ss_pred             HHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3345556666788888888887766666666777777766666666666666666677777777766554

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=88.67  E-value=4.9  Score=31.90  Aligned_cols=79  Identities=10%  Similarity=0.114  Sum_probs=50.6

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhh----ccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 032306           61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVS----SRLPSVNQILSSIKRKKSMDTIILALVASVCTFLI  136 (143)
Q Consensus        61 ~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~----~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~  136 (143)
                      -|..-..++-++-+-=..+-+...+|-+....+.+-+.+.-    .-.+-.++-+.. -|..++.+|+.+|+++++++++
T Consensus       186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~vi  264 (280)
T COG5074         186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIIIVI  264 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHHHH
Confidence            34444455555555555555566778888877777776544    445556667777 6777788888887766655555


Q ss_pred             HHHH
Q 032306          137 FIYW  140 (143)
Q Consensus       137 l~y~  140 (143)
                      ++++
T Consensus       265 v~vv  268 (280)
T COG5074         265 VVVV  268 (280)
T ss_pred             HHHH
Confidence            5544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.04  E-value=12  Score=28.82  Aligned_cols=51  Identities=12%  Similarity=0.102  Sum_probs=27.3

Q ss_pred             HHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHH
Q 032306           78 ATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASV  131 (143)
Q Consensus        78 ~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~  131 (143)
                      ....+|.++++.|+.   .+...-+.+.....-+....+....+.++.||++++
T Consensus       132 ~~~~~L~~~n~~L~~---~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~  182 (206)
T PRK10884        132 SVINGLKEENQKLKN---QLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAG  182 (206)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHH
Confidence            333445555555533   233333334444555566666667777777776663

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=86.31  E-value=2.9  Score=25.96  Aligned_cols=30  Identities=3%  Similarity=-0.026  Sum_probs=18.3

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 032306          109 QILSSIKRKKSMDTIILALVASVCTFLIFI  138 (143)
Q Consensus       109 ~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~  138 (143)
                      ....+-.+|.++-++|++++++++++++++
T Consensus        26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~   55 (59)
T PF09889_consen   26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIF   55 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666677788888776654444333

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=85.08  E-value=15  Score=29.77  Aligned_cols=80  Identities=13%  Similarity=0.111  Sum_probs=52.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 032306           61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ-ILSSIKRKKSMDTIILALVASVCTFLIFIY  139 (143)
Q Consensus        61 ~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~-ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y  139 (143)
                      .+.+-++.+.|+-++=.+.-.-..+|.+...++---+.++...+-..++ +.......+++.++-++..+.+|++.+++.
T Consensus       196 eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv~  275 (283)
T COG5325         196 EIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLFVS  275 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHHHH
Confidence            4555555566665555555555678898888888888888776655554 555555566667887777777666655544


Q ss_pred             H
Q 032306          140 W  140 (143)
Q Consensus       140 ~  140 (143)
                      +
T Consensus       276 l  276 (283)
T COG5325         276 L  276 (283)
T ss_pred             H
Confidence            3

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.44  E-value=13  Score=30.62  Aligned_cols=74  Identities=15%  Similarity=0.136  Sum_probs=51.8

Q ss_pred             HHHHHhhHHHhhHHHH-HHH----------HHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhh
Q 032306           54 ALLKEHASINRSTGQM-DSV----------ISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT  122 (143)
Q Consensus        54 ~ll~e~~~L~~S~~~~-d~~----------~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~  122 (143)
                      .+-.|+.+|.+--+.+ |++          ...=.-.-+.+-.|-+-+..+++=..++...+..+|.=|+++.+...+.+
T Consensus       215 ~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r  294 (316)
T KOG3894|consen  215 LLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLR  294 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccch
Confidence            3447777776655533 322          22222344567788899999999999999999999999999988877764


Q ss_pred             -HHHHH
Q 032306          123 -IILAL  127 (143)
Q Consensus       123 -~Il~~  127 (143)
                       |++++
T Consensus       295 ~~~lf~  300 (316)
T KOG3894|consen  295 VFLLFF  300 (316)
T ss_pred             hHHHHH
Confidence             44444

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=83.42  E-value=0.51  Score=27.05  Aligned_cols=16  Identities=13%  Similarity=0.289  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHc
Q 032306          127 LVASVCTFLIFIYWVT  142 (143)
Q Consensus       127 ~vi~~~i~~~l~y~~~  142 (143)
                      ++|++++++++++||+
T Consensus        22 ~vI~~vl~~~l~~~~r   37 (40)
T PF08693_consen   22 GVIIIVLGAFLFFWYR   37 (40)
T ss_pred             HHHHHHHHHHhheEEe
Confidence            4455555454554544

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.94  E-value=24  Score=28.77  Aligned_cols=59  Identities=12%  Similarity=0.171  Sum_probs=35.0

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCch-HHHHHHHHHHhhhhhh
Q 032306           61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPS-VNQILSSIKRKKSMDT  122 (143)
Q Consensus        61 ~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~-s~~ll~~I~rR~~~d~  122 (143)
                      .|++|.+.+.++   =..+-.--..|.+.+.++-.-+.+....+.. ...|=..+...++-.|
T Consensus       210 ~LEksi~ELhql---FlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK  269 (297)
T KOG0810|consen  210 KLEKSIRELHQL---FLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARK  269 (297)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            444444444443   2222233468999999999999998887776 4444444443333333

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.72  E-value=18  Score=29.48  Aligned_cols=59  Identities=12%  Similarity=0.181  Sum_probs=39.6

Q ss_pred             HHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHH
Q 032306           81 GALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL-ALVASVCTFLIFIY  139 (143)
Q Consensus        81 ~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il-~~vi~~~i~~~l~y  139 (143)
                      .....|.-.+-++-=-+.++.-++....+=+.++++..++++-.. +++.++|+|++++.
T Consensus       239 ~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii~llvl  298 (305)
T KOG0809|consen  239 ALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLIIALLVL  298 (305)
T ss_pred             HHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHHHHHHH
Confidence            344578877777777777777788888888999999888875444 33333444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 22/178 (12%), Positives = 56/178 (31%), Gaps = 59/178 (33%)

Query: 23  AKQEHA--SLLEDFRE-----FD-RTRLDLEDGVGSPEQA--LLKEHASINRSTGQMDSV 72
            + ++    +L  F +     FD +   D+   + S E+   ++    +++ +     ++
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 73  ISQAQATLGALV------------------------------FQRSTFGGINSKLS--NV 100
           +S+ +  +   V                               QR      N   +  NV
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 101 SSRLPSVNQILSSIKRKKSMDTIIL---------ALVASVC------TFLIF-IYWVT 142
            SRL    ++  ++   +    +++          +   VC        + F I+W+ 
Sbjct: 132 -SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
2nps_C	81	Vesicle transport through interaction with T- snar	99.38
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	99.2
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	98.67
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	98.35
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	97.52
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	97.13
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	96.48
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	93.52
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	93.45
2l34_A	33	TYRO protein tyrosine kinase-binding protein; immu	91.86
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	86.52
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	86.18
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	85.16
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	84.88
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	84.61
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	82.42

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.38  E-value=1.8e-12  Score=85.12  Aligned_cols=70  Identities=14%  Similarity=0.172  Sum_probs=65.2

Q ss_pred             HHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhh
Q 032306           53 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT  122 (143)
Q Consensus        53 ~~ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~  122 (143)
                      +.|-+..++|++|.+.+.|++++|.+|+++|..||++|.++++++.++++.+..|.++|+.|.+|..+||
T Consensus        12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK   81 (81)
T 2nps_C           12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR   81 (81)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence            5677788899999999999999999999999999999999999999999999999999999999998875

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=99.20  E-value=1.9e-11  Score=77.03  Aligned_cols=63  Identities=24%  Similarity=0.259  Sum_probs=56.5

Q ss_pred             HHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHH
Q 032306           54 ALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR  116 (143)
Q Consensus        54 ~ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~r  116 (143)
                      .|-+..++|++|.+.+.+++++|.+|+++|..||++|.++++++.+++..+..+.++|+.|.|
T Consensus         3 rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R   65 (65)
T 1gl2_C            3 HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR   65 (65)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence            344677899999999999999999999999999999999999999999999999999998864

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=98.67  E-value=9.2e-08  Score=62.20  Aligned_cols=61  Identities=11%  Similarity=0.102  Sum_probs=57.3

Q ss_pred             HHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHH
Q 032306           55 LLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK  115 (143)
Q Consensus        55 ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~  115 (143)
                      +-+..+++++|.+++.++.+.|.+|+.+|..|+++|.+++++|.++.+.+..+.++|+.|.
T Consensus        18 ~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~   78 (79)
T 1n7s_C           18 ADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence            3455689999999999999999999999999999999999999999999999999999886

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=98.35  E-value=6.8e-07  Score=53.95  Aligned_cols=51  Identities=16%  Similarity=0.188  Sum_probs=48.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHH
Q 032306           63 NRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSS  113 (143)
Q Consensus        63 ~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~  113 (143)
                      ++|.+.+.++.+.|.+|++.|..|++.|.++++.|.++.+.+..+.++++.
T Consensus         3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~   53 (54)
T 1nhl_A            3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTE   53 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhc
Confidence            578899999999999999999999999999999999999999999988864

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=97.52  E-value=0.00041  Score=43.81  Aligned_cols=57  Identities=16%  Similarity=0.213  Sum_probs=52.5

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHH
Q 032306           60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR  116 (143)
Q Consensus        60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~r  116 (143)
                      ++-+++.+++.+..+.|.+|+..|..|.+.|.++...|-.+...+..+..-+..++.
T Consensus        12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~   68 (70)
T 3b5n_C           12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            567888899999999999999999999999999999999999999999988888764

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=97.13  E-value=0.00026  Score=46.17  Aligned_cols=55  Identities=16%  Similarity=0.157  Sum_probs=47.8

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHH
Q 032306           60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI  114 (143)
Q Consensus        60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I  114 (143)
                      ++-+++.+++.+..+.|..|+..|..|++.|.++...|-.|.+.+..+.+.++.+
T Consensus        27 ~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L   81 (83)
T 1l4a_C           27 ESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGM   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5778888899999999999999999999999999999999998887776655544

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=96.48  E-value=0.031  Score=36.67  Aligned_cols=78  Identities=12%  Similarity=0.261  Sum_probs=37.6

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhcc---Cc-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 032306           60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSR---LP-SVNQILSSIKRKKSMDTIILALVASVCTFL  135 (143)
Q Consensus        60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~---l~-~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~  135 (143)
                      +.|......+||+-++-.+..+.+-+-.+.|....+|-.++.+.   +- .+..+=+.+-.+..+=.+|+++++++++++
T Consensus         5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~i   84 (91)
T 3hd7_A            5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILII   84 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555544444444444444444444443333321   11 334455556666666666666555444444


Q ss_pred             HH
Q 032306          136 IF  137 (143)
Q Consensus       136 ~l  137 (143)
                      ++
T Consensus        85 i~   86 (91)
T 3hd7_A           85 II   86 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=93.52  E-value=1.1  Score=30.02  Aligned_cols=57  Identities=7%  Similarity=-0.020  Sum_probs=44.3

Q ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHH
Q 032306           59 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK  115 (143)
Q Consensus        59 ~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~  115 (143)
                      ++.+.+-.+.+.++-++-.+.-.-...|.+.+.++-.-+.++...+...+.=+..-.
T Consensus        20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~   76 (109)
T 3hd7_B           20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV   76 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666777777777777889999999999999999998888877775553

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=93.45  E-value=0.044  Score=37.73  Aligned_cols=79  Identities=9%  Similarity=0.224  Sum_probs=48.9

Q ss_pred             HHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHH----HHHHHHHhhhhhhHHHHHHHHHH
Q 032306           57 KEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ----ILSSIKRKKSMDTIILALVASVC  132 (143)
Q Consensus        57 ~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~----ll~~I~rR~~~d~~Il~~vi~~~  132 (143)
                      .+.+.|......+|++-++-.+..+.+-+-.+.|....+|-.++...-..-.+    +-+++-.+..+=.+|++++++++
T Consensus        30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~ii  109 (119)
T 2kog_A           30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII  109 (119)
T ss_dssp             SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888888999998888888888888888887776666555543333333    33333333344444444444433


Q ss_pred             HHH
Q 032306          133 TFL  135 (143)
Q Consensus       133 i~~  135 (143)
                      +++
T Consensus       110 i~i  112 (119)
T 2kog_A          110 LII  112 (119)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B

Probab=91.86  E-value=0.22  Score=26.60  Aligned_cols=21  Identities=10%  Similarity=0.352  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHcC
Q 032306          123 IILALVASVCTFLIFIYWVTK  143 (143)
Q Consensus       123 ~Il~~vi~~~i~~~l~y~~~k  143 (143)
                      ++++.++++.++.+++|||+|
T Consensus        12 IVvgdi~~t~~i~~~vy~~~r   32 (33)
T 2l34_A           12 IVVGDLVLTVLIALAVYFLGR   32 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC
T ss_pred             EeHHHHHHHHHHHHHHhheec
Confidence            456667777778888888886

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=86.52  E-value=2.1  Score=25.67  Aligned_cols=52  Identities=12%  Similarity=0.111  Sum_probs=42.9

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHH
Q 032306           60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL  111 (143)
Q Consensus        60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll  111 (143)
                      +.|+.-+..+..+=++|..+-+++..|+..|..+..++-.+...+...++=+
T Consensus         9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl   60 (65)
T 1gl2_D            9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRV   60 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777888888899999999999999999999999888877666555443

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=86.18  E-value=3  Score=25.04  Aligned_cols=54  Identities=15%  Similarity=0.162  Sum_probs=44.0

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHH
Q 032306           60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSS  113 (143)
Q Consensus        60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~  113 (143)
                      +.|..-...+..+-++|..+-.+|..|+..|..+..++-.+...+...++=+.+
T Consensus        10 ~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~   63 (66)
T 1n7s_D           10 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK   63 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            456677777888888999999999999999999999998888877766554443

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=85.16  E-value=2.5  Score=25.58  Aligned_cols=50  Identities=12%  Similarity=0.080  Sum_probs=41.4

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHH
Q 032306           61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQI  110 (143)
Q Consensus        61 ~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~l  110 (143)
                      .|..-...+-.+-.+|.++-..+..|++.|..+..|+-.+...+..-+.=
T Consensus        11 nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~R   60 (64)
T 3b5n_D           11 NLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNR   60 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777888888999999999999999999999998887766555443

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=84.88  E-value=4  Score=25.67  Aligned_cols=59  Identities=19%  Similarity=0.244  Sum_probs=50.3

Q ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHh
Q 032306           59 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRK  117 (143)
Q Consensus        59 ~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR  117 (143)
                      -+.|+.-...+..+=++|..|-++|..|+..|..+...+-.+...+...++=+..+.++
T Consensus        18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~   76 (82)
T 2nps_D           18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM   76 (82)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788888888899999999999999999999999999999888887777666666554

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=84.61  E-value=2.6  Score=26.95  Aligned_cols=61  Identities=16%  Similarity=0.160  Sum_probs=49.8

Q ss_pred             HHHHHh-hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHH
Q 032306           54 ALLKEH-ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI  114 (143)
Q Consensus        54 ~ll~e~-~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I  114 (143)
                      .+.+|. +.|+.-...+..+-++|..+-.+|..|+..|..+..++-.+...+...+.=+..+
T Consensus        22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l   83 (87)
T 1sfc_D           22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM   83 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            444443 5788888888999999999999999999999999999998888877766655544

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=82.42  E-value=2.6  Score=27.03  Aligned_cols=56  Identities=13%  Similarity=0.141  Sum_probs=47.8

Q ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHH
Q 032306           59 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI  114 (143)
Q Consensus        59 ~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I  114 (143)
                      -+.|+.-...+..+-++|..+-.+|..|+..|..+..++-.+...+...+.=+..+
T Consensus        29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl   84 (87)
T 1l4a_D           29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL   84 (87)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35777888888889999999999999999999999999999988888777655543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00