Citrus Sinensis ID: 032331

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGELRPEVW
Secondary Structure (PSIPRED)
cHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEcccEcccccccccccccccccccc
Coil and Loop (DISEMBL)
mteamirkkpgmasvkdmpvlqdgpppggfapvryarriptkgpSAMALFLAAFGAFSygmyqvgkGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMkdvpgwkvgenvynsgrwmppasgelrpevw
Flexible Loop (DISEMBL)
mteamirkkpgmasvkdmpvlqdgppPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAIlpmlqaeedeRFVKEWKKYLEYEAevmkdvpgwkvgenvynsgrwmppasgelrpevw
Low Complexity Region (SEG)
MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSamalflaafgafSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGELRPEVW
Disordered region (IsUnstruct)
********************************VRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRW*************
Disordered Region (DISOPRED)
***************K*****QDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASG*LRPEVW
Disordered Region (DISEMBL)
**********GMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPAS********
Disordered Region (DISPRO)
*TEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGELRPEVW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
O49313	143	NADH dehydrogenase [ubiqu	yes	no	1.0	1.0	0.888	1e-70
Q8RWA7	143	NADH dehydrogenase [ubiqu	yes	no	1.0	1.0	0.881	3e-70
Q0MQ90	144	NADH dehydrogenase [ubiqu	yes	no	0.832	0.826	0.470	4e-27
Q9P0J0	144	NADH dehydrogenase [ubiqu	yes	no	0.832	0.826	0.470	4e-27
Q0MQ89	144	NADH dehydrogenase [ubiqu	N/A	no	0.832	0.826	0.470	4e-27
Q95KV7	144	NADH dehydrogenase [ubiqu	yes	no	0.832	0.826	0.470	1e-26
Q4R6H1	163	NADH dehydrogenase [ubiqu	N/A	no	0.881	0.773	0.444	1e-26
Q0MQ88	144	NADH dehydrogenase [ubiqu	N/A	no	0.832	0.826	0.462	6e-26
Q9ERS2	144	NADH dehydrogenase [ubiqu	yes	no	0.832	0.826	0.445	3e-25
Q86IZ2	113	NADH dehydrogenase [ubiqu	yes	no	0.664	0.840	0.330	1e-06

>sp|O49313|NDADB_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis thaliana GN=At2g33220 PE=2 SV=1

 Score =  264 bits (675), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/143 (88%), Positives = 136/143 (95%)

Query: 1   MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60
           MTEAMIRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMA+FL   GAF++G
Sbjct: 1   MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARRAILP+LQAEEDERFV EWKKYLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GENVYNSGRWMPPASGELRPEVW 143
           GENVYNSGRWMPPA+GELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWA7|NDADA_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A OS=Arabidopsis thaliana GN=MEE4 PE=2 SV=1

 Score =  263 bits (671), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/143 (88%), Positives = 135/143 (94%)

Query: 1   MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60
           MTEAMIR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMA+FLA  GAF++G
Sbjct: 1   MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARR ILP+LQAEEDERFV EWKKYLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GENVYNSGRWMPPASGELRPEVW 143
           GENVYNSGRWMPPA+GELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0MQ90|NDUAD_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pan troglodytes GN=NDUFA13 PE=2 SV=3

 Score =  120 bits (300), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 79/119 (66%)

Query: 20  VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79
           V QD PPPGG+ P+ Y R +P +G S  ++     G   YG + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query: 80  AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
            AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct: 66  EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|Q9P0J0|NDUAD_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN=NDUFA13 PE=1 SV=3

 Score =  120 bits (300), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 79/119 (66%)

Query: 20  VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79
           V QD PPPGG+ P+ Y R +P +G S  ++     G   YG + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query: 80  AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
            AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct: 66  EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Involved in the interferon/all-trans-retinoic acid (IFN/RA) induced cell death. This apoptotic activity is inhibited by interaction with viral IRF1. Prevents the transactivation of STAT3 target genes. May play a role in CARD15-mediated innate mucosal responses and serve to regulate intestinal epithelial cell responses to microbes.

Homo sapiens (taxid: 9606)

>sp|Q0MQ89|NDUAD_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 PE=2 SV=3

 Score =  120 bits (300), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 79/119 (66%)

Query: 20  VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79
           V QD PPPGG+ P+ Y R +P +G S  ++     G   YG + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query: 80  AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
            AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct: 66  EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q95KV7|NDUAD_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=NDUFA13 PE=1 SV=3

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 81/119 (68%)

Query: 20  VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79
           V QD PP GG+ P+ Y R +P +G S  ++F    GA  +G + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERRRLQIEDF 65

Query: 80  AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
            AR A++P+LQAE+D R ++  ++ LE EA VMKDVPGWKVGE+V+++ RW+ P  GEL
Sbjct: 66  EARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTRWVTPMMGEL 124

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Involved in the interferon/all-trans-retinoic acid (IFN/RA) cell death pathway. May play a role in CARD15-mediated innate mucosal responses and serve to regulate intestinal epithelial cell responses to microbes.

Bos taurus (taxid: 9913)

>sp|Q4R6H1|NDUAD_MACFA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Macaca fascicularis GN=NDUFA13 PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 82/126 (65%)

Query: 13  ASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRR 72
           AS++   V QD PPPGG+ P+ Y R +P +G S  ++     G   YG + + K N+ RR
Sbjct: 18  ASMEMPKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLVYGHWSIMKWNRERR 77

Query: 73  ALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMP 132
            L+ E + AR A++P+ QAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+P
Sbjct: 78  RLQIEDFEARIALMPLFQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVP 137

Query: 133 PASGEL 138
           P  GEL
Sbjct: 138 PLIGEL 143

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Macaca fascicularis (taxid: 9541)

>sp|Q0MQ88|NDUAD_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 78/119 (65%)

Query: 20  VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79
           V QD PPPGG+ P+ Y R +P +G S  ++     G   YG + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLALGIGTLIYGHWSMMKWNRERRRLQIEDF 65

Query: 80  AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
            AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+ P  GEL
Sbjct: 66  EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVAPLIGEL 124

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|Q9ERS2|NDUAD_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Mus musculus GN=Ndufa13 PE=1 SV=3

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 80/119 (67%)

Query: 20  VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79
           V QD PPPGG+ P+ Y R +P +G S  ++F    GA  +G +++ + N+ RR L  E  
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGALIFGYWRMMRWNQERRRLLIEDL 65

Query: 80  AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
            AR A++P+ QAE+D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GE+
Sbjct: 66  EARIALMPLFQAEKDRRTLQILRENLEEEAIIMKDVPNWKVGESVFHTTRWVPPLIGEM 124

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Involved in the interferon/all-trans-retinoic acid (IFN/RA) cell death pathway. May play a role in CARD15-mediated innate mucosal responses and serve to regulate intestinal epithelial cell responses to microbes.

Mus musculus (taxid: 10090)

>sp|Q86IZ2|NDUAD_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Dictyostelium discoideum GN=ndufa13 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 23/118 (19%)

Query: 21  LQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYA 80
           +QD PP GGF  ++YAR   +  P A  +F   F   + G Y +   +K+ R  +EE+  
Sbjct: 9   VQDLPPAGGFPKLKYARTSTSPIPGAY-IFAGVFSIMAVGTY-IFFSDKVERNAREEEEK 66

Query: 81  ARRA-ILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGE 137
            R + ILP+LQAE D  F+                       +NVY + RWMPP +G+
Sbjct: 67  RRLSMILPILQAENDINFLAS-------------------PHQNVYFT-RWMPPQTGK 104

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Dictyostelium discoideum (taxid: 44689)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2046575	143	AT2G33220 "AT2G33220" [Arabido	1.0	1.0	0.832	3.3e-63
TAIR|locus:2197833	143	MEE4 "AT1G04630" [Arabidopsis	1.0	1.0	0.818	3e-62
UNIPROTKB|Q9P0J0	144	NDUFA13 "NADH dehydrogenase [u	0.832	0.826	0.462	7.6e-25
UNIPROTKB|Q0MQ89	144	NDUFA13 "NADH dehydrogenase [u	0.832	0.826	0.462	7.6e-25
UNIPROTKB|Q0MQ90	144	NDUFA13 "NADH dehydrogenase [u	0.832	0.826	0.462	7.6e-25
UNIPROTKB|Q4R6H1	163	NDUFA13 "NADH dehydrogenase [u	0.853	0.748	0.447	9.7e-25
UNIPROTKB|F1P909	146	NDUFA13 "Uncharacterized prote	0.881	0.863	0.428	4.2e-24
UNIPROTKB|Q95KV7	144	NDUFA13 "NADH dehydrogenase [u	0.832	0.826	0.445	8.7e-24
UNIPROTKB|Q0MQ88	144	NDUFA13 "NADH dehydrogenase [u	0.832	0.826	0.453	8.7e-24
UNIPROTKB|F1S6Q1	144	NDUFA13 "Uncharacterized prote	0.832	0.826	0.428	2.9e-23

TAIR|locus:2046575 AT2G33220 "AT2G33220" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 119/143 (83%), Positives = 127/143 (88%)

Query:     1 MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYG 60
             MTEAMIRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPS            ++G
Sbjct:     1 MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query:    61 MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120
             MYQVG+GNKIRRALKEEKYAARRAILP+LQAEEDERFV EWKKYLEYEA+VMKDVPGWKV
Sbjct:    61 MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query:   121 GENVYNSGRWMPPASGELRPEVW 143
             GENVYNSGRWMPPA+GELRP+VW
Sbjct:   121 GENVYNSGRWMPPATGELRPDVW 143

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

TAIR|locus:2197833 MEE4 "AT1G04630" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 117/143 (81%), Positives = 125/143 (87%)

Query:     1 MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYG 60
             MTEAMIR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPS            ++G
Sbjct:     1 MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query:    61 MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120
             MYQVG+GNKIRRALKEEKYAARR ILP+LQAEEDERFV EWKKYLEYEA+VMKDVPGWKV
Sbjct:    61 MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query:   121 GENVYNSGRWMPPASGELRPEVW 143
             GENVYNSGRWMPPA+GELRP+VW
Sbjct:   121 GENVYNSGRWMPPATGELRPDVW 143

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009853 "photorespiration" evidence=TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

UNIPROTKB|Q9P0J0 NDUFA13 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 55/119 (46%), Positives = 76/119 (63%)

Query:    20 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKY 79
             V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E +
Sbjct:     6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query:    80 AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
              AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:    66 EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0030308 "negative regulation of cell growth" evidence=IMP;IDA

GO:0030262 "apoptotic nuclear changes" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0097190 "apoptotic signaling pathway" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=NAS

GO:0005524 "ATP binding" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IDA

GO:0005746 "mitochondrial respiratory chain" evidence=IDA

GO:0017148 "negative regulation of translation" evidence=IDA

GO:0003954 "NADH dehydrogenase activity" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q0MQ89 NDUFA13 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 55/119 (46%), Positives = 76/119 (63%)

Query:    20 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKY 79
             V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E +
Sbjct:     6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query:    80 AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
              AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:    66 EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005746 "mitochondrial respiratory chain" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0017148 "negative regulation of translation" evidence=ISS

GO:0030262 "apoptotic nuclear changes" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0097190 "apoptotic signaling pathway" evidence=ISS

UNIPROTKB|Q0MQ90 NDUFA13 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13" [Pan troglodytes (taxid:9598)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 55/119 (46%), Positives = 76/119 (63%)

Query:    20 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKY 79
             V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E +
Sbjct:     6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query:    80 AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
              AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:    66 EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005746 "mitochondrial respiratory chain" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0017148 "negative regulation of translation" evidence=ISS

GO:0030262 "apoptotic nuclear changes" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0097190 "apoptotic signaling pathway" evidence=ISS

UNIPROTKB|Q4R6H1 NDUFA13 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13" [Macaca fascicularis (taxid:9541)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 55/123 (44%), Positives = 78/123 (63%)

Query:    17 DMP-VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALK 75
             +MP V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+
Sbjct:    21 EMPKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLVYGHWSIMKWNRERRRLQ 80

Query:    76 EEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPAS 135
              E + AR A++P+ QAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  
Sbjct:    81 IEDFEARIALMPLFQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLI 140

Query:   136 GEL 138
             GEL
Sbjct:   141 GEL 143

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005746 "mitochondrial respiratory chain" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0017148 "negative regulation of translation" evidence=ISS

GO:0030262 "apoptotic nuclear changes" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0097190 "apoptotic signaling pathway" evidence=ISS

UNIPROTKB|F1P909 NDUFA13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:    13 ASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRR 72
             AS+    V QD PPPGG+ P+ Y R +P +G S             +G + + K N+ RR
Sbjct:     1 ASMAASKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGTLLFGYWSMMKWNRERR 60

Query:    73 ALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMP 132
              L+ E + AR A++P+LQAE+D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+ 
Sbjct:    61 RLQIEDFEARIALMPLLQAEKDRRVLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVT 120

Query:   133 PASGEL 138
             P  GEL
Sbjct:   121 PMMGEL 126

GO:0006915 "apoptotic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q95KV7 NDUFA13 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13" [Bos taurus (taxid:9913)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 53/119 (44%), Positives = 76/119 (63%)

Query:    20 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKY 79
             V QD PP GG+ P+ Y R +P +G S             +G + + K N+ RR L+ E +
Sbjct:     6 VKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERRRLQIEDF 65

Query:    80 AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
              AR A++P+LQAE+D R ++  ++ LE EA VMKDVPGWKVGE+V+++ RW+ P  GEL
Sbjct:    66 EARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTRWVTPMMGEL 124

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0005746 "mitochondrial respiratory chain" evidence=IDA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005654 "nucleoplasm" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0097190 "apoptotic signaling pathway" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0030262 "apoptotic nuclear changes" evidence=ISS

GO:0022900 "electron transport chain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q0MQ88 NDUFA13 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13" [Pongo pygmaeus (taxid:9600)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 54/119 (45%), Positives = 75/119 (63%)

Query:    20 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKY 79
             V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E +
Sbjct:     6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLALGIGTLIYGHWSMMKWNRERRRLQIEDF 65

Query:    80 AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
              AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+ P  GEL
Sbjct:    66 EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVAPLIGEL 124

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005746 "mitochondrial respiratory chain" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0017148 "negative regulation of translation" evidence=ISS

GO:0030262 "apoptotic nuclear changes" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0097190 "apoptotic signaling pathway" evidence=ISS

UNIPROTKB|F1S6Q1 NDUFA13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 51/119 (42%), Positives = 75/119 (63%)

Query:    20 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKY 79
             V QD PPPGG+ P+ Y R +P +G S             +G + + K N+ RR L+ E +
Sbjct:     6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGTLLFGYWSMMKWNRERRRLQIEDF 65

Query:    80 AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
              AR A++P+ QAE+D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+ P  GEL
Sbjct:    66 EARIALMPLFQAEKDRRVLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVTPMMGEL 124

GO:0006915 "apoptotic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q95KV7	NDUAD_BOVIN	No assigned EC number	0.4705	0.8321	0.8263	yes	no
O49313	NDADB_ARATH	No assigned EC number	0.8881	1.0	1.0	yes	no
Q8RWA7	NDADA_ARATH	No assigned EC number	0.8811	1.0	1.0	yes	no
Q9P0J0	NDUAD_HUMAN	No assigned EC number	0.4705	0.8321	0.8263	yes	no
Q0MQ90	NDUAD_PANTR	No assigned EC number	0.4705	0.8321	0.8263	yes	no
Q9ERS2	NDUAD_MOUSE	No assigned EC number	0.4453	0.8321	0.8263	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00010448	hypothetical protein (143 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0635000201	hypothetical protein (190 aa)				•		•	•		0.501

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
pfam06212	130	pfam06212, GRIM-19, GRIM-19 protein	8e-58

>gnl|CDD|148050 pfam06212, GRIM-19, GRIM-19 protein

 Score =  175 bits (446), Expect = 8e-58
 Identities = 59/123 (47%), Positives = 81/123 (65%)

Query: 16  KDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALK 75
              PV QD PPPGG+ P+ + R +P  G S  A+F    GA ++G Y+  + NK RR L+
Sbjct: 1   AASPVKQDMPPPGGYGPIPFKRNLPKTGFSGYAMFATGAGATAFGYYRYYEWNKERRRLE 60

Query: 76  EEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPAS 135
            E  +AR AILP+LQAE D R++K+ ++  E EAE+MKDVPGWKVGE V+ + RW+ P+ 
Sbjct: 61  IEDRSARNAILPLLQAERDRRYLKQLRRNREEEAELMKDVPGWKVGEPVFKTDRWVTPSF 120

Query: 136 GEL 138
            E 
Sbjct: 121 QEF 123

This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-# and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PF06212	130	GRIM-19: GRIM-19 protein; InterPro: IPR009346 This	100.0
KOG3300	146	consensus NADH:ubiquinone oxidoreductase, B16.6 su	100.0
PF10883	87	DUF2681: Protein of unknown function (DUF2681); In	82.64
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	82.08
PF14880	59	COX14: Cytochrome oxidase c assembly	80.92

>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins

Probab=100.00  E-value=5.4e-64  Score=381.85  Aligned_cols=124  Identities=56%  Similarity=1.010  Sum_probs=121.9

Q ss_pred             CCCCCcccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhH
Q 032331           16 KDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDE   95 (143)
Q Consensus        16 ~~~~~~QDmPP~GGY~pi~ykR~lP~rg~sg~~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~~ar~al~PlLqAE~DR   95 (143)
                      ||+|++|||||+|||+||+|+||+|+|||||+++|++++++|+||||+++++|++++++++|++++|+||+||||||+||
T Consensus         1 ~~~~~~QDmPP~GGY~pv~y~R~~p~rg~sg~~~~~~~~~~~~~G~y~~~~~~r~~r~~~~E~~~ar~al~PlLqAE~DR   80 (130)
T PF06212_consen    1 KAMPYKQDMPPPGGYPPVQYKRNLPKRGPSGWTMFAGGAGIMAYGFYKVGQGNRERRELKREKRWARIALLPLLQAEEDR   80 (130)
T ss_pred             CCCcccCCCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHhccCCCCcccccccccCCCccCCCCCCCC
Q 032331           96 RFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGELR  139 (143)
Q Consensus        96 ~~lr~~~~~~e~E~eiMkdVpGWkvGe~vY~t~rw~~P~~~el~  139 (143)
                      ++|+++++|+++|++||||||||||||||||||+|++|+++|+.
T Consensus        81 ~~lr~~~~~~~~E~~lMkdVpgW~vGe~vY~t~r~~~P~~~e~y  124 (130)
T PF06212_consen   81 RYLRRLKANREEEAELMKDVPGWKVGEPVYNTDRWVPPTFDEYY  124 (130)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCcCCCCcccCCcccCCcHHHHH
Confidence            99999999999999999999999999999999999999999864

GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].

>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16

Probab=100.00  E-value=1e-60  Score=365.70  Aligned_cols=128  Identities=71%  Similarity=1.177  Sum_probs=126.9

Q ss_pred             ccccCCCCCcccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 032331           12 MASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQA   91 (143)
Q Consensus        12 m~s~~~~~~~QDmPP~GGY~pi~ykR~lP~rg~sg~~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~~ar~al~PlLqA   91 (143)
                      |+||+++|++|||||||||.||+|+|++|++|+||.++|++++|+++||.|.++++||+++++++|+..+|++|+|+|||
T Consensus         1 ~asv~~~~~kQDmPPpGGy~~i~y~R~~pk~~~Sg~t~~aa~~gatayG~~~~~~~~kk~rr~kiEd~~a~nai~PiL~A   80 (146)
T KOG3300|consen    1 MASVKDMPLKQDMPPPGGYAPIRYARRIPKTGPSGMTMFAAVSGATAYGMYQVGQGNKKRRRLKIEDYAARNAILPILQA   80 (146)
T ss_pred             CCccCCCcccccCCCCCCcCcccccccCCccCCCcchhhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhhHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHhHHHHHHhccCCCCcccccccccCCCccCCCCCCCC
Q 032331           92 EEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGELR  139 (143)
Q Consensus        92 E~DR~~lr~~~~~~e~E~eiMkdVpGWkvGe~vY~t~rw~~P~~~el~  139 (143)
                      |+||++|+++|+|+|+|++|||||||||||||||||.+|++|++.||.
T Consensus        81 ErDr~~l~~lrkn~eeEaeiMKdVPgWkvGEpVy~Tlrwv~P~~~Ely  128 (146)
T KOG3300|consen   81 ERDRRFLSELRKNLEEEAEIMKDVPGWKVGEPVYNTLRWVPPATGELY  128 (146)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHccCCCcccCccceecceecCcchhhhh
Confidence            999999999999999999999999999999999999999999999997

6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]

>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function

Probab=82.64  E-value=4.1  Score=29.48  Aligned_cols=32  Identities=19%  Similarity=0.163  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032331           48 ALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY   79 (143)
Q Consensus        48 ~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~   79 (143)
                      .++++++++++|.+|++-+.+++...+..|..
T Consensus         9 ~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~   40 (87)
T PF10883_consen    9 GVGAVVALILAYLWWKVKKAKKQNAKLQKENE   40 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777888888777777666655543

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=82.08  E-value=11  Score=30.65  Aligned_cols=44  Identities=23%  Similarity=0.249  Sum_probs=21.5

Q ss_pred             CCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHH
Q 032331           28 GGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQV----GKGNKIRRALKE   76 (143)
Q Consensus        28 GGY~pi~ykR~lP~rg~sg~~~~~~~~~~~~~G~y~~----~~~~re~r~~~~   76 (143)
                      ||+||+++. .+|.    -..++++.++++.|-+.++    ..+.-+.|...+
T Consensus        42 ~~~p~~~~~-~~~~----~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~~~I   89 (204)
T PRK09174         42 GVFPPFDST-HYAS----QLLWLAITFGLFYLFMSRVILPRIGGIIETRRDRI   89 (204)
T ss_pred             CCCCCCcch-hccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            459999986 3443    3333334444444333333    444444444444

>PF14880 COX14: Cytochrome oxidase c assembly

Probab=80.92  E-value=6.1  Score=26.08  Aligned_cols=25  Identities=36%  Similarity=0.294  Sum_probs=17.3

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHH
Q 032331           55 GAFSYGMYQVGKGNKIRRALKEEKY   79 (143)
Q Consensus        55 ~~~~~G~y~~~~~~re~r~~~~E~~   79 (143)
                      ++++|..|.+.+.|+.+++...|+.
T Consensus        30 ~~~~~~~y~~~~~~r~~~~~~~e~~   54 (59)
T PF14880_consen   30 GLTVYTVYSYFKYNRRRRAEWIERE   54 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777888888888877555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00