Citrus Sinensis ID: 032413

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGLSKGPAYPSFI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHccccccHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccHHHHccccccccccccccHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
maaqnkishqvgefqndvfrfdihgvksdivgshpleTLCQSAKQREEEIKRRILVNtygtafpmkmdfDRQILSrfqrptgaipssmlGLEAVTgsledfgfehylndpresesfrpadlhhgmevriglskgpaypsfi
Flexible Loop (DISEMBL)
maaqnkishqvgefQNDVFRFDIHGVKsdivgshplETLCQSAKQREEEIKRRILvntygtafpmkMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEvriglskgpaypsfi
Low Complexity Region (SEG)
MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGLSKGPAYPSFI
Disordered region (IsUnstruct)
**********VGEFQNDVFRFDIHGVKSDIVGSHPLETLCQS******EIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYL**********************************
Disordered Region (DISOPRED)
***************NDVFRFDI***************LCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILS**************GLEAVTGSLEDFGFEHYLND*************HGMEVRIGLSKGPAYPS**
Disordered Region (DISEMBL)
*********QVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGLSKGPAYPSFI
Disordered Region (DISPRO)
*****KI***VGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGLSKGPAYPSF*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGLSKGPAYPSFI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q0DWQ7	391	Cyclin-B1-2 OS=Oryza sati	no	no	0.801	0.289	0.460	3e-20
Q55G18	128	Proteasome maturation pro	yes	no	0.723	0.796	0.401	1e-11
Q3SZV5	141	Proteasome maturation pro	yes	no	0.829	0.829	0.314	4e-08
Q5R9L9	141	Proteasome maturation pro	yes	no	0.794	0.794	0.304	3e-07
Q9Y244	141	Proteasome maturation pro	yes	no	0.794	0.794	0.304	3e-07
Q9CQT5	141	Proteasome maturation pro	yes	no	0.829	0.829	0.305	4e-07

>sp|Q0DWQ7|CCB12_ORYSJ Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYCB1-2 PE=3 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 71/115 (61%), Gaps = 2/115 (1%)

Query: 1   MAAQNKISHQVGEFQNDVFRFDIH-GVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTY 59
           MA+   +  ++G   +DV RF ++  VK D+   HPL+       +   + KR      Y
Sbjct: 1   MASGGVVKKEIGG-NHDVVRFGVNDSVKGDLAPPHPLQASVHKEAKFWADKKRFGAEAIY 59

Query: 60  GTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESE 114
           G+AF ++ D D QILS+FQRP GA+PSSMLG EA+TGSL+DFGFE YLN    SE
Sbjct: 60  GSAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNYAAASE 114

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q55G18|POMP_DICDI Proteasome maturation protein homolog OS=Dictyostelium discoideum GN=pomp PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 5/107 (4%)

Query: 28  SDIVG-SHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQR-PTGAIP 85
           S++ G SHP+E++     + E ++K   + N +GT   M  + ++QI S+F+R PT  + 
Sbjct: 19  SNVKGLSHPVESIQLDQGKTEIKLKNFAMKNVFGTHMVMNNEIEKQIYSQFKRLPT--LQ 76

Query: 86  SSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGLS 132
           SSM+GLE + G  EDF F  YL DP  SE+  P  LH  ME R+G++
Sbjct: 77  SSMVGLETILGLDEDFDFGDYLCDPATSEAPLPQ-LHTSMEHRLGMT 122

May function as molecular chaperone essential for the assembly of standard proteasomes and immunoproteasomes. Degraded after completion of proteasome maturation.

Dictyostelium discoideum (taxid: 44689)

>sp|Q3SZV5|POMP_BOVIN Proteasome maturation protein OS=Bos taurus GN=POMP PE=2 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 12  GEFQN-DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFD 70
           G F++ D+ R     VK++++ SHPLE   ++ +  ++++    L N  G   P+K+  +
Sbjct: 23  GPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQME 82

Query: 71  RQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIG 130
            + + + QR    +PSS L L+ + G+ E  GFE  LNDP +SE     + H  +E ++G
Sbjct: 83  FKAVQQVQR-LPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELM--GEPHLMVEYKLG 139

Query: 131 L 131
           L
Sbjct: 140 L 140

Molecular chaperone essential for the assembly of standard proteasomes and immunoproteasomes. Degraded after completion of proteasome maturation (By similarity). Mediates the association of 20S preproteasome with the endoplasmic reticulum.

Bos taurus (taxid: 9913)

>sp|Q5R9L9|POMP_PONAB Proteasome maturation protein OS=Pongo abelii GN=POMP PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 3/115 (2%)

Query: 17  DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSR 76
           D+ R     VK++++ SHPLE   ++ +  ++++    L N  G   P+K+  + + + +
Sbjct: 29  DLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQ 88

Query: 77  FQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGL 131
            QR    + SS L L+ + G+ E  GFE  LNDP +SE     + H  +E ++GL
Sbjct: 89  VQR-LPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVM--GEPHLMVEYKLGL 140

Molecular chaperone essential for the assembly of standard proteasomes and immunoproteasomes. Degraded after completion of proteasome maturation (By similarity). Mediates the association of 20S preproteasome with the endoplasmic reticulum.

Pongo abelii (taxid: 9601)

>sp|Q9Y244|POMP_HUMAN Proteasome maturation protein OS=Homo sapiens GN=POMP PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 3/115 (2%)

Query: 17  DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSR 76
           D+ R     VK++++ SHPLE   ++ +  ++++    L N  G   P+K+  + + + +
Sbjct: 29  DLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQ 88

Query: 77  FQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGL 131
            QR    + SS L L+ + G+ E  GFE  LNDP +SE     + H  +E ++GL
Sbjct: 89  VQR-LPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVM--GEPHLMVEYKLGL 140

Molecular chaperone essential for the assembly of standard proteasomes and immunoproteasomes. Degraded after completion of proteasome maturation. Mediates the association of 20S preproteasome with the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

>sp|Q9CQT5|POMP_MOUSE Proteasome maturation protein OS=Mus musculus GN=Pomp PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 4/121 (3%)

Query: 12  GEFQN-DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFD 70
           G F++ D+ R     VK++++ SHPLE   ++ +  ++++    L N  G   P+K+  +
Sbjct: 23  GPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQME 82

Query: 71  RQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIG 130
            + + +  R    +PSS L L+ + G+ E  GFE  LNDP +SE     + H  +E ++G
Sbjct: 83  FKAVQQVHR-LPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELM--GEPHVMVEHKLG 139

Query: 131 L 131
           L
Sbjct: 140 L 140

Molecular chaperone essential for the assembly of standard proteasomes and immunoproteasomes. Degraded after completion of proteasome maturation (By similarity). Mediates the association of 20S preproteasome with the endoplasmic reticulum.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
449447480	141	PREDICTED: cyclin-B1-2-like [Cucumis sat	1.0	1.0	0.687	1e-54
334188069	431	protein acclimation of photosynthesis to	1.0	0.327	0.673	3e-53
15240969	141	Proteasome maturation factor UMP1 [Arabi	1.0	1.0	0.673	5e-53
297841401	141	proteasome maturation factor UMP1 family	1.0	1.0	0.652	1e-52
255570003	142	Proteasome maturation protein, putative	0.992	0.985	0.692	1e-52
388517821	142	unknown [Lotus japonicus]	0.985	0.978	0.690	3e-52
225451958	141	PREDICTED: cyclin-B1-2 [Vitis vinifera]	1.0	1.0	0.687	1e-51
9828633	303	F1N21.7 [Arabidopsis thaliana]	1.0	0.465	0.638	1e-51
147778138	141	hypothetical protein VITISV_009153 [Viti	1.0	1.0	0.687	4e-51
18408726	141	proteasome maturation protein [Arabidops	1.0	1.0	0.631	6e-51

>gi|449447480|ref|XP_004141496.1| PREDICTED: cyclin-B1-2-like [Cucumis sativus]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 97/141 (68%), Positives = 119/141 (84%)

Query: 1   MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYG 60
           M +   I H++G  QND  RF + GVKSD+VGSHP+E+L ++ ++ +EE+KR++LVNTYG
Sbjct: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESLYETTRRTQEEMKRKVLVNTYG 60

Query: 61  TAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPAD 120
           +AFP+KMD DRQILSRFQRP G IPSSMLGLEA+TGSL+DFGFE YLNDPRESES RP D
Sbjct: 61  SAFPLKMDLDRQILSRFQRPPGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120

Query: 121 LHHGMEVRIGLSKGPAYPSFI 141
           +HHGMEVR+GLSKGP  PSF+
Sbjct: 121 MHHGMEVRLGLSKGPVCPSFM 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188069|ref|NP_001190435.1| protein acclimation of photosynthesis to environment [Arabidopsis thaliana] gi|332006963|gb|AED94346.1| protein acclimation of photosynthesis to environment [Arabidopsis thaliana]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/141 (67%), Positives = 116/141 (82%)

Query: 1   MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYG 60
           M +Q KI+H++G  +ND  RF +HGVKSDI+ SHPLET  +S KQ +EE+KRR++ +TYG
Sbjct: 291 MESQKKIAHEIGGMKNDALRFGLHGVKSDILRSHPLETAYESGKQSQEEMKRRVITHTYG 350

Query: 61  TAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPAD 120
            A P+KMD DRQILSRFQRP G IPSSMLGLE  TG+L++FGFE YLNDPRESE+ +P D
Sbjct: 351 AALPLKMDLDRQILSRFQRPPGPIPSSMLGLEVYTGALDNFGFEDYLNDPRESETLKPVD 410

Query: 121 LHHGMEVRIGLSKGPAYPSFI 141
            HHGMEVR+GLSKGPA PSF+
Sbjct: 411 FHHGMEVRLGLSKGPASPSFM 431

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240969|ref|NP_198681.1| Proteasome maturation factor UMP1 [Arabidopsis thaliana] gi|10176833|dbj|BAB10155.1| unnamed protein product [Arabidopsis thaliana] gi|19347883|gb|AAL85998.1| unknown protein [Arabidopsis thaliana] gi|21281209|gb|AAM45059.1| unknown protein [Arabidopsis thaliana] gi|21593744|gb|AAM65711.1| unknown [Arabidopsis thaliana] gi|332006964|gb|AED94347.1| Proteasome maturation factor UMP1 [Arabidopsis thaliana]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 95/141 (67%), Positives = 116/141 (82%)

Query: 1   MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYG 60
           M +Q KI+H++G  +ND  RF +HGVKSDI+ SHPLET  +S KQ +EE+KRR++ +TYG
Sbjct: 1   MESQKKIAHEIGGMKNDALRFGLHGVKSDILRSHPLETAYESGKQSQEEMKRRVITHTYG 60

Query: 61  TAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPAD 120
            A P+KMD DRQILSRFQRP G IPSSMLGLE  TG+L++FGFE YLNDPRESE+ +P D
Sbjct: 61  AALPLKMDLDRQILSRFQRPPGPIPSSMLGLEVYTGALDNFGFEDYLNDPRESETLKPVD 120

Query: 121 LHHGMEVRIGLSKGPAYPSFI 141
            HHGMEVR+GLSKGPA PSF+
Sbjct: 121 FHHGMEVRLGLSKGPASPSFM 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841401|ref|XP_002888582.1| proteasome maturation factor UMP1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297334423|gb|EFH64841.1| proteasome maturation factor UMP1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 92/141 (65%), Positives = 117/141 (82%)

Query: 1   MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYG 60
           M +Q KI+H++G  +ND  RF +HGVKSDI+GSHPLE+  +S K+ +EE+KR ++ + YG
Sbjct: 1   MESQKKIAHEIGGVKNDALRFGLHGVKSDIIGSHPLESSYESEKKSKEELKRTVIAHAYG 60

Query: 61  TAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPAD 120
           TA P+KMD DRQILSRFQRP G IPSSMLGLE  TG+++DFGFE YLNDPR+SE+F+P D
Sbjct: 61  TALPLKMDMDRQILSRFQRPPGPIPSSMLGLEVYTGAVDDFGFEDYLNDPRDSETFKPVD 120

Query: 121 LHHGMEVRIGLSKGPAYPSFI 141
            HHGMEVR+G+SKGP YPSF+
Sbjct: 121 FHHGMEVRLGISKGPVYPSFM 141

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570003|ref|XP_002525964.1| Proteasome maturation protein, putative [Ricinus communis] gi|223534696|gb|EEF36388.1| Proteasome maturation protein, putative [Ricinus communis]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 117/140 (83%)

Query: 2   AAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGT 61
           A++  ISH+ G  QND  RF +HGVKSDI+ SHPLE+  QSA++ +EE++ +IL NTYG+
Sbjct: 3   ASKTTISHETGGIQNDALRFGLHGVKSDILESHPLESAYQSARKTQEEMRTKILGNTYGS 62

Query: 62  AFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADL 121
           AFP+KMDF+RQILSRFQRP G IPSSMLGLEA+TGSL+DFGFE YLNDPRESE+ R  D+
Sbjct: 63  AFPLKMDFERQILSRFQRPPGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESETIRTPDM 122

Query: 122 HHGMEVRIGLSKGPAYPSFI 141
           HH MEVR+GLSKGP  PSFI
Sbjct: 123 HHAMEVRVGLSKGPVCPSFI 142

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517821|gb|AFK46972.1| unknown [Lotus japonicus]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/139 (69%), Positives = 114/139 (82%)

Query: 3   AQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTA 62
           A   I+HQ+G  QND  RF + GVKSDIVGSHPL++  +SA +  E +KR+ +VN YG A
Sbjct: 4   AAKSIAHQIGGIQNDALRFGLQGVKSDIVGSHPLQSAQESASKINEVMKRQCMVNLYGAA 63

Query: 63  FPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLH 122
           FP+KMD DRQILSRFQRP+GAIPSSMLGLEA TGSL+DFGFE YL+DPRESE+ RP D+H
Sbjct: 64  FPLKMDLDRQILSRFQRPSGAIPSSMLGLEAFTGSLDDFGFEDYLSDPRESETIRPLDMH 123

Query: 123 HGMEVRIGLSKGPAYPSFI 141
           HGMEVR+GLSKGP  PSF+
Sbjct: 124 HGMEVRLGLSKGPVCPSFM 142

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451958|ref|XP_002283197.1| PREDICTED: cyclin-B1-2 [Vitis vinifera] gi|298204380|emb|CBI16860.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/141 (68%), Positives = 117/141 (82%)

Query: 1   MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYG 60
           M A   I+H++G  +ND  RF + GVKSDIVGSHPLE+  QS ++ +E +KR+IL NTYG
Sbjct: 1   MEAPKTIAHEIGGVRNDALRFGLQGVKSDIVGSHPLESAYQSQREIQEGMKRKILANTYG 60

Query: 61  TAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPAD 120
           TAFP+KMD D QILSRFQRP GAIPSSMLGLEA+TGSL++FGFE YL+DP +SE+FRPAD
Sbjct: 61  TAFPLKMDLDAQILSRFQRPPGAIPSSMLGLEALTGSLDNFGFEDYLSDPCDSETFRPAD 120

Query: 121 LHHGMEVRIGLSKGPAYPSFI 141
           +HHGMEVR G+SKGP  PSFI
Sbjct: 121 MHHGMEVRHGISKGPICPSFI 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9828633|gb|AAG00256.1|AC002130_21 F1N21.7 [Arabidopsis thaliana]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 116/141 (82%)

Query: 1   MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYG 60
           M ++ KI+H++G  +ND  RF +HGVKS+I+GSHPLE+  +S K+ +E +KR ++ + YG
Sbjct: 1   MESEKKIAHEIGGVKNDALRFGLHGVKSNIIGSHPLESSYESEKKSKEALKRTVIAHAYG 60

Query: 61  TAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPAD 120
           TA P+KMD DRQILSRFQRP G IPSSMLGLE  TG+++DFGFE YLNDPR+SE+F+P D
Sbjct: 61  TALPLKMDMDRQILSRFQRPPGPIPSSMLGLEVYTGAVDDFGFEDYLNDPRDSETFKPVD 120

Query: 121 LHHGMEVRIGLSKGPAYPSFI 141
            HHGMEVR+G+SKGP YPSFI
Sbjct: 121 FHHGMEVRLGISKGPIYPSFI 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778138|emb|CAN69726.1| hypothetical protein VITISV_009153 [Vitis vinifera]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 97/141 (68%), Positives = 114/141 (80%)

Query: 1   MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYG 60
           M A   I+H++G  +ND  RF + GVKSDIVGSHPLE+  QS ++ +E +KR IL NTYG
Sbjct: 1   MEAPKTIAHEIGGVRNDALRFGLQGVKSDIVGSHPLESAYQSQREIQEGMKRXILANTYG 60

Query: 61  TAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPAD 120
           TAFP+KMD D QILSRFQRP GAIPSSMLGLEA+TGSL++FGFE YL DP +SE FRPAD
Sbjct: 61  TAFPLKMDLDAQILSRFQRPPGAIPSSMLGLEALTGSLDNFGFEDYLXDPCDSEXFRPAD 120

Query: 121 LHHGMEVRIGLSKGPAYPSFI 141
           +HHGMEVR G+SKGP  PSFI
Sbjct: 121 MHHGMEVRXGISKGPICPSFI 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408726|ref|NP_564892.1| proteasome maturation protein [Arabidopsis thaliana] gi|14994239|gb|AAK73254.1| Unknown protein [Arabidopsis thaliana] gi|21555316|gb|AAM63832.1| unknown [Arabidopsis thaliana] gi|26449510|dbj|BAC41881.1| unknown protein [Arabidopsis thaliana] gi|28372850|gb|AAO39907.1| At1g67250 [Arabidopsis thaliana] gi|332196495|gb|AEE34616.1| proteasome maturation protein [Arabidopsis thaliana]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 116/141 (82%)

Query: 1   MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYG 60
           M ++ KI+H++G  +ND  RF +HGVKS+I+GSHPLE+  +S K+ +E +KR ++ + YG
Sbjct: 1   MESEKKIAHEIGGVKNDALRFGLHGVKSNIIGSHPLESSYESEKKSKEALKRTVIAHAYG 60

Query: 61  TAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPAD 120
           TA P+KMD DRQILSRFQRP G IPSSMLGLE  TG+++DFGFE YLNDPR+SE+F+P D
Sbjct: 61  TALPLKMDMDRQILSRFQRPPGPIPSSMLGLEVYTGAVDDFGFEDYLNDPRDSETFKPVD 120

Query: 121 LHHGMEVRIGLSKGPAYPSFI 141
            HHGMEVR+G+SKGP YPSF+
Sbjct: 121 FHHGMEVRLGISKGPIYPSFM 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2159878	141	AT5G38650 "AT5G38650" [Arabido	1.0	1.0	0.673	1.1e-50
TAIR|locus:2019599	141	AT1G67250 "AT1G67250" [Arabido	1.0	1.0	0.631	3.2e-49
DICTYBASE|DDB_G0267866	128	DDB_G0267866 "proteasome matur	0.723	0.796	0.401	1.6e-13
RGD|1305831	141	Pomp "proteasome maturation pr	0.829	0.829	0.314	1.5e-10
UNIPROTKB|Q3SZV5	141	POMP "Proteasome maturation pr	0.829	0.829	0.314	2e-10
ZFIN|ZDB-GENE-040801-10	142	pomp "proteasome maturation pr	0.843	0.838	0.308	6.6e-10
UNIPROTKB|Q9Y244	141	POMP "Proteasome maturation pr	0.829	0.829	0.305	1.1e-09
MGI|MGI:1913787	141	Pomp "proteasome maturation pr	0.829	0.829	0.305	1.1e-09
TAIR|locus:2015559	260	AT1G62920 "AT1G62920" [Arabido	0.234	0.126	0.617	1.8e-09
UNIPROTKB|F1NP84	157	F1NP84 "Uncharacterized protei	0.836	0.751	0.295	1.6e-08

TAIR|locus:2159878 AT5G38650 "AT5G38650" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 95/141 (67%), Positives = 116/141 (82%)

Query:     1 MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYG 60
             M +Q KI+H++G  +ND  RF +HGVKSDI+ SHPLET  +S KQ +EE+KRR++ +TYG
Sbjct:     1 MESQKKIAHEIGGMKNDALRFGLHGVKSDILRSHPLETAYESGKQSQEEMKRRVITHTYG 60

Query:    61 TAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPAD 120
              A P+KMD DRQILSRFQRP G IPSSMLGLE  TG+L++FGFE YLNDPRESE+ +P D
Sbjct:    61 AALPLKMDLDRQILSRFQRPPGPIPSSMLGLEVYTGALDNFGFEDYLNDPRESETLKPVD 120

Query:   121 LHHGMEVRIGLSKGPAYPSFI 141
              HHGMEVR+GLSKGPA PSF+
Sbjct:   121 FHHGMEVRLGLSKGPASPSFM 141

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019599 AT1G67250 "AT1G67250" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 89/141 (63%), Positives = 116/141 (82%)

Query:     1 MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYG 60
             M ++ KI+H++G  +ND  RF +HGVKS+I+GSHPLE+  +S K+ +E +KR ++ + YG
Sbjct:     1 MESEKKIAHEIGGVKNDALRFGLHGVKSNIIGSHPLESSYESEKKSKEALKRTVIAHAYG 60

Query:    61 TAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPAD 120
             TA P+KMD DRQILSRFQRP G IPSSMLGLE  TG+++DFGFE YLNDPR+SE+F+P D
Sbjct:    61 TALPLKMDMDRQILSRFQRPPGPIPSSMLGLEVYTGAVDDFGFEDYLNDPRDSETFKPVD 120

Query:   121 LHHGMEVRIGLSKGPAYPSFI 141
              HHGMEVR+G+SKGP YPSF+
Sbjct:   121 FHHGMEVRLGISKGPIYPSFM 141

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0267866 DDB_G0267866 "proteasome maturation factor UMP1 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 43/107 (40%), Positives = 65/107 (60%)

Query:    28 SDIVG-SHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQR-PTGAIP 85
             S++ G SHP+E++     + E ++K   + N +GT   M  + ++QI S+F+R PT  + 
Sbjct:    19 SNVKGLSHPVESIQLDQGKTEIKLKNFAMKNVFGTHMVMNNEIEKQIYSQFKRLPT--LQ 76

Query:    86 SSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGLS 132
             SSM+GLE + G  EDF F  YL DP  SE+  P  LH  ME R+G++
Sbjct:    77 SSMVGLETILGLDEDFDFGDYLCDPATSEAPLP-QLHTSMEHRLGMT 122

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

RGD|1305831 Pomp "proteasome maturation protein" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 38/121 (31%), Positives = 67/121 (55%)

Query:    12 GEFQN-DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFD 70
             G F++ D+ R     VK++++ SHPLE   ++ +  ++++    L N  G   P+K+  +
Sbjct:    23 GPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQME 82

Query:    71 RQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIG 130
              + + + QR    +PSS L L+ + G+ E  GFE  LNDP +SE     + H  +E ++G
Sbjct:    83 FKAVQQVQR-LPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELM--GEPHMMVEYKLG 139

Query:   131 L 131
             L
Sbjct:   140 L 140

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0043248 "proteasome assembly" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q3SZV5 POMP "Proteasome maturation protein" [Bos taurus (taxid:9913)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 38/121 (31%), Positives = 67/121 (55%)

Query:    12 GEFQN-DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFD 70
             G F++ D+ R     VK++++ SHPLE   ++ +  ++++    L N  G   P+K+  +
Sbjct:    23 GPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQME 82

Query:    71 RQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIG 130
              + + + QR    +PSS L L+ + G+ E  GFE  LNDP +SE     + H  +E ++G
Sbjct:    83 FKAVQQVQR-LPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELM--GEPHLMVEYKLG 139

Query:   131 L 131
             L
Sbjct:   140 L 140

GO:0031090 "organelle membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

ZFIN|ZDB-GENE-040801-10 pomp "proteasome maturation protein" [Danio rerio (taxid:7955)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 38/123 (30%), Positives = 62/123 (50%)

Query:    10 QVGEFQ-NDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMD 68
             Q G +   D  R     VK++++ SHPLE   ++ +  ++++    L N  G   P+K+ 
Sbjct:    22 QAGPYGVQDSLRRGFSSVKNELLPSHPLELSEKNFQLNQDKMNFNTLRNIQGLHAPLKLQ 81

Query:    69 FDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVR 128
              + +   + QR    +PSS L L+ + GS +  GFE  LNDP + E     D H   E +
Sbjct:    82 MEYRAAKQIQR-LPFLPSSNLALDTLRGSDDTIGFEDILNDPVQCEMM--GDPHIMTEYK 138

Query:   129 IGL 131
             +GL
Sbjct:   139 LGL 141

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9Y244 POMP "Proteasome maturation protein" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 37/121 (30%), Positives = 66/121 (54%)

Query:    12 GEFQN-DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFD 70
             G F++ D+ R     VK++++ SHPLE   ++ +  ++++    L N  G   P+K+  +
Sbjct:    23 GPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQME 82

Query:    71 RQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIG 130
              + + + QR    + SS L L+ + G+ E  GFE  LNDP +SE     + H  +E ++G
Sbjct:    83 FKAVQQVQR-LPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVM--GEPHLMVEYKLG 139

Query:   131 L 131
             L
Sbjct:   140 L 140

GO:0000502 "proteasome complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031090 "organelle membrane" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1913787 Pomp "proteasome maturation protein" [Mus musculus (taxid:10090)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 37/121 (30%), Positives = 66/121 (54%)

Query:    12 GEFQN-DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFD 70
             G F++ D+ R     VK++++ SHPLE   ++ +  ++++    L N  G   P+K+  +
Sbjct:    23 GPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQME 82

Query:    71 RQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIG 130
              + + +  R    +PSS L L+ + G+ E  GFE  LNDP +SE     + H  +E ++G
Sbjct:    83 FKAVQQVHR-LPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELM--GEPHVMVEHKLG 139

Query:   131 L 131
             L
Sbjct:   140 L 140

GO:0000502 "proteasome complex" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0043248 "proteasome assembly" evidence=ISO

TAIR|locus:2015559 AT1G62920 "AT1G62920" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 21/34 (61%), Positives = 26/34 (76%)

Query:    76 RFQ-RPTGAIPSSMLGLEAVTGSLEDFGFEHYLN 108
             R++ RPTG IPS ML LE  TG+++DF FE YLN
Sbjct:    41 RYENRPTGPIPSLMLDLEVYTGAIDDFDFEDYLN 74

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NP84 F1NP84 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 36/122 (29%), Positives = 65/122 (53%)

Query:    12 GEFQ-NDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFD 70
             G F+ + + R     VK+++V SHPLE   ++ +  +++    +L N  G   P+K+  +
Sbjct:    23 GPFEGHGLLRRGFACVKNELVPSHPLELSEKNFQLNQDKTNFAMLRNIQGLHAPLKLQME 82

Query:    71 RQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIG 130
              + + + QR    + SS + L+ + G+ E  GFE  LNDP +SE     + H  ME ++ 
Sbjct:    83 LRAVKQAQR-LPFLHSSNMALDTLRGNDECIGFEDILNDPSQSEVM--GEPHMMMEYKLD 139

Query:   131 LS 132
             L+
Sbjct:   140 LN 141


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      141       141   0.00091  102 3  11 22  0.43    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  558 (59 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.55u 0.24s 14.79t   Elapsed:  00:00:01
  Total cpu time:  14.55u 0.24s 14.79t   Elapsed:  00:00:01
  Start:  Sat May 11 04:26:40 2013   End:  Sat May 11 04:26:41 2013

GO:0005634 "nucleus" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CQT5	POMP_MOUSE	No assigned EC number	0.3057	0.8297	0.8297	yes	no
Q3SZV5	POMP_BOVIN	No assigned EC number	0.3140	0.8297	0.8297	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT5G38650	proteasome maturation factor UMP1 family protein; proteasome maturation factor UMP1 family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Proteasome maturation factor UMP1 (InterPro-IPR008012); BEST Arabidopsis thaliana protein match is- proteasome maturation factor UMP1 family protein (TAIR-AT1G67250.1); Has 161 Blast hits to 161 proteins in 51 species- Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; [...] (141 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G77710	unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknow [...] (93 aa)				•					0.587
	PBF1	PBF1; peptidase/ threonine-type endopeptidase; Encodes 20S proteasome beta subunit PBF1 (PBF1). [...] (223 aa)				•	•		•		0.575
	AT1G77370	glutaredoxin, putative; glutaredoxin, putative; FUNCTIONS IN- electron carrier activity, arsena [...] (130 aa)				•					0.546
	PBD1	PBD1 (20S PROTEASOME BETA SUBUNIT D1); peptidase/ threonine-type endopeptidase; Encodes 20S pro [...] (204 aa)				•	•				0.528
	MBF1A	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A); DNA binding / transcription coactivator; One of three [...] (142 aa)				•					0.523
	AT5G67600	unknown protein; unknown protein; LOCATED IN- plasma membrane; EXPRESSED IN- 22 plant structure [...] (82 aa)				•					0.516
	AT1G65820	microsomal glutathione s-transferase, putative; microsomal glutathione s-transferase, putative; [...] (194 aa)				•			•		0.514
	PMSR3	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3); oxidoreductase, acting on sulfur group of dono [...] (202 aa)				•					0.506
	AT2G04900	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- N-term [...] (128 aa)				•					0.505
	AT5G01350	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (72 aa)				•					0.497

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
pfam05348	130	pfam05348, UMP1, Proteasome maturation factor UMP1	4e-39

>gnl|CDD|114091 pfam05348, UMP1, Proteasome maturation factor UMP1

 Score =  127 bits (322), Expect = 4e-39
 Identities = 53/130 (40%), Positives = 79/130 (60%), Gaps = 3/130 (2%)

Query: 4   QNKISHQVGEFQN--DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGT 61
            + + H+V    N  D  RF +  VK+ +  SHPLE+  ++ + ++ +    +L N YG 
Sbjct: 2   LSVLEHEVSGLPNTGDALRFGLIPVKNQLADSHPLESSEKNWEAQQRQRNMEVLRNIYGL 61

Query: 62  AFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADL 121
           A P+KMD +++I SR QRP G +PSS L L+ +TG  +   FE  LNDP +SE+  P D 
Sbjct: 62  AEPLKMDMEQKIASRVQRPPGLLPSSNLHLDILTGREDSIDFEDILNDPEDSETMVP-DP 120

Query: 122 HHGMEVRIGL 131
           HHGME R+G+
Sbjct: 121 HHGMEKRLGI 130

UMP1 is a short-lived chaperone present in the precursor form of the 20S proteasome and absent in the mature complex. UMP1 is required for the correct assembly and enzymatic activation of the proteasome. UMP1 seems to be degraded by the proteasome upon its formation. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PF05348	130	UMP1: Proteasome maturation factor UMP1; InterPro:	100.0
KOG3061	137	consensus Proteasome maturation factor [Posttransl	100.0

>PF05348 UMP1: Proteasome maturation factor UMP1; InterPro: IPR008012 UMP1 is a short-lived chaperone present in the precursor form of the 20S proteasome and absent in the mature complex

Probab=100.00  E-value=1.3e-50  Score=303.19  Aligned_cols=122  Identities=39%  Similarity=0.659  Sum_probs=116.8

Q ss_pred             CCCCCCCCCccccccCCccccccccCCCchHHHHHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhCCCCCCCCCC
Q 032413            7 ISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPS   86 (141)
Q Consensus         7 ~~~~~~g~~~DtLR~G~~~~~~~l~~~HPLe~~~~n~~~~q~~~k~~~lr~~yG~~~PlR~~MEr~i~s~~~rlPg~l~S   86 (141)
                      +|+.. ++| |++|+|+.+++++++++||||++++||++||+++||+++||+||+|+|+|+.||++||++++|+|+.++|
T Consensus         9 ~~~~~-~~~-d~~r~G~~~~~~~l~~~HPLE~~~~n~~~~q~~~km~~lr~~~G~~~plr~~ME~~i~~~~~r~P~~l~s   86 (130)
T PF05348_consen    9 APSLP-DTH-DALRHGLSSAKSDLNSSHPLESRLKNWEKTQEELKMEMLRNTYGLAAPLRLQMERKIVSQSQRLPGGLPS   86 (130)
T ss_pred             CCccc-chh-hhhccCCcchhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHccCCCCCCCCc
Confidence            55666 788 9999999999999999999999999999999999999999999999999999999999999999955999


Q ss_pred             ChhhHHhhcCCCCccccccccCCCCCCCCCCCCCcHHHHHHHhCC
Q 032413           87 SMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGL  131 (141)
Q Consensus        87 S~l~lDiL~Grd~~i~feD~ln~p~~se~~~~~d~H~~mE~rlgi  131 (141)
                      ||||+|||+|+|++|+||||||+|+.++.+++ |+|++||+||||
T Consensus        87 S~l~ldiL~G~d~~i~~eD~l~~p~~~e~~~~-d~H~~mE~klGi  130 (130)
T PF05348_consen   87 SNLHLDILTGRDETIDFEDYLNGPEDSEVMGP-DPHSEMERKLGI  130 (130)
T ss_pred             chHHHHHHcCCcccccHHHhcCCcccccccCC-ChHHHHHHHcCC
Confidence            99999999999999999999999999998876 999999999998

UMP1 is required for the correct assembly and enzymatic activation of the proteasome. UMP1 seems to be degraded by the proteasome upon its formation.

>KOG3061 consensus Proteasome maturation factor [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.9e-44  Score=266.75  Aligned_cols=133  Identities=42%  Similarity=0.685  Sum_probs=124.5

Q ss_pred             CCccCCCCCCCCCCCccccccCCccccccccCCCchHHHHHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhCCCC
Q 032413            1 MAAQNKISHQVGEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRP   80 (141)
Q Consensus         1 ~~~~~~~~~~~~g~~~DtLR~G~~~~~~~l~~~HPLe~~~~n~~~~q~~~k~~~lr~~yG~~~PlR~~MEr~i~s~~~rl   80 (141)
                      |++.+.+...++|..+|.+|.|..++++++..+||||++++||+++|+++++.++|++||+++|+|+.||++|++|++|+
T Consensus         5 ~~s~~~~a~~~~g~~~d~~~~g~~~v~t~l~~~HPLess~kn~~~tQ~q~n~~~~R~~~Gl~~Plk~~Me~~~~~q~~rp   84 (137)
T KOG3061|consen    5 IESVKEIAVEVLGATNDALREGLHNVSTQLILSHPLESSLKNWETTQEQLNMVVLRNIYGLAEPLKMDMERKIASQFQRP   84 (137)
T ss_pred             ccchhhhhhhccccchhhhccccccccchhcccCcchhhhhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence            45555666666677779999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhhHHhhcCCCCccccccccCCCCCCCCCCCCCcHHHHHHHhCCCC
Q 032413           81 TGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGLSK  133 (141)
Q Consensus        81 Pg~l~SS~l~lDiL~Grd~~i~feD~ln~p~~se~~~~~d~H~~mE~rlgi~~  133 (141)
                      |++++|||+|+|||+|++++|+||||||||..+++....|+|..||++|||+|
T Consensus        85 p~~~~Ssn~~ldvL~g~~~~ig~ED~~ndp~~sst~~~~d~h~~~ek~lGi~~  137 (137)
T KOG3061|consen   85 PAPLPSSNLGLDVLTGREDNIGFEDILNDPRLSSTEVEVDPHHGMEKRLGISK  137 (137)
T ss_pred             CCCCCccchhhHHHhcccccCCchhccCCccccccccccccccchhhhhcccC
Confidence            98899999999999999999999999999999888877899999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00