Citrus Sinensis ID: 032480

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVSHSSLTVSYLGHDQSAMN
Secondary Structure (PSIPRED)
ccccHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccEEEEcccccHHHHHHHHHHHcccccccccEEEEEEEEEcccccccEEEccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccHHHHccccccccccEEEEEcccccHHHHHHHHHHHcHHHcccccEEEEEEEEccccccEEEEEEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
magvgeaqrrqagrsrplhpsgrgpppppprprfepvdrektcPLLLRVFTKIgghhsredfavrgkepkdevqiytwkDATLRELTDLVKEVAPAARRRDARLSFAfvypdkngrfMVREVSHSSLTVSylghdqsamn
Flexible Loop (DISEMBL)
magvgeaqrrqagrsrplhpsgrgpppppprPRFEPVDREKTCPLLLRVFTKigghhsredfavrgkepkdevqiytwkdatlreLTDLVKEvapaarrrdarlsFAFVYPDKNGRFMVREVSHSSltvsylghdqsamn
Low Complexity Region (SEG)
MAGVGEAQRRQAgrsrplhpsgrgpppppprprFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVSHSSLTVSYLGHDQSAMN
Disordered region (IsUnstruct)
*****************************************TCPLLLRVFTKIGGHHSREDFAVRG***KDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVSHSSLTVSY*********
Disordered Region (DISOPRED)
****************************************KTCPLLLRVFTKIGGHHSRED******EPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVSHSSL*************
Disordered Region (DISEMBL)
********************************RFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVSHSSLTVSYLGHDQSAMN
Disordered Region (DISPRO)
*********************************FEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVSHSSLTVS**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVSHSSLTVSYLGHDQSAMN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
O64644	152	Histone deacetylase compl	yes	no	0.692	0.638	0.804	8e-41
Q3T022	153	Histone deacetylase compl	no	no	0.65	0.594	0.543	1e-21
Q5RDT5	153	Histone deacetylase compl	yes	no	0.65	0.594	0.543	1e-21
O00422	153	Histone deacetylase compl	no	no	0.65	0.594	0.543	1e-21
O55128	153	Histone deacetylase compl	no	no	0.65	0.594	0.543	2e-21
Q9VEX9	150	Histone deacetylase compl	yes	no	0.65	0.606	0.473	5e-20
Q09250	166	Probable histone deacetyl	yes	no	0.657	0.554	0.431	2e-16

>sp|O64644|SAP18_ARATH Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1

 Score =  165 bits (417), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 78/97 (80%), Positives = 87/97 (89%)

Query: 29  PPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTD 88
           PPRP+ EPVDREKTCPLLLRVFTK GGHH+ ED+AVRGKEPKDEVQIYTWKDA+LRELTD
Sbjct: 25  PPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTD 84

Query: 89  LVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVSHS 125
           LVKEV+ AARRR+ARLSFAFVYP+  G + VREV  +
Sbjct: 85  LVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGET 121

Links the histone deacetylase complex to transcriptional repressors bound to chromatin. Involved in the tethering of the SIN3 complex to core histone proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3T022|SAP18_BOVIN Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
           P AR++    +FA V+ D K   + V+E+  +
Sbjct: 78  PEARKKGTHFNFAIVFTDLKRPGYRVKEIGST 109

Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism.

Bos taurus (taxid: 9913)

>sp|Q5RDT5|SAP18_PONAB Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
           P AR++    +FA V+ D K   + V+E+  +
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGST 109

Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism.

Pongo abelii (taxid: 9601)

>sp|O00422|SAP18_HUMAN Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
           P AR++    +FA V+ D K   + V+E+  +
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGST 109

Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism.

Homo sapiens (taxid: 9606)

>sp|O55128|SAP18_MOUSE Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
           P AR++    +FA V+ D K   + V+E+  +
Sbjct: 78  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGST 109

Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism.

Mus musculus (taxid: 10090)

>sp|Q9VEX9|SAP18_DROME Histone deacetylase complex subunit SAP18 OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 63/93 (67%), Gaps = 2/93 (2%)

Query: 31  RPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLV 90
           + + + +DREKTCP+LLRVF   G HHS  ++   G  P +E+QIYTW+DATL ELT LV
Sbjct: 12  KTQVKQIDREKTCPMLLRVFCSTGRHHSVSEYMF-GNVPTNELQIYTWQDATLHELTSLV 70

Query: 91  KEVAPAARRRDARLSFAFVYPD-KNGRFMVREV 122
           ++V P  R++     FA VYP+ ++  F +RE+
Sbjct: 71  RDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREI 103

Involved in the tethering of the SIN3 complex to core histone proteins. Interacts with bicoid (bcd) to repress transcription of bicoid target genes in the anterior tip of the embryo; a process known as retraction. Interacts with Trl and binds to Polycomb response elements at the bithorax complex. May contribute to the regulation of other homeotic gene expressions.

Drosophila melanogaster (taxid: 7227)

>sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subunit SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=3 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVR--GKEPKDEVQIYTWKDATLRELTDLVKE 92
           +P+DREK CP+LLRVF     H+   ++  R  G  P  E+Q++TW D +LRELT L+KE
Sbjct: 16  KPLDREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWMDCSLRELTSLIKE 75

Query: 93  VAPAARRRDARLSFAFVYPDKNG-RFMVREVSHSS 126
           V P ARR+     FA V  D+   R+++R+V +++
Sbjct: 76  VNPDARRKGTTFDFAIVQADRGSPRYILRDVGNTT 110

Acts in transcription repression. Involved in the tethering of the SIN3 complex to core histone proteins.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
449460459	166	PREDICTED: histone deacetylase complex s	0.9	0.759	0.738	2e-45
224067824	151	histone deacetylase complex protein [Pop	0.871	0.807	0.793	2e-44
115443887	152	Os02g0122000 [Oryza sativa Japonica Grou	0.907	0.835	0.716	1e-42
449432217	148	PREDICTED: histone deacetylase complex s	0.821	0.777	0.710	9e-42
225453837	152	PREDICTED: histone deacetylase complex s	0.885	0.815	0.770	1e-41
357145337	151	PREDICTED: histone deacetylase complex s	0.9	0.834	0.701	1e-41
351724413	151	uncharacterized protein LOC100526922 [Gl	0.678	0.629	0.857	3e-41
212724014	152	uncharacterized protein LOC100194333 [Ze	0.871	0.802	0.704	4e-41
356522688	145	PREDICTED: histone deacetylase complex s	0.742	0.717	0.790	6e-41
413935339	121	hypothetical protein ZEAMMB73_760654 [Ze	0.85	0.983	0.721	1e-40

>gi|449460459|ref|XP_004147963.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus] gi|449494271|ref|XP_004159498.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/130 (73%), Positives = 106/130 (81%), Gaps = 4/130 (3%)

Query: 2   AGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSRED 61
           A     Q R +GR  P  PS    PPP PRPRFEPVDREKTCPLLLRVFTK+GGHH+ ED
Sbjct: 13  AATAPTQGRPSGRPLP-PPSQTKAPPPNPRPRFEPVDREKTCPLLLRVFTKVGGHHTDED 71

Query: 62  FAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVRE 121
           FAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAP ARRR+A+LSFAFVYPDK GRF++++
Sbjct: 72  FAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQ 131

Query: 122 VSHSSLTVSY 131
           V    +T SY
Sbjct: 132 V---GMTHSY 138

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067824|ref|XP_002302551.1| histone deacetylase complex protein [Populus trichocarpa] gi|222844277|gb|EEE81824.1| histone deacetylase complex protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 106/126 (84%), Gaps = 4/126 (3%)

Query: 1   MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSRE 60
           MAG+ E QRRQ GR  P   + R  PPPPP P   P+DREKTCPLLLRVFTKIG HHS E
Sbjct: 1   MAGMAEMQRRQGGR--PFALTARAFPPPPPPP--PPIDREKTCPLLLRVFTKIGDHHSNE 56

Query: 61  DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVR 120
           DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV PAARRRDARLSFAFVYPDKNGRF+VR
Sbjct: 57  DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVTPAARRRDARLSFAFVYPDKNGRFVVR 116

Query: 121 EVSHSS 126
           EV  ++
Sbjct: 117 EVGKTN 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115443887|ref|NP_001045723.1| Os02g0122000 [Oryza sativa Japonica Group] gi|41052753|dbj|BAD07609.1| putative P18 [Oryza sativa Japonica Group] gi|113535254|dbj|BAF07637.1| Os02g0122000 [Oryza sativa Japonica Group] gi|125537867|gb|EAY84262.1| hypothetical protein OsI_05642 [Oryza sativa Indica Group] gi|125580615|gb|EAZ21546.1| hypothetical protein OsJ_05174 [Oryza sativa Japonica Group] gi|215768364|dbj|BAH00593.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/134 (71%), Positives = 104/134 (77%), Gaps = 7/134 (5%)

Query: 1   MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSRE 60
           MAG GE   R      P+   G   PPP  R R EPVDREKTCPLLLRVFTK+GGHH  E
Sbjct: 1   MAGRGEMPMRPVRPGPPMQYRG---PPPMARARVEPVDREKTCPLLLRVFTKVGGHHQNE 57

Query: 61  DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVR 120
           +FAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA AAR+R+ARLSFAFVYPDK+GRF+V+
Sbjct: 58  EFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVALAARKRNARLSFAFVYPDKHGRFVVK 117

Query: 121 EVSHSSLTVSYLGH 134
           EV     T SY GH
Sbjct: 118 EVGS---TFSY-GH 127

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432217|ref|XP_004133896.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus] gi|449480076|ref|XP_004155792.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus]

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 91/128 (71%), Positives = 99/128 (77%), Gaps = 13/128 (10%)

Query: 1   MAGVGEAQRRQAGRSRPLHPSGRGPP---PPPPRPRFEPVDREKTCPLLLRVFTKIGGHH 57
           MAG  EA RR  G          GPP     PPRPR EPVDREKTCPLLLRVFTK G HH
Sbjct: 1   MAGEAEAPRRAYG----------GPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHH 50

Query: 58  SREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRF 117
             EDFAVRGKEP+DEVQIYTWKDATLRELTDLVKEVAP ARRR+A+LSFA VYPD++GRF
Sbjct: 51  FNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRF 110

Query: 118 MVREVSHS 125
           ++REV  +
Sbjct: 111 VLREVGKT 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453837|ref|XP_002277566.1| PREDICTED: histone deacetylase complex subunit SAP18 [Vitis vinifera] gi|296089118|emb|CBI38821.3| unnamed protein product [Vitis vinifera]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/131 (77%), Positives = 106/131 (80%), Gaps = 7/131 (5%)

Query: 1   MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSRE 60
           MAG GE  +R    +    P     PPPPPRPRFEPVDREKTCPLLLRVFTKIG HHS+E
Sbjct: 1   MAGAGEGPKR----AGRPLPPPGRGPPPPPRPRFEPVDREKTCPLLLRVFTKIGCHHSKE 56

Query: 61  DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVR 120
           DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDA LSFAFVYPD NGRF++R
Sbjct: 57  DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDAILSFAFVYPDTNGRFVLR 116

Query: 121 EVSHSSLTVSY 131
           EV     T SY
Sbjct: 117 EVGK---TFSY 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357145337|ref|XP_003573608.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Brachypodium distachyon]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/134 (70%), Positives = 102/134 (76%), Gaps = 8/134 (5%)

Query: 1   MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSRE 60
           MAG+GE   R     RP  P     PPP  R R EP+DREKTCPLLLRVFTK+G HH  E
Sbjct: 1   MAGMGEMHMR----PRPGPPMQHRGPPPMARARPEPIDREKTCPLLLRVFTKVGAHHLNE 56

Query: 61  DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVR 120
           DFA RGKEPKDEVQIYTWKDATLRELTDLVKEVA  AR+R+ARLSFAFVYPDKNGRF+V+
Sbjct: 57  DFATRGKEPKDEVQIYTWKDATLRELTDLVKEVALPARKRNARLSFAFVYPDKNGRFVVK 116

Query: 121 EVSHSSLTVSYLGH 134
           +V     T SY GH
Sbjct: 117 QVGS---TFSY-GH 126

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724413|ref|NP_001236033.1| uncharacterized protein LOC100526922 [Glycine max] gi|255631155|gb|ACU15943.1| unknown [Glycine max]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/98 (85%), Positives = 89/98 (90%), Gaps = 3/98 (3%)

Query: 34  FEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 93
            EPVDREKTCPLLLRVFTKIG HHS EDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV
Sbjct: 30  LEPVDREKTCPLLLRVFTKIGSHHSMEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 89

Query: 94  APAARRRDARLSFAFVYPDKNGRFMVREVSHSSLTVSY 131
           APAARRR+A+LSFAFV+PDKNGRF V+EV     T+SY
Sbjct: 90  APAARRRNAKLSFAFVFPDKNGRFKVQEVGK---TLSY 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212724014|ref|NP_001132841.1| uncharacterized protein LOC100194333 [Zea mays] gi|242063858|ref|XP_002453218.1| hypothetical protein SORBIDRAFT_04g001820 [Sorghum bicolor] gi|194695546|gb|ACF81857.1| unknown [Zea mays] gi|195650597|gb|ACG44766.1| histone deacetylase complex subunit SAP18 [Zea mays] gi|241933049|gb|EES06194.1| hypothetical protein SORBIDRAFT_04g001820 [Sorghum bicolor] gi|413935340|gb|AFW69891.1| histone deacetylase complex subunit SAP18 isoform 1 [Zea mays] gi|413935341|gb|AFW69892.1| histone deacetylase complex subunit SAP18 isoform 2 [Zea mays]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 100/125 (80%), Gaps = 3/125 (2%)

Query: 1   MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSRE 60
           MAG+G+   R A    P+   G   PPP  R R EP+DREKTCPLLLRVFT++ GHH  E
Sbjct: 1   MAGMGDMPMRPARPGPPMQHRG---PPPMARLRPEPIDREKTCPLLLRVFTRVAGHHQNE 57

Query: 61  DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVR 120
           +FAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA  AR+R+ARLSFAFVYPDKNGRF+VR
Sbjct: 58  EFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVALPARKRNARLSFAFVYPDKNGRFVVR 117

Query: 121 EVSHS 125
           +V  +
Sbjct: 118 QVGST 122

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522688|ref|XP_003529978.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Glycine max]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 83/105 (79%), Positives = 92/105 (87%), Gaps = 1/105 (0%)

Query: 28  PPPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELT 87
           PP R   EP+DREKTCPLLLRVFTKIG HHS EDFAVRGKEP+DEVQIYTWKDATLRELT
Sbjct: 14  PPSRSCLEPIDREKTCPLLLRVFTKIGSHHSMEDFAVRGKEPEDEVQIYTWKDATLRELT 73

Query: 88  DLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVSHS-SLTVSY 131
           DLVKEVAPAARRR+A+LSFAF++PDKNGRF+VR+       T+SY
Sbjct: 74  DLVKEVAPAARRRNAKLSFAFIFPDKNGRFIVRKFEDDVGKTLSY 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413935339|gb|AFW69890.1| hypothetical protein ZEAMMB73_760654 [Zea mays]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/122 (72%), Positives = 99/122 (81%), Gaps = 3/122 (2%)

Query: 1   MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSRE 60
           MAG+G+   R A    P+   G   PPP  R R EP+DREKTCPLLLRVFT++ GHH  E
Sbjct: 1   MAGMGDMPMRPARPGPPMQHRG---PPPMARLRPEPIDREKTCPLLLRVFTRVAGHHQNE 57

Query: 61  DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVR 120
           +FAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA  AR+R+ARLSFAFVYPDKNGRF+VR
Sbjct: 58  EFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVALPARKRNARLSFAFVYPDKNGRFVVR 117

Query: 121 EV 122
           +V
Sbjct: 118 QV 119

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2043704	152	SAP18 "SIN3 associated polypep	0.707	0.651	0.754	3.5e-36
UNIPROTKB|G3X7E1	172	SAP18 "Histone deacetylase com	0.864	0.703	0.459	7e-22
UNIPROTKB|Q90ZH5	153	chSAP18 "Uncharacterized prote	0.628	0.575	0.561	1.1e-21
UNIPROTKB|Q3T022	153	SAP18 "Histone deacetylase com	0.628	0.575	0.561	1.1e-21
UNIPROTKB|O00422	153	SAP18 "Histone deacetylase com	0.628	0.575	0.561	1.1e-21
UNIPROTKB|I3LF36	153	SAP18 "Uncharacterized protein	0.628	0.575	0.561	1.1e-21
RGD|1310388	153	Sap18 "Sin3-associated polypep	0.628	0.575	0.561	1.5e-21
FB|FBgn0024491	150	Bin1 "Bicoid interacting prote	0.607	0.566	0.505	1.5e-19
GENEDB_PFALCIPARUM|MAL7P1.37	728	MAL7P1.37 "sin3 associated pol	0.635	0.122	0.376	2.6e-10
UNIPROTKB|Q8IBX6	728	MAL7P1.37 "Sin3 associated pol	0.635	0.122	0.376	2.6e-10

TAIR|locus:2043704 SAP18 "SIN3 associated polypeptide P18" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 77/102 (75%), Positives = 86/102 (84%)

Query:    35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
             EPVDREKTCPLLLRVFTK GGHH+ ED+AVRGKEPKDEVQIYTWKDA+LRELTDLVKEV+
Sbjct:    31 EPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVS 90

Query:    95 PAARRRDARLSFAFVYPDKNGRFMVREVSHSSLTVSYLGHDQ 136
              AARRR+ARLSFAFVYP+  G + VREV     T++Y    Q
Sbjct:    91 VAARRRNARLSFAFVYPNNKGGYNVREVGE---TMAYPNRKQ 129

GO:0005634 "nucleus" evidence=ISM

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

UNIPROTKB|G3X7E1 SAP18 "Histone deacetylase complex subunit SAP18" [Bos taurus (taxid:9913)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 56/122 (45%), Positives = 67/122 (54%)

Query:     2 AGVGEAQRRQAXXXXXXXXXXXXXXXXXXXXXFEPVDREKTCPLLLRVFTKIGGHHSRED 61
             AGVG    R A                      +P+DREKTCPLLLRVFT   G H R D
Sbjct:     4 AGVGGQSERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMD 63

Query:    62 FAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVR 120
                RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+
Sbjct:    64 EFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVK 123

Query:   121 EV 122
             E+
Sbjct:   124 EI 125

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q90ZH5 chSAP18 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 50/89 (56%), Positives = 61/89 (68%)

Query:    35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
             +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct:    18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query:    95 PAARRRDARLSFAFVYPD-KNGRFMVREV 122
             P AR++    +FA V+ D K   + V+E+
Sbjct:    78 PEARKKGTHFNFAIVFTDLKRPGYRVKEI 106

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q3T022 SAP18 "Histone deacetylase complex subunit SAP18" [Bos taurus (taxid:9913)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 50/89 (56%), Positives = 61/89 (68%)

Query:    35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
             +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct:    18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query:    95 PAARRRDARLSFAFVYPD-KNGRFMVREV 122
             P AR++    +FA V+ D K   + V+E+
Sbjct:    78 PEARKKGTHFNFAIVFTDLKRPGYRVKEI 106

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|O00422 SAP18 "Histone deacetylase complex subunit SAP18" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 50/89 (56%), Positives = 61/89 (68%)

Query:    35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
             +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct:    18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query:    95 PAARRRDARLSFAFVYPD-KNGRFMVREV 122
             P AR++    +FA V+ D K   + V+E+
Sbjct:    78 PEARKKGTHFNFAIVFTDVKRPGYRVKEI 106

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=TAS

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|I3LF36 SAP18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 50/89 (56%), Positives = 61/89 (68%)

Query:    35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
             +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct:    18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query:    95 PAARRRDARLSFAFVYPD-KNGRFMVREV 122
             P AR++    +FA V+ D K   + V+E+
Sbjct:    78 PEARKKGTHFNFAIVFTDLKRPGYRVKEI 106

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1310388 Sap18 "Sin3-associated polypeptide 18" [Rattus norvegicus (taxid:10116)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 50/89 (56%), Positives = 61/89 (68%)

Query:    35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
             +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct:    18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query:    95 PAARRRDARLSFAFVYPD-KNGRFMVREV 122
             P AR++    +FA V+ D K   + V+E+
Sbjct:    78 PEARKKGTHFNFAIVFMDLKRPGYRVKEI 106

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0024491 Bin1 "Bicoid interacting protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query:    37 VDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPA 96
             +DREKTCP+LLRVF   G HHS  ++   G  P +E+QIYTW+DATL ELT LV++V P 
Sbjct:    18 IDREKTCPMLLRVFCSTGRHHSVSEYMF-GNVPTNELQIYTWQDATLHELTSLVRDVNPD 76

Query:    97 ARRRDARLSFAFVYPD-KNGRFMVREV 122
              R++     FA VYP+ ++  F +RE+
Sbjct:    77 TRKKGTYFDFAVVYPNFRSNHFQMREI 103

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0003714 "transcription corepressor activity" evidence=IGI;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0016580 "Sin3 complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0006342 "chromatin silencing" evidence=IGI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GENEDB_PFALCIPARUM|MAL7P1.37 MAL7P1.37 "sin3 associated polypeptide p18-like protein" [Plasmodium falciparum (taxid:5833)]

 Score = 157 (60.3 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 35/93 (37%), Positives = 57/93 (61%)

Query:    37 VDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPK-DEVQIYTWKDATLRELTDLVKEVAP 95
             ++REKTCP LLR+F K+   ++ +D  +  K+   +E+QIY W D T+RE+  LVK+   
Sbjct:   608 INREKTCPFLLRLFYKVDKEYNVDDMDILTKDNNSNELQIYAWIDITMREIVTLVKDFYK 667

Query:    96 AARRRDARLSF-AFVYPDKNGRFMVREVSHSSL 127
              +R+R+A+  F  F Y  K   F+ +   HS++
Sbjct:   668 DSRQRNAQWVFKVFSYEKKKLTFLSKV--HSTI 698

GO:0000118 "histone deacetylase complex" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

UNIPROTKB|Q8IBX6 MAL7P1.37 "Sin3 associated polypeptide p18-like protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 157 (60.3 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 35/93 (37%), Positives = 57/93 (61%)

Query:    37 VDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPK-DEVQIYTWKDATLRELTDLVKEVAP 95
             ++REKTCP LLR+F K+   ++ +D  +  K+   +E+QIY W D T+RE+  LVK+   
Sbjct:   608 INREKTCPFLLRLFYKVDKEYNVDDMDILTKDNNSNELQIYAWIDITMREIVTLVKDFYK 667

Query:    96 AARRRDARLSF-AFVYPDKNGRFMVREVSHSSL 127
              +R+R+A+  F  F Y  K   F+ +   HS++
Sbjct:   668 DSRQRNAQWVFKVFSYEKKKLTFLSKV--HSTI 698


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       119   0.00091  102 3  11 22  0.47    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  549 (58 KB)
  Total size of DFA:  116 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.84u 0.19s 12.03t   Elapsed:  00:00:01
  Total cpu time:  11.84u 0.19s 12.03t   Elapsed:  00:00:01
  Start:  Sat May 11 06:31:20 2013   End:  Sat May 11 06:31:21 2013

GO:0000118 "histone deacetylase complex" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O64644	SAP18_ARATH	No assigned EC number	0.8041	0.6928	0.6381	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
pfam06487	121	pfam06487, SAP18, Sin3 associated polypeptide p18	7e-42

>gnl|CDD|219057 pfam06487, SAP18, Sin3 associated polypeptide p18 (SAP18)

 Score =  134 bits (340), Expect = 7e-42
 Identities = 54/89 (60%), Positives = 66/89 (74%), Gaps = 2/89 (2%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCP LLRVF K G HHS  DF+  G  P +E+QIYTW DATLRELT L+K+V 
Sbjct: 3   KPIDREKTCPFLLRVFYKNGRHHSLSDFS-SGNVPSNELQIYTWLDATLRELTTLIKDVL 61

Query: 95  PAARRRDARLSFAFVYPDKN-GRFMVREV 122
           P ARRR  R SF  VYPDK  GR++ +++
Sbjct: 62  PPARRRGTRFSFRLVYPDKKRGRYLSKDL 90

This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex which is responsible for the repression of transcription via the modification of histone polypeptides. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PF06487	120	SAP18: Sin3 associated polypeptide p18 (SAP18); In	100.0
KOG3391	151	consensus Transcriptional co-repressor component [	100.0

>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences

Probab=100.00  E-value=1.5e-48  Score=293.75  Aligned_cols=98  Identities=55%  Similarity=0.980  Sum_probs=78.8

Q ss_pred             CCCCccCCCCcEEEEecccCCCCCCcccccCCCCCCCCeeeeecCCCCHHHHHHHHHHhCccccCCCceEEEEEEecCCC
Q 032480           35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKN  114 (140)
Q Consensus        35 ~~iDRektcPFLLRVF~~~g~hH~l~eF~~~g~lP~~ElQIYTW~DaTLrELa~LIk~~~P~ar~~gtrlsFr~VYpD~~  114 (140)
                      ++|||||||||||||||++|+||+++||+. |.+|.||||||||+|||||||++|||+++|++|++||+|+|++||||.+
T Consensus         2 ~~idRektcPfLLRvF~~~g~~h~~~dF~~-~~~P~~elqIYtW~d~TLrEL~~Lik~~~~~~r~~~tr~~F~~VypD~~   80 (120)
T PF06487_consen    2 KPIDREKTCPFLLRVFYRNGRHHRLDDFSR-GSLPRNELQIYTWMDATLRELADLIKDVNPPARRRGTRLSFRLVYPDTR   80 (120)
T ss_dssp             ----CCCS--EEEEEEESSSS---GGGCGC-CS-TTTEEEEEE-TT-BHHHHHHHHHHH-HHHHSTT-EEEEEEEEECTT
T ss_pred             CCcccCCCCCeEEEEEEecCCCCCHHHccC-CCCCcCeeEEEEcccCCHHHHHHHHHHhCcccCCCCCEEEEEEEeecCC
Confidence            579999999999999999999999999995 9999999999999999999999999999999999999999999999965


Q ss_pred             -CCcceeccCCcceEEecCCccc
Q 032480          115 -GRFMVREVSHSSLTVSYLGHDQ  136 (140)
Q Consensus       115 -grf~~rdLG~~~~v~s~~~~~~  136 (140)
                       |+|.+||||   +|++|+++.+
T Consensus        81 ~~r~~~kdlG---sv~~g~~~~d  100 (120)
T PF06487_consen   81 SGRYVSKDLG---SVVSGRKGPD  100 (120)
T ss_dssp             TTCEEEEEEE---EEETTB--TT
T ss_pred             CCceeeecCC---eEECCCCCCC
Confidence             999999999   9999988554

SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.

>KOG3391 consensus Transcriptional co-repressor component [Transcription]

Probab=100.00  E-value=4.2e-44  Score=277.70  Aligned_cols=99  Identities=56%  Similarity=0.906  Sum_probs=94.3

Q ss_pred             CCCCccCCCCcEEEEecc-cCCCCCCcccccCCCCCCCCeeeeecCCCCHHHHHHHHHHhCccccCCCceEEEEEEecCC
Q 032480           35 EPVDREKTCPLLLRVFTK-IGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDK  113 (140)
Q Consensus        35 ~~iDRektcPFLLRVF~~-~g~hH~l~eF~~~g~lP~~ElQIYTW~DaTLrELa~LIk~~~P~ar~~gtrlsFr~VYpD~  113 (140)
                      ++||||||||||||||++ +|+||.+|||+. |++|++||||||||||||+||+.||||++|++|++||.|+|++||+|.
T Consensus        16 ~piDrektCPlLlrVf~~~~g~hH~~def~~-g~vPs~elQiYtW~datL~ELtsLvkevnpeaR~kgt~f~fa~Vf~d~   94 (151)
T KOG3391|consen   16 KPIDREKTCPLLLRVFTQFNGRHHVMDEFED-GNVPSSELQIYTWMDATLRELTSLVKEVNPEARKKGTSFDFAVVFPDK   94 (151)
T ss_pred             CcccccccCcceeeeeeecCCCCcchhhhhc-CCCCchheeEeehhhhhHHHHHHHHHHcCHHHhccCceEEEEEEeccC
Confidence            689999999999999999 999999999994 999999999999999999999999999999999999999999999998


Q ss_pred             C-CCcceeccCCcceEEecCCcccc
Q 032480          114 N-GRFMVREVSHSSLTVSYLGHDQS  137 (140)
Q Consensus       114 ~-grf~~rdLG~~~~v~s~~~~~~~  137 (140)
                      + .+|.+||||   +||+|++.-|.
T Consensus        95 ~~~~y~~RevG---~t~~g~Kg~dd  116 (151)
T KOG3391|consen   95 KSPRYIVREVG---TTCLGRKGIDD  116 (151)
T ss_pred             CCCCceeeeec---ccccCcccCCc
Confidence            6 599999999   99999987554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
4a6q_A	143	Crystal Structure Of Mouse Sap18 Residues 6-143 Len		7e-23
4a90_A	143	Crystal Structure Of Mouse Sap18 Residues 1-143 Len		1e-22
4a8x_C	130	Structure Of The Core Asap Complex Length = 130		1e-22
2hde_A	148	Solution Structure Of Human Sap18 Length = 148		1e-21

>pdb|4A6Q|A Chain A, Crystal Structure Of Mouse Sap18 Residues 6-143 Length = 143

Iteration: 1
 Score =  102 bits (254), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRXDEFSRGNVPSSELQIYTWXDATLKELTSLVKEVY 77
Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
           P AR++    +FA V+ D K   + V+E+  +
Sbjct: 78  PEARKKGTHFNFAIVFXDLKRPGYRVKEIGST 109

>pdb|4A90|A Chain A, Crystal Structure Of Mouse Sap18 Residues 1-143 Length = 143

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77
Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
           P AR++    +FA V+ D K   + V+E+  +
Sbjct: 78  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGST 109

>pdb|4A8X|C Chain C, Structure Of The Core Asap Complex Length = 130

Iteration: 1
 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 5   KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 64
Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
           P AR++    +FA V+ D K   + V+E+  +
Sbjct: 65  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGST 96

>pdb|2HDE|A Chain A, Solution Structure Of Human Sap18 Length = 148

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKT PLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 17  KPIDREKTSPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 76
Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVSHS 125
           P AR++    +FA V+ D K   + V+E+  +
Sbjct: 77  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGST 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
4a6q_A	143	Histone deacetylase complex subunit SAP18; transcr	1e-40

>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C Length = 143

 Score =  131 bits (332), Expect = 1e-40
 Identities = 51/99 (51%), Positives = 61/99 (61%), Gaps = 4/99 (4%)

Query: 25  PPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLR 84
                P     P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+
Sbjct: 11  EIKKEPEK---PIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLK 67

Query: 85  ELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREV 122
           ELT LVKEV P AR++    +FA V+ D K   + V+E+
Sbjct: 68  ELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEI 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
4a6q_A	143	Histone deacetylase complex subunit SAP18; transcr	100.0
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	91.69

>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C

Probab=100.00  E-value=1.5e-48  Score=300.86  Aligned_cols=102  Identities=51%  Similarity=0.837  Sum_probs=95.8

Q ss_pred             CCCCCCCccCCCCcEEEEeccc-CCCCCCcccccCCCCCCCCeeeeecCCCCHHHHHHHHHHhCccccCCCceEEEEEEe
Q 032480           32 PRFEPVDREKTCPLLLRVFTKI-GGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVY  110 (140)
Q Consensus        32 ~~~~~iDRektcPFLLRVF~~~-g~hH~l~eF~~~g~lP~~ElQIYTW~DaTLrELa~LIk~~~P~ar~~gtrlsFr~VY  110 (140)
                      ...++|||||||||||||||++ |+||+++||+ +|++|+||||||||+|||||||++|||+++|++|++||+|+|++||
T Consensus        15 ~~~~~idRektcPfLLRvF~~~ng~hh~~~eF~-~~~~P~~ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~Vy   93 (143)
T 4a6q_A           15 EPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVF   93 (143)
T ss_dssp             CCCCCCCGGGSCCEEEEEEEESSSSCCCGGGGC-TTCCCSCCEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEE
T ss_pred             CCCCCccccCCCCeEEEEEecCCCCCCCHHHcc-CCCCCCceeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEc
Confidence            3456799999999999999999 7999999998 5899999999999999999999999999999999999999999999


Q ss_pred             cC-CCCCcceeccCCcceEEecCCcccc
Q 032480          111 PD-KNGRFMVREVSHSSLTVSYLGHDQS  137 (140)
Q Consensus       111 pD-~~grf~~rdLG~~~~v~s~~~~~~~  137 (140)
                      || ++|+|++||||   +|++|+++.+.
T Consensus        94 pD~r~~ry~~kdlG---sv~~g~~~~dd  118 (143)
T 4a6q_A           94 MDLKRPGYRVKEIG---STMSGRKGTDD  118 (143)
T ss_dssp             ECSSSSSEEEEEEE---EEETTBCCTTT
T ss_pred             ccCCCCceeeccCC---EEecCCCCCcc
Confidence            99 56899999999   99999988764

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=91.69  E-value=1  Score=32.28  Aligned_cols=65  Identities=15%  Similarity=0.229  Sum_probs=40.1

Q ss_pred             CCCcchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcEEEEecccCCCCCCcccccCCCCCCCCeeeeecCC
Q 032480            1 MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKD   80 (140)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDRektcPFLLRVF~~~g~hH~l~eF~~~g~lP~~ElQIYTW~D   80 (140)
                      ||+.||        ++..++|-++.++++..+....-+      =.++||++..  .             ..+.|-...+
T Consensus         1 ~~~~~~--------~~~~~~~~~~~~~~~~s~~~~~~~------~~m~I~Vk~~--g-------------~~~~l~v~~~   51 (125)
T 1j8c_A            1 MAENGE--------SSGPPRPSRGPAAAQGSAAAPAEP------KIIKVTVKTP--K-------------EKEEFAVPEN   51 (125)
T ss_dssp             CCCSCC--------CCCCCSSCCCSCCCCCSSSCCCCC------CCEEEEEECS--S-------------CEEEEEECTT
T ss_pred             CCccCc--------CCCCCChhhCCcCCCCCCcccCCC------CcEEEEEEeC--C-------------eEEEEEECCC
Confidence            666565        666777777765555533333222      2378888762  0             1233445678


Q ss_pred             CCHHHHHHHHHHhC
Q 032480           81 ATLRELTDLVKEVA   94 (140)
Q Consensus        81 aTLrELa~LIk~~~   94 (140)
                      .|+.+|-..|.+..
T Consensus        52 ~TV~~LK~~I~~~~   65 (125)
T 1j8c_A           52 SSVQQFKEAISKRF   65 (125)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHH
Confidence            99999999998853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00