Citrus Sinensis ID: 032560

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLLLSSVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEKGILEWLKTNK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccHHcccccccccccccHHHHHHHHHHHcccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHcHHHHHHHEEEEcccccccccEEcccccccccccccHHHHHHHHcccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSSIDQSILMALTVTVNKYASLNVQAVHrreaktpkttgAKAKAAAAFHDIGRRGLLLSSVVaapqvnnddsKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFiegslkgkseqelSESEKGILEWLKTNK
Flexible Loop (DISEMBL)
MSSIDQSILMALTVTVNKYASLNVqavhrreaktpkttgakAKAAAAFHDIGRRGLLLSSVVAapqvnnddsktQLLQKYlkkseenkakndkermdsYYKRNYKDYFDFIEGSlkgkseqelsesekgilewlktnk
Low Complexity Region (SEG)
MSSIDQSILMALTVTVNKYASLNVQAVHRREaktpkttgakakaaaaFHDIGRRGLLLSSVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEKGILEWLKTNK
Disordered region (IsUnstruct)
*******ILMALTVTVNKYASLNVQAVH***************AAAAFHDIGRRGLLLSSVVA***********************************YYKRNYKDYFDFIE**************************
Disordered Region (DISOPRED)
*****QS*LMALTVTVNKYAS*************************AFHDIGRRGLLLSSVV***********************************SYYKRNYKDYFDFI********************EWLKT**
Disordered Region (DISEMBL)
MSSIDQSILMALTVTVNKYASLNVQAVHR****************AAFHDIGRRGLLLSSVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKG*********EKGILEWLKTNK
Disordered Region (DISPRO)
***IDQSILMALTVTVNKYASLNVQAVHR********TGAKAKAAA**HDIGRRGLLLSSVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGK*EQELSESEKGILEWLKTN*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLLLSSVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESEKGILEWLKTNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
255562272	135	conserved hypothetical protein [Ricinus	0.978	1.0	0.695	1e-46
224060851	135	predicted protein [Populus trichocarpa]	0.978	1.0	0.688	5e-44
388516755	131	unknown [Medicago truncatula]	0.949	1.0	0.637	2e-42
18402865	129	uncharacterized protein [Arabidopsis tha	0.920	0.984	0.664	1e-41
297847328	129	hypothetical protein ARALYDRAFT_314408 [	0.920	0.984	0.657	4e-41
26451610	129	unknown protein [Arabidopsis thaliana]	0.920	0.984	0.657	5e-41
356536087	136	PREDICTED: uncharacterized protein LOC10	0.956	0.970	0.633	9e-39
388497024	132	unknown [Lotus japonicus]	0.956	1.0	0.615	1e-38
357455887	124	hypothetical protein MTR_3g008630 [Medic	0.898	1.0	0.610	1e-36
449495699	129	PREDICTED: uncharacterized LOC101214221	0.920	0.984	0.6	1e-35

>gi|255562272|ref|XP_002522144.1| conserved hypothetical protein [Ricinus communis] gi|223538743|gb|EEF40344.1| conserved hypothetical protein [Ricinus communis]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/138 (69%), Positives = 113/138 (81%), Gaps = 3/138 (2%)

Query: 1   MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLLLSS 60
           MSSI QS+LMALTVTVNK+AS NV +V RREA + K++     A  AF   GRRG+LLS+
Sbjct: 1   MSSISQSVLMALTVTVNKFASSNVHSVQRREA-SKKSSPTSGSATTAFPIFGRRGILLSA 59

Query: 61  VVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSE 120
           +VAA  VN  DSKT+LL+KYLKKSEEN+ KNDKER+DSYYKRNYKDYFD +EG L+GK E
Sbjct: 60  LVAAYPVN--DSKTELLKKYLKKSEENRTKNDKERLDSYYKRNYKDYFDLVEGGLRGKKE 117

Query: 121 QELSESEKGILEWLKTNK 138
           Q+LSESEKGIL+WLK NK
Sbjct: 118 QDLSESEKGILDWLKNNK 135

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060851|ref|XP_002300278.1| predicted protein [Populus trichocarpa] gi|222847536|gb|EEE85083.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 95/138 (68%), Positives = 112/138 (81%), Gaps = 3/138 (2%)

Query: 1   MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLLLSS 60
           MSSI QS+LMALTVT NK+AS NV AVH++E+K          A+ A  DIGRRG+LLS+
Sbjct: 1   MSSISQSVLMALTVTFNKFASSNVNAVHKKESKRAAAATTAKAASRA-ADIGRRGVLLST 59

Query: 61  VVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSE 120
           VV    VN  DS+ +LL+KYLKKSE+NK KNDKERMDSYYKRNYKDYFDF+EGSLKGK+E
Sbjct: 60  VVGVYSVN--DSRIELLKKYLKKSEDNKTKNDKERMDSYYKRNYKDYFDFVEGSLKGKNE 117

Query: 121 QELSESEKGILEWLKTNK 138
           Q+L+ESEKGIL+WLK NK
Sbjct: 118 QDLTESEKGILDWLKKNK 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516755|gb|AFK46439.1| unknown [Medicago truncatula]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/138 (63%), Positives = 106/138 (76%), Gaps = 7/138 (5%)

Query: 1   MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLLLSS 60
           MSSI Q++LMALTVTVNKYAS NVQAVH R+   P              + GRRGL+LS+
Sbjct: 1   MSSIGQTMLMALTVTVNKYASSNVQAVHNRKQANPTLRSTNL-------EFGRRGLVLST 53

Query: 61  VVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSE 120
           V+AA    + +S+T LLQKYLKK+EENK KNDKER+DSYYKRNYKDYF+F+EG L+GK E
Sbjct: 54  VIAATATQDPESRTLLLQKYLKKTEENKEKNDKERVDSYYKRNYKDYFEFVEGGLQGKEE 113

Query: 121 QELSESEKGILEWLKTNK 138
            +LSE+EKGIL+WLK NK
Sbjct: 114 GKLSEAEKGILDWLKANK 131

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402865|ref|NP_564561.1| uncharacterized protein [Arabidopsis thaliana] gi|21537001|gb|AAM61342.1| unknown [Arabidopsis thaliana] gi|88011187|gb|ABD38915.1| At1g49975 [Arabidopsis thaliana] gi|332194381|gb|AEE32502.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/140 (66%), Positives = 106/140 (75%), Gaps = 13/140 (9%)

Query: 1   MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLLLSS 60
           MSSI QSILMALTVTVNKYAS NVQAV R + K    T   A       D+GRR +L SS
Sbjct: 1   MSSISQSILMALTVTVNKYASSNVQAVRRNDTKRHSLTAPPA-------DLGRRNILFSS 53

Query: 61  V--VAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGK 118
              +AA   ++D    QLLQKYLKK+EENKAKNDKER+DS+YKRNYKDYF+F+EGS+KGK
Sbjct: 54  TSFIAAALTSSD----QLLQKYLKKTEENKAKNDKERLDSFYKRNYKDYFEFVEGSIKGK 109

Query: 119 SEQELSESEKGILEWLKTNK 138
           +E ELSESEK ILEWLK NK
Sbjct: 110 TEAELSESEKRILEWLKANK 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847328|ref|XP_002891545.1| hypothetical protein ARALYDRAFT_314408 [Arabidopsis lyrata subsp. lyrata] gi|297337387|gb|EFH67804.1| hypothetical protein ARALYDRAFT_314408 [Arabidopsis lyrata subsp. lyrata]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/140 (65%), Positives = 105/140 (75%), Gaps = 13/140 (9%)

Query: 1   MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLLLSS 60
           MSSI QSILMALTVTVNKYAS NVQAV R + K    T   A       D+GRR +L SS
Sbjct: 1   MSSISQSILMALTVTVNKYASSNVQAVRRNDTKRDSLTAPVA-------DLGRRNILFSS 53

Query: 61  V--VAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGK 118
              +A    ++D    QLLQKYLKK+EENKAKNDKER+DS+YKRNYKDYF+F+EGS+KGK
Sbjct: 54  TSFIATALTSSD----QLLQKYLKKTEENKAKNDKERLDSFYKRNYKDYFEFVEGSIKGK 109

Query: 119 SEQELSESEKGILEWLKTNK 138
           +E ELSESEK ILEWLK NK
Sbjct: 110 TEAELSESEKRILEWLKANK 129

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451610|dbj|BAC42902.1| unknown protein [Arabidopsis thaliana]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 92/140 (65%), Positives = 106/140 (75%), Gaps = 13/140 (9%)

Query: 1   MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLLLSS 60
           MSSI QSILMALTVTVNKYAS NVQAV R + K    T   A       D+GRR +L SS
Sbjct: 1   MSSISQSILMALTVTVNKYASSNVQAVRRNDTKRHSLTAPPA-------DLGRRNILFSS 53

Query: 61  V--VAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGK 118
              +AA   ++D    QLLQKYLKK+EE+KAKNDKER+DS+YKRNYKDYF+F+EGS+KGK
Sbjct: 54  TSFIAAALTSSD----QLLQKYLKKTEEDKAKNDKERLDSFYKRNYKDYFEFVEGSIKGK 109

Query: 119 SEQELSESEKGILEWLKTNK 138
           +E ELSESEK ILEWLK NK
Sbjct: 110 TEAELSESEKRILEWLKANK 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536087|ref|XP_003536572.1| PREDICTED: uncharacterized protein LOC100800755 [Glycine max]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 109/139 (78%), Gaps = 7/139 (5%)

Query: 2   SSIDQSILMALTVTVNKYASLNVQAVHRREAK--TPKTTGAKAKAAAAFHDIGRRGLLLS 59
           SSI QSILMALTVTVNKYAS N+QAV R + K  T KTT       +   ++GRRGL+LS
Sbjct: 3   SSIGQSILMALTVTVNKYASSNLQAVPRTQGKVATKKTT----PTLSTNVEMGRRGLVLS 58

Query: 60  SVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKS 119
           +V+A  QV   DS+TQLL+KY KKSEENK KNDKER++SYYKRNYKDYF+ +EG+LK K 
Sbjct: 59  TVIATTQVPEPDSRTQLLKKYQKKSEENKEKNDKERLESYYKRNYKDYFELMEGTLKAK- 117

Query: 120 EQELSESEKGILEWLKTNK 138
           + +LS++EKGIL+WL+ NK
Sbjct: 118 DGKLSDTEKGILDWLQKNK 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497024|gb|AFK36578.1| unknown [Lotus japonicus]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 106/138 (76%), Gaps = 6/138 (4%)

Query: 1   MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLLLSS 60
           MSS+ QSILMALTVTVNKYA  N+QAVHR + K    T       +   ++GRRGL+LS+
Sbjct: 1   MSSVGQSILMALTVTVNKYAPSNLQAVHRTQEKAGNQT---TPTLSTNGEVGRRGLILST 57

Query: 61  VVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSE 120
            +A  QV   +S+TQLL+KY KKSEENK KN KER+DSYYKRNYKDYF+ +EG+LKGK +
Sbjct: 58  AIATTQV--PESRTQLLKKYQKKSEENKEKNGKERLDSYYKRNYKDYFELMEGTLKGK-D 114

Query: 121 QELSESEKGILEWLKTNK 138
            ELSE+EKGI +WL++NK
Sbjct: 115 GELSETEKGIRDWLQSNK 132

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455887|ref|XP_003598224.1| hypothetical protein MTR_3g008630 [Medicago truncatula] gi|355487272|gb|AES68475.1| hypothetical protein MTR_3g008630 [Medicago truncatula]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/131 (61%), Positives = 96/131 (73%), Gaps = 7/131 (5%)

Query: 8   ILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLLLSSVVAAPQV 67
           +LMALTVTVNKY S NVQAVH R+   P              + GRRGL+LS V+AA   
Sbjct: 1   MLMALTVTVNKYTSSNVQAVHNRKQANPTLRSTNM-------EFGRRGLVLSIVIAATAT 53

Query: 68  NNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESE 127
            + +S+T LLQKYLKK++ENK KNDKER+DS YKRNYKDYF+FIEG L+ K E +LSE+E
Sbjct: 54  QDPESRTLLLQKYLKKTQENKEKNDKERVDSNYKRNYKDYFEFIEGGLQAKEEGKLSEAE 113

Query: 128 KGILEWLKTNK 138
           KGIL+WLK NK
Sbjct: 114 KGILDWLKANK 124

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495699|ref|XP_004159918.1| PREDICTED: uncharacterized LOC101214221 [Cucumis sativus]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 103/140 (73%), Gaps = 13/140 (9%)

Query: 1   MSSIDQSILMALTVTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLLLSS 60
           MSSI QSILMAL VT+NK+AS NVQ+V R +A    T  +          IGRR LLLS+
Sbjct: 1   MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATATVSS---------PIGRRSLLLST 51

Query: 61  VVAAPQVNND--DSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGK 118
           +  A        DS+T+LL++YLKKSEENK KNDKER++SYYKRNYKDYF+F+EGS+K K
Sbjct: 52  LAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYFEFVEGSVKNK 111

Query: 119 SEQELSESEKGILEWLKTNK 138
           +  ELSE+EKGI+EWLK NK
Sbjct: 112 N--ELSEAEKGIVEWLKRNK 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
TAIR|locus:505006176	129	AT1G49975 [Arabidopsis thalian	0.920	0.984	0.642	1.6e-38
GENEDB_PFALCIPARUM|PF14_0712	2977	PF14_0712 "hypothetical protei	0.478	0.022	0.342	0.00084
UNIPROTKB|Q8IK94	2977	PF14_0712 "Putative uncharacte	0.478	0.022	0.342	0.00084

TAIR|locus:505006176 AT1G49975 [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 90/140 (64%), Positives = 103/140 (73%)

Query:     1 MSSIDQSILMALTVTVNKYASLNVQAVHRREXXXXXXXXXXXXXXXXFHDIGRRGLLLSS 60
             MSSI QSILMALTVTVNKYAS NVQAV R +                  D+GRR +L SS
Sbjct:     1 MSSISQSILMALTVTVNKYASSNVQAVRRNDTKRHSLTAPPA-------DLGRRNILFSS 53

Query:    61 V--VAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGK 118
                +AA   ++D    QLLQKYLKK+EENKAKNDKER+DS+YKRNYKDYF+F+EGS+KGK
Sbjct:    54 TSFIAAALTSSD----QLLQKYLKKTEENKAKNDKERLDSFYKRNYKDYFEFVEGSIKGK 109

Query:   119 SEQELSESEKGILEWLKTNK 138
             +E ELSESEK ILEWLK NK
Sbjct:   110 TEAELSESEKRILEWLKANK 129

GO:0005516 "calmodulin binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009522 "photosystem I" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0042651 "thylakoid membrane" evidence=IEA

GENEDB_PFALCIPARUM|PF14_0712 PF14_0712 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]

 Score = 98 (39.6 bits), Expect = 0.00084, Sum P(2) = 0.00084
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query:    68 NNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESE 127
             +N     + L +++ K EENK KN KE+ DS Y   Y DYF+ I+     KS+ +  E +
Sbjct:   967 DNSSRDKKYLMEHINKEEENKEKN-KEKYDSIY---YYDYFEIIKDIYVKKSKNKKDEKK 1022

Query:   128 KGILEWLKTN 137
                 +   TN
Sbjct:  1023 MSTYKMTTTN 1032

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8IK94 PF14_0712 "Putative uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 98 (39.6 bits), Expect = 0.00084, Sum P(2) = 0.00084
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query:    68 NNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGKSEQELSESE 127
             +N     + L +++ K EENK KN KE+ DS Y   Y DYF+ I+     KS+ +  E +
Sbjct:   967 DNSSRDKKYLMEHINKEEENKEKN-KEKYDSIY---YYDYFEIIKDIYVKKSKNKKDEKK 1022

Query:   128 KGILEWLKTN 137
                 +   TN
Sbjct:  1023 MSTYKMTTTN 1032

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0020011 "apicoplast" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_I1072 hypothetical protein (136 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	138
PLN00078	122	PLN00078, PLN00078, photosystem I reaction center	6e-28

>gnl|CDD|165653 PLN00078, PLN00078, photosystem I reaction center subunit N (PsaN); Provisional

 Score = 99.4 bits (247), Expect = 6e-28
 Identities = 60/100 (60%), Positives = 70/100 (70%), Gaps = 3/100 (3%)

Query: 41  KAKAAAAFHDIGRRGLL--LSSVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMDS 98
            A   A  + I RR LL  L+S  A P+  ++ S+  LLQ+YLKKSEENK KNDKER+D 
Sbjct: 24  PAAMLAQRNGISRRCLLTFLTSTAAIPEAGSE-SRKALLQEYLKKSEENKEKNDKERLDD 82

Query: 99  YYKRNYKDYFDFIEGSLKGKSEQELSESEKGILEWLKTNK 138
           YYKRNYKDYF  IEG  + K E EL+ESEKGILEWL  NK
Sbjct: 83  YYKRNYKDYFGLIEGPAREKKEDELTESEKGILEWLDKNK 122

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
PLN00078	122	photosystem I reaction center subunit N (PsaN); Pr	100.0
PF05479	138	PsaN: Photosystem I reaction centre subunit N (PSA	99.89
PLN00054	139	photosystem I reaction center subunit N; Provision	99.57

>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional

Probab=100.00  E-value=2.8e-42  Score=261.01  Aligned_cols=95  Identities=63%  Similarity=0.941  Sum_probs=89.8

Q ss_pred             hhhhhhhccchhhHHH--Hhhhhhcc-CCCCCchhHHHHHHHHHhhHHhHhhhhHHHHhHHHhhhhhhhhhhhccccCCC
Q 032560           42 AKAAAAFHDIGRRGLL--LSSVVAAP-QVNNDDSKTQLLQKYLKKSEENKAKNDKERMDSYYKRNYKDYFDFIEGSLKGK  118 (138)
Q Consensus        42 ~~~~~~~~~~gRR~~l--Laa~~a~~-~a~n~~s~s~lIq~ylkKSeeNKekNDKERLd~yYkRnY~dyF~~~eG~~~~k  118 (138)
                      +-..++++++.|||+|  |++++++| +++  +++.+|||+||+||+|||++|||||||+||||||+|||+||||++++|
T Consensus        25 ~~~~a~rng~srr~llt~l~staaip~~~~--~Sr~~liq~llkkSeeNKakndkERLDdYYKRNykDYF~fveG~~r~k  102 (122)
T PLN00078         25 AAMLAQRNGISRRCLLTFLTSTAAIPEAGS--ESRKALLQEYLKKSEENKEKNDKERLDDYYKRNYKDYFGLIEGPAREK  102 (122)
T ss_pred             HHHHHHhcchhHHHHHHHHHhhccCCCCcC--chHHHHHHHHHHHhHHhHHHhHHHHHHHHHHHhHHHHHHHhccccccC
Confidence            4457889999999999  89999997 455  889999999999999999999999999999999999999999999999


Q ss_pred             CccccchhHHHHHHHHhhcC
Q 032560          119 SEQELSESEKGILEWLKTNK  138 (138)
Q Consensus       119 ~~~~lsesek~Il~wL~knk  138 (138)
                      ++++|||+||+|++||++||
T Consensus       103 ke~eLsEsEK~IleWL~KNK  122 (122)
T PLN00078        103 KEDELTESEKGILEWLDKNK  122 (122)
T ss_pred             ChhhcCHHHHHHHHHHHccC
Confidence            99999999999999999997

>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins

Probab=99.89  E-value=1.5e-25  Score=173.30  Aligned_cols=103  Identities=34%  Similarity=0.387  Sum_probs=36.6

Q ss_pred             HhhhcccccchhhhhhccccCCCcchhhhhhhhhhccchhhHHH-HhhhhhccCCCCCchhHHHHHHHHHhhHHhHhhhh
Q 032560           14 VTVNKYASLNVQAVHRREAKTPKTTGAKAKAAAAFHDIGRRGLL-LSSVVAAPQVNNDDSKTQLLQKYLKKSEENKAKND   92 (138)
Q Consensus        14 vtvnk~as~nv~av~~~~~k~~~~~~~~~~~~~~~~~~gRR~~l-Laa~~a~~~a~n~~s~s~lIq~ylkKSeeNKekND   92 (138)
                      |+++||+++|+|+||...++++..       ++  ++..||.+| |+++++++++++++++.++|++||+||++|||+||
T Consensus         1 ~~~~k~asa~~qai~~~ka~~~~~-------~~--~~~~Raall~Laa~l~~tAa~a~~A~A~l~~dyL~KSkaNKelND   71 (138)
T PF05479_consen    1 VVGLKPASAKVQAIRAAKAKRVVV-------RA--SDGRRAALLGLAAVLAATAASASSARAGLLEDYLEKSKANKELND   71 (138)
T ss_dssp             ----------------------------------------------------------------SSSSS-SSHSSSSSTT
T ss_pred             CCccchhhcccchhhhccCCCccc-------cc--CccchHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHhHhhhhhhh
Confidence            689999999999999998887665       22  334455555 79999988888789999999999999999999999


Q ss_pred             HHHHh---HHHhhhhhhhhhhhccccCCCCccccch
Q 032560           93 KERMD---SYYKRNYKDYFDFIEGSLKGKSEQELSE  125 (138)
Q Consensus        93 KERLd---~yYkRnY~dyF~~~eG~~~~k~~~~lse  125 (138)
                      ||||+   ++|.|+|++||++.+.+..-.--++|.+
T Consensus        72 KkRlaTs~aNfaR~~tv~fg~c~fP~n~~gc~~la~  107 (138)
T PF05479_consen   72 KKRLATSYANFARAYTVQFGTCKFPENFTGCQDLAK  107 (138)
T ss_dssp             TSS-TSSSSSSTSGTT--TSTSSSSS-SSSSSSS-S
T ss_pred             HHHhhhhhhhhhhheeeecccccCCccchhhHHHHH
Confidence            99999   6667999999999998876544445543

The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.

>PLN00054 photosystem I reaction center subunit N; Provisional

Probab=99.57  E-value=1e-15  Score=118.89  Aligned_cols=65  Identities=23%  Similarity=0.290  Sum_probs=58.5

Q ss_pred             hccchhhHHH--HhhhhhccCCCCCchhHHHHHHHHHhhHHhHhhhhHHHHh---HHHhhhhhhhhhhhc
Q 032560           48 FHDIGRRGLL--LSSVVAAPQVNNDDSKTQLLQKYLKKSEENKAKNDKERMD---SYYKRNYKDYFDFIE  112 (138)
Q Consensus        48 ~~~~gRR~~l--Laa~~a~~~a~n~~s~s~lIq~ylkKSeeNKekNDKERLd---~yYkRnY~dyF~~~e  112 (138)
                      .++.|||.+|  |+++++++++...+++.++|++||+||++|||.|||+||.   ++|.|.|++||++.+
T Consensus        25 ~~~~grraa~~~Laa~l~~~aa~~~~AnAgv~~d~L~kS~aNKeLNDKKRlATS~ANfaRa~TV~~G~C~   94 (139)
T PLN00054         25 DASDGRRAALVGLAATLFSTAAAAASANAGVISDLLAKSKANKELNDKKRLATSGANFARSRTVQDGTCK   94 (139)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhhhhhhHHhhhhcchhhhhheeeeccccc
Confidence            4568899888  7899888887778999999999999999999999999999   779999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
2wsc_N	170	PSAN, PSI-N, photosystem I-N subunit; photosynthes	99.11
3lw5_N	85	Photosystem I-N subunit, photosystem I reaction ce	97.98

>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*

Probab=99.11  E-value=1.3e-13  Score=108.54  Aligned_cols=63  Identities=32%  Similarity=0.539  Sum_probs=35.3

Q ss_pred             ccchhhHHH--HhhhhhccCC--CCCchhHHHHHHHHHhhHHhHhhhhHHHHh---HHHhhhhhhhhhhh
Q 032560           49 HDIGRRGLL--LSSVVAAPQV--NNDDSKTQLLQKYLKKSEENKAKNDKERMD---SYYKRNYKDYFDFI  111 (138)
Q Consensus        49 ~~~gRR~~l--Laa~~a~~~a--~n~~s~s~lIq~ylkKSeeNKekNDKERLd---~yYkRnY~dyF~~~  111 (138)
                      +..|||.+|  |+++++++++  ++++++.++|++||+||++|||.|||+||.   ++|.|.|+++|+.-
T Consensus        56 ~~~~rRaAl~~LaA~l~~~aa~~~~~sA~Agv~~d~L~kS~aNKeLNDKKRlATS~ANfaRa~TV~~GtC  125 (170)
T 2wsc_N           56 SDQGRRSALVYLAATLFTAAAAASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSC  125 (170)
T ss_dssp             ------------------------------CCCCSCSCSSCSCSSSCCCSSCCSSSSSSCSCTTCCCSCS
T ss_pred             ccchhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHhhhhhhhhhhHhhhhcccchhheeeeecccc
Confidence            356899776  7888887665  667899999999999999999999999998   89999999999864

>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*

Probab=97.98  E-value=1.8e-08  Score=72.40  Aligned_cols=36  Identities=36%  Similarity=0.614  Sum_probs=32.9

Q ss_pred             HHHHHHHhhHHhHhhhhHHHHh---HHHhhhhhhhhhhh
Q 032560           76 LLQKYLKKSEENKAKNDKERMD---SYYKRNYKDYFDFI  111 (138)
Q Consensus        76 lIq~ylkKSeeNKekNDKERLd---~yYkRnY~dyF~~~  111 (138)
                      +|++||+||++|||.|||+||.   ++|.|.|+++|+.-
T Consensus         2 v~~dllaks~aNKeLnDkKRlaTS~ANfaRs~TV~~G~C   40 (85)
T 3lw5_N            2 VIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSC   40 (85)
T ss_dssp             CCCSCSCSSCCCSTTCCCSSCCSSSSSSTTTSSCCCSCS
T ss_pred             cHHHHHHHhhhhhhhhhHHHhhhcccchhheeEeecccc
Confidence            4678999999999999999998   89999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00