Citrus Sinensis ID: 032691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNVGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL
Secondary Structure (PSIPRED)
cccEEEcccHHHHHHHHHccccccccccccccccccHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccHHHHHHHHcccccccEcccccccccHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
maaitasvgtsSITRSVLvhkpsivassspvlglpamavkgkvrcsmeekpskqesktnvGMSASLLAAACAATMSSPAMALVDErmstegtglpfglsnnlLGWILLGVFGLIWALYIpyassldedeesglsl
Flexible Loop (DISEMBL)
maaitasvgtssitrsVLVHkpsivassspvlglpaMAVKGKVRCSmeekpskqesktnvGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYAssldedeesglsl
Low Complexity Region (SEG)
MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNVGmsasllaaacaatmsspamaLVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYAssldedeesglsl
Disordered region (IsUnstruct)
****************VLVH**********************************************LAAACA******************GTGLPFGLSNNLLGWILLGVFGLIWALYIPYA*************
Disordered Region (DISOPRED)
********GTSSITRS**************************************************LAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYAS************
Disordered Region (DISEMBL)
**********SSITRSVLVHKPSIVASSSPVLGLPAMAVKGK*****************VGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASS***********
Disordered Region (DISPRO)
*AAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPS***SKTNVGMSASL*A*******SS**MALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSL**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNVGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q41387	137	Photosystem II reaction c	N/A	no	1.0	0.985	0.700	2e-40
Q39194	133	Photosystem II reaction c	yes	no	0.970	0.984	0.635	9e-36
Q9SPI9	115	Photosystem II reaction c	N/A	no	0.585	0.686	0.432	2e-13
Q5ZBY9	124	Photosystem II reaction c	yes	no	0.718	0.782	0.563	4e-12

>sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 107/137 (78%), Gaps = 2/137 (1%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKT-- 58
           MA ITAS   S + R+ LVH   +  SSSP+LGLP+M  + KV CS+E KPS  E+ T  
Sbjct: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60

Query: 59  NVGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
           N  M ASLLAAA AAT+S+PAMALVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY
Sbjct: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120

Query: 119 IPYASSLDEDEESGLSL 135
             YAS L+EDEESGLSL
Sbjct: 121 FVYASGLEEDEESGLSL 137

Stabilizes dimeric photosytem II (PSII). In its absence not dimeric PSII accumulates and there is a reduction of monomeric PSII.
Spinacia oleracea (taxid: 3562)

>sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2

 Score =  148 bits (374), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 87/137 (63%), Positives = 98/137 (71%), Gaps = 6/137 (4%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTN 59
           MA+ TAS  T S  R  L+ KP+ VA S+PVLGLP M  K G VRCSME   +KQ + + 
Sbjct: 1   MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSV 56

Query: 60  VGMSASLLAAACAA-TMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
           +G   S  A A     MS+PAMALVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIW  +
Sbjct: 57  MGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFF 116

Query: 119 IPYASSLDEDEESGLSL 135
             Y SSL+EDEESGLSL
Sbjct: 117 FVYTSSLEEDEESGLSL 133

Stabilizes dimeric photosytem II (PSII). In its absence no dimeric PSII accumulates and there is a reduction of monomeric PSII.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii GN=psbW PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 2/81 (2%)

Query: 57  KTNVGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWA 116
           ++ V    ++L+   A   + PA ALVDERM+ +GTG PFG+++ +LGW+LLGVFG +WA
Sbjct: 35  RSEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWA 94

Query: 117 LYIPYASSLD--EDEESGLSL 135
           ++      L   ED + GL L
Sbjct: 95  IWFIGQKDLGDFEDADDGLKL 115

Stabilizes dimeric photosytem II (PSII). In its absence there is a reduction of monomeric PSII.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 70/103 (67%), Gaps = 6/103 (5%)

Query: 32  LGLPAMAVKG--KVRCSMEEKPSKQESKTNVGMSASLLAAACAATMSSPAMALVDERMST 89
           LGLP M  +   +VRC+     SK+ +     +  +  +    A  ++PAMALVDERMST
Sbjct: 22  LGLPQMRARRSERVRCNY----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMST 77

Query: 90  EGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESG 132
           EGTGL  GLSNNLLGWILLGVFGLIW+LY  Y S L+EDEESG
Sbjct: 78  EGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

Stabilizes dimeric photosytem II (PSII). In its absence no dimeric PSII accumulates and there is a reduction of monomeric PSII.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
224062236	134	hypothetical protein POPTRDRAFT_830089 [	0.992	1.0	0.733	3e-48
118489315	133	unknown [Populus trichocarpa x Populus d	0.985	1.0	0.718	8e-47
351727755	132	uncharacterized protein LOC100306223 [Gl	0.977	1.0	0.777	5e-44
224085585	134	hypothetical protein POPTRDRAFT_715100 [	0.896	0.902	0.747	5e-44
255559939	132	Photosystem II reaction center W protein	0.970	0.992	0.676	6e-43
225437235	135	PREDICTED: photosystem II reaction cente	1.0	1.0	0.703	1e-41
388518217	132	unknown [Lotus japonicus]	0.970	0.992	0.691	2e-41
217071582	136	unknown [Medicago truncatula]	1.0	0.992	0.698	3e-41
388494682	136	unknown [Medicago truncatula]	1.0	0.992	0.691	3e-40
388502126	136	unknown [Lotus japonicus] gi|388511197|g	1.0	0.992	0.735	2e-39

>gi|224062236|ref|XP_002300801.1| hypothetical protein POPTRDRAFT_830089 [Populus trichocarpa] gi|222842527|gb|EEE80074.1| hypothetical protein POPTRDRAFT_830089 [Populus trichocarpa]

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/135 (73%), Positives = 112/135 (82%), Gaps = 1/135 (0%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
           MA ITAS  TSSI R+ L H+PS+  SSS VLGLPA+A KGKV CSME KP+ +E K+  
Sbjct: 1   MATITASTATSSIVRAALAHRPSVGVSSSHVLGLPAIAKKGKVSCSMEGKPTVEEEKSK- 59

Query: 61  GMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIP 120
           GMSASL+AA CAAT+SSPA+ALVDERMSTEGTGLPFGLSNNLL WILLGVF  IW+LY  
Sbjct: 60  GMSASLMAAVCAATISSPALALVDERMSTEGTGLPFGLSNNLLVWILLGVFAFIWSLYFV 119

Query: 121 YASSLDEDEESGLSL 135
           Y SSLDEDE+SG+SL
Sbjct: 120 YTSSLDEDEDSGMSL 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489315|gb|ABK96462.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 110/135 (81%), Gaps = 2/135 (1%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
           MA ITAS  TSSI R+ L H+PS+  SSS VLGLPA+A KGKV CSME KP+ +E     
Sbjct: 1   MATITASTATSSIVRAALAHRPSVGVSSSHVLGLPAIAKKGKVSCSMEGKPTVEEKSK-- 58

Query: 61  GMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIP 120
           GMSASL+AA CAAT+SSPA+ALVDER+STEGTGLPFGLSNNLL WILLGVF  IW+LY  
Sbjct: 59  GMSASLMAAVCAATISSPALALVDERLSTEGTGLPFGLSNNLLVWILLGVFAFIWSLYFV 118

Query: 121 YASSLDEDEESGLSL 135
           Y SSLDEDE+SG+SL
Sbjct: 119 YTSSLDEDEDSGMSL 133

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727755|ref|NP_001235636.1| uncharacterized protein LOC100306223 [Glycine max] gi|255627917|gb|ACU14303.1| unknown [Glycine max]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 105/135 (77%), Positives = 114/135 (84%), Gaps = 3/135 (2%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
           MA I A + T+SITR+ LV K  + ASSS VLGLPAMA  GKVRCSMEEKPS   S +N+
Sbjct: 1   MATIIAGIPTTSITRAGLVLKRPVGASSSTVLGLPAMAKAGKVRCSMEEKPS---SSSNI 57

Query: 61  GMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIP 120
           GM ASLLAAA AATMSSPAMALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIWALY  
Sbjct: 58  GMGASLLAAAVAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFV 117

Query: 121 YASSLDEDEESGLSL 135
           YAS+L+EDEESGLSL
Sbjct: 118 YASTLEEDEESGLSL 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085585|ref|XP_002307627.1| hypothetical protein POPTRDRAFT_715100 [Populus trichocarpa] gi|118486017|gb|ABK94852.1| unknown [Populus trichocarpa] gi|222857076|gb|EEE94623.1| hypothetical protein POPTRDRAFT_715100 [Populus trichocarpa]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/123 (74%), Positives = 103/123 (83%), Gaps = 2/123 (1%)

Query: 13  ITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNVGMSASLLAAACA 72
           + R+ LVHKPS+  S SPVLGLPAMA KG+V CSME KPS +E     GMSASL+AA CA
Sbjct: 14  LVRAALVHKPSLGVSCSPVLGLPAMAKKGRVSCSMEGKPSVEEKCK--GMSASLMAAVCA 71

Query: 73  ATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESG 132
           A+MSSPA+ALVDERMSTEGTGLPFGLSNNLL WILLGVF LIWALY  Y ++L+EDEESG
Sbjct: 72  ASMSSPALALVDERMSTEGTGLPFGLSNNLLVWILLGVFALIWALYFTYTATLEEDEESG 131

Query: 133 LSL 135
           LSL
Sbjct: 132 LSL 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559939|ref|XP_002520988.1| Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis] gi|223539825|gb|EEF41405.1| Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 92/136 (67%), Positives = 108/136 (79%), Gaps = 5/136 (3%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTN 59
           MA I AS  TSSITR+  VHK S   ++S  L LPAMA+K G VRC M+E    Q+S++N
Sbjct: 1   MATIFASTPTSSITRANFVHKSSSGITTSRNLDLPAMAMKRGSVRCCMDE----QQSRSN 56

Query: 60  VGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
            GMSASL+A+ C  TMSSPA+ALVDER+STEGTGLPFGLSNNLLGWILLGVFGLIW+ Y 
Sbjct: 57  KGMSASLIASICGVTMSSPALALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWSFYT 116

Query: 120 PYASSLDEDEESGLSL 135
            Y S+LD+DE+SGLSL
Sbjct: 117 VYTSTLDDDEDSGLSL 132

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437235|ref|XP_002282059.1| PREDICTED: photosystem II reaction center W protein, chloroplastic [Vitis vinifera] gi|297735504|emb|CBI17944.3| unnamed protein product [Vitis vinifera]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/135 (70%), Positives = 108/135 (80%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
           MA+ITAS  TSS+ R  L      V +SS +LGLP MA KG+V CSM+EKPS ++    +
Sbjct: 1   MASITASTPTSSLPRVGLRPNGGTVGTSSAILGLPVMAKKGRVTCSMKEKPSVEDGSLKM 60

Query: 61  GMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIP 120
           GM ASL+AAACAATMSSPAMALVDERMSTEGTGLPFGLSNN LGWIL GVFGLIWALY  
Sbjct: 61  GMGASLMAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNTLGWILFGVFGLIWALYFV 120

Query: 121 YASSLDEDEESGLSL 135
           Y ++L+EDEESGLSL
Sbjct: 121 YTATLEEDEESGLSL 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518217|gb|AFK47170.1| unknown [Lotus japonicus]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 108/136 (79%), Gaps = 5/136 (3%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRC-SMEEKPSKQESKTN 59
           M  I +   TSSIT + LV K  +  SSS V+GLPAMA  G+VRC SME K    ES++N
Sbjct: 1   MTTIMSGTPTSSITGTGLVQKQPLGVSSSTVMGLPAMAKVGRVRCCSMEGK----ESRSN 56

Query: 60  VGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
           +GM ASL+AA  AATMSSPA+ALVDER+STEGTGLPFGLSNNLLGWILLGVFGLIWA YI
Sbjct: 57  MGMGASLIAATLAATMSSPAIALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWANYI 116

Query: 120 PYASSLDEDEESGLSL 135
            Y S+LDED++SGLSL
Sbjct: 117 VYTSTLDEDDDSGLSL 132

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071582|gb|ACJ84151.1| unknown [Medicago truncatula]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 95/136 (69%), Positives = 108/136 (79%), Gaps = 1/136 (0%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
           MA I A   TSSI R+  VHK  +  SS  V+GLP++A  G+VRCS+E KP  Q S +N+
Sbjct: 1   MATIIAGTSTSSIIRTSFVHKQPLGVSSHTVVGLPSIAKVGRVRCSIEGKPDVQGSSSNI 60

Query: 61  GMSASLLAAACAATMSSPA-MALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
           GM ASL+AA  AAT+SSPA MALVDERMSTEGTGLPFGLSNNLLGW+L GVFGLIWALY 
Sbjct: 61  GMGASLIAAISAATLSSPAAMALVDERMSTEGTGLPFGLSNNLLGWLLFGVFGLIWALYF 120

Query: 120 PYASSLDEDEESGLSL 135
            YASSLDEDE+SGLSL
Sbjct: 121 IYASSLDEDEDSGLSL 136

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494682|gb|AFK35407.1| unknown [Medicago truncatula]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 107/136 (78%), Gaps = 1/136 (0%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
           MA I A   TSSI R+  VHK  +  SS  V+GLP++A  G+V CS+E KP  Q S +N+
Sbjct: 1   MATIIAGTSTSSIIRTSFVHKQPLGVSSHTVVGLPSIAKVGRVGCSIEGKPDVQGSSSNI 60

Query: 61  GMSASLLAAACAATMSSPA-MALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
           GM ASL+AA  AAT+SSPA MALVDERMSTEGTGLPFGLSNNLLGW+L GVFGLIWALY 
Sbjct: 61  GMGASLIAAISAATLSSPAAMALVDERMSTEGTGLPFGLSNNLLGWLLFGVFGLIWALYF 120

Query: 120 PYASSLDEDEESGLSL 135
            YASSLDEDE+SGLSL
Sbjct: 121 IYASSLDEDEDSGLSL 136

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502126|gb|AFK39129.1| unknown [Lotus japonicus] gi|388511197|gb|AFK43660.1| unknown [Lotus japonicus]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/136 (73%), Positives = 112/136 (82%), Gaps = 1/136 (0%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTNV 60
           MA I+A++ T SITR+ LV K  +V SSSPVLGLPA+A  G+VRCSME KPS QES + +
Sbjct: 1   MATISATITTPSITRAGLVQKRPLVISSSPVLGLPALAKVGRVRCSMEGKPSGQESSSKM 60

Query: 61  GMSASLLAAACAATMSSPAMA-LVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
           GM ASL+AAA AA MSSPA   LVDER+STEGTGLPFGLSNNLLGWIL GVFGLIWA+Y 
Sbjct: 61  GMGASLMAAASAAAMSSPAAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAVYF 120

Query: 120 PYASSLDEDEESGLSL 135
            YAS LDEDEESGLSL
Sbjct: 121 VYASGLDEDEESGLSL 136

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:2064407	133	PSBW "AT2G30570" [Arabidopsis	0.866	0.879	0.536	4.6e-25

TAIR|locus:2064407 PSBW "AT2G30570" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 66/123 (53%), Positives = 75/123 (60%)

Query:     1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTN 59
             MA+ TAS  T S  R  L+ KP+ VA S+PVLGLP M  K G VRCSME   +KQ + + 
Sbjct:     1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSV 56

Query:    60 VGXXXXXXXXXXXXXXXXX-XXXLVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
             +G                     LVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIW  +
Sbjct:    57 MGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFF 116

Query:   119 IPY 121
               Y
Sbjct:   117 FVY 119


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      135       102   0.00091  102 3  11 22  0.43    30
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  528 (56 KB)
  Total size of DFA:  101 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.87u 0.09s 9.96t   Elapsed:  00:00:01
  Total cpu time:  9.87u 0.09s 9.96t   Elapsed:  00:00:01
  Start:  Thu May  9 22:15:19 2013   End:  Thu May  9 22:15:20 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA

GO:0009523 "photosystem II" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0042549 "photosystem II stabilization" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZBY9	PSBW_ORYSJ	No assigned EC number	0.5631	0.7185	0.7822	yes	no
Q41387	PSBW_SPIOL	No assigned EC number	0.7007	1.0	0.9854	N/A	no
Q39194	PSBW_ARATH	No assigned EC number	0.6350	0.9703	0.9849	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
PLN00092	137	PLN00092, PLN00092, photosystem I reaction center	2e-65
pfam07123	136	pfam07123, PsbW, Photosystem II reaction centre W	2e-41
PLN00077	128	PLN00077, PLN00077, photosystem II reaction centre	4e-32
PLN00082	67	PLN00082, PLN00082, photosystem II reaction centre	3e-24

>gnl|CDD|177712 PLN00092, PLN00092, photosystem I reaction center subunit V (PsaG); Provisional

 Score =  194 bits (495), Expect = 2e-65
 Identities = 105/137 (76%), Positives = 118/137 (86%), Gaps = 2/137 (1%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTN 59
           MA ITAS  T+S+ R+ LVHKPS+  +SSPVLGLPAMA K G+VRCSMEEKPS Q+  +N
Sbjct: 1   MATITASTPTTSLVRAALVHKPSVGITSSPVLGLPAMAKKKGRVRCSMEEKPSVQDKSSN 60

Query: 60  VGMSASLLAAACAATMS-SPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
           +GM ASL+AAACA  MS SPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIW+LY
Sbjct: 61  MGMGASLMAAACAVAMSASPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWSLY 120

Query: 119 IPYASSLDEDEESGLSL 135
             Y S+L+EDEESGLSL
Sbjct: 121 FVYTSTLEEDEESGLSL 137

Length = 137

>gnl|CDD|219302 pfam07123, PsbW, Photosystem II reaction centre W protein (PsbW)

 Score =  133 bits (337), Expect = 2e-41
 Identities = 70/137 (51%), Positives = 89/137 (64%), Gaps = 3/137 (2%)

Query: 1   MAAITASV-GTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKTN 59
           MAA+ AS   T    R++        A  SPV GLP++  + KV+ S+E KP  Q +   
Sbjct: 1   MAAVAASASVTRVAARALASSSSGFAAILSPVAGLPSLRARKKVQASIERKP-VQATPQE 59

Query: 60  VGMSASLLAAACA-ATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALY 118
            G   + LAAA + A  + PA+ALVDERM+TEGTGLP GL++  LGWIL GVFGLIW+LY
Sbjct: 60  KGKGVAGLAAAASSAATALPALALVDERMNTEGTGLPLGLNDGALGWILAGVFGLIWSLY 119

Query: 119 IPYASSLDEDEESGLSL 135
             Y  SL+EDE+SGLSL
Sbjct: 120 FIYTKSLEEDEDSGLSL 136

This family consists of several plant specific photosystem II reaction centre W (PsbW) proteins. PsbW is a nuclear-encoded protein located in the thylakoid membrane of the chloroplast. PsbW is a core component of photosystem II but not photosystem I. This family does not appear to be related to pfam03912. Length = 136

>gnl|CDD|215050 PLN00077, PLN00077, photosystem II reaction centre W protein; Provisional

 Score =  110 bits (275), Expect = 4e-32
 Identities = 68/137 (49%), Positives = 87/137 (63%), Gaps = 11/137 (8%)

Query: 1   MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKG-KVRCSMEEKPSKQESKTN 59
           MA ++A+  T  + R+           + PVLGLP +  +  +VRCS E+K + +     
Sbjct: 1   MATVSAAAATCVVARAAA---------ARPVLGLPQLRARSERVRCSYEKKAANKADVNK 51

Query: 60  VGMSASLLAAACAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYI 119
           +  ++ L+ +A     + PA ALVDERMSTEGTGL  GLSNNLLGWILLGVFGLIW+LY 
Sbjct: 52  LAGASLLVTSAATMAYAHPAFALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYT 111

Query: 120 PYASSLDEDEE-SGLSL 135
            Y S L EDEE SGLSL
Sbjct: 112 TYTSDLPEDEEDSGLSL 128

Length = 128

>gnl|CDD|215051 PLN00082, PLN00082, photosystem II reaction centre W protein (PsbW); Provisional

 Score = 88.0 bits (218), Expect = 3e-24
 Identities = 44/67 (65%), Positives = 53/67 (79%), Gaps = 3/67 (4%)

Query: 72  AATM--SSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDE-D 128
           AATM  + PA+ALVDER+STEGTGL  G+SN  L WIL+GV  LIWALY  Y+S+L E D
Sbjct: 1   AATMAYAHPALALVDERLSTEGTGLGLGVSNGKLTWILVGVTALIWALYFSYSSTLPEGD 60

Query: 129 EESGLSL 135
           ++SGLSL
Sbjct: 61  DDSGLSL 67

Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
PLN00092	137	photosystem I reaction center subunit V (PsaG); Pr	100.0
PF07123	138	PsbW: Photosystem II reaction centre W protein (Ps	100.0
PLN00077	128	photosystem II reaction centre W protein; Provisio	100.0
PLN00082	67	photosystem II reaction centre W protein (PsbW); P	100.0

>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional

Probab=100.00  E-value=2.2e-65  Score=392.16  Aligned_cols=135  Identities=78%  Similarity=1.191  Sum_probs=130.1

Q ss_pred             CceeeccccccceecceecccCcccccCCCccCccccc-ccceeeeeeccCCCccccccccchhHHHHHHHHHhccc-cc
Q 032691            1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMA-VKGKVRCSMEEKPSKQESKTNVGMSASLLAAACAATMS-SP   78 (135)
Q Consensus         1 Mati~a~~~t~s~~ra~~~~~~~~~~ss~pv~GLP~m~-~~~~vrCs~~~K~~~~~~~~~~g~~asl~Aaa~aa~~a-~P   78 (135)
                      ||||+|+++|++++|++++||+++++|++||+|||+|+ |+|||||++|+||+.+++..++||+|+++|++++++++ +|
T Consensus         1 MAtitas~~t~~~~ra~~~~k~~~~~s~~~vlGLPam~~~~g~v~Cs~e~k~~~~~~~~~~g~~asl~Aaa~a~a~~a~P   80 (137)
T PLN00092          1 MATITASTPTTSLVRAALVHKPSVGITSSPVLGLPAMAKKKGRVRCSMEEKPSVQDKSSNMGMGASLMAAACAVAMSASP   80 (137)
T ss_pred             CceEeccCccccchhhhhcccCCcccccCcccCCchhcccCceeEEecccCccccccccccchhHHHHHHHHHHHhhcCc
Confidence            99999999999999999999999999999999999999 57999999999999988899999999999999775555 99


Q ss_pred             chhhhhhcccCCCCCcccccccchhHHHHHHHHHHHHHHHHhhcCcCCCCCCCCCCC
Q 032691           79 AMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL  135 (135)
Q Consensus        79 A~ALVDeRlsteGTGl~lGlsn~~LgwILlgVf~liW~ly~~~~~~l~edddSGLsL  135 (135)
                      |||||||||||||||||||||||+|||||+|||+|||++||+|+++++|||||||||
T Consensus        81 A~AlVDeRlsteGTGlplGlsn~~LgwIL~gVf~lIWslYf~~~~~l~edeDSGLsL  137 (137)
T PLN00092         81 AMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWSLYFVYTSTLEEDEESGLSL  137 (137)
T ss_pred             HHHHHHHhhcCCCccccccccCcchhhHHHhHHHHHHHHHheeecccCccccccccC
Confidence            999999999999999999999999999999999999999999999999999999997

>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=6.1e-60  Score=362.57  Aligned_cols=135  Identities=67%  Similarity=1.022  Sum_probs=127.4

Q ss_pred             Cceeecccc-ccceecceecccCcccccCCCccCcccccccceeeeeeccCCCccccc-cccchhHHHHHHHHH-hcccc
Q 032691            1 MAAITASVG-TSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESK-TNVGMSASLLAAACA-ATMSS   77 (135)
Q Consensus         1 Mati~a~~~-t~s~~ra~~~~~~~~~~ss~pv~GLP~m~~~~~vrCs~~~K~~~~~~~-~~~g~~asl~Aaa~a-a~~a~   77 (135)
                      ||+|++++. |+++.|+...+++.....++|++|||+|++|.||+|++|+|+++++.. .++||++++++++++ +++++
T Consensus         1 MAti~a~~~~t~~~~ra~~~~~~~~~~~~~~~~glp~~~~r~~v~cs~~~~~~~~~~~~~~~~~~a~~~aa~~a~~a~a~   80 (138)
T PF07123_consen    1 MATIAASASVTSVVARALLRSSSSAAASSSPVLGLPAMRARRRVRCSAEKKPSTVAAVNSQKGMGAALLAAAAATAATAS   80 (138)
T ss_pred             CceeeecccchhhhhhhhhccCcccceecccccCCCccccccceEEEeccCccchhhhhhhcchhHHHHHHHHHHHhhcC
Confidence            999999998 999999999999989999999999999999999999999999876554 788999999998866 67799


Q ss_pred             cchhhhhhcccCCCCCcccccccchhHHHHHHHHHHHHHHHHhhcCcCCCCCCCCCCC
Q 032691           78 PAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDEDEESGLSL  135 (135)
Q Consensus        78 PA~ALVDeRlsteGTGl~lGlsn~~LgwILlgVf~liW~ly~~~~~~l~edddSGLsL  135 (135)
                      ||||||||||||||||||||||||+|||||+|||+|||+|||+|+|+|+|||||||||
T Consensus        81 PA~ALVDeRlsteGTGL~lGlsn~~LgwIL~gVf~lIWslY~~~~~~l~ededSGLsL  138 (138)
T PF07123_consen   81 PALALVDERLSTEGTGLPLGLSNNLLGWILLGVFGLIWSLYFVYTSTLDEDEDSGLSL  138 (138)
T ss_pred             cHHHHHHHHhcCCCccccccccCchhHHHHHHHHHHHHHHHHhhccccCCCcccCcCC
Confidence            9999999999999999999999999999999999999999999999999999999997

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II

>PLN00077 photosystem II reaction centre W protein; Provisional

Probab=100.00  E-value=6.2e-58  Score=348.09  Aligned_cols=125  Identities=56%  Similarity=0.931  Sum_probs=115.1

Q ss_pred             CceeeccccccceecceecccCcccccCCCccCccccc-ccceeeeeeccCCCccccccccchhHHHHHHHH-Hhccccc
Q 032691            1 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMA-VKGKVRCSMEEKPSKQESKTNVGMSASLLAAAC-AATMSSP   78 (135)
Q Consensus         1 Mati~a~~~t~s~~ra~~~~~~~~~~ss~pv~GLP~m~-~~~~vrCs~~~K~~~~~~~~~~g~~asl~Aaa~-aa~~a~P   78 (135)
                      ||||+|+++|++++|++         .+.||+|||+|+ |++||||+||+|++++ +..++||+++++++++ ++++++|
T Consensus         1 mat~~as~~t~~~~raa---------~s~pvlGLP~l~~~~~~v~Cs~e~k~~~~-~~~~~~~~asl~a~~~a~~a~a~P   70 (128)
T PLN00077          1 MATVSAAAATCVVARAA---------AARPVLGLPQLRARSERVRCSYEKKAANK-ADVNKLAGASLLVTSAATMAYAHP   70 (128)
T ss_pred             Ccceeccccchhhhhhh---------hcCcccCchhhhccCCceEEecccCcccc-cccccchhHHHHHHHHHHHhcccc
Confidence            99999999999999997         245799999999 6799999999999864 6678999999999886 5889999


Q ss_pred             chhhhhhcccCCCCCcccccccchhHHHHHHHHHHHHHHHHhhcCcCCCC-CCCCCCC
Q 032691           79 AMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDED-EESGLSL  135 (135)
Q Consensus        79 A~ALVDeRlsteGTGl~lGlsn~~LgwILlgVf~liW~ly~~~~~~l~ed-ddSGLsL  135 (135)
                      |||||||||||||||||||||||+|||||+|||+|||++||+|+|+++|| |||||||
T Consensus        71 A~AlVDeRlsteGtGl~lGlsn~~LgwIL~gVf~liw~ly~~~~~~l~~~edDsGLsL  128 (128)
T PLN00077         71 AFALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTTYTSDLPEDEEDSGLSL  128 (128)
T ss_pred             HHHHHhHhhcCCCccccccccCchhhHHHHhHHHHHHHHHhheecccCCccccccccC
Confidence            99999999999999999999999999999999999999999999999775 4599997

>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional

Probab=100.00  E-value=2.3e-39  Score=224.79  Aligned_cols=64  Identities=63%  Similarity=1.053  Sum_probs=61.7

Q ss_pred             HhcccccchhhhhhcccCCCCCcccccccchhHHHHHHHHHHHHHHHHhhcCcCCC-CCCCCCCC
Q 032691           72 AATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYASSLDE-DEESGLSL  135 (135)
Q Consensus        72 aa~~a~PA~ALVDeRlsteGTGl~lGlsn~~LgwILlgVf~liW~ly~~~~~~l~e-dddSGLsL  135 (135)
                      ++++++||+||||||||||||||||||||++|||||+|||++||++||+|+++++| ||||||||
T Consensus         3 ~~a~a~PA~AlVDeRlsteGtGl~lGls~~~LgwIL~gvf~liw~ly~~~~~~l~~~deDsGLsL   67 (67)
T PLN00082          3 TMAYAHPALALVDERLSTEGTGLGLGVSNGKLTWILVGVTALIWALYFSYSSTLPEGDDDSGLSL   67 (67)
T ss_pred             hhhhcCcHHHHHHHHhcCCCccccccccCchhhhHHHHHHHHHHHHHhheecccCCCCcccCccC
Confidence            46788999999999999999999999999999999999999999999999999987 99999997

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00