Citrus Sinensis ID: 033093

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MAKAAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSNPETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKEKTFDVTDFPPVFLTGAVEEDINAVGGGYQK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHcccEEEcccccccccccccccHHHHcccccccccEEEccccccccEEEEEEEEccccccccccccEEccHHHHHHHHHHccccccccccccccccEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccHHHHcccccccccEEEEccccccEEEEEEEEcccccccccccEEEEccccHHHHHHHHcccccccccccEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
MAKAAATSLFQNLRRFIkkpweitgvcsdpeymgplrkaaeyrvrcpatpeqqaiiptsnpetvydikyysrdqrrnrppirrTILKKADVEKMMkektfdvtdfppvfltgaveedinavgggyqk
Flexible Loop (DISEMBL)
MAKAAATSLFQNlrrfikkpweitgvcsdpeyMGPLRKAAEYRVRCPAtpeqqaiiptsnpetvydikyysrdqrrnrppirrtilkkadvekmmkektfdvtdfppvfltgaveedinavgggyqk
Low Complexity Region (SEG)
MAKAAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSNPETVYDIKYYSrdqrrnrppirrTILKKADVEKMMKEKTFDVTDFPPVFLTGAVEEDINAVGGGYQK
Disordered region (IsUnstruct)
********LFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPAT***QAIIPTSNPETVYDIKYYS*************IL********MKEKTFDVTDFPPVFLTGAVEEDINAV******
Disordered Region (DISOPRED)
**********QNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSNPETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKEKTFDVTDFPPVFLTGAVEEDIN*V******
Disordered Region (DISEMBL)
MAKAAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSNPETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKEKTFDVTDFPPVFLTGAVEEDINAVGGGYQK
Disordered Region (DISPRO)
****AATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSNPETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKEKTFDVTDFPPVFLTGAVEEDINAV******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKAAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSNPETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKEKTFDVTDFPPVFLTGAVEEDINAVGGGYQK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
255547169	129	conserved hypothetical protein [Ricinus	0.992	0.976	0.767	2e-50
359491762	144	PREDICTED: uncharacterized protein LOC10	0.992	0.875	0.746	1e-48
359491764	128	PREDICTED: uncharacterized protein LOC10	0.992	0.984	0.746	2e-48
356562636	126	PREDICTED: uncharacterized protein LOC10	0.992	1.0	0.722	5e-48
449439331	126	PREDICTED: uncharacterized protein LOC10	0.992	1.0	0.740	3e-47
356511774	126	PREDICTED: uncharacterized protein LOC10	0.992	1.0	0.674	2e-44
147856951	1110	hypothetical protein VITISV_021414 [Viti	0.874	0.1	0.738	2e-44
297806843	131	hypothetical protein ARALYDRAFT_487638 [	1.0	0.969	0.648	3e-42
15241510	131	uncharacterized protein [Arabidopsis tha	1.0	0.969	0.625	2e-41
21592443	131	unknown [Arabidopsis thaliana]	1.0	0.969	0.625	2e-41

>gi|255547169|ref|XP_002514642.1| conserved hypothetical protein [Ricinus communis] gi|223546246|gb|EEF47748.1| conserved hypothetical protein [Ricinus communis]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/129 (76%), Positives = 109/129 (84%), Gaps = 3/129 (2%)

Query: 1   MAK---AAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIP 57
           MAK   AA +SL Q L+RFIKKPWEITG C+DPEY   +    EYRV CPATP+ +AI+P
Sbjct: 1   MAKPTTAATSSLLQTLKRFIKKPWEITGPCADPEYRSAIPSPLEYRVNCPATPKIKAIVP 60

Query: 58  TSNPETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKEKTFDVTDFPPVFLTGAVEED 117
           TSNPETVYDIKYY+RDQRRNRPPI RTILKKADVEK+MKEKTFDVTDFPPV+LT AVEED
Sbjct: 61  TSNPETVYDIKYYTRDQRRNRPPIIRTILKKADVEKLMKEKTFDVTDFPPVYLTAAVEED 120

Query: 118 INAVGGGYQ 126
            NA GGGYQ
Sbjct: 121 YNARGGGYQ 129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491762|ref|XP_002266495.2| PREDICTED: uncharacterized protein LOC100260307 isoform 1 [Vitis vinifera]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 105/126 (83%)

Query: 2   AKAAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSNP 61
           A +   S+FQNL+RF KKPWEITG CSDPE+   L +A EYR  CPATP Q+A IP+SNP
Sbjct: 19  ASSTFKSVFQNLKRFFKKPWEITGPCSDPEFRPSLPRALEYRPFCPATPNQKACIPSSNP 78

Query: 62  ETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKEKTFDVTDFPPVFLTGAVEEDINAV 121
           ETVYDIKY++RDQRRNRPPIRRTILKK DVEKMMKEKTFDV+DFP V+LT  VEED NA 
Sbjct: 79  ETVYDIKYFTRDQRRNRPPIRRTILKKPDVEKMMKEKTFDVSDFPRVYLTAKVEEDYNAR 138

Query: 122 GGGYQK 127
           GGGYQK
Sbjct: 139 GGGYQK 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491764|ref|XP_003634319.1| PREDICTED: uncharacterized protein LOC100260307 isoform 2 [Vitis vinifera]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 105/126 (83%)

Query: 2   AKAAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSNP 61
           A +   S+FQNL+RF KKPWEITG CSDPE+   L +A EYR  CPATP Q+A IP+SNP
Sbjct: 3   ASSTFKSVFQNLKRFFKKPWEITGPCSDPEFRPSLPRALEYRPFCPATPNQKACIPSSNP 62

Query: 62  ETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKEKTFDVTDFPPVFLTGAVEEDINAV 121
           ETVYDIKY++RDQRRNRPPIRRTILKK DVEKMMKEKTFDV+DFP V+LT  VEED NA 
Sbjct: 63  ETVYDIKYFTRDQRRNRPPIRRTILKKPDVEKMMKEKTFDVSDFPRVYLTAKVEEDYNAR 122

Query: 122 GGGYQK 127
           GGGYQK
Sbjct: 123 GGGYQK 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562636|ref|XP_003549575.1| PREDICTED: uncharacterized protein LOC100803217 [Glycine max]

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 107/126 (84%)

Query: 1   MAKAAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSN 60
           MAK+A+ SL Q+L+RFIKKPWEITG C+DPEY   L  A EYR+ CPAT +++ IIP S 
Sbjct: 1   MAKSASNSLMQSLKRFIKKPWEITGPCADPEYKSALPLAVEYRLSCPATVKEKPIIPNSL 60

Query: 61  PETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKEKTFDVTDFPPVFLTGAVEEDINA 120
           PETVYDIKY++RDQRRNRPPIRRT+LKK DVEK+MKE+TF V+DFPPV+L  AVEEDINA
Sbjct: 61  PETVYDIKYFTRDQRRNRPPIRRTVLKKPDVEKLMKEQTFAVSDFPPVYLNSAVEEDINA 120

Query: 121 VGGGYQ 126
            GGGYQ
Sbjct: 121 RGGGYQ 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439331|ref|XP_004137439.1| PREDICTED: uncharacterized protein LOC101204278 isoform 1 [Cucumis sativus] gi|449439333|ref|XP_004137440.1| PREDICTED: uncharacterized protein LOC101204278 isoform 2 [Cucumis sativus] gi|449486930|ref|XP_004157445.1| PREDICTED: uncharacterized protein LOC101227646 isoform 1 [Cucumis sativus] gi|449486932|ref|XP_004157446.1| PREDICTED: uncharacterized protein LOC101227646 isoform 2 [Cucumis sativus]

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 106/127 (83%), Gaps = 1/127 (0%)

Query: 1   MAKAAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSN 60
           MAKAA +SL Q LRR+IKKPWEITG C+DPEY   +  A EYRV CPAT +++AIIPTSN
Sbjct: 1   MAKAA-SSLLQTLRRYIKKPWEITGPCADPEYRSAVPSALEYRVVCPATIKEKAIIPTSN 59

Query: 61  PETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKEKTFDVTDFPPVFLTGAVEEDINA 120
           PETV+DIKYY+RDQRRNRPPIRRTILKK DVEKMMKE  FD  DFP V+LT A+EED+N 
Sbjct: 60  PETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKEIKFDPADFPKVYLTAAIEEDMNT 119

Query: 121 VGGGYQK 127
            GGGYQK
Sbjct: 120 HGGGYQK 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511774|ref|XP_003524598.1| PREDICTED: uncharacterized protein LOC100813454 isoform 1 [Glycine max] gi|356511776|ref|XP_003524599.1| PREDICTED: uncharacterized protein LOC100813454 isoform 2 [Glycine max] gi|356511778|ref|XP_003524600.1| PREDICTED: uncharacterized protein LOC100813454 isoform 3 [Glycine max]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/126 (67%), Positives = 102/126 (80%)

Query: 1   MAKAAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSN 60
           MAK+A+ S+ Q L+RF+KKPWEITG C+ PEY   L  A EYR+ CPAT +++ IIP S 
Sbjct: 1   MAKSASNSVMQTLKRFMKKPWEITGPCAGPEYKSALPLAVEYRLSCPATVKEKPIIPNSL 60

Query: 61  PETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKEKTFDVTDFPPVFLTGAVEEDINA 120
           PETVYDIKY++RDQRRNRPPIRRT+LK  DVEK+MKE+TF  +DFPPV+L   VEEDINA
Sbjct: 61  PETVYDIKYFTRDQRRNRPPIRRTVLKNPDVEKLMKEQTFAFSDFPPVYLNSIVEEDINA 120

Query: 121 VGGGYQ 126
            GGGYQ
Sbjct: 121 RGGGYQ 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856951|emb|CAN81370.1| hypothetical protein VITISV_021414 [Vitis vinifera]

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/111 (73%), Positives = 93/111 (83%)

Query: 2   AKAAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSNP 61
           A +   S+FQNL+RF KKPWEITG CSDPE+   L +A EYR  CPATP Q+A IP+SNP
Sbjct: 3   ASSTFKSVFQNLKRFFKKPWEITGPCSDPEFRPSLPRALEYRPFCPATPNQKACIPSSNP 62

Query: 62  ETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKEKTFDVTDFPPVFLTG 112
           ETVYDIKY++RDQRRNRPPIRRTILKK DVEKMMKEKTFDV+DFP V+LT 
Sbjct: 63  ETVYDIKYFTRDQRRNRPPIRRTILKKPDVEKMMKEKTFDVSDFPRVYLTA 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806843|ref|XP_002871305.1| hypothetical protein ARALYDRAFT_487638 [Arabidopsis lyrata subsp. lyrata] gi|297317142|gb|EFH47564.1| hypothetical protein ARALYDRAFT_487638 [Arabidopsis lyrata subsp. lyrata]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 107/131 (81%), Gaps = 4/131 (3%)

Query: 1   MAKA---AATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIP 57
           MAK+   AA+SL QNLRR+IKKPW+ITG C+ PEY+  + KA EYR+RCPAT +++AI+P
Sbjct: 1   MAKSVSTAASSLVQNLRRYIKKPWQITGPCAHPEYLEAVPKATEYRLRCPATIDEEAIVP 60

Query: 58  TSNPETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKE-KTFDVTDFPPVFLTGAVEE 116
            S+P+TVY+I Y+ RDQRRNRPPIRR ILKK +V +MM E KTFDV+DFP V+LT  VEE
Sbjct: 61  CSDPDTVYNIVYHGRDQRRNRPPIRRYILKKDNVVQMMNEKKTFDVSDFPKVYLTTTVEE 120

Query: 117 DINAVGGGYQK 127
           D++  GGGYQK
Sbjct: 121 DLDTRGGGYQK 131

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241510|ref|NP_196423.1| uncharacterized protein [Arabidopsis thaliana] gi|13877961|gb|AAK44058.1|AF370243_1 unknown protein [Arabidopsis thaliana] gi|6562320|emb|CAB62618.1| putative protein [Arabidopsis thaliana] gi|17065638|gb|AAL33813.1| unknown protein [Arabidopsis thaliana] gi|26452287|dbj|BAC43230.1| unknown protein [Arabidopsis thaliana] gi|332003857|gb|AED91240.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 107/131 (81%), Gaps = 4/131 (3%)

Query: 1   MAKA---AATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIP 57
           MAK+   AA+SL QNLRR+IKKPW+ITG C+ PEY+  + KA EYR+RCPAT +++AI+P
Sbjct: 1   MAKSVSTAASSLVQNLRRYIKKPWQITGPCAHPEYLEAVPKATEYRLRCPATIDEEAIVP 60

Query: 58  TSNPETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKE-KTFDVTDFPPVFLTGAVEE 116
           +S+PETVY+I Y+ RDQRRNRPPIRR +L K +V +MM E K+FDV+DFP V+LT  VEE
Sbjct: 61  SSDPETVYNIVYHGRDQRRNRPPIRRYVLTKDNVVQMMNEKKSFDVSDFPKVYLTTTVEE 120

Query: 117 DINAVGGGYQK 127
           D++  GGGY+K
Sbjct: 121 DLDTRGGGYEK 131

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592443|gb|AAM64394.1| unknown [Arabidopsis thaliana]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 107/131 (81%), Gaps = 4/131 (3%)

Query: 1   MAKA---AATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIP 57
           MAK+   AA+SL QNLRR+IKKPW+ITG C+ PEY+  + KA EYR+RCPAT +++AI+P
Sbjct: 1   MAKSVSTAASSLVQNLRRYIKKPWQITGPCAHPEYLEAVPKATEYRLRCPATIDEEAIVP 60

Query: 58  TSNPETVYDIKYYSRDQRRNRPPIRRTILKKADVEKMMKE-KTFDVTDFPPVFLTGAVEE 116
           +S+PETVY+I Y+ RDQRRN PPIRR +LKK +V +MM E K+FDV+DFP V+LT  VEE
Sbjct: 61  SSDPETVYNIVYHGRDQRRNSPPIRRYVLKKDNVVQMMNEKKSFDVSDFPKVYLTTTVEE 120

Query: 117 DINAVGGGYQK 127
           D++  GGGY+K
Sbjct: 121 DLDTRGGGYEK 131

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
TAIR|locus:2142868	131	AT5G08060 "AT5G08060" [Arabido	1.0	0.969	0.534	2.9e-32

TAIR|locus:2142868 AT5G08060 "AT5G08060" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 70/131 (53%), Positives = 95/131 (72%)

Query:     1 MAKA---AATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIP 57
             MAK+   AA+SL QNLRR+IKKPW+ITG C+ PEY+  + KA EYR+RCPAT +++AI+P
Sbjct:     1 MAKSVSTAASSLVQNLRRYIKKPWQITGPCAHPEYLEAVPKATEYRLRCPATIDEEAIVP 60

Query:    58 TSNPETVYDIKYYSXXXXXXXXXXXXTILKKADVEKMMKEK-TFDVTDFPPVFLTGAVEE 116
             +S+PETVY+I Y+              +L K +V +MM EK +FDV+DFP V+LT  VEE
Sbjct:    61 SSDPETVYNIVYHGRDQRRNRPPIRRYVLTKDNVVQMMNEKKSFDVSDFPKVYLTTTVEE 120

Query:   117 DINAVGGGYQK 127
             D++  GGGY+K
Sbjct:   121 DLDTRGGGYEK 131


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      127       115   0.00091  102 3  11 22  0.50    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  558 (59 KB)
  Total size of DFA:  119 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.70u 0.10s 11.80t   Elapsed:  00:00:00
  Total cpu time:  11.70u 0.10s 11.80t   Elapsed:  00:00:00
  Start:  Fri May 10 14:04:05 2013   End:  Fri May 10 14:04:05 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
PF07347	97	CI-B14_5a: NADH:ubiquinone oxidoreductase subunit	96.43
KOG4630	142	consensus NADH:ubiquinone oxidoreductase, NDUFA7/B	93.5

>PF07347 CI-B14_5a: NADH:ubiquinone oxidoreductase subunit B14

Probab=96.43  E-value=0.0047  Score=45.31  Aligned_cols=62  Identities=29%  Similarity=0.411  Sum_probs=45.6

Q ss_pred             HHHHHHHHhhcCCceeeecCCCCccccccccccccccCCCCCCCceeecCCCCCcceeeeeeeecccccCCCccce
Q 033093            8 SLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSNPETVYDIKYYSRDQRRNRPPIRR   83 (127)
Q Consensus         8 sl~q~l~r~ik~PW~iTGP~S~pEy~~~~p~a~EYR~~sPAs~~~~~~VP~s~pe~VYDIkY~tRD~RRn~~pi~r   83 (127)
                      -++|.||.|+      .|    =++...+--+.   ..|+-|||. +.+|...-+...+.-||+||.||.-.|-.-
T Consensus         2 p~iq~lR~fl------~G----R~~~~~lRy~d---~~s~RTqPp-P~lP~Gp~hkls~NyYy~RD~RRev~PP~~   63 (97)
T PF07347_consen    2 PFIQRLRNFL------LG----RKHKLQLRYAD---TISPRTQPP-PNLPGGPSHKLSANYYYTRDARREVQPPID   63 (97)
T ss_pred             hHHHHHHHHH------cc----ccccccccccc---ccccCCCCC-CCCCCCCccccccccccccccccccCCCeE
Confidence            3678888876      12    24444333332   389999998 999999999999999999999998665443

5a (Complex I-B14.5a); InterPro: IPR009947 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains the eukaryotic NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a). This is approximately 100 residues long, and forms part of a multiprotein complex that resides on the inner mitochondrial membrane [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport, 0005743 mitochondrial inner membrane

>KOG4630 consensus NADH:ubiquinone oxidoreductase, NDUFA7/B14

Probab=93.50  E-value=0.14  Score=40.07  Aligned_cols=65  Identities=29%  Similarity=0.416  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhhcCCceeeecCCCCcccccccccccccc-CCCCCCCceeecCCCCCcceeeeeeeecccccCCCccc
Q 033093            5 AATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAEYRV-RCPATPEQQAIIPTSNPETVYDIKYYSRDQRRNRPPIR   82 (127)
Q Consensus         5 a~ksl~q~l~r~ik~PW~iTGP~S~pEy~~~~p~a~EYR~-~sPAs~~~~~~VP~s~pe~VYDIkY~tRD~RRn~~pi~   82 (127)
                      ++.-|+|.+|-||      +|+-    |.+-+  +.-|-. .||-|||. +.||.......++--|+|||-||+-.|-.
T Consensus         8 vAt~ll~r~Rn~l------~g~~----~qhkl--a~rf~d~~sprTqpp-P~lP~GpshkL~aNYY~TRDgRR~v~pp~   73 (142)
T KOG4630|consen    8 VATVLLQRDRNFL------LGRP----YQHKL--ALRFTDSASPRTQPP-PALPGGPSHKLSANYYCTRDGRREVDPPK   73 (142)
T ss_pred             HHHHHHHHHhhhc------cCcc----ccCcc--cccchhccCcccCCC-CCCCCCcccccccceeeecCCccccCchH
Confidence            3444889999886      4432    43322  222322 68999998 88999999999999999999999876654

5A subunit [Energy production and conversion]

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00