Citrus Sinensis ID: 033124

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRISTET
Secondary Structure (PSIPRED)
cccEEEcccccccccccccccccccEEccccccccEEEEEEcccccccccccccccccccccccccEEEcccHHHHcccccccEEEcccccccccccccccccccccccccEEEEEEccEEEcccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccccccccHHHHccccEEEEEEEEccccccEcccccccccccccccccHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccEEEEEEEEEccccc
Coil and Loop (DISEMBL)
masiysckecgtnlnlntshlypatvyfpagnkgtlsfaMIDSTKFRLEKEDKIRPFFETLDYWgiqrkrtkikcnncgallgyiyddgppavdtpgqfhfgpsqviprypryrlktKALRISTET
Flexible Loop (DISEMBL)
MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKfrlekedkirpffetldywgiqrkrtkikCNNCGALLGYIYDDGPPAVDTPGQFHfgpsqviprypryrlktkalristet
Low Complexity Region (SEG)
MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRISTET
Disordered region (IsUnstruct)
***IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLK**********
Disordered Region (DISOPRED)
*ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCGALLGYIYDDG***********************YRLKTK*LRI****
Disordered Region (DISEMBL)
MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRISTET
Disordered Region (DISPRO)
*ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCGALLGYIYDDGP*****************PRYPRYRLKTKALRI****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRISTET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q9STN5	164	Uncharacterized protein A	no	no	0.944	0.725	0.284	9e-07

>sp|Q9STN5|Y4833_ARATH Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana GN=At4g08330 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 5   YSCKECGTNLNLNTSHLYPATV---YFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETL 61
           YSC  CG  LNL++++   +T+   Y  +   G +SF  ID  +F    E +  P F   
Sbjct: 38  YSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEGRFSQVDEFQCMPHFSRY 97

Query: 62  DYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR 121
             WG+ R RTK+ C  C   +G    +  P      Q     S  I    +Y ++ ++L+
Sbjct: 98  S-WGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSDPTSPRIGSVTKYDIRIRSLQ 156

Query: 122 IST 124
            S+
Sbjct: 157 PSS 159

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
449456857	126	PREDICTED: uncharacterized protein At4g0	1.0	1.0	0.793	2e-56
225431343	126	PREDICTED: uncharacterized protein At4g0	1.0	1.0	0.785	3e-56
449524330	126	PREDICTED: LOW QUALITY PROTEIN: uncharac	1.0	1.0	0.777	7e-55
296084062	139	unnamed protein product [Vitis vinifera]	0.976	0.884	0.780	5e-54
224133588	126	predicted protein [Populus trichocarpa]	1.0	1.0	0.769	4e-53
357483933	126	hypothetical protein MTR_5g022990 [Medic	1.0	1.0	0.730	2e-52
351725921	125	uncharacterized protein LOC100500650 [Gl	0.984	0.992	0.709	3e-50
297832390	127	protein-methionine-s-oxide reductase [Ar	0.984	0.976	0.701	4e-47
79591151	127	uncharacterized protein [Arabidopsis tha	0.992	0.984	0.688	1e-46
125542312	138	hypothetical protein OsI_09916 [Oryza sa	0.944	0.862	0.672	5e-44

>gi|449456857|ref|XP_004146165.1| PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Cucumis sativus]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 114/126 (90%)

Query: 1   MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFET 60
           MASIYSC ECGTNLNLN++HL+P   YF AGNKGTLSF+ IDSTKFRLEKEDK+RPFFET
Sbjct: 1   MASIYSCTECGTNLNLNSTHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60

Query: 61  LDYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKAL 120
           L+YWGIQRKRTK+KCN+CG L+GY+YDDGPP  D+PGQFHFGPSQVIPR PRYR K KAL
Sbjct: 61  LNYWGIQRKRTKLKCNSCGHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120

Query: 121 RISTET 126
           RI++E+
Sbjct: 121 RITSES 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431343|ref|XP_002278070.1| PREDICTED: uncharacterized protein At4g08330, chloroplastic [Vitis vinifera]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 99/126 (78%), Positives = 113/126 (89%)

Query: 1   MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFET 60
           MAS+YSC+ECGTNLNLN +HL+P+  YF AGNKGTLSFA +D+TKFR EKEDKIRPFFET
Sbjct: 1   MASVYSCRECGTNLNLNATHLFPSDFYFDAGNKGTLSFACVDATKFRFEKEDKIRPFFET 60

Query: 61  LDYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKAL 120
           LDYWGIQRKRTKIKCN+CG L+GYIYDDGPP  D+PGQ HFGPSQVIPR PRYR KTK L
Sbjct: 61  LDYWGIQRKRTKIKCNSCGRLVGYIYDDGPPLTDSPGQLHFGPSQVIPRAPRYRFKTKTL 120

Query: 121 RISTET 126
           +I+++T
Sbjct: 121 QIASQT 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524330|ref|XP_004169176.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At4g08330, chloroplastic-like [Cucumis sativus]

 Score =  218 bits (554), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 98/126 (77%), Positives = 112/126 (88%)

Query: 1   MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFET 60
           MA IYSC ECGTNLNLN++HL+P   YF AGNKGTLSF+ IDSTKFRLEKEDK+RPFFET
Sbjct: 1   MAYIYSCTECGTNLNLNSTHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60

Query: 61  LDYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKAL 120
           L+YWGIQRKRTK+KCN+CG L+GY+YDD PP  D+PGQFHFGPSQVIPR PRYR K KAL
Sbjct: 61  LNYWGIQRKRTKLKCNSCGHLVGYVYDDXPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120

Query: 121 RISTET 126
           RI++E+
Sbjct: 121 RITSES 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084062|emb|CBI24450.3| unnamed protein product [Vitis vinifera]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 96/123 (78%), Positives = 109/123 (88%)

Query: 4   IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
            YSC+ECGTNLNLN +HL+P+  YF AGNKGTLSFA +D+TKFR EKEDKIRPFFETLDY
Sbjct: 17  FYSCRECGTNLNLNATHLFPSDFYFDAGNKGTLSFACVDATKFRFEKEDKIRPFFETLDY 76

Query: 64  WGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRIS 123
           WGIQRKRTKIKCN+CG L+GYIYDDGPP  D+PGQ HFGPSQVIPR PRYR KTK L+I+
Sbjct: 77  WGIQRKRTKIKCNSCGRLVGYIYDDGPPLTDSPGQLHFGPSQVIPRAPRYRFKTKTLQIA 136

Query: 124 TET 126
           ++T
Sbjct: 137 SQT 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133588|ref|XP_002327632.1| predicted protein [Populus trichocarpa] gi|222836717|gb|EEE75110.1| predicted protein [Populus trichocarpa]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 97/126 (76%), Positives = 110/126 (87%)

Query: 1   MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFET 60
           MASIY+C ECGTNLNLNT+HLYP   YF AGNKGTLSF+ IDSTKF+ E+EDKIRPFFET
Sbjct: 1   MASIYTCIECGTNLNLNTTHLYPQDFYFEAGNKGTLSFSSIDSTKFKFEEEDKIRPFFET 60

Query: 61  LDYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKAL 120
           ++YWGIQRKRTKIKCN+CG L+GYIYDDG P+  +PGQF  GPSQ IPR PRYR KTKAL
Sbjct: 61  VNYWGIQRKRTKIKCNSCGCLVGYIYDDGQPSTISPGQFGLGPSQAIPRAPRYRFKTKAL 120

Query: 121 RISTET 126
           RI++ET
Sbjct: 121 RIASET 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483933|ref|XP_003612253.1| hypothetical protein MTR_5g022990 [Medicago truncatula] gi|355513588|gb|AES95211.1| hypothetical protein MTR_5g022990 [Medicago truncatula] gi|388495256|gb|AFK35694.1| unknown [Medicago truncatula]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 110/126 (87%)

Query: 1   MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFET 60
           MASIY+C EC TNLNLNTS+ YP   YF AGNK ++SF+ ID+TKF+ EKEDKIRPFFET
Sbjct: 1   MASIYTCSECNTNLNLNTSYTYPPDFYFEAGNKNSISFSTIDATKFKFEKEDKIRPFFET 60

Query: 61  LDYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKAL 120
           ++YWGIQRKRTKIKCNNC  L+GY+YDDGPP ++TPGQFH GPSQVIPR PRYR K+K+L
Sbjct: 61  INYWGIQRKRTKIKCNNCNHLVGYVYDDGPPLINTPGQFHMGPSQVIPRAPRYRFKSKSL 120

Query: 121 RISTET 126
           RI+++T
Sbjct: 121 RITSQT 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725921|ref|NP_001237365.1| uncharacterized protein LOC100500650 [Glycine max] gi|255630855|gb|ACU15790.1| unknown [Glycine max]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 105/124 (84%)

Query: 1   MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFET 60
           MAS+YSC ECG+NLNLN++H YP   YF AGNKG++SF+ +D TKF+ EKEDK+RPFFET
Sbjct: 1   MASVYSCTECGSNLNLNSAHAYPPDFYFEAGNKGSVSFSAVDPTKFKFEKEDKLRPFFET 60

Query: 61  LDYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKAL 120
           ++YWGIQRKRTKIKCN C  LL Y+YDDGPP  ++PGQFH GPSQVIPR PRYR KTK L
Sbjct: 61  VNYWGIQRKRTKIKCNTCDCLLDYVYDDGPPLTNSPGQFHMGPSQVIPRAPRYRFKTKTL 120

Query: 121 RIST 124
           RI++
Sbjct: 121 RITS 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832390|ref|XP_002884077.1| protein-methionine-s-oxide reductase [Arabidopsis lyrata subsp. lyrata] gi|297329917|gb|EFH60336.1| protein-methionine-s-oxide reductase [Arabidopsis lyrata subsp. lyrata]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 87/124 (70%), Positives = 104/124 (83%)

Query: 3   SIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLD 62
           +IY+CKECG++LNLN + L+P   YF AGNKGTLSFA +D+ KFR EKEDKI PFFETL+
Sbjct: 4   TIYTCKECGSDLNLNPNDLFPPDFYFEAGNKGTLSFAAVDAEKFRFEKEDKIMPFFETLN 63

Query: 63  YWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI 122
           YWGIQRKRTKIKCN+C  L+GYIYDDGPP     GQ+ FGPSQVIPR PRYR KTKA+++
Sbjct: 64  YWGIQRKRTKIKCNSCNHLIGYIYDDGPPLTGGIGQYGFGPSQVIPRAPRYRFKTKAVQV 123

Query: 123 STET 126
           S++T
Sbjct: 124 SSQT 127

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79591151|ref|NP_849966.2| uncharacterized protein [Arabidopsis thaliana] gi|41059785|gb|AAR99367.1| hypothetical protein At2g17705 [Arabidopsis thaliana] gi|50058911|gb|AAT69200.1| hypothetical protein At2g17705 [Arabidopsis thaliana] gi|330251577|gb|AEC06671.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 104/125 (83%)

Query: 2   ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETL 61
           ++IY+CKECG++LNLN + L+P   YF AGNKGTLSFA +D+ KFR EKEDKI PFFETL
Sbjct: 3   STIYTCKECGSDLNLNPNDLFPPDFYFEAGNKGTLSFAAVDAEKFRFEKEDKIMPFFETL 62

Query: 62  DYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR 121
           +YWGIQRKRTKIKC +C  L+GYIYDDGPP     GQ+ FGPSQVIPR PRYR KTKA++
Sbjct: 63  NYWGIQRKRTKIKCTSCNHLIGYIYDDGPPLTGGIGQYGFGPSQVIPRAPRYRFKTKAVQ 122

Query: 122 ISTET 126
           +S++T
Sbjct: 123 VSSQT 127

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125542312|gb|EAY88451.1| hypothetical protein OsI_09916 [Oryza sativa Indica Group]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 95/119 (79%)

Query: 5   YSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDYW 64
           Y C ECG +LNL  + LYP  VYF AGNKGTLSF+ +D ++ R   EDKIRPFFETL+YW
Sbjct: 11  YRCAECGADLNLTAAQLYPEGVYFEAGNKGTLSFSWVDESRLRFAPEDKIRPFFETLNYW 70

Query: 65  GIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRIS 123
           GIQRKRT+I C+ CG LLGY+YDDGPPA+D  GQF  GPSQVIPR PRYR+KTKA+ ++
Sbjct: 71  GIQRKRTRISCDACGRLLGYVYDDGPPAMDGTGQFGMGPSQVIPRRPRYRIKTKAVTVA 129

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:504955974	127	AT2G17705 "AT2G17705" [Arabido	1.0	0.992	0.700	1.4e-46
TAIR|locus:2137455	164	AT4G08330 "AT4G08330" [Arabido	0.944	0.725	0.284	9.7e-09
UNIPROTKB|E1C1X3	184	MSRB3 "Uncharacterized protein	0.309	0.211	0.475	0.00066

TAIR|locus:504955974 AT2G17705 "AT2G17705" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 89/127 (70%), Positives = 105/127 (82%)

Query:     1 MAS-IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFE 59
             MAS IY+CKECG++LNLN + L+P   YF AGNKGTLSFA +D+ KFR EKEDKI PFFE
Sbjct:     1 MASTIYTCKECGSDLNLNPNDLFPPDFYFEAGNKGTLSFAAVDAEKFRFEKEDKIMPFFE 60

Query:    60 TLDYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKA 119
             TL+YWGIQRKRTKIKC +C  L+GYIYDDGPP     GQ+ FGPSQVIPR PRYR KTKA
Sbjct:    61 TLNYWGIQRKRTKIKCTSCNHLIGYIYDDGPPLTGGIGQYGFGPSQVIPRAPRYRFKTKA 120

Query:   120 LRISTET 126
             +++S++T
Sbjct:   121 VQVSSQT 127

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2137455 AT4G08330 "AT4G08330" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 35/123 (28%), Positives = 56/123 (45%)

Query:     5 YSCKECGTNLNLNTSHLYPATV---YFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETL 61
             YSC  CG  LNL++++   +T+   Y  +   G +SF  ID  +F    E +  P F   
Sbjct:    38 YSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEGRFSQVDEFQCMPHFSRY 97

Query:    62 DYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR 121
               WG+ R RTK+ C  C   +G    +  P      Q     S  I    +Y ++ ++L+
Sbjct:    98 S-WGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSDPTSPRIGSVTKYDIRIRSLQ 156

Query:   122 IST 124
              S+
Sbjct:   157 PSS 159

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|E1C1X3 MSRB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 84 (34.6 bits), Expect = 0.00066, Sum P(2) = 0.00066
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query:    52 DKIRPFFETL-DYWGIQRKRTKIKCNNCGALLGYIYDDGP 90
             D I P   TL D +     R +I C+ CGA LG+I+DDGP
Sbjct:   104 DVISPDTITLTDDFSYGMHRIEISCSQCGAHLGHIFDDGP 143

GO:0005739 "mitochondrion" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030091 "protein repair" evidence=IEA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
COG0229	140	COG0229, COG0229, Conserved domain frequently asso	4e-04
PRK00222	142	PRK00222, PRK00222, methionine sulfoxide reductase	0.002
TIGR00357	134	TIGR00357, TIGR00357, methionine-R-sulfoxide reduc	0.004

>gnl|CDD|223307 COG0229, COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 70  RTKIKCNNCGALLGYIYDDGPPAVDTPG 97
           RT+++C NC + LG+++ DGPP   T G
Sbjct: 89  RTEVRCANCDSHLGHVFPDGPP--PTGG 114

Length = 140

>gnl|CDD|234692 PRK00222, PRK00222, methionine sulfoxide reductase B; Provisional

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 70  RTKIKCNNCGALLGYIYDDGPP 91
           RT+++C NC + LG+++ DGP 
Sbjct: 90  RTEVRCANCDSHLGHVFPDGPK 111

Length = 142

>gnl|CDD|129454 TIGR00357, TIGR00357, methionine-R-sulfoxide reductase

 Score = 34.4 bits (79), Expect = 0.004
 Identities = 12/23 (52%), Positives = 18/23 (78%)

Query: 68  RKRTKIKCNNCGALLGYIYDDGP 90
             RT+++C NC A LG+++DDGP
Sbjct: 85  MIRTEVRCRNCDAHLGHVFDDGP 107

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested [Protein fate, Protein modification and repair, Cellular processes, Adaptations to atypical conditions]. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
COG0229	140	Conserved domain frequently associated with peptid	100.0
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	100.0
PRK00222	142	methionine sulfoxide reductase B; Provisional	100.0
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	100.0
PRK05508	119	methionine sulfoxide reductase B; Provisional	100.0
KOG0856	146	consensus Predicted pilin-like transcription facto	100.0
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	100.0
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	95.79
TIGR01384	104	TFS_arch transcription factor S, archaeal. There h	82.96
PF04828	92	GFA: Glutathione-dependent formaldehyde-activating	81.08

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-42  Score=260.11  Aligned_cols=87  Identities=31%  Similarity=0.644  Sum_probs=83.0

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||.||       |+|++||+||| |||||+ ||++++|+..+|.++            +|.||||+|++|+
T Consensus        39 ~~GiY~c~~cg~pL-------F~S~~KfdSgc-GWPSF~~pi~~~~I~~~~D~S~------------gM~RtEVrc~~c~   98 (140)
T COG0229          39 EKGIYVCIVCGEPL-------FSSEDKFDSGC-GWPSFTKPISPDAITYKEDRSH------------GMVRTEVRCANCD   98 (140)
T ss_pred             CCceEEeecCCCcc-------ccccccccCCC-CCccccccCCcccceEeeccCC------------CcEEEEEEecCCC
Confidence            37999999999999       99999999999 999999 999999999999998            8899999999999


Q ss_pred             CccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124           80 ALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI  122 (126)
Q Consensus        80 ~HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p  122 (126)
                      +||||||+|||+|+|+               +|||||++||+=
T Consensus        99 sHLGHVF~DGP~~tgg---------------lRYCINSasL~F  126 (140)
T COG0229          99 SHLGHVFPDGPPPTGG---------------LRYCINSASLRF  126 (140)
T ss_pred             CccccccCCCCCCCCC---------------eeEeecchheee
Confidence            9999999999999984               899999999984

>TIGR00357 methionine-R-sulfoxide reductase

Probab=100.00  E-value=2.8e-41  Score=253.71  Aligned_cols=86  Identities=33%  Similarity=0.605  Sum_probs=81.3

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||+||       |+|++||+||| |||||+ +|++++|++++|.++            +|+||||+|++||
T Consensus        37 ~~G~Y~C~~Cg~pL-------F~S~~KfdSg~-GWPSF~~~i~~~~V~~~~D~s~------------gm~RtEv~C~~Cg   96 (134)
T TIGR00357        37 EEGIYVDITCGEPL-------FSSEDKFDSGC-GWPSFYKPISEEVVAYERDESH------------GMIRTEVRCRNCD   96 (134)
T ss_pred             CCeEEEccCCCCcc-------ccccchhcCCC-CCcCcCcccCCCceEEeecCCC------------CcEEEEEEecCCC
Confidence            37999999999999       99999999999 999999 998999999999887            7899999999999


Q ss_pred             CccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124           80 ALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI  122 (126)
Q Consensus        80 ~HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p  122 (126)
                      +||||||+|||+||+                +|||||++||+=
T Consensus        97 ~HLGHVF~DGP~ptg----------------~RyCINs~sL~F  123 (134)
T TIGR00357        97 AHLGHVFDDGPEPTG----------------LRYCINSAALKF  123 (134)
T ss_pred             CccCcccCCCCCCCC----------------ceEeecceeEec
Confidence            999999999998876                799999999973

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=1.7e-40  Score=251.43  Aligned_cols=86  Identities=31%  Similarity=0.643  Sum_probs=81.3

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||+||       |+|++||+||| |||||+ +|++++|++++|.++            +|.||||+|++||
T Consensus        40 ~~G~Y~C~~Cg~pL-------F~S~~Kf~Sg~-GWPSF~~~i~~~~V~~~~D~s~------------gm~RtEv~C~~Cg   99 (142)
T PRK00222         40 EKGIYVCIVCGEPL-------FSSDTKFDSGC-GWPSFTKPIDEEAIRELRDTSH------------GMVRTEVRCANCD   99 (142)
T ss_pred             CCeEEEecCCCchh-------cCCcccccCCC-CCcCcCcccCCCceEEeeccCC------------CceEEEEEeCCCC
Confidence            37999999999999       99999999999 999999 998899999999887            7899999999999


Q ss_pred             CccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124           80 ALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI  122 (126)
Q Consensus        80 ~HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p  122 (126)
                      +||||||+|||+|++                +|||||++||+=
T Consensus       100 ~HLGHVF~DGP~ptg----------------~RyCINs~sL~F  126 (142)
T PRK00222        100 SHLGHVFPDGPKPTG----------------LRYCINSASLKF  126 (142)
T ss_pred             CccCcccCCCCCCCC----------------CEeeeceeeEEe
Confidence            999999999998876                799999999974

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=100.00  E-value=1e-39  Score=242.44  Aligned_cols=86  Identities=33%  Similarity=0.641  Sum_probs=78.1

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||+||       |+|++||+||| |||||+ +|++++|+.+.|.++            +|+||||+|++||
T Consensus        34 ~~G~Y~C~~Cg~pL-------F~S~~Kf~Sg~-GWPSF~~~i~~~~v~~~~D~s~------------g~~R~Ev~C~~Cg   93 (124)
T PF01641_consen   34 EEGIYVCAVCGTPL-------FSSDTKFDSGC-GWPSFWQPIPGDAVKEREDFSH------------GMVRTEVRCARCG   93 (124)
T ss_dssp             SSEEEEETTTS-EE-------EEGGGEETSSS-SSSEESSCSSTTSEEEEEEECT------------SSEEEEEEETTTC
T ss_pred             CCEEEEcCCCCCcc-------ccCcccccCCc-CCccccCcCChHHEEEeccccC------------CceEEEEEecCCC
Confidence            37999999999999       99999999999 999999 998889999999886            7899999999999


Q ss_pred             CccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeecccee
Q 033124           80 ALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR  121 (126)
Q Consensus        80 ~HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~  121 (126)
                      +||||||+|||+|+.               ++|||||++||+
T Consensus        94 ~HLGHVF~DGp~~~t---------------g~RyCINS~sL~  120 (124)
T PF01641_consen   94 SHLGHVFDDGPPPPT---------------GLRYCINSASLK  120 (124)
T ss_dssp             CEEEEEESTSSTTCT---------------SCEEEE-GGGEE
T ss_pred             CccccEeCCCCCCCC---------------CcEEEeeeeeEE
Confidence            999999999998742               389999999996

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=2.1e-38  Score=234.23  Aligned_cols=83  Identities=30%  Similarity=0.590  Sum_probs=74.0

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||+||       |+|++||+||| |||||+ +|+ ++|+.++|.+             + +||||+|++||
T Consensus        30 ~~G~Y~C~~Cg~pL-------F~S~~KfdSg~-GWPSF~~~i~-~~v~~~~D~~-------------~-~RtEv~C~~C~   86 (119)
T PRK05508         30 EKGTYVCKQCGAPL-------YRSEDKFKSGC-GWPSFDDEIK-GAVKRIPDAD-------------G-RRTEIVCANCG   86 (119)
T ss_pred             CCeEEEecCCCCcc-------ccccccccCCC-CCcccCcccc-cceEEEecCC-------------C-cEEEEEeCCCC
Confidence            37999999999999       99999999999 999999 885 7899888865             2 69999999999


Q ss_pred             CccccccCC-CCCCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124           80 ALLGYIYDD-GPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI  122 (126)
Q Consensus        80 ~HLGhvF~D-gp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p  122 (126)
                      +||||||+| ||+||+                +|||||++||+=
T Consensus        87 ~HLGHVF~d~gp~ptg----------------~RyCINS~sL~F  114 (119)
T PRK05508         87 GHLGHVFEGEGFTPKN----------------TRHCVNSISLKF  114 (119)
T ss_pred             CccCcccCCCCCCCCC----------------CEEeecceeEEe
Confidence            999999985 566665                899999999983

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-35  Score=224.78  Aligned_cols=86  Identities=29%  Similarity=0.635  Sum_probs=80.1

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++|++||       |+|.+||+||| |||+|+ +|.+++|++.+|.+.            +++|+||.|++||
T Consensus        51 e~GvY~C~~C~~pL-------ykS~tKfdsgc-GWPAF~e~i~~gaI~r~~d~s~------------~~~R~Ev~Ca~C~  110 (146)
T KOG0856|consen   51 EEGVYVCAGCGTPL-------YKSTTKFDSGC-GWPAFFEAIGPGAITRTPDNSR------------GGRRTEVSCATCG  110 (146)
T ss_pred             CCceEEEeecCCcc-------ccccccccCCC-CCchhhhccCCCceeeccccCC------------CCcceEEEEeecC
Confidence            47999999999999       99999999999 999998 888999999999887            6689999999999


Q ss_pred             CccccccC-CCCC-CCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124           80 ALLGYIYD-DGPP-AVDTPGQFHFGPSQVIPRYPRYRLKTKALRI  122 (126)
Q Consensus        80 ~HLGhvF~-Dgp~-pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p  122 (126)
                      +||||||. |||. ||+                .|||||++||.=
T Consensus       111 ~HLGHVF~~eG~~~Pt~----------------~R~CiNS~sL~F  139 (146)
T KOG0856|consen  111 GHLGHVFKGEGPKTPTD----------------ERHCINSVSLKF  139 (146)
T ss_pred             CceeeeecCCCCCCCCC----------------ceeEeeeeeeee
Confidence            99999997 9987 776                699999999963

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=100.00  E-value=2.8e-34  Score=252.16  Aligned_cols=86  Identities=23%  Similarity=0.399  Sum_probs=80.3

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||+||       |+|.+||+||| |||||+ +|++++|++.+|.++            +|.||||+|++||
T Consensus       415 ~~G~y~c~~c~~pL-------f~s~~Kf~sg~-GWPsF~~~i~~~~v~~~~d~s~------------g~~R~Ev~c~~c~  474 (521)
T PRK14018        415 KPGIYVDVVSGEPL-------FSSADKYDSGC-GWPSFTRPIDAKVVTEHDDFSY------------NMRRTEVRSRAAD  474 (521)
T ss_pred             CCEEEEecCCCCcc-------ccCcccccCCC-CCcccCcccCcCceEEeeccCC------------CceEEEEEECCCC
Confidence            37999999999999       99999999999 999999 999999999999987            7899999999999


Q ss_pred             CccccccCCCCCC-CCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124           80 ALLGYIYDDGPPA-VDTPGQFHFGPSQVIPRYPRYRLKTKALRI  122 (126)
Q Consensus        80 ~HLGhvF~Dgp~p-t~~~~~~~~~~~~~~~~~~rY~i~~~AL~p  122 (126)
                      +||||||+|||+| +|                +|||||++||+=
T Consensus       475 ~HLGHvf~dgp~~~~g----------------~RyCiNs~~l~f  502 (521)
T PRK14018        475 SHLGHVFPDGPRDKGG----------------LRYCINGASLKF  502 (521)
T ss_pred             CcCCcccCCCCCCCCC----------------CEeeeceeEEEe
Confidence            9999999999964 54                899999999973

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=233.30  Aligned_cols=82  Identities=30%  Similarity=0.607  Sum_probs=72.7

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||+||       |+|++||+||| |||||+ +|+ +++....|.+             +| ||||+|++||
T Consensus        33 ~~G~y~c~~c~~~L-------F~s~~Kf~sg~-GWPsF~~~~~-~~~~~~~d~~-------------~~-R~Ev~c~~c~   89 (283)
T PRK05550         33 EKGVYLCRRCGAPL-------FRSEDKFNSGC-GWPSFDDEIP-GAVKRLPDAD-------------GR-RTEIVCANCG   89 (283)
T ss_pred             CCcEEEcCCCCchh-------cCChhhccCCC-CCcCcCcccC-CccEEEEcCC-------------Cc-eEEEEecCCC
Confidence            37999999999999       99999999999 999999 885 5677777654             33 9999999999


Q ss_pred             CccccccC-CCCCCCCCCCCcCCCCCCCCCCCceeEeecccee
Q 033124           80 ALLGYIYD-DGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR  121 (126)
Q Consensus        80 ~HLGhvF~-Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~  121 (126)
                      +||||||+ |||+||+                +|||||++||+
T Consensus        90 ~HLGHvF~ddgp~ptg----------------~RyCiNs~sL~  116 (283)
T PRK05550         90 AHLGHVFEGEGLTPKN----------------TRHCVNSASLD  116 (283)
T ss_pred             CccCcccCCCCCCCCC----------------ccccccccccc
Confidence            99999998 7777775                89999999997

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=95.79  E-value=0.0095  Score=41.25  Aligned_cols=39  Identities=18%  Similarity=0.578  Sum_probs=28.5

Q ss_pred             EEEEecCccCCccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeecccee
Q 033124           70 RTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR  121 (126)
Q Consensus        70 Rtev~C~~Cg~HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~  121 (126)
                      -..|.|++|+.+||-.|..-+..-.            -.. -+|.+..++|.
T Consensus        55 ~~~l~C~~C~~~lGwkY~~a~~~~~------------~k~-g~file~~~i~   93 (96)
T PF03226_consen   55 VRDLFCSGCNTILGWKYESAPEEQK------------YKE-GKFILEKASIS   93 (96)
T ss_pred             EEEeEcccCChhHCcEEEEcCHhHh------------hhC-CEEEEEhhHEE
Confidence            4689999999999999876654311            111 38999988875

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>TIGR01384 TFS_arch transcription factor S, archaeal

Probab=82.96  E-value=1.2  Score=31.05  Aligned_cols=20  Identities=25%  Similarity=0.634  Sum_probs=14.6

Q ss_pred             ceEEEEecCccCCccccccC
Q 033124           68 RKRTKIKCNNCGALLGYIYD   87 (126)
Q Consensus        68 ~~Rtev~C~~Cg~HLGhvF~   87 (126)
                      ..++++.|.+||.+-...|.
T Consensus        58 ~~~~~~~Cp~Cg~~~a~f~~   77 (104)
T TIGR01384        58 LPTTRVECPKCGHKEAYYWL   77 (104)
T ss_pred             CCcccCCCCCCCCCeeEEEE
Confidence            35789999999866555543

There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.

>PF04828 GFA: Glutathione-dependent formaldehyde-activating enzyme; InterPro: IPR006913 The GFA family consists mainly of glutathione-dependent formaldehyde-activating enzymes, but also includes centromere protein V and a fission yeast protein described as uncharacterised lyase

Probab=81.08  E-value=2.3  Score=27.68  Aligned_cols=23  Identities=17%  Similarity=0.278  Sum_probs=15.3

Q ss_pred             CceEEEEecCccCCccccccCCC
Q 033124           67 QRKRTKIKCNNCGALLGYIYDDG   89 (126)
Q Consensus        67 ~~~Rtev~C~~Cg~HLGhvF~Dg   89 (126)
                      ........|++||.+|.......
T Consensus        43 ~~~~~r~FC~~CGs~l~~~~~~~   65 (92)
T PF04828_consen   43 GKGVERYFCPTCGSPLFSEDERD   65 (92)
T ss_dssp             TSSCEEEEETTT--EEEEEESST
T ss_pred             CCcCcCcccCCCCCeeecccCCC
Confidence            44567899999999999763333

Glutathione-dependent formaldehyde-activating enzyme catalyse the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione. All known members of this family contain 5 strongly conserved cysteine residues.; GO: 0016846 carbon-sulfur lyase activity, 0008152 metabolic process; PDB: 3FAC_B 1XA8_A 1X6M_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	2e-04
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	7e-04
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	8e-04

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus} Length = 143

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 24/94 (25%)

Query: 4   IYSCKECGTNLNLNTSHLYPATVYFPAGNK---GT--LSFAMIDSTKFRLEKEDKIRPFF 58
           +Y C  C + L             F +  K   GT   SF+    +K   E    I    
Sbjct: 37  MYHCVCCDSPL-------------FSSEKKYCSGTGWPSFSEAYGSKGSDESHTGIL--- 80

Query: 59  ETLDY-WGIQRKRTKIKCNNCGALLGYIYDDGPP 91
             LD   G    R ++ C  C A LG+++ DGP 
Sbjct: 81  RRLDTSLGC--PRMEVVCKQCEAHLGHVFPDGPK 112

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A* Length = 154

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 8/43 (18%)

Query: 57  FFETLDYWGIQRK--------RTKIKCNNCGALLGYIYDDGPP 91
           FF   D   ++          RT+I C  C + LG+++ DGPP
Sbjct: 76  FFAPYDPAHVREIRDTSYGMIRTEIVCARCDSHLGHVFPDGPP 118

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} Length = 151

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 31/94 (32%)

Query: 4   IYSCKECGTNLNLNTSHLYPATVYFPAGNK---GT--LSFAMIDSTKFRLEKEDKIRPFF 58
           IY C  CGT+L             F +  K   GT   SF       + +  E  I+   
Sbjct: 61  IYRCICCGTDL-------------FDSETKFDSGTGWPSF-------YDVVSEHNIK--- 97

Query: 59  ETLDY-WGIQRKRTKIKCNNCGALLGYIYDDGPP 91
              D   G+   R ++ C  C A LG+++DDGP 
Sbjct: 98  LREDRSLGM--VRCEVLCARCDAHLGHVFDDGPR 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	100.0
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	100.0
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	100.0
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	100.0
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	100.0
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	100.0
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	100.0
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	100.0
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	100.0
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	100.0

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=100.00  E-value=8.7e-41  Score=252.49  Aligned_cols=84  Identities=24%  Similarity=0.392  Sum_probs=79.1

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||+||       |+|++||+||| |||||+ +|++ +|+.+.|.++            +|.||||+|++||
T Consensus        39 ~~G~Y~C~~Cg~pL-------F~S~~KfdSg~-GWPSF~~pi~~-~v~~~~D~s~------------gm~RtEV~C~~Cg   97 (144)
T 3e0o_A           39 EEGLYVDIVSGKPL-------FTSKDKFDSQC-GWPSFTKPIEE-EVEEKLDTSH------------GMIRTEVRSRTAD   97 (144)
T ss_dssp             CSEEEEETTTCCEE-------EETTTBCCCTT-SSCEESCCSTT-TEEEEEECCT------------TSCEEEEEETTTC
T ss_pred             CCEEEEeCCCCccc-------ccCcccccCCC-CCcccCchhcc-ceEEeecCCC------------CceEEEEEcCCCC
Confidence            37999999999999       99999999999 999999 8977 9999999887            7799999999999


Q ss_pred             CccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeecccee
Q 033124           80 ALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR  121 (126)
Q Consensus        80 ~HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~  121 (126)
                      +||||||+|||+|||                +|||||++||+
T Consensus        98 ~HLGHVF~DGP~ptg----------------~RyCiNS~sL~  123 (144)
T 3e0o_A           98 SHLGHVFNDGPGPNG----------------LRYCINSAALR  123 (144)
T ss_dssp             CEEEEEESCCSSTTC----------------CEEEECGGGEE
T ss_pred             CccCCccCCCCCCCC----------------CEeeeceeeEe
Confidence            999999999998876                79999999997

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=100.00  E-value=8.9e-41  Score=241.33  Aligned_cols=84  Identities=23%  Similarity=0.559  Sum_probs=77.3

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||+||       |+|++||+||| |||||+ +|++++|+..+|.+             .|.||||+|++||
T Consensus        10 ~~G~Y~C~~Cg~pL-------F~S~~KFdSg~-GWPSF~~pi~~~~v~~~~D~~-------------~~~RtEV~C~~C~   68 (105)
T 3mao_A           10 EPGVYVCAKCGYEL-------FSSRSKYAHSS-PWPAFTETIHADSVAKRPEHN-------------RSEALKVSCGKCG   68 (105)
T ss_dssp             CSEEEEETTTCCEE-------EEGGGEECCSS-SSCEESCCSSTTSEEEEECTT-------------STTEEEEEETTTC
T ss_pred             CCEEEEcCCCCCcc-------ccCCcccCCCC-CChhhccccCCCceEEEecCC-------------CCCEEEEEeCCCC
Confidence            37999999999999       99999999999 999999 89889999888754             3479999999999


Q ss_pred             Ccccccc-CCCCCCCCCCCCcCCCCCCCCCCCceeEeecccee
Q 033124           80 ALLGYIY-DDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR  121 (126)
Q Consensus        80 ~HLGhvF-~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~  121 (126)
                      +|||||| +|||+|||                +|||||++||+
T Consensus        69 ~HLGHVF~~DGP~ptg----------------~RyCiNS~sL~   95 (105)
T 3mao_A           69 NGLGHEFLNDGPKPGQ----------------SRFSIFSSSLK   95 (105)
T ss_dssp             CEEEEEETTCSSSTTC----------------CEEEECGGGEE
T ss_pred             CccCcccCCCCcCCCC----------------CEEeeCeeeEE
Confidence            9999999 79998876                79999999997

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=100.00  E-value=7e-41  Score=255.27  Aligned_cols=86  Identities=30%  Similarity=0.624  Sum_probs=80.9

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||+||       |+|++||+||| |||||+ +|++++|+.+.|.++            +|.||||+|++||
T Consensus        47 ~~G~Y~C~~Cg~pL-------F~S~~KFdSg~-GWPSF~~pi~~~~v~~~~D~s~------------gm~RtEV~C~~Cg  106 (154)
T 3hcj_A           47 LDGVYTCRLCGLPL-------FRSNAKFDSGT-GWPSFFAPYDPAHVREIRDTSY------------GMIRTEIVCARCD  106 (154)
T ss_dssp             SSEEEEETTTCCEE-------EEECTTCCCCT-TSSTTEEESCGGGEEEECCTTT------------TTSCEEEEETTTC
T ss_pred             CCEEEEccCCCCcc-------ccCcccccCCC-CCcccccccCccceEEeecCCC------------CceEEEEEeCCCC
Confidence            36999999999999       99999999999 999999 998889999999887            7799999999999


Q ss_pred             CccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124           80 ALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI  122 (126)
Q Consensus        80 ~HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p  122 (126)
                      +||||||+|||+|||                +|||||++||+=
T Consensus       107 ~HLGHVF~DGP~ptg----------------~RyCiNS~sL~F  133 (154)
T 3hcj_A          107 SHLGHVFPDGPPPTG----------------ERHCLNSVSLAF  133 (154)
T ss_dssp             CEEEEEESCSCTTTT----------------CEEEECGGGEEE
T ss_pred             CccCCccCCCCCCCC----------------CEeeeceeeEEe
Confidence            999999999998886                799999999973

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=7.3e-41  Score=254.54  Aligned_cols=86  Identities=31%  Similarity=0.689  Sum_probs=80.9

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||+||       |+|++||+||| |||||+ +|++++|+.+.|.++            +|.||||+|++||
T Consensus        58 ~~G~Y~C~~Cg~pL-------F~S~~KFdSg~-GWPSF~~pi~~~~V~~~~D~s~------------gm~RtEV~C~~Cg  117 (151)
T 2k8d_A           58 DDGIYRCICCGTDL-------FDSETKFDSGT-GWPSFYDVVSEHNIKLREDRSL------------GMVRCEVLCARCD  117 (151)
T ss_dssp             SCSEEEETTTTEEE-------EEGGGSCCSTT-CCSEESCCSCTTSEECCCCBTT------------SSCEEEEEETTEE
T ss_pred             CCEEEEecCCCCcc-------cCCcccccCCC-CCcccCcccCCCceEEeeCCCC------------CceEEEEEeCCCC
Confidence            36999999999999       99999999999 999999 998889999999887            7899999999999


Q ss_pred             CccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124           80 ALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI  122 (126)
Q Consensus        80 ~HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p  122 (126)
                      +||||||+|||+|||                +|||||++||+=
T Consensus       118 ~HLGHVF~DGP~ptg----------------~RyCINS~sL~F  144 (151)
T 2k8d_A          118 AHLGHVFDDGPRPTG----------------KRYCMNSAALKF  144 (151)
T ss_dssp             EEEEEEEECSSSSSC----------------EEEEECSTTEEE
T ss_pred             CcCCcccCCCCCCCC----------------CEEeeceeeecc
Confidence            999999999998876                899999999973

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=100.00  E-value=2.4e-40  Score=249.84  Aligned_cols=86  Identities=24%  Similarity=0.540  Sum_probs=80.1

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccC-------CCCeEEeecCCcccccccccccCCCceEEE
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MID-------STKFRLEKEDKIRPFFETLDYWGIQRKRTK   72 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~-------~~~v~~~~d~~~~p~f~~~~s~g~~~~Rte   72 (126)
                      .+|+|+|++||.||       |+|++||+||| |||||+ +|+       +++|+...|.++            +|.|||
T Consensus        34 ~~G~Y~C~~Cg~pL-------F~S~~KFdSg~-GWPSF~~pi~~~~~~~~~~~V~~~~D~s~------------gm~RtE   93 (143)
T 2l1u_A           34 ETGMYHCVCCDSPL-------FSSEKKYCSGT-GWPSFSEAYGSKGSDESHTGILRRLDTSL------------GCPRME   93 (143)
T ss_dssp             CCEEEEESSSSCEE-------EEGGGBCTTTT-CCSBBSSCCSCCTTHHHHTCEEEEEECTT------------SSCEEE
T ss_pred             CCeEEEeCCCCCee-------ecCcccccCCC-CChhhchhhccccccCCCCceEEeecccC------------CceEEE
Confidence            37999999999999       99999999999 999999 886       779999999886            779999


Q ss_pred             EecCccCCccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124           73 IKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI  122 (126)
Q Consensus        73 v~C~~Cg~HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p  122 (126)
                      |+|++||+||||||+|||+|||                +|||||++||+=
T Consensus        94 V~C~~Cg~HLGHVF~DGP~ptg----------------~RyCINS~sL~F  127 (143)
T 2l1u_A           94 VVCKQCEAHLGHVFPDGPKPTG----------------QRFCINSVALKF  127 (143)
T ss_dssp             EEESSSCCCCEEEECCSSCGGG----------------CEEEECCTTEEE
T ss_pred             EEECCCCCcCCcccCCCCCCCC----------------CEEEeeeeEEec
Confidence            9999999999999999998876                799999999973

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=100.00  E-value=7.8e-40  Score=242.19  Aligned_cols=84  Identities=21%  Similarity=0.506  Sum_probs=77.9

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||+||       |+|++||+||| |||||+ +|++++|+.++|.+             +|+||||+|++||
T Consensus        17 e~G~Y~C~~Cg~pL-------F~S~~KfdSg~-GWPSF~~~i~~~~v~~~~d~~-------------~~~r~Ev~C~~Cg   75 (124)
T 2kv1_A           17 EPGVYVCAKCSYEL-------FSSHSKYAHSS-PWPAFTETIHPDSVTKCPEKN-------------RPEALKVSCGKCG   75 (124)
T ss_dssp             CCEEEEETTTCCBC-------CCTTSCCCCCS-SSCCBSCCCCCSSCEEEECSS-------------STTCEEEECTTTT
T ss_pred             CCEEEEecCCCCcc-------cccCCcccCCC-CCceeecccccceEEEEeccC-------------CceEEEEEEecCC
Confidence            36999999999999       99999999999 999999 99999999888865             4579999999999


Q ss_pred             Ccccccc-CCCCCCCCCCCCcCCCCCCCCCCCceeEeecccee
Q 033124           80 ALLGYIY-DDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR  121 (126)
Q Consensus        80 ~HLGhvF-~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~  121 (126)
                      +|||||| +|||+||+                +|||||++||+
T Consensus        76 ~HLGHVF~~DGP~ptg----------------~RyCINS~sL~  102 (124)
T 2kv1_A           76 NGLGHEFLNDGPKRGQ----------------SRFCIFSSSLK  102 (124)
T ss_dssp             CCCEEECTTSCTTTTC----------------SCEECCTTTEE
T ss_pred             CccCCccCCCCCCCCC----------------CEEeecceeeE
Confidence            9999999 89999886                79999999997

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=100.00  E-value=1.6e-40  Score=251.44  Aligned_cols=85  Identities=24%  Similarity=0.410  Sum_probs=79.6

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||+||       |+|++||+||| |||||+ +|++++|+.+.|.++            +|.||||+|++||
T Consensus        40 ~~G~Y~C~~Cg~pL-------F~S~~KFdSg~-GWPSF~~pi~~~~v~~~~D~s~------------gm~RtEV~C~~Cg   99 (146)
T 3hcg_A           40 KPGIYVDVVSGEPL-------FSSADKYDSGC-GWPSFTRPIDAKSVTEHDDFSY------------NMRRTEVRSHAAD   99 (146)
T ss_dssp             CSEEEEETTTCCEE-------EEGGGEECCSS-SSCEESSCSSGGGEEEEEEEET------------TEEEEEEEETTTC
T ss_pred             CCEEEEecCCCccc-------ccCcccccCCC-CChhhccccCCCceEEeecCCC------------CcEEEEEEeCCCC
Confidence            37999999999999       99999999999 999999 998899999999887            7899999999999


Q ss_pred             CccccccCCCCCC-CCCCCCcCCCCCCCCCCCceeEeecccee
Q 033124           80 ALLGYIYDDGPPA-VDTPGQFHFGPSQVIPRYPRYRLKTKALR  121 (126)
Q Consensus        80 ~HLGhvF~Dgp~p-t~~~~~~~~~~~~~~~~~~rY~i~~~AL~  121 (126)
                      +||||||+|||+| ||                +|||||++||+
T Consensus       100 ~HLGHVF~DGP~~~tg----------------~RyCiNS~sL~  126 (146)
T 3hcg_A          100 SHLGHVFPDGPRDKGG----------------LRYCINGASLK  126 (146)
T ss_dssp             CEEEEEESCSCGGGTS----------------CEEEECGGGEE
T ss_pred             CccCceeCCCCCCCCC----------------CEEeeeeEEEE
Confidence            9999999999974 55                89999999997

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=100.00  E-value=7.9e-40  Score=251.58  Aligned_cols=86  Identities=33%  Similarity=0.634  Sum_probs=80.4

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||.||       |+|++||+||| |||||+ +|++++|+..+|.++            +|.||||+|++||
T Consensus        70 ~~GiY~C~~Cg~pL-------F~S~~KFdSGc-GWPSF~~pi~~~~V~~~~D~s~------------gm~RtEV~C~~Cg  129 (164)
T 3cxk_A           70 DAGIYHCVVCGTAL-------FESGAKYHSGC-GWPSYFKPIDGEVIDEKMDYTH------------GMTRVEVRCNQCG  129 (164)
T ss_dssp             CSEEEEETTTCCEE-------EEGGGBCCCCS-SSCEESSCSSTTSEEEEEECGG------------GCCEEEEEETTTC
T ss_pred             CCeEEEccCCCccc-------cCCchhccCCC-CCcccCcccCCCceEEeECCCC------------CcEEEEEEeCCCC
Confidence            36999999999999       99999999999 999999 998889999999886            7799999999999


Q ss_pred             CccccccCCCC-CCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124           80 ALLGYIYDDGP-PAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI  122 (126)
Q Consensus        80 ~HLGhvF~Dgp-~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p  122 (126)
                      +||||||+||| +|+|                +|||||++||+=
T Consensus       130 ~HLGHVF~DGP~~ptg----------------~RyCINS~sL~F  157 (164)
T 3cxk_A          130 AHLGHVFEDGPRDKTG----------------LRYCINSAALNF  157 (164)
T ss_dssp             CEEEEEESCSCTTTTS----------------CEEEECGGGEEE
T ss_pred             CccCcccCCCCCCCCC----------------CEEeeceeeEee
Confidence            99999999999 7776                799999999974

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=100.00  E-value=5.9e-37  Score=254.61  Aligned_cols=86  Identities=26%  Similarity=0.379  Sum_probs=80.2

Q ss_pred             CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124            1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG   79 (126)
Q Consensus         1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg   79 (126)
                      .+|+|+|++||.||       |+|++||+||| |||||+ +|++++|+.+.|.++            +|.||||+|++||
T Consensus       206 ~~G~Y~c~~cg~pL-------F~S~~KfdSg~-GWPSF~~~i~~~~v~~~~D~s~------------gm~RtEv~c~~c~  265 (313)
T 3e0m_A          206 EEGIYVDITTGEPL-------FFAKDKFASGC-GWPSFSRPLSKELIHYYKDLSH------------GMERIEVRSRSGS  265 (313)
T ss_dssp             CSEEEEETTTCCEE-------EEGGGBCCCCS-SSCEESSCSSGGGEEEEEECCT------------TCCEEEEEESSSC
T ss_pred             CCeEEEecCCCccc-------cCCCccccCCC-CCcccCcccCCCceEEeecCCC------------CcEEEEEECCCCC
Confidence            37999999999999       99999999999 999999 998899999999887            7799999999999


Q ss_pred             CccccccCCCC-CCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124           80 ALLGYIYDDGP-PAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI  122 (126)
Q Consensus        80 ~HLGhvF~Dgp-~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p  122 (126)
                      +||||||+||| +|||                +|||||++||+=
T Consensus       266 ~HLGHVF~DGp~~ptg----------------~RyCiNs~sL~F  293 (313)
T 3e0m_A          266 AHLGHVFTDGPRELGG----------------LRYCINSASLRF  293 (313)
T ss_dssp             CEEEEEESCSCTTTTS----------------CEEEECGGGEEE
T ss_pred             CccCcccCCCCCCCCC----------------CEEeeceeeEee
Confidence            99999999999 5665                899999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d1l1da_	144	b.88.1.3 (A:) C-terminal MsrB domain of peptide me	9e-04
d1xm0a1	143	b.88.1.3 (A:1-143) Peptide methionine sulfoxide re	0.002

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]} Length = 144

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

 Score = 34.6 bits (79), Expect = 9e-04
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 57  FFETLDYWGIQRKRTKIKCNNCGALLGYIYDDGP 90
                D +    +RT+++     + LG+++ DGP
Sbjct: 76  SVTEHDDFSFNMRRTEVRSRAADSHLGHVFPDGP 109

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]} Length = 143

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

 Score = 33.7 bits (77), Expect = 0.002
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 59  ETLDYWGIQRKRTKIKCNNCGALLGYIYDDGPP 91
           E LD       RT+++     + LG++++DGP 
Sbjct: 77  EKLDTSHGMI-RTEVRSRTADSHLGHVFNDGPG 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	100.0
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	100.0

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=100.00  E-value=1.8e-39  Score=243.30  Aligned_cols=85  Identities=24%  Similarity=0.409  Sum_probs=80.1

Q ss_pred             CcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccCC
Q 033124            2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCGA   80 (126)
Q Consensus         2 ~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg~   80 (126)
                      +|+|.|++||+||       |+|++||+|+| |||||+ +|++++|+..+|.++            +|.||||+|++||+
T Consensus        40 ~G~Y~C~~Cg~pL-------F~S~~KfdSg~-GWPSF~~~i~~~~v~~~~d~s~------------gm~R~Ev~C~~Cg~   99 (144)
T d1l1da_          40 PGIYVDVVSGEPL-------FSSADKYDSGC-GWPSFTRPIDAKSVTEHDDFSF------------NMRRTEVRSRAADS   99 (144)
T ss_dssp             SEEEEETTTCCEE-------EEGGGEECCSS-SSCEESSCSSTTSEEEEEECCT------------TSCEEEEEETTTCC
T ss_pred             cCceEecccccee-------eehhhcccCCc-cceeeccccccccccceecccc------------cccceeeEecCCCC
Confidence            7999999999999       99999999999 999999 999999999999997            78999999999999


Q ss_pred             ccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeecccee
Q 033124           81 LLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR  121 (126)
Q Consensus        81 HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~  121 (126)
                      ||||||+|||.|++               ++|||||++||+
T Consensus       100 HLGHVF~DGp~~~~---------------~~RyCiNs~sL~  125 (144)
T d1l1da_         100 HLGHVFPDGPRDKG---------------GLRYCINGASLK  125 (144)
T ss_dssp             EEEEEESCSCGGGT---------------SCEEEECGGGEE
T ss_pred             ccCcccCCCCCCCC---------------CCEeccceeeEE
Confidence            99999999997754               379999999997

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=8e-39  Score=239.63  Aligned_cols=83  Identities=24%  Similarity=0.405  Sum_probs=76.4

Q ss_pred             CcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccCC
Q 033124            2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCGA   80 (126)
Q Consensus         2 ~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg~   80 (126)
                      +|+|+|++|++||       |+|++||+|+| |||||+ +|++ .+....|.+.            +|.||||+|++||+
T Consensus        39 ~G~Y~C~~C~~pL-------F~S~~KfdSg~-GWPSF~~~i~~-~v~~~~D~s~------------gm~R~Ev~C~~Cg~   97 (143)
T d1xm0a1          39 EGLYVDIVSGKPL-------FTSKDKFDSQC-GWPSFTKPIEE-EVEEKLDTSH------------GMIRTEVRSRTADS   97 (143)
T ss_dssp             SEEEEESSTTCEE-------EETTTCCCCCS-SSCCEEESCCC-SEEEECCCCT------------TCCCCEEEESSCTT
T ss_pred             CceEEeccccchh-------hhhhhhhccCC-ccceeeccccc-ceEEEecCCC------------CccccceEecCCCC
Confidence            7999999999999       99999999999 999999 8865 4556778886            77999999999999


Q ss_pred             ccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeecccee
Q 033124           81 LLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR  121 (126)
Q Consensus        81 HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~  121 (126)
                      ||||||+|||+||+                +|||||++||+
T Consensus        98 HLGHVF~DGp~ptg----------------~RyCINs~sL~  122 (143)
T d1xm0a1          98 HLGHVFNDGPGPNG----------------LRYCINSAALR  122 (143)
T ss_dssp             CCCEEEESCSSSSC----------------EEEECCGGGEE
T ss_pred             ccCccCCCCCCCCC----------------cEeeeeeeeEE
Confidence            99999999998876                89999999997