Citrus Sinensis ID: 033140

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVANRDLWATHSLAFDY
Secondary Structure (PSIPRED)
ccccccccccccEEccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccHHHHHccccccccccccHHccccccccccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccHHHHHHHccHHHHccccccccccHHHHHHHHHHccccHHccHHHHHHcHccccc
Coil and Loop (DISEMBL)
mslslqgchrlrgrragsslyldvhivvdpfssvsaahgvgenvrhqihkshpevsevfihidpayfqfspstmdqlglegckahssnicvddldIDAVVYNTlstkfpevanrdlWATHSLAFDY
Flexible Loop (DISEMBL)
mslslqgcHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLStkfpevanrdlWATHSLAFDY
Low Complexity Region (SEG)
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVANRDLWATHSLAFDY
Disordered region (IsUnstruct)
**************RAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVANRDLWATHSLA***
Disordered Region (DISOPRED)
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF***********************VDDLDIDAVVYNTLSTKFPEVANRDLWATHSLAFDY
Disordered Region (DISEMBL)
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVANRDLWATHSLAFDY
Disordered Region (DISPRO)
*****QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVANRDLWATHSLAFDY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVANRDLWATHSLAFDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q8L725	471	Metal tolerance protein C	yes	no	0.809	0.216	0.622	5e-30
Q10LJ2	389	Metal tolerance protein 2	yes	no	0.468	0.151	0.745	8e-20

>sp|Q8L725|MTPC1_ARATH Metal tolerance protein C1 OS=Arabidopsis thaliana GN=MTPC1 PE=2 SV=1

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 78/106 (73%), Gaps = 4/106 (3%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct: 307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIDP 366

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
           A+ QFS ST D   +       SNIC +   ++A V +  S++  E
Sbjct: 367 AFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSE 408

Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q10LJ2|MTP2_ORYSJ Metal tolerance protein 2 OS=Oryza sativa subsp. japonica GN=MTP2 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 51/59 (86%)

Query: 4   SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62
            ++GCHRLRGR+AG+SLYLDVHI V PF SVSAAH +GE VRHQI KSH +V+EVFIHI
Sbjct: 320 GVKGCHRLRGRKAGTSLYLDVHIEVYPFLSVSAAHDIGETVRHQIQKSHNQVAEVFIHI 378

Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
224132372	453	metal tolerance protein [Populus trichoc	0.849	0.236	0.638	2e-32
359479745	520	PREDICTED: metal tolerance protein C1 [V	0.833	0.201	0.663	9e-31
297828503	462	hypothetical protein ARALYDRAFT_322424 [	0.928	0.253	0.601	2e-30
255559272	479	cation efflux protein/ zinc transporter,	0.793	0.208	0.594	6e-29
449436799	500	PREDICTED: metal tolerance protein C1-li	0.817	0.206	0.605	2e-28
30690801	471	metal tolerance protein C1 [Arabidopsis	0.809	0.216	0.622	4e-28
30690804	468	metal tolerance protein C1 [Arabidopsis	0.809	0.217	0.622	4e-28
356500266	491	PREDICTED: metal tolerance protein C1-li	0.833	0.213	0.596	2e-26
356535392	490	PREDICTED: metal tolerance protein C1-li	0.833	0.214	0.574	1e-25
3738295	483	unknown protein [Arabidopsis thaliana]	0.809	0.211	0.559	2e-25

>gi|224132372|ref|XP_002321323.1| metal tolerance protein [Populus trichocarpa] gi|222862096|gb|EEE99638.1| metal tolerance protein [Populus trichocarpa]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 81/108 (75%), Gaps = 1/108 (0%)

Query: 4   SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63
            +QGCHRLRGRRAGSSLYLDVHIVVDPF SVSAAH +GENVR +IH SHP ++EVFIHID
Sbjct: 284 GVQGCHRLRGRRAGSSLYLDVHIVVDPFLSVSAAHEIGENVRQEIHNSHPGIAEVFIHID 343

Query: 64  PAYFQFSPSTMDQ-LGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
           PAY   SP+ MDQ   L G    +  I +DD DI+ +V +  S+K PE
Sbjct: 344 PAYLCISPTMMDQEENLNGKVNQNKKISLDDKDIELIVSDVFSSKIPE 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479745|ref|XP_002269478.2| PREDICTED: metal tolerance protein C1 [Vitis vinifera] gi|296086610|emb|CBI32245.3| unnamed protein product [Vitis vinifera]

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 81/107 (75%), Gaps = 2/107 (1%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHI VDPFSSVSAAH VGENVRHQIHKSHP VSEVFIHIDP
Sbjct: 331 VKGCHRLRGRRAGSSLYLDVHIEVDPFSSVSAAHNVGENVRHQIHKSHPGVSEVFIHIDP 390

Query: 65  AYFQFSPSTMDQL-GLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
           A  Q SPS M+Q   L+       N+  +   ++ +V N LS+KF E
Sbjct: 391 AISQISPSIMEQQENLKEMNYQKRNVSSEHNGVE-IVSNVLSSKFSE 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828503|ref|XP_002882134.1| hypothetical protein ARALYDRAFT_322424 [Arabidopsis lyrata subsp. lyrata] gi|297327973|gb|EFH58393.1| hypothetical protein ARALYDRAFT_322424 [Arabidopsis lyrata subsp. lyrata]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/118 (60%), Positives = 83/118 (70%), Gaps = 1/118 (0%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct: 295 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINMNHPEVSEVFIHIDP 354

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVANRDLWATHSL 122
           A+ QFS STMD   +       SNIC +   ++A V +  S++F E        TH L
Sbjct: 355 AFLQFSCSTMDHDSITKSN-QESNICQEIKHVEATVSDIFSSQFSEKMTIKRITTHLL 411

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559272|ref|XP_002520656.1| cation efflux protein/ zinc transporter, putative [Ricinus communis] gi|223540041|gb|EEF41618.1| cation efflux protein/ zinc transporter, putative [Ricinus communis]

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 78/106 (73%), Gaps = 6/106 (5%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSL+LDVHI VDPF SVSAAH +GE VR +IH+S+PE++EVFIHIDP
Sbjct: 310 VKGCHRLRGRRAGSSLHLDVHIEVDPFLSVSAAHEIGEKVRQEIHESYPEIAEVFIHIDP 369

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
           AY  FS +      +EG       I +DD DI  ++ NT  +KFPE
Sbjct: 370 AYLHFSSN------VEGTADQDRYISLDDKDIAMIISNTFLSKFPE 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436799|ref|XP_004136180.1| PREDICTED: metal tolerance protein C1-like [Cucumis sativus] gi|449524166|ref|XP_004169094.1| PREDICTED: metal tolerance protein C1-like [Cucumis sativus]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 79/109 (72%), Gaps = 6/109 (5%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHI VDPF SVSAAH +GENVRH+IH SHPEVSEVFIHIDP
Sbjct: 326 VKGCHRLRGRRAGSSLYLDVHIEVDPFLSVSAAHSIGENVRHEIHTSHPEVSEVFIHIDP 385

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVD---DLDIDAVVYNTLSTKFPE 110
           +   F P   +Q   +   A +SN   D     +I+A V + + +KFPE
Sbjct: 386 SISHFPPKLSNQ---QAASAGTSNQSTDFPLTENIEATVSDIVQSKFPE 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690801|ref|NP_182304.2| metal tolerance protein C1 [Arabidopsis thaliana] gi|71151963|sp|Q8L725.1|MTPC1_ARATH RecName: Full=Metal tolerance protein C1; Short=AtMTPc1; AltName: Full=AtMTP6 gi|22655099|gb|AAM98140.1| unknown protein [Arabidopsis thaliana] gi|30387579|gb|AAP31955.1| At2g47830 [Arabidopsis thaliana] gi|330255799|gb|AEC10893.1| metal tolerance protein C1 [Arabidopsis thaliana]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 78/106 (73%), Gaps = 4/106 (3%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct: 307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIDP 366

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
           A+ QFS ST D   +       SNIC +   ++A V +  S++  E
Sbjct: 367 AFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSE 408

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690804|ref|NP_850480.1| metal tolerance protein C1 [Arabidopsis thaliana] gi|330255800|gb|AEC10894.1| metal tolerance protein C1 [Arabidopsis thaliana]

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 78/106 (73%), Gaps = 4/106 (3%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct: 307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIDP 366

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
           A+ QFS ST D   +       SNIC +   ++A V +  S++  E
Sbjct: 367 AFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSE 408

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500266|ref|XP_003518954.1| PREDICTED: metal tolerance protein C1-like [Glycine max]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 78/109 (71%), Gaps = 4/109 (3%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGS LYLDVHI VDPFSSVSAAH +GENVRHQIHKSHP V EVFIHIDP
Sbjct: 319 VKGCHRLRGRRAGSYLYLDVHIEVDPFSSVSAAHDIGENVRHQIHKSHPTVVEVFIHIDP 378

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNI-CVDDLDIDAVVYNTLSTKFPEVA 112
           A    S     Q    G   HSS +   +D +I  +V + +S+ FP+++
Sbjct: 379 AMSHVS---CQQDSWSGGMDHSSIVPAEEDSNIKGIVSDIISSNFPQMS 424

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535392|ref|XP_003536229.1| PREDICTED: metal tolerance protein C1-like [Glycine max]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/108 (57%), Positives = 79/108 (73%), Gaps = 3/108 (2%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCH LRGRRAGS LYLDVHI VDPFSSVSAAH +GENVRHQIHKSHP V EVFIHIDP
Sbjct: 319 VKGCHCLRGRRAGSYLYLDVHIEVDPFSSVSAAHDIGENVRHQIHKSHPTVVEVFIHIDP 378

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVA 112
           A    S ++  +    G    SS +  +D +I+ +V + +S+ FP+++
Sbjct: 379 A---MSHASHQRDSWSGDMNQSSIVPAEDSNIEGIVSDIISSNFPQMS 423

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3738295|gb|AAC63637.1| unknown protein [Arabidopsis thaliana]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 78/118 (66%), Gaps = 16/118 (13%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI-- 62
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHI  
Sbjct: 307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIGI 366

Query: 63  ----------DPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
                     DPA+ QFS ST D   +       SNIC +   ++A V +  S++  E
Sbjct: 367 EHLSSQTFLADPAFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSE 420

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2043328	471	AT2G47830 [Arabidopsis thalian	0.809	0.216	0.622	1.3e-28
TIGR_CMR|CBU_1362	378	CBU_1362 "cation-efflux family	0.444	0.148	0.482	2e-07
TIGR_CMR|GSU_2613	296	GSU_2613 "cation efflux family	0.444	0.189	0.357	5.5e-06
UNIPROTKB|Q4K5J6	298	fieF "Cation diffusion facilit	0.452	0.191	0.344	3.3e-05
TIGR_CMR|CHY_0502	303	CHY_0502 "cation efflux family	0.436	0.181	0.357	4.4e-05
TIGR_CMR|DET_0331	311	DET_0331 "cation efflux family	0.595	0.241	0.308	7.6e-05
TIGR_CMR|SO_4475	296	SO_4475 "cation efflux family	0.507	0.216	0.343	0.00015
TIGR_CMR|BA_4640	298	BA_4640 "cation efflux family	0.420	0.177	0.333	0.00041
ASPGD|ASPL0000052398	401	AN10155 [Emericella nidulans (	0.412	0.129	0.339	0.00085

TAIR|locus:2043328 AT2G47830 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.3e-28, P = 1.3e-28
 Identities = 66/106 (62%), Positives = 78/106 (73%)

Query:     5 LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct:   307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIDP 366

Query:    65 AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
             A+ QFS ST D   +       SNIC +   ++A V +  S++  E
Sbjct:   367 AFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSE 408

GO:0006812 "cation transport" evidence=IEA;ISS

GO:0008324 "cation transmembrane transporter activity" evidence=IEA;ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TIGR_CMR|CBU_1362 CBU_1362 "cation-efflux family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query:     9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             H+LR R  G ++++DVHI V P  SVS  H VGE V   + KS   V++V +HIDP
Sbjct:   237 HQLRTRYHGGNIFVDVHIQVAPDISVSEGHYVGEQVHLTLLKSVEHVADVTVHIDP 292

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

TIGR_CMR|GSU_2613 GSU_2613 "cation efflux family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 111 (44.1 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query:     9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             H +RGRR+G  + +D+ + +DP  +V  +H +   V+  I +  P V +V IHI+P
Sbjct:   230 HEIRGRRSGQYIIIDLKLDMDPEMTVKQSHDIATCVKKLIFERFPNVGDVMIHINP 285

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q4K5J6 fieF "Cation diffusion facilitator family transporter FieF" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 104 (41.7 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query:     7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             G H LR R +GS  ++ +H+ +    ++S AHG+ +     I K++P  +EV +H DP
Sbjct:   232 GAHDLRTRISGSHWFVQLHLELPGELTLSVAHGISDQAADAIQKAYPR-AEVLVHADP 288

GO:0005506 "iron ion binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

TIGR_CMR|CHY_0502 CHY_0502 "cation efflux family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 103 (41.3 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query:     9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             H+LR R++GS  ++D+H+VV    SV   H +   +  +I +  P  S V IH +P
Sbjct:   230 HKLRARKSGSERFIDLHLVVPEKLSVKEVHDLCNKIEREIEEKLPN-SHVLIHAEP 284

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

TIGR_CMR|DET_0331 DET_0331 "cation efflux family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 101 (40.6 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 25/81 (30%), Positives = 43/81 (53%)

Query:     9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQ 68
             H LR R+AGS  Y+D+H+V+    SV  AH + +++   + K   ++  V IH++P   +
Sbjct:   230 HNLRTRKAGSYRYVDLHLVMPKTLSVEKAHSICDHLEKDL-KDKLKIDYVTIHVEPCTEE 288

Query:    69 FSPSTMDQLGLEGCKAHSSNI 89
               P    Q+    CK   S++
Sbjct:   289 NCPEC--QIN---CKKRPSDL 304

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

TIGR_CMR|SO_4475 SO_4475 "cation efflux family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 98 (39.6 bits), Expect = 0.00015, P = 0.00015
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query:     7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66
             G H LR R+AG ++++  H+ +D   S++ AH + +    ++ K+  E +EV IH DP  
Sbjct:   232 GLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRV-KAAFEDAEVIIHQDPV- 289

Query:    67 FQFSPST 73
              Q  P+T
Sbjct:   290 -QVEPTT 295

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

TIGR_CMR|BA_4640 BA_4640 "cation efflux family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 94 (38.1 bits), Expect = 0.00041, P = 0.00041
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query:    11 LRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             L  R  G  + +D+ + VDP+ +V   H +G++V+  + K    V  VF+HI+P
Sbjct:   242 LYAREHGHYVIVDIKVSVDPYITVEEGHRIGKHVKETLMKQD-NVQNVFVHINP 294

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

ASPGD|ASPL0000052398 AN10155 [Emericella nidulans (taxid:162425)]

 Score = 93 (37.8 bits), Expect = 0.00085, P = 0.00085
 Identities = 18/53 (33%), Positives = 33/53 (62%)

Query:    11 LRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63
             +R   +G  L ++V IV+DP  S+ A H V E ++ ++ +S P+V   ++H+D
Sbjct:   335 VRAYTSGPRLVVEVDIVMDPSDSLRATHDVAEELQTKL-ESLPDVERAYVHVD 386


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126       126   0.00091  102 3  11 22  0.50    30
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  135 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.89u 0.11s 14.00t   Elapsed:  00:00:02
  Total cpu time:  13.89u 0.11s 14.00t   Elapsed:  00:00:02
  Start:  Fri May 10 15:35:16 2013   End:  Fri May 10 15:35:18 2013

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008324 "cation transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q10LJ2	MTP2_ORYSJ	No assigned EC number	0.7457	0.4682	0.1516	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
COG0053	304	COG0053, MMT1, Predicted Co/Zn/Cd cation transport	9e-14
TIGR01297	268	TIGR01297, CDF, cation diffusion facilitator famil	4e-12
pfam01545	273	pfam01545, Cation_efflux, Cation efflux family	1e-10
PRK09509	299	PRK09509, fieF, ferrous iron efflux protein F; Rev	0.001

>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

 Score = 65.4 bits (160), Expect = 9e-14
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query: 6   QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
           +G H LR R++GS +++DVHI VDP  S+  AH + + V  +I K  P+V++V IH++P 
Sbjct: 231 KGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPL 290

Length = 304

>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter

 Score = 60.3 bits (147), Expect = 4e-12
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 6   QGCHRLRGRRAGSS-LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           +G H L   R G   L+LDVH+VVDP   +  AH +   +  +I K HP +  V I ++P
Sbjct: 208 KGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEP 267

Query: 65  A 65
            
Sbjct: 268 C 268

This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence [Transport and binding proteins, Cations and iron carrying compounds]. Length = 268

>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 20/60 (33%), Positives = 36/60 (60%)

Query: 7   GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66
           G H LR  ++G   ++D+HI VDP  +V  AH + + +   + +  P +++V IH++PA 
Sbjct: 211 GVHDLRVWKSGPKYFVDIHIEVDPDLTVEEAHEIADEIERALKEKFPGIADVTIHVEPAP 270

Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells. Length = 273

>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 6   QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
            G H LR R++G + ++ +H+ ++    +  AH + + V   + +  P  S+V IH DP
Sbjct: 229 SGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPG-SDVIIHQDP 286

Length = 299

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
COG0053	304	MMT1 Predicted Co/Zn/Cd cation transporters [Inorg	99.55
TIGR01297	268	CDF cation diffusion facilitator family transporte	99.47
PRK09509	299	fieF ferrous iron efflux protein F; Reviewed	99.43
PF01545	284	Cation_efflux: Cation efflux family; InterPro: IPR	99.29
PRK03557	312	zinc transporter ZitB; Provisional	99.18
KOG1485	412	consensus Mitochondrial Fe2+ transporter MMT1 and	98.06
COG1230	296	CzcD Co/Zn/Cd efflux system component [Inorganic i	97.31
KOG1482	379	consensus Zn2+ transporter [Inorganic ion transpor	97.21
KOG1483	404	consensus Zn2+ transporter ZNT1 and related Cd2+/Z	95.93
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	94.01
PRK10597	81	DNA damage-inducible protein I; Provisional	87.49
PF09580	177	Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ	85.03
PF03780	108	Asp23: Asp23 family; InterPro: IPR005531 This entr	84.77
PF06183	65	DinI: DinI-like family; InterPro: IPR010391 This f	80.38

>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

Probab=99.55  E-value=2.5e-14  Score=116.71  Aligned_cols=70  Identities=37%  Similarity=0.643  Sum_probs=66.2

Q ss_pred             CCCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCC
Q 033140            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSP   71 (126)
Q Consensus         2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~~~   71 (126)
                      +|||.++|++|+|+.|+.+++|+|++|+|+||+.+||+|++++|++|++.+|.+.+++||+||.......
T Consensus       227 ~~~V~~v~~lr~R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~~  296 (304)
T COG0053         227 VPGVKGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEEE  296 (304)
T ss_pred             CCcceeeecceeeeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccccc
Confidence            5899999999999999999999999999999999999999999999999999889999999999876543

>TIGR01297 CDF cation diffusion facilitator family transporter

Probab=99.47  E-value=2.4e-13  Score=106.62  Aligned_cols=64  Identities=36%  Similarity=0.648  Sum_probs=61.8

Q ss_pred             CCCcceeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecC
Q 033140            2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA   65 (126)
Q Consensus         2 vpgV~~Vh~LR~R~~G~-~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~   65 (126)
                      .|||.++|++|+|+.|+ .+++++|+.+++++|+.++|++++++|+++++++|++.+|+||+||+
T Consensus       204 ~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~  268 (268)
T TIGR01297       204 IPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC  268 (268)
T ss_pred             CCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            58999999999999999 99999999999999999999999999999999999999999999994

This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.

>PRK09509 fieF ferrous iron efflux protein F; Reviewed

Probab=99.43  E-value=6.8e-13  Score=107.04  Aligned_cols=65  Identities=26%  Similarity=0.528  Sum_probs=61.7

Q ss_pred             CCCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 033140            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (126)
Q Consensus         2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~   67 (126)
                      +|||.++|++|+|++|+..++++||.+++++++.|+|+|++++|++|++++|. .+++||+||+..
T Consensus       225 ~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~-~~v~ihveP~~~  289 (299)
T PRK09509        225 WPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPG-SDVIIHQDPCSV  289 (299)
T ss_pred             CCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEEeCCCCC
Confidence            58999999999999999999999999999999999999999999999999996 579999999763

>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt

Probab=99.29  E-value=2.5e-11  Score=95.59  Aligned_cols=66  Identities=29%  Similarity=0.489  Sum_probs=62.6

Q ss_pred             CCCcceeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 033140            2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (126)
Q Consensus         2 vpgV~~Vh~LR~R~~G~-~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~   67 (126)
                      .|||.+++++|+|+.|+ .+++++++.++++++++++|++.+++++.+++++|++.+++||++|+..
T Consensus       217 ~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~  283 (284)
T PF01545_consen  217 VPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE  283 (284)
T ss_dssp             TSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred             CCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence            48999999999999999 9999999999999999999999999999999999999999999999864

These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.

>PRK03557 zinc transporter ZitB; Provisional

Probab=99.18  E-value=1.3e-10  Score=94.70  Aligned_cols=61  Identities=10%  Similarity=0.165  Sum_probs=57.1

Q ss_pred             CCCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (126)
Q Consensus         2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~   66 (126)
                      +|||.++|++|+|++|+.+++++|+.+++++   ++|+|++++|++|+++++ +.+++||+||..
T Consensus       233 ~~gV~~vh~l~~~~~G~~~~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~-i~~vtIh~e~~~  293 (312)
T PRK03557        233 IPEVRNVHHVHVWMVGEKPVMTLHVQVIPPH---DHDALLDRIQDYLMHHYQ-IEHATIQMEYQP  293 (312)
T ss_pred             CCCceeEEEEEEEEeCCeEEEEEEEEECCCC---CHHHHHHHHHHHHHHhCC-CCEEEEEeccCc
Confidence            6999999999999999999999999999986   679999999999999987 799999999975

>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]

Probab=98.06  E-value=1.2e-05  Score=68.65  Aligned_cols=64  Identities=34%  Similarity=0.591  Sum_probs=59.3

Q ss_pred             CCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 033140            3 LSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (126)
Q Consensus         3 pgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~   67 (126)
                      +.+..++.+|++..|..++|++||++++++++..||+|.+.+++.|.. +|.+.+++||+|-...
T Consensus       339 ~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~-l~ever~fvh~d~e~~  402 (412)
T KOG1485|consen  339 KLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIEL-LPEVERAFVHIDYEFL  402 (412)
T ss_pred             CccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHHHHHHHHhh-cchheeeeeecCcccc
Confidence            468899999999999999999999999999999999999999999975 9999999999986654

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]

Probab=97.31  E-value=0.00084  Score=55.26  Aligned_cols=61  Identities=18%  Similarity=0.268  Sum_probs=51.8

Q ss_pred             CCCcceeeeEEEEee-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140            2 SLSLQGCHRLRGRRA-GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (126)
Q Consensus         2 vpgV~~Vh~LR~R~~-G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~   66 (126)
                      .|||.++|++++|.. |....+.+|+.+++..+-++   +.+++++.+.+++. +.++||++|+..
T Consensus       234 ~~~v~~vhdlHvWsi~~~~~~~t~Hv~v~~~~~~~~---~~~~~~~~l~~~~~-I~hvTiQ~e~~~  295 (296)
T COG1230         234 IPGVASVHDLHVWSITGGEHALTLHVVVDEVADADA---ALDQIVRRLLEKYG-IEHVTIQLETEG  295 (296)
T ss_pred             CCCccceeecccCCCCCCceeEEEEEEecCccchHH---HHHHHHHHHhhhcC-cceEEEEecCCC
Confidence            699999999999999 55799999999995544433   88899999988887 899999998753

>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]

Probab=97.21  E-value=0.0016  Score=55.22  Aligned_cols=64  Identities=23%  Similarity=0.288  Sum_probs=57.1

Q ss_pred             CCCcceeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCC
Q 033140            2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF   69 (126)
Q Consensus         2 vpgV~~Vh~LR~R~~G~-~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~   69 (126)
                      ++||..||+|++|...- +..+.+||.++++   +++.+|-+++.+.|+++|. +.+++|++||.....
T Consensus       306 iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~---ad~~~vL~~~~~~i~~~~~-~~~vTiQie~~~~~~  370 (379)
T KOG1482|consen  306 IEGVKAVHDLHIWSITVGKVALSVHLAIDSE---ADAEEVLDEARSLIKRRYG-ISHVTIQIEPYTEEM  370 (379)
T ss_pred             hcceeEEEEEEEEEEecCceEEEEEEeecCC---CCHHHHHHHHHHHHHhhcc-eEEEEEEecCCccch
Confidence            58999999999999865 7899999999966   6788899999999999998 799999999998654

>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]

Probab=95.93  E-value=0.029  Score=47.94  Aligned_cols=60  Identities=18%  Similarity=0.233  Sum_probs=48.8

Q ss_pred             CCCcceeeeEEEEee-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140            2 SLSLQGCHRLRGRRA-GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (126)
Q Consensus         2 vpgV~~Vh~LR~R~~-G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~   66 (126)
                      +|||..||++.+|+. |.++.+.+||.++--   .+--++++.|++-+. .++ |..+||+.|=..
T Consensus       311 ~~gv~~vh~lhvWqL~~~r~IAt~Hi~~~~p---~~~~~~a~~ir~~fh-~~G-Ihs~TiqPeF~~  371 (404)
T KOG1483|consen  311 VPGVISVHDLHVWQLAGSRIIATIHIQIQNP---KEYMKIAEKIRSYFH-DQG-IHSTTIQPEFAP  371 (404)
T ss_pred             CcceeeeeeeeeeeeccceEEEEEEEEecCc---HHHHHHHHHHHHHHH-hcC-Ccceeeccchhh
Confidence            699999999999998 889999999999754   223389999988886 466 788998766554

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=94.01  E-value=1.2  Score=30.04  Aligned_cols=63  Identities=14%  Similarity=0.114  Sum_probs=52.2

Q ss_pred             CCCcceeeeEEEEeeCCEEEEEEEEEECCCCC--HHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSS--VSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (126)
Q Consensus         2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~ls--v~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~   66 (126)
                      +|++.+-..|.+.+.|..=.+.+.+++.+..+  ..+..+++++|+++|+..++ + .+.|++-|..
T Consensus        16 ~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lg-v-~~~V~lv~~g   80 (96)
T PF14535_consen   16 FPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLG-V-RPEVELVPPG   80 (96)
T ss_dssp             STTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHS-S--EEEEEE-TT
T ss_pred             CcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcC-c-eEEEEEECCC
Confidence            57888888999999999889999999999874  57899999999999999988 4 4677776664

>PRK10597 DNA damage-inducible protein I; Provisional

Probab=87.49  E-value=5.2  Score=27.11  Aligned_cols=70  Identities=17%  Similarity=0.234  Sum_probs=44.7

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCee-EEEEEEecCCCCCCCCcccccCccccccCCCCcccCchhhHHHH
Q 033140           22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVS-EVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVV  100 (126)
Q Consensus        22 VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~-~V~IHieP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v  100 (126)
                      |++.+.=...++-....+|..++.++|...||... +|.|  -|....       ++.+.|...      -+...|+.++
T Consensus         3 VEi~~dK~~~lp~ga~~AL~~EL~kRl~~~fPd~~~~v~V--r~~s~n-------~lsv~g~~k------~dK~~i~eiL   67 (81)
T PRK10597          3 IEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSV--RYAAAN-------NLSVIGATK------EDKDRISEIL   67 (81)
T ss_pred             EEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCccEEE--eecCCC-------ceEecCCCc------chHHHHHHHH
Confidence            44444444677777888999999999999999742 3555  444333       334433320      1345588888


Q ss_pred             HHHhhh
Q 033140          101 YNTLST  106 (126)
Q Consensus       101 ~~~~~~  106 (126)
                      .++..+
T Consensus        68 qE~we~   73 (81)
T PRK10597         68 QETWES   73 (81)
T ss_pred             HHHHhC
Confidence            877766

>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis

Probab=85.03  E-value=3.2  Score=30.72  Aligned_cols=59  Identities=14%  Similarity=0.321  Sum_probs=48.2

Q ss_pred             CcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140            4 SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (126)
Q Consensus         4 gV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~   66 (126)
                      .+.+|.+..+--+|...+|-+.+.-.    -.....|..+|+++++..+|.+..|.|--+|.-
T Consensus        86 ~~~~V~~A~vvv~~~~a~Vav~~~~~----~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~~  144 (177)
T PF09580_consen   86 KVPGVEDATVVVTDDNAYVAVDLDFN----RFNTKKIKKKVEKAVKSADPRIYNVYVSTDPDI  144 (177)
T ss_pred             cCCCceEEEEEEECCEEEEEEEeccc----ccchhHHHHHHHHHHHHhCCCccEEEEEcCHHH
Confidence            46677778888889999998888832    345668999999999999999889999877764

Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.

>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family

Probab=84.77  E-value=9.7  Score=25.65  Aligned_cols=53  Identities=25%  Similarity=0.424  Sum_probs=36.3

Q ss_pred             EEEEee-CCEEEEEEEEEECCCCCHHH-HHHHHHHHHHHHHhhCC-CeeEEEEEEe
Q 033140           11 LRGRRA-GSSLYLDVHIVVDPFSSVSA-AHGVGENVRHQIHKSHP-EVSEVFIHID   63 (126)
Q Consensus        11 LR~R~~-G~~~~VdlhI~Vd~~lsv~e-AH~I~~~IE~~I~~~~p-~v~~V~IHie   63 (126)
                      ++++.- +..+.+++++.+..+.++.+ +.++-++|++.|....+ .+.+|.|++.
T Consensus        50 v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~  105 (108)
T PF03780_consen   50 VKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE  105 (108)
T ss_pred             eEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence            566655 78899999999999988765 45556666666655433 1346666654

These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].

>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins

Probab=80.38  E-value=2.1  Score=27.64  Aligned_cols=56  Identities=20%  Similarity=0.385  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCCCcccccCccccccCCCCcccCchhhHHHHHHHhhh
Q 033140           35 SAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLST  106 (126)
Q Consensus        35 ~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~  106 (126)
                      ....+|..++.++|...||+ ..|.|.  +...       .++.+.|...      -+...|+.++.+++.+
T Consensus         4 ga~~AL~~EL~kRl~~~yPd-~~v~Vr--~~s~-------~~l~v~g~~~------~~k~~i~~iLqe~we~   59 (65)
T PF06183_consen    4 GALEALESELTKRLHRQYPD-AEVRVR--PGSA-------NGLSVSGGKK------DDKERIEEILQEMWED   59 (65)
T ss_dssp             THHHHHHHHHHHHHHHH-SS--EEEEE--EESS--------EEEEES--H------HHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHCCC-ceEeee--eccc-------CccccCCcCc------hHHHHHHHHHHHHHhc
Confidence            34567889999999999997 566664  3332       2444444430      1144577777777655

The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
3j1z_P	306	Inward-facing Conformation Of The Zinc Transporter		8e-05
2zzt_A	107	Crystal Structure Of The Cytosolic Domain Of The Ca		2e-04

>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip Revealed By Cryo-electron Microscopy Length = 306

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 7   GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66
           G H LR R+AG ++++  H+ +D   S++ AH + +    ++ K+  E +EV IH DP  
Sbjct: 232 GLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRV-KAAFEDAEVIIHQDPV- 289
Query: 67  FQFSPST 73
            Q  P+T
Sbjct: 290 -QVEPTT 295

>pdb|2ZZT|A Chain A, Crystal Structure Of The Cytosolic Domain Of The Cation Diffusion Facilitator Family Protein Length = 107

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 9  HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
          HR+R RR G+  +++  I VD   SV  AH +   +R +  K   ++ +V IH++P
Sbjct: 29 HRVRIRRVGTKYFIEXDIEVDGKXSVKDAHELTVKIRKEXLKRRDDIEDVTIHVEP 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
2zzt_A	107	Putative uncharacterized protein; cation diffusion	6e-20
3byp_A	94	CZRB protein; membrane protein, zinc transporter,	1e-17
3h90_A	283	Ferrous-iron efflux pump FIEF; membrane protein, z	3e-15

>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} Length = 107

 Score = 77.5 bits (191), Expect = 6e-20
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 6  QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
             HR+R RR G+  ++++ I VD   SV  AH +   +R ++ K   ++ +V IH++P 
Sbjct: 26 HNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPL 85

Query: 66 Y 66
           
Sbjct: 86 G 86

>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A Length = 94

 Score = 71.2 bits (175), Expect = 1e-17
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 7  GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
            H L+ RRAG   +L+ H+VV   + V  AH + + +   + ++ P + +  IH++P 
Sbjct: 29 EVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPE 86

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Length = 283

 Score = 68.7 bits (169), Expect = 3e-15
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 7   GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
           G H LR R++G + ++ +H+ ++    +  AH V + V   I +  P   +V IH DP 
Sbjct: 223 GAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGS-DVIIHQDPC 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
2zzt_A	107	Putative uncharacterized protein; cation diffusion	99.7
3byp_A	94	CZRB protein; membrane protein, zinc transporter,	99.67
3j1z_P	306	YIIP, cation efflux family protein; zinc transport	99.58
3h90_A	283	Ferrous-iron efflux pump FIEF; membrane protein, z	99.51
1ghh_A	81	DINI, DNA-damage-inducible protein I; bicelle, dip	82.13

>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}

Probab=99.70  E-value=1.1e-16  Score=110.93  Aligned_cols=66  Identities=29%  Similarity=0.477  Sum_probs=62.4

Q ss_pred             CCCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 033140            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (126)
Q Consensus         2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~   67 (126)
                      +|||.+||+||+|++|+.+++++||.|++++|+.+||+|+++|++.|+++||.+.+++||+||...
T Consensus        22 ~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtIhvEp~~~   87 (107)
T 2zzt_A           22 FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPLGN   87 (107)
T ss_dssp             CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTC
T ss_pred             CCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEEecCCC
Confidence            699999999999999999999999999999999999999999999999999988899999999764

>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A

Probab=99.67  E-value=4.5e-16  Score=104.45  Aligned_cols=63  Identities=27%  Similarity=0.486  Sum_probs=60.5

Q ss_pred             CCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140            3 LSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (126)
Q Consensus         3 pgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~   66 (126)
                      |||.+||+||+|++|+.+++++||.|++++|+.++|+|+++|++.|+++||.+ +++||+||..
T Consensus        25 ~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~-~vtIh~ep~~   87 (94)
T 3byp_A           25 GRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPEG   87 (94)
T ss_dssp             TTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-EEEEEEEECC
T ss_pred             CCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC-EEEEEeCCCC
Confidence            89999999999999999999999999999999999999999999999999975 9999999954

>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}

Probab=99.58  E-value=2.1e-15  Score=120.83  Aligned_cols=70  Identities=26%  Similarity=0.488  Sum_probs=65.8

Q ss_pred             CCCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCCC
Q 033140            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPS   72 (126)
Q Consensus         2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~~~~   72 (126)
                      .|||.+||++|+|++|+.+++++||+||+++|+.++|+|++++|++|++++|. .+++||+||+..++.+|
T Consensus       227 ~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~-~~v~IhveP~~~ePt~~  296 (306)
T 3j1z_P          227 DPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFED-AEVIIHQDPVQVEPTTQ  296 (306)
T ss_dssp             STTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTT-CEEEECCEETTSCCCCC
T ss_pred             CCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-CeEEEEeCCCCCCCCcc
Confidence            58999999999999999999999999999999999999999999999999994 79999999998776554

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A

Probab=99.51  E-value=9.2e-14  Score=109.51  Aligned_cols=65  Identities=29%  Similarity=0.544  Sum_probs=62.3

Q ss_pred             CCCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 033140            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (126)
Q Consensus         2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~   67 (126)
                      +|||.++|++|+|++|+.+++++||.+++++|+.++|+|++++|+.|++++|. .+++||+||+..
T Consensus       218 ~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v~ih~ep~~~  282 (283)
T 3h90_A          218 WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCSV  282 (283)
T ss_dssp             SSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEEEEEEECSCC
T ss_pred             CCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeEEEEeccCCC
Confidence            58999999999999999999999999999999999999999999999999997 799999999864

>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1

Probab=82.13  E-value=2.6  Score=27.57  Aligned_cols=71  Identities=17%  Similarity=0.230  Sum_probs=44.8

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCe-eEEEEEEecCCCCCCCCcccccCccccccCCCCcccCchhhHHH
Q 033140           21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV-SEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAV   99 (126)
Q Consensus        21 ~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v-~~V~IHieP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   99 (126)
                      .|++.+.=...++-....+|..++.++|...||+. .+|.|  -|...       .++.+.|..      -.+.+.|+.+
T Consensus         2 rVEi~~dK~~~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~V--r~~s~-------n~lsV~g~~------k~dKe~i~ei   66 (81)
T 1ghh_A            2 RIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSV--RYAAA-------NNLSVIGAT------KEDKQRISEI   66 (81)
T ss_dssp             EEEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEE--EEESS-------CEEEEESCC------HHHHHHHHHH
T ss_pred             eEEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCceEEE--eecCC-------CceeecCCC------hhHHHHHHHH
Confidence            34555544456777888999999999999999974 25655  34432       233443332      1145567777


Q ss_pred             HHHHhhh
Q 033140          100 VYNTLST  106 (126)
Q Consensus       100 v~~~~~~  106 (126)
                      +.++..+
T Consensus        67 LqE~we~   73 (81)
T 1ghh_A           67 LQETWES   73 (81)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhC
Confidence            7777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d3bypa1	82	d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {	2e-17
d2qfia1	82	d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF	1e-15

>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Putative Zinc transporter CzrB
species: Thermus thermophilus [TaxId: 274]

 Score = 69.4 bits (170), Expect = 2e-17
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 7  GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
            H L+ RRAG   +L+ H+VV   + V  AH + + +   + ++ P + +  IH++P 
Sbjct: 24 EVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPE 81

>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Ferrous-iron efflux pump FieF (YiiP)
species: Escherichia coli [TaxId: 562]

 Score = 64.7 bits (158), Expect = 1e-15
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 6  QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
           G H LR R++G + ++ +H+ ++    +  AH V + V   I +  P  S+V IH DP 
Sbjct: 21 SGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP-GSDVIIHQDPC 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d3bypa1	82	Putative Zinc transporter CzrB {Thermus thermophil	99.8
d2qfia1	82	Ferrous-iron efflux pump FieF (YiiP) {Escherichia	99.7

>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Putative Zinc transporter CzrB
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=2.7e-19  Score=117.96  Aligned_cols=62  Identities=27%  Similarity=0.517  Sum_probs=59.2

Q ss_pred             CcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140            4 SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (126)
Q Consensus         4 gV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~   66 (126)
                      ++.+||+||+|++|+++|+|+||.||++||+.+||+|+++||++|++.||.+ +++||+||+.
T Consensus        21 ~vv~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~i~~~ve~~i~~~~~~~-~v~vHveP~g   82 (82)
T d3bypa1          21 RALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPEG   82 (82)
T ss_dssp             TCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-EEEEEEEECC
T ss_pred             CceeeeEEEeeEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCC-EEEEEeCCCC
Confidence            5779999999999999999999999999999999999999999999999985 8999999984

>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Ferrous-iron efflux pump FieF (YiiP)
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=3.3e-20  Score=121.93  Aligned_cols=65  Identities=29%  Similarity=0.544  Sum_probs=62.3

Q ss_pred             CCCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 033140            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (126)
Q Consensus         2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~   67 (126)
                      +|||+++|+||+|++|+.+|+|+||.|+++||+.+||+|+++||++|++++|. .+++||+||+..
T Consensus        17 ~~gV~~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~I~~~ie~~l~~~~~~-~~v~iHveP~~~   81 (82)
T d2qfia1          17 WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCSV   81 (82)
T ss_dssp             SSSCSCBCCCCCCTTSCCBCCBSCTTSTTTCSCGGGHHHHHHHHHHTTSSSCC-SSCBCCCCCSCC
T ss_pred             CCCceeeeEEEEEEeCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEEeCCccc
Confidence            69999999999999999999999999999999999999999999999999996 699999999863