Citrus Sinensis ID: 033289

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MAPSSPTRGAASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKLLR
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccccccccEEEEccccEEEEHHHHccccEEEEcccccccccccccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccHHHccccccEEEEEcccccHHHHHHHccccEEEEccccccccccccccEEEEEccccccHHHcc
Coil and Loop (DISEMBL)
mapssptrgaasssatlADAASWYCAIVILALILIGsirgnsladephdydhvmrpgnqllnrrpcdeiyvvgegetlhtisdkcgdpfivernphihdpddvfpglvikiispstprkllr
Flexible Loop (DISEMBL)
mapssptrgaasssaTLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMrpgnqllnrrPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIhdpddvfpglvikiispstprkllr
Low Complexity Region (SEG)
MAPSSPTRGaasssatladaasWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKLLR
Disordered region (IsUnstruct)
****************LADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII**********
Disordered Region (DISOPRED)
*******************AASWYCAIVILALILIGSIRGN***********VMRPGNQLLNRRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPS**RK***
Disordered Region (DISEMBL)
****************LADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKLLR
Disordered Region (DISPRO)
***************T*ADAASWYCAIVILALILIGSIRGNSLAD**HDYDHVMRPGNQLLNRRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPSSPTRGAASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKLLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
224127542	120	predicted protein [Populus trichocarpa]	0.877	0.891	0.7	3e-35
224134687	113	predicted protein [Populus trichocarpa]	0.893	0.964	0.672	1e-34
357515639	116	hypothetical protein MTR_8g043660 [Medic	0.893	0.939	0.639	6e-34
357444101	104	hypothetical protein MTR_1g101680 [Medic	0.803	0.942	0.647	3e-33
255541432	114	conserved hypothetical protein [Ricinus	0.811	0.868	0.688	7e-33
356506314	114	PREDICTED: uncharacterized protein LOC10	0.918	0.982	0.6	3e-32
225469318	113	PREDICTED: uncharacterized protein LOC10	0.860	0.929	0.678	6e-32
351721055	101	uncharacterized protein LOC100500035 pre	0.745	0.900	0.721	8e-32
147767756	113	hypothetical protein VITISV_027722 [Viti	0.860	0.929	0.678	1e-31
351722484	100	uncharacterized protein LOC100500258 pre	0.762	0.93	0.704	2e-31

>gi|224127542|ref|XP_002320100.1| predicted protein [Populus trichocarpa] gi|222860873|gb|EEE98415.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 13  SSATLADAASWYCAIVILALILIGSIRGNS-LADEPHDYDHVMRPGNQLLNRRPCDEIYV 71
           +S ++ADAA+WYCA+V+LALIL  S+R  S   D+ H +D V   GNQ+L+ RPCDEIYV
Sbjct: 12  TSTSIADAATWYCALVLLALILFTSLREASPTYDDDHHHDFVAVKGNQILD-RPCDEIYV 70

Query: 72  VGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKLL 121
           V EGETLHTISDKCGDPFIVE NPHIHDPDDV+PGLVIK I+PS  RKLL
Sbjct: 71  VKEGETLHTISDKCGDPFIVEENPHIHDPDDVYPGLVIK-ITPSRSRKLL 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134687|ref|XP_002321883.1| predicted protein [Populus trichocarpa] gi|222868879|gb|EEF06010.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 91/119 (76%), Gaps = 10/119 (8%)

Query: 5   SPTRGAASSSATLADAASWYCAIVILALILIGSIRGNSL-ADEPHDYDHVMRPGNQLLNR 63
           S ++     S  +AD ASW CAIV+L LIL+GSIR  S+  D+P         G+QL +R
Sbjct: 4   SSSKKTMKISVVIADVASWNCAIVLLCLILLGSIREYSVPKDQP-------VKGSQLFDR 56

Query: 64  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKLLR 122
            PCDEIYVVGEGETLHTISDKCGDPFIVE+NPHIHDPDDVFPGLVIK I+PS PRKLLR
Sbjct: 57  -PCDEIYVVGEGETLHTISDKCGDPFIVEQNPHIHDPDDVFPGLVIK-ITPSRPRKLLR 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515639|ref|XP_003628108.1| hypothetical protein MTR_8g043660 [Medicago truncatula] gi|357515653|ref|XP_003628115.1| hypothetical protein MTR_8g043870 [Medicago truncatula] gi|355522130|gb|AET02584.1| hypothetical protein MTR_8g043660 [Medicago truncatula] gi|355522137|gb|AET02591.1| hypothetical protein MTR_8g043870 [Medicago truncatula]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 85/111 (76%), Gaps = 2/111 (1%)

Query: 1   MAPSSPTRGAASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQL 60
           MA  +  +GA  SS  +A+AASWYCAI ++ALIL+   R +S+   P++ DH M   N  
Sbjct: 1   MATFNSRKGAILSSKAIAEAASWYCAIFLVALILLSIFRDSSMI--PNNNDHNMIESNHF 58

Query: 61  LNRRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 111
           L+ +PCDEIYVVGEGETL+TISDKC DPFIVE NPHIHDPDDVFPGLVIKI
Sbjct: 59  LSSKPCDEIYVVGEGETLNTISDKCNDPFIVENNPHIHDPDDVFPGLVIKI 109

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444101|ref|XP_003592328.1| hypothetical protein MTR_1g101680 [Medicago truncatula] gi|355481376|gb|AES62579.1| hypothetical protein MTR_1g101680 [Medicago truncatula] gi|388493424|gb|AFK34778.1| unknown [Medicago truncatula]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 85/105 (80%), Gaps = 7/105 (6%)

Query: 18  ADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCDEIYVVGEGET 77
            D+ASWYCAI +L +IL+GSIR +++A+       +   GN L + + CDEIYVVGEGET
Sbjct: 6   GDSASWYCAIALLGMILLGSIRESTVAE-------LQVRGNSLGDHKACDEIYVVGEGET 58

Query: 78  LHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKLLR 122
           L+TIS+KCGDPFIVERNPHIHDPDDVFPGLVI+II+P+  RKLL+
Sbjct: 59  LNTISEKCGDPFIVERNPHIHDPDDVFPGLVIRIITPTNTRKLLK 103

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541432|ref|XP_002511780.1| conserved hypothetical protein [Ricinus communis] gi|223548960|gb|EEF50449.1| conserved hypothetical protein [Ricinus communis]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 87/106 (82%), Gaps = 7/106 (6%)

Query: 17  LADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCDEIYVVGEGE 76
           +AD ASWYCA+V++ LIL  S+R  S+ D P++    +  GNQ+L+R PCDEIYVV EGE
Sbjct: 16  IADVASWYCALVLVTLILQSSLRETSIYD-PYE----VFKGNQILDR-PCDEIYVVQEGE 69

Query: 77  TLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKLLR 122
           TLHTIS KCGDPFIVE+NPHIHDPDDVFPGLVIK I+PSTP K+LR
Sbjct: 70  TLHTISSKCGDPFIVEKNPHIHDPDDVFPGLVIK-ITPSTPIKMLR 114

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506314|ref|XP_003521930.1| PREDICTED: uncharacterized protein LOC100813243 [Glycine max]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/120 (60%), Positives = 87/120 (72%), Gaps = 8/120 (6%)

Query: 1   MAPSSPTRGAA-SSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQ 59
           MA + P +G   +SS  +ADAASWYCA V++AL+L+   +G+S+   P          NQ
Sbjct: 2   MASNYPRKGLTLTSSKAIADAASWYCAFVLVALVLLSMFKGSSIMMLPS------HANNQ 55

Query: 60  LLNRRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRK 119
           LL+R PC+EIYVVGEGETLHTISDKCGDPFIVE NPHIHDPDDVFPGLVI++     PR 
Sbjct: 56  LLSR-PCEEIYVVGEGETLHTISDKCGDPFIVENNPHIHDPDDVFPGLVIEVTPLLLPRN 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469318|ref|XP_002270367.1| PREDICTED: uncharacterized protein LOC100255607 [Vitis vinifera]

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 88/112 (78%), Gaps = 7/112 (6%)

Query: 11  ASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCDEIY 70
           + SS  +ADAAS YCA++++ALIL+ S+R  S    P D       G+QLL R PCDEIY
Sbjct: 9   SRSSVAVADAASCYCAVILVALILLASVREYS--SLPTDES---VKGHQLLAR-PCDEIY 62

Query: 71  VVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKLLR 122
           VVGEGETLHTISDKCGDP+IVE+NPHIHDPDDVFPGLVIK I+PS  RKLLR
Sbjct: 63  VVGEGETLHTISDKCGDPYIVEQNPHIHDPDDVFPGLVIK-ITPSKQRKLLR 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721055|ref|NP_001235917.1| uncharacterized protein LOC100500035 precursor [Glycine max] gi|255628651|gb|ACU14670.1| unknown [Glycine max]

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 81/97 (83%), Gaps = 6/97 (6%)

Query: 15  ATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCDEIYVVGE 74
           ++ AD+ASWYCA+V+LA IL+GSIR +++A+E          GN LL +RPCDEIYVVGE
Sbjct: 5   SSAADSASWYCAMVLLATILLGSIRESTVAEEGEPIK-----GNNLL-QRPCDEIYVVGE 58

Query: 75  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 111
           GETLHTISDKC DPFIVERNPHIHDPDDVFPGLVIKI
Sbjct: 59  GETLHTISDKCNDPFIVERNPHIHDPDDVFPGLVIKI 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767756|emb|CAN62985.1| hypothetical protein VITISV_027722 [Vitis vinifera]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 87/112 (77%), Gaps = 7/112 (6%)

Query: 11  ASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCDEIY 70
           + SS  +ADAAS YCA++++ALIL+ S+R  S    P D       G QLL R PCDEIY
Sbjct: 9   SRSSVAVADAASCYCAVILVALILLXSVREYS--SLPTDES---VKGXQLLAR-PCDEIY 62

Query: 71  VVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKLLR 122
           VVGEGETLHTISDKCGDP+IVE+NPHIHDPDDVFPGLVIK I+PS  RKLLR
Sbjct: 63  VVGEGETLHTISDKCGDPYIVEQNPHIHDPDDVFPGLVIK-ITPSKQRKLLR 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722484|ref|NP_001235454.1| uncharacterized protein LOC100500258 precursor [Glycine max] gi|255629859|gb|ACU15280.1| unknown [Glycine max]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/98 (70%), Positives = 82/98 (83%), Gaps = 5/98 (5%)

Query: 15  ATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCDEIYVVGE 74
           ++ AD+ASWYCA+V+LA+IL+GSIR +++A+E  +       GN L  +RPCDEIYVVGE
Sbjct: 3   SSAADSASWYCAMVLLAMILLGSIRESTMAEEEGE----PIKGNNL-RQRPCDEIYVVGE 57

Query: 75  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII 112
           GETLHTISD C DPFIVERNPHIHDPDDVFPGLVIKII
Sbjct: 58  GETLHTISDMCNDPFIVERNPHIHDPDDVFPGLVIKII 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2174093	102	AT5G62150 "AT5G62150" [Arabido	0.729	0.872	0.602	1.8e-25
TAIR|locus:504955292	110	AT4G25433 "AT4G25433" [Arabido	0.704	0.781	0.576	3.3e-24
TAIR|locus:2083293	109	AT3G52790 "AT3G52790" [Arabido	0.729	0.816	0.510	1.5e-19

TAIR|locus:2174093 AT5G62150 "AT5G62150" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 59/98 (60%), Positives = 74/98 (75%)

Query:    23 WYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCDEIYVVGEGETLHTIS 82
             W  A+V+L+LIL+ S+R N+ ++        +R G+Q  + +PC+EIY+VGEGETLHTI 
Sbjct:    14 WCSAVVLLSLILLLSVRENNASNS-------IR-GSQF-STKPCEEIYIVGEGETLHTIG 64

Query:    83 DKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKL 120
             DKCGDPFIVERNPHIHDPDDVFPGLV+KI      RKL
Sbjct:    65 DKCGDPFIVERNPHIHDPDDVFPGLVLKIAPFYFNRKL 102

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0016998 "cell wall macromolecule catabolic process" evidence=ISS

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:504955292 AT4G25433 "AT4G25433" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 53/92 (57%), Positives = 68/92 (73%)

Query:    24 YCAIVILALILIGSIRGNSLADEPHDYD----HVMRPGNQLLNRRPCDEIYVVGEGETLH 79
             YC + +L L L GS++ ++       Y      V R G Q++ R PC+E+YVVGEG+TLH
Sbjct:    15 YCLVALLILTLAGSVKNSNGGGSGEYYRGRNCEVWR-GKQMMER-PCEELYVVGEGDTLH 72

Query:    80 TISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 111
             +IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Sbjct:    73 SISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA;ISS

TAIR|locus:2083293 AT3G52790 "AT3G52790" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 50/98 (51%), Positives = 66/98 (67%)

Query:    23 WYCAIVILALILIGSIRGNSLADEPH-DYDHVMRPGNQLL---NRRP-CDEIYVVGEGET 77
             WYCA+    ++L+ S +   +A E   +     +P   +    +RRP CDEIY V EGET
Sbjct:    15 WYCAVFAAMMLLMNSFQ---VAQEGSTEIVEKQQPSMMITGYSHRRPACDEIYEVKEGET 71

Query:    78 LHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPS 115
             L TIS+KCGDP+IVE NPHIHD DD+FPGL+I+I +PS
Sbjct:    72 LQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRI-TPS 108


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.144   0.457    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      122       109   0.00091  102 3  11 22  0.45    30
                                                     29  0.41    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  570 (61 KB)
  Total size of DFA:  128 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.76u 0.28s 12.04t   Elapsed:  00:00:00
  Total cpu time:  11.76u 0.28s 12.04t   Elapsed:  00:00:00
  Start:  Mon May 20 22:25:21 2013   End:  Mon May 20 22:25:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00140238 hypothetical protein (120 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
PRK11198	147	PRK11198, PRK11198, LysM domain/BON superfamily pr	2e-05
cd00118	45	cd00118, LysM, Lysine Motif is a small domain invo	2e-04

>gnl|CDD|236880 PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 65  PCDEIYVVGEGETLHTISDKC-GD----PFIVERN-PHIHDPDDVFPGLVIKI 111
           P  + Y V  G+TL  I+ K  G+      I E N P +  PD ++PG V++I
Sbjct: 93  PESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRI 145

Length = 147

>gnl|CDD|212030 cd00118, LysM, Lysine Motif is a small domain involved in binding peptidoglycan

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 69  IYVVGEGETLHTISDKCGDPF--IVERNPHIHDPDDVFPGLVIKI 111
            Y V  G+TL +I+ K G     +   NP + +PD ++PG  +KI
Sbjct: 2   TYTVKPGDTLWSIAKKYGVTVEELAAANP-LINPDCIYPGQKLKI 45

LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PRK10871	319	nlpD lipoprotein NlpD; Provisional	99.71
PF01476	44	LysM: LysM domain; InterPro: IPR018392 This domain	99.51
PRK14125	103	cell division suppressor protein YneA; Provisional	99.38
TIGR02899	44	spore_safA spore coat assembly protein SafA. in wh	99.35
PRK11198	147	LysM domain/BON superfamily protein; Provisional	99.18
cd00118	46	LysM Lysin domain, found in a variety of enzymes i	99.12
COG1652	269	XkdP Uncharacterized protein containing LysM domai	99.01
smart00257	44	LysM Lysin motif.	98.89
PRK13914	481	invasion associated secreted endopeptidase; Provis	98.8
TIGR02907	338	spore_VI_D stage VI sporulation protein D. SpoVID,	98.77
COG1388	124	LytE FOG: LysM repeat [Cell envelope biogenesis, o	98.71
PRK06347	592	autolysin; Reviewed	98.7
PRK10783	456	mltD membrane-bound lytic murein transglycosylase	98.7
PRK13914	481	invasion associated secreted endopeptidase; Provis	98.61
PRK06347	592	autolysin; Reviewed	98.55
PRK10783	456	mltD membrane-bound lytic murein transglycosylase	98.3
TIGR03505	74	FimV_core FimV N-terminal domain. This region is f	98.13
PF04225	85	OapA: Opacity-associated protein A LysM-like domai	98.08
PRK10260	306	L,D-transpeptidase; Provisional	97.97
PRK10190	310	L,D-transpeptidase; Provisional	97.88
PF05489	60	Phage_tail_X: Phage Tail Protein X; InterPro: IPR0	97.52
COG3170	755	FimV Tfp pilus assembly protein FimV [Cell motilit	96.7
PRK11649	439	putative peptidase; Provisional	96.27
COG3858	423	Predicted glycosyl hydrolase [General function pre	96.12
COG4254	339	Uncharacterized protein conserved in bacteria [Fun	94.87
COG3858	423	Predicted glycosyl hydrolase [General function pre	92.91
COG0739	277	NlpD Membrane proteins related to metalloendopepti	90.78
COG4784	479	Putative Zn-dependent protease [General function p	90.21
COG3061	242	OapA Cell envelope opacity-associated protein A [C	88.02
COG5004	70	P2-like prophage tail protein X [General function	87.49
COG1388	124	LytE FOG: LysM repeat [Cell envelope biogenesis, o	81.06

>PRK10871 nlpD lipoprotein NlpD; Provisional

Probab=99.71  E-value=5.1e-17  Score=135.76  Aligned_cols=47  Identities=21%  Similarity=0.279  Sum_probs=43.2

Q ss_pred             CCccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEEe
Q 033289           66 CDEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKII  112 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri~  112 (122)
                      .++.|+||+|||||+||++||. ...|+++|+|.||+.|||||+|+|.
T Consensus        59 ~~~~y~Vk~GDTL~~IA~~~g~~~~~La~~N~l~~p~~I~~GQ~L~i~  106 (319)
T PRK10871         59 SGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYSLNVGQTLQVG  106 (319)
T ss_pred             CCCceEECCCCHHHHHHHHHCcCHHHHHHhcCCCCCccccCCCEEEeC
Confidence            4678999999999999999995 5699999999999999999999993

>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []

Probab=99.51  E-value=1.5e-14  Score=86.31  Aligned_cols=41  Identities=34%  Similarity=0.588  Sum_probs=33.9

Q ss_pred             EEeccCChHHHHHHHhCCh--hhhhhCCCCCCCCCcCCCcEEEE
Q 033289           70 YVVGEGETLHTISDKCGDP--FIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        70 Y~Vk~GDTL~~IA~~~g~~--~il~~n~~I~~P~~I~PGqviri  111 (122)
                      |+||+|||||+||.+||..  .+.+.||++.+++ |+|||+|.|
T Consensus         1 y~V~~gDtl~~IA~~~~~~~~~l~~~N~~~~~~~-l~~G~~l~i   43 (44)
T PF01476_consen    1 YTVQPGDTLWSIAKRYGISVDELMELNPNIDSDN-LQPGQKLCI   43 (44)
T ss_dssp             EEE-TT--HHHHHHHTTS-HHHHHHHCCTTHGGC-GGTTEEEEE
T ss_pred             CEECcCCcHHHHHhhhhhhHhHHHHhcCCCCccc-CCCCCEEEe
Confidence            9999999999999999954  3888888998888 999999998

This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.

>PRK14125 cell division suppressor protein YneA; Provisional

Probab=99.38  E-value=4.9e-12  Score=90.67  Aligned_cols=48  Identities=21%  Similarity=0.165  Sum_probs=38.7

Q ss_pred             CCccEEeccCChHHHHHHHhCCh---------hhhhhCCCCCCCCCcCCCcEEEEeCCC
Q 033289           66 CDEIYVVGEGETLHTISDKCGDP---------FIVERNPHIHDPDDVFPGLVIKIISPS  115 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~g~~---------~il~~n~~I~~P~~I~PGqviri~~~~  115 (122)
                      ....|+|++|||||+||++|+..         ..+.++|+|+++ .|+|||+|+| |..
T Consensus        35 ~~~~~tV~~GDTLW~IA~~y~~~~~l~~~~~v~~I~~~N~l~~~-~I~~Gq~L~I-P~~   91 (103)
T PRK14125         35 QYVEITVQEGDTLWALADQYAGKHHMAKNEFIEWVEDVNNLPSG-HIKAGDKLVI-PVL   91 (103)
T ss_pred             CcEEEEECCCCCHHHHHHHhCCCcCCCHHHHHHHHHHhcCCCCC-cCCCCCEEEE-ecC
Confidence            35679999999999999999631         256778899776 6999999999 543

>TIGR02899 spore_safA spore coat assembly protein SafA

Probab=99.35  E-value=1e-12  Score=76.63  Aligned_cols=40  Identities=38%  Similarity=0.758  Sum_probs=35.3

Q ss_pred             eccCChHHHHHHHhCCh--hhhhhCCCCCCCCCcCCCcEEEE
Q 033289           72 VGEGETLHTISDKCGDP--FIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        72 Vk~GDTL~~IA~~~g~~--~il~~n~~I~~P~~I~PGqviri  111 (122)
                      |++|||||+||++||..  .+.+.|+.+.+|+.|+|||+|.|
T Consensus         1 v~~gdtl~~IA~~~~~~~~~l~~~N~~~~~~~~~~~g~~l~i   42 (44)
T TIGR02899         1 VQKGDTLWKIAKKYGVDFDELIQANPQLSNPNLIYPGMKIKI   42 (44)
T ss_pred             CCCCCCHHHHHHHHCcCHHHHHHHhhcCCCCCCcCCCCEEec
Confidence            78999999999999843  37777778899999999999998

in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.

>PRK11198 LysM domain/BON superfamily protein; Provisional

Probab=99.18  E-value=2.7e-11  Score=90.58  Aligned_cols=48  Identities=35%  Similarity=0.699  Sum_probs=40.4

Q ss_pred             CCccEEeccCChHHHHHHHh-CCh----hhhhhCC-CCCCCCCcCCCcEEEEeCC
Q 033289           66 CDEIYVVGEGETLHTISDKC-GDP----FIVERNP-HIHDPDDVFPGLVIKIISP  114 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~-g~~----~il~~n~-~I~~P~~I~PGqviri~~~  114 (122)
                      ....|+||+|||||+||.+| |+.    .|++.|+ .|.+|+.|+|||+|+| ||
T Consensus        94 ~~~~y~Vk~GDTL~~IA~~~~g~~~~~~~I~~~N~~~l~~~~~I~pGq~L~I-P~  147 (147)
T PRK11198         94 ESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRI-PE  147 (147)
T ss_pred             CCeEEEECCCCCHHHHHHHHcCChhhHHHHHHhhhhcCCCcCCcCcCCEEec-CC
Confidence            45679999999999999998 552    3777775 5899999999999999 54

>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation

Probab=99.12  E-value=1.2e-10  Score=65.50  Aligned_cols=43  Identities=30%  Similarity=0.461  Sum_probs=35.7

Q ss_pred             cEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289           69 IYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        69 ~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri  111 (122)
                      .|+|++|||+|+||.+||. ...+.+.|.+.++..|.|||.|.|
T Consensus         2 ~~~v~~gdt~~~ia~~~~~~~~~~~~~N~~~~~~~~~~g~~l~i   45 (46)
T cd00118           2 TYTVKKGDTLSSIAQRYGISVEELLKLNGLSDPDNLQVGQKLKI   45 (46)
T ss_pred             EEEECCCCCHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEec
Confidence            5999999999999999985 444455555578899999999988

This domain may have a general peptidoglycan binding function.

>COG1652 XkdP Uncharacterized protein containing LysM domain [Function unknown]

Probab=99.01  E-value=1.4e-10  Score=92.65  Aligned_cols=45  Identities=40%  Similarity=0.619  Sum_probs=40.5

Q ss_pred             cEEeccCChHHHHHHHh-CCh----hhhhhCC--CCCCCCCcCCCcEEEEeCC
Q 033289           69 IYVVGEGETLHTISDKC-GDP----FIVERNP--HIHDPDDVFPGLVIKIISP  114 (122)
Q Consensus        69 ~Y~Vk~GDTL~~IA~~~-g~~----~il~~n~--~I~~P~~I~PGqviri~~~  114 (122)
                      .|+|++|||||.||.++ |+.    .|+++|.  .|+|||+|+|||+|+| |.
T Consensus       212 ~~~v~rgDTl~~is~~~Yg~~~~y~~I~~aNk~~~~~~p~~I~pGq~l~i-P~  263 (269)
T COG1652         212 TNTVKRGDTLWQISKKVYGDGVEYRKIAEANKALVLDNPDKIKPGQVLRI-PD  263 (269)
T ss_pred             EEEeccCCcccccchhhcCcceEEEeHhhhhhhhccCCCCcCCCcceeeC-CC
Confidence            79999999999999995 764    2999998  6999999999999999 54

>smart00257 LysM Lysin motif

Probab=98.89  E-value=3.5e-09  Score=58.70  Aligned_cols=42  Identities=38%  Similarity=0.587  Sum_probs=34.0

Q ss_pred             cEEeccCChHHHHHHHhCC-hh-hhhhCCCCCCCCCcCCCcEEEE
Q 033289           69 IYVVGEGETLHTISDKCGD-PF-IVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        69 ~Y~Vk~GDTL~~IA~~~g~-~~-il~~n~~I~~P~~I~PGqviri  111 (122)
                      .|+|++|||+|+||.+||. .. +...|+ ..++..++||+.|+|
T Consensus         1 ~~~v~~gdt~~~ia~~~~~~~~~~~~~N~-~~~~~~~~~g~~l~i   44 (44)
T smart00257        1 TYTVKKGDTLSSIARRYGISVSDLLELNN-ILDPDNLQVGQKLKI   44 (44)
T ss_pred             CeEeCCCCCHHHHHHHhCCCHHHHHHHcC-CCCccccCCCCEEeC
Confidence            4899999999999999984 44 555555 567789999999875

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=98.80  E-value=6.4e-09  Score=91.42  Aligned_cols=43  Identities=23%  Similarity=0.464  Sum_probs=36.7

Q ss_pred             ccEEeccCChHHHHHHHhCCh-hhhhhCCCCCCCCCcCCCcEEEE
Q 033289           68 EIYVVGEGETLHTISDKCGDP-FIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        68 ~~Y~Vk~GDTL~~IA~~~g~~-~il~~n~~I~~P~~I~PGqviri  111 (122)
                      ..|+||+|||||+||++||.. ..|.+.|+| +++.|+|||+|+|
T Consensus        28 ~tytVq~GDTLw~IA~~ygvtv~~I~~~N~l-~~~~I~~Gq~L~I   71 (481)
T PRK13914         28 STVVVEAGDTLWGIAQSKGTTVDAIKKANNL-TTDKIVPGQKLQV   71 (481)
T ss_pred             ceEEECCCCCHHHHHHHHCCCHHHHHHHhCC-CcccccCCCEEEe
Confidence            459999999999999999954 466666678 5789999999999

>TIGR02907 spore_VI_D stage VI sporulation protein D

Probab=98.77  E-value=7.7e-09  Score=87.62  Aligned_cols=45  Identities=22%  Similarity=0.296  Sum_probs=39.1

Q ss_pred             CCccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289           66 CDEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri  111 (122)
                      ....|+||+|||||+||+|||. ...+.++|++. ++.|++||+|.|
T Consensus       292 ~~~~YiVq~GDTL~sIAkRYGVSV~~L~r~N~L~-~~~L~~GQ~L~I  337 (338)
T TIGR02907       292 KLRMCIVQEGDTIETIAERYEISVSQLIRHNQLE-DFEVNEGQILYI  337 (338)
T ss_pred             ccEEEEECCCCCHHHHHHHHCcCHHHHHHHhCCC-ccccCCCCEEEe
Confidence            4567999999999999999995 45677777886 899999999998

SpoVID, the stage VI sporulation protein D, is restricted to endospore-forming members of the bacteria, all of which are found among the Firmicutes. It is widely distributed but not quite universal in this group. Between well-conserved N-terminal and C-terminal domains is a poorly conserved, low-complexity region of variable length, rich enough in glutamic acid to cause spurious BLAST search results unless a filter is used. The seed alignment for this model was trimmed, in effect, by choosing member sequences in which these regions are relatively short. SpoVID is involved in spore coat assembly by the mother cell compartment late in the process of sporulation.

>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane]

Probab=98.71  E-value=1.5e-08  Score=71.72  Aligned_cols=44  Identities=23%  Similarity=0.327  Sum_probs=37.8

Q ss_pred             ccEEeccCChHHHHHHHhCCh-hhhhhCCCCCCCCCcCCCcEEEEe
Q 033289           68 EIYVVGEGETLHTISDKCGDP-FIVERNPHIHDPDDVFPGLVIKII  112 (122)
Q Consensus        68 ~~Y~Vk~GDTL~~IA~~~g~~-~il~~n~~I~~P~~I~PGqviri~  112 (122)
                      ..|+|++||||+.||.+||.+ -.|.++|++.++ .|++||+|++.
T Consensus        67 ~~~~V~~gdtL~~Ia~~~~~tv~~l~~~n~l~~~-~i~~gq~l~~~  111 (124)
T COG1388          67 VTYTVKKGDTLSKIARKYGVTVAELKQLNNLSSD-KIKVGQKLKLP  111 (124)
T ss_pred             ceEEEecCCCHHHHHHHhCCCHHHHHHHhccCCC-ceecCcEEEEe
Confidence            579999999999999999954 577777777666 99999999993

>PRK06347 autolysin; Reviewed

Probab=98.70  E-value=1.3e-08  Score=91.17  Aligned_cols=45  Identities=18%  Similarity=0.247  Sum_probs=39.2

Q ss_pred             CCccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289           66 CDEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri  111 (122)
                      +...|+||+|||||+||++||. ...|.+||+|. ++.|+|||+|.|
T Consensus       546 ~~~~Y~Vk~GDTL~sIA~KygvSv~~L~~~N~L~-~~~L~~GQ~L~I  591 (592)
T PRK06347        546 TVKTYTVKKGDSLWAISRQYKTTVDNIKAWNKLT-SNMIHVGQKLTI  591 (592)
T ss_pred             cceeeecCCCCcHHHHHHHhCCCHHHHHHhcCCC-cccCCCCCEEec
Confidence            3567999999999999999995 45778888886 688999999987

>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional

Probab=98.70  E-value=1.8e-08  Score=87.35  Aligned_cols=47  Identities=21%  Similarity=0.232  Sum_probs=38.6

Q ss_pred             CCccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEEeC
Q 033289           66 CDEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKIIS  113 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri~~  113 (122)
                      +...|+||+|||||+||.+||. ...|.++|++.++ .|+|||+|+|.-
T Consensus       401 ~~~~Y~Vr~GDTL~sIA~kygVtv~~L~~~N~l~~~-~L~pGq~L~l~v  448 (456)
T PRK10783        401 DSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTAK-NLQPGDKLTLFV  448 (456)
T ss_pred             cceeEEeCCCCCHHHHHHHhCCCHHHHHHhcCCCCC-cCCCCCEEEEec
Confidence            4567999999999999999995 4566677666555 999999999943

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=98.61  E-value=6e-08  Score=85.37  Aligned_cols=48  Identities=17%  Similarity=0.236  Sum_probs=40.4

Q ss_pred             CCccEEeccCChHHHHHHHhCCh-hhhhhCCCCCCCCCcCCCcEEEEeCCC
Q 033289           66 CDEIYVVGEGETLHTISDKCGDP-FIVERNPHIHDPDDVFPGLVIKIISPS  115 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~g~~-~il~~n~~I~~P~~I~PGqviri~~~~  115 (122)
                      ....|+||+|||||+||++||.+ ..+.++|+|.+ +.|+|||+|+| |.+
T Consensus       198 ~a~tytVq~GDTL~sIAkrYgVtv~eI~~~N~l~s-~~L~pGQ~L~I-p~s  246 (481)
T PRK13914        198 NATTHAVKSGDTIWALSVKYGVSVQDIMSWNNLSS-SSIYVGQKLAI-KQT  246 (481)
T ss_pred             CCeEEEECCCCCHHHHHHHHCCCHHHHHHhcCCCc-cccCCCCEEEe-cCC
Confidence            45789999999999999999954 57777788865 57999999999 544

>PRK06347 autolysin; Reviewed

Probab=98.55  E-value=8.4e-08  Score=85.99  Aligned_cols=45  Identities=20%  Similarity=0.410  Sum_probs=38.7

Q ss_pred             CCccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289           66 CDEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri  111 (122)
                      +...|+|++|||||+||.+||. ...|.++|+|. .+.|+|||+|.|
T Consensus       478 ~~~~YtVk~GDTL~sIAkkygVSv~~L~~~N~l~-s~~L~~GQ~L~I  523 (592)
T PRK06347        478 NAKVYTVAKGDSLWRIANNNKVTIANLKSWNNLK-SDFIYPGQKLKV  523 (592)
T ss_pred             cceeeeecCCCCHHHHHHHHCCCHHHHHHhcCCC-cccccCCcEEEE
Confidence            4567999999999999999995 45777777786 468999999999

>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional

Probab=98.30  E-value=1.1e-06  Score=76.37  Aligned_cols=46  Identities=17%  Similarity=0.226  Sum_probs=38.4

Q ss_pred             CccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEEeC
Q 033289           67 DEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKIIS  113 (122)
Q Consensus        67 ~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri~~  113 (122)
                      ...|+|++|||||+||.+||. ...+.++|.+.+ +.|.+||+|.|..
T Consensus       343 ~~~y~Vk~GDTL~sIA~r~gvs~~~L~~~N~l~~-~~L~~Gq~L~Ip~  389 (456)
T PRK10783        343 SRSYKVRSGDTLSGIASRLNVSTKDLQQWNNLRG-SKLKVGQTLTIGA  389 (456)
T ss_pred             ceEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCc-ccCCCCCEEEecC
Confidence            457999999999999999995 456677777766 8999999999943

>TIGR03505 FimV_core FimV N-terminal domain

Probab=98.13  E-value=1.6e-06  Score=59.05  Aligned_cols=38  Identities=21%  Similarity=0.389  Sum_probs=31.9

Q ss_pred             ChHHHHHHHhC-Ch---------hhhhhCCCC---CCCCCcCCCcEEEEeCC
Q 033289           76 ETLHTISDKCG-DP---------FIVERNPHI---HDPDDVFPGLVIKIISP  114 (122)
Q Consensus        76 DTL~~IA~~~g-~~---------~il~~n~~I---~~P~~I~PGqviri~~~  114 (122)
                      ||||+||.++. +.         .|+++||+.   .|++.|++|++|+| |.
T Consensus         1 DTLw~IA~~~~~~~~~s~~q~m~ai~~aNp~AF~~~nin~L~~G~~L~i-P~   51 (74)
T TIGR03505         1 DTLWGIAQRVRPDNSVSLYQMMLALYRANPDAFIGGNINRLKVGQILRI-PS   51 (74)
T ss_pred             CcHHHHHHHHccCCCCCHHHHHHHHHHHCHHhHhcCChhhcCCCCEEeC-CC
Confidence            89999999992 21         388999976   58999999999999 54

This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.

>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein

Probab=98.08  E-value=2.9e-06  Score=58.71  Aligned_cols=51  Identities=22%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             ccEEeccCChHHHHHHHhCCh-----hhhhhCCCCCCCCCcCCCcEEEEeCCCCCC
Q 033289           68 EIYVVGEGETLHTISDKCGDP-----FIVERNPHIHDPDDVFPGLVIKIISPSTPR  118 (122)
Q Consensus        68 ~~Y~Vk~GDTL~~IA~~~g~~-----~il~~n~~I~~P~~I~PGqviri~~~~~~~  118 (122)
                      ..|+|++||||..|=.++|-+     .++++...-+.=..|+|||.|.+.-..+|+
T Consensus         3 ~~~~V~~GDtLs~iF~~~gls~~dl~~v~~~~~~~k~L~~L~pGq~l~f~~d~~g~   58 (85)
T PF04225_consen    3 QEYTVKSGDTLSTIFRRAGLSASDLYAVLEADGEAKPLTRLKPGQTLEFQLDEDGQ   58 (85)
T ss_dssp             -EEE--TT--HHHHHHHTT--HHHHHHHHHHGGGT--GGG--TT-EEEEEE-TTS-
T ss_pred             cEEEECCCCcHHHHHHHcCCCHHHHHHHHhccCccchHhhCCCCCEEEEEECCCCC
Confidence            469999999999999999953     377777555555889999999985544543

This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.

>PRK10260 L,D-transpeptidase; Provisional

Probab=97.97  E-value=2.2e-05  Score=65.99  Aligned_cols=44  Identities=25%  Similarity=0.348  Sum_probs=38.5

Q ss_pred             CccEEeccCCh--HHHHHHHhCC--hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289           67 DEIYVVGEGET--LHTISDKCGD--PFIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        67 ~~~Y~Vk~GDT--L~~IA~~~g~--~~il~~n~~I~~P~~I~PGqviri  111 (122)
                      ...|+|++|||  |-.||++|+.  ..+.++||.+ ||....+|++|.|
T Consensus        40 ~~~~~v~~~~~~~le~iA~~f~~g~~~l~~aNPgv-dp~lp~~G~~i~i   87 (306)
T PRK10260         40 NQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGV-DTFLPKGGTVLNI   87 (306)
T ss_pred             cEEEEeCCCCCchHHHHHHHhCCCHHHHHHhCcCC-CCCcCCCCCEEEe
Confidence            56799999765  9999999974  4599999999 7999999999988

>PRK10190 L,D-transpeptidase; Provisional

Probab=97.88  E-value=4.8e-05  Score=64.07  Aligned_cols=44  Identities=23%  Similarity=0.234  Sum_probs=38.6

Q ss_pred             CccEEeccCC--hHHHHHHHhCC--hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289           67 DEIYVVGEGE--TLHTISDKCGD--PFIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        67 ~~~Y~Vk~GD--TL~~IA~~~g~--~~il~~n~~I~~P~~I~PGqviri  111 (122)
                      ...|+|++||  +|-+||++|+.  ..+.++||.+ ||+...+|++|.|
T Consensus        37 ~~~~~v~~~~~~~le~iA~~f~~g~~~l~~aNPgv-d~~~p~~G~~i~i   84 (310)
T PRK10190         37 SLTVTVPDHNTQPLETFAAQYGQGLSNMLEANPGA-DVFLPKSGSQLTI   84 (310)
T ss_pred             eEEEEecCCCCccHHHHHHHhCCCHHHHHHhCCCC-CCCCCCCCCEEEe
Confidence            5679999977  59999999974  4599999999 7999999999998

>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX

Probab=97.52  E-value=0.00013  Score=47.81  Aligned_cols=43  Identities=30%  Similarity=0.495  Sum_probs=35.1

Q ss_pred             EEeccCChHHHHHHHh-CCh-----hhhhhCCCCCCC-CCcCCCcEEEEeCC
Q 033289           70 YVVGEGETLHTISDKC-GDP-----FIVERNPHIHDP-DDVFPGLVIKIISP  114 (122)
Q Consensus        70 Y~Vk~GDTL~~IA~~~-g~~-----~il~~n~~I~~P-~~I~PGqviri~~~  114 (122)
                      |+. .||||-.|++|+ |+.     .++++||++.+- ..+-.|.+|.| |-
T Consensus         4 ~t~-~GDtlD~I~~r~yG~~~~~~e~ll~aNp~La~~~~~lpaG~~I~l-P~   53 (60)
T PF05489_consen    4 YTT-QGDTLDLIAYRHYGREDGAVEALLEANPGLADTGPVLPAGTVIIL-PD   53 (60)
T ss_pred             EEe-CcCcHHHHHHHHhCcHHHHHHHHHHHChhhhhcCCcCCCCCEEEC-CC
Confidence            555 999999999996 853     389999999888 66667899988 54

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family is found in a family of phage tail proteins. Sequence analysis suggests that they are related to IPR002482 from INTERPRO which suggests a general peptidoglycan binding function.

>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.70  E-value=0.0011  Score=61.39  Aligned_cols=48  Identities=25%  Similarity=0.426  Sum_probs=39.5

Q ss_pred             CCccEEeccCChHHHHHHHh-C-Ch--------hhhhhCCCC---CCCCCcCCCcEEEEeCC
Q 033289           66 CDEIYVVGEGETLHTISDKC-G-DP--------FIVERNPHI---HDPDDVFPGLVIKIISP  114 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~-g-~~--------~il~~n~~I---~~P~~I~PGqviri~~~  114 (122)
                      ++..|+|++|||||+||.+. + +-        -+.+.||+-   .|=|.+.+|++|+| |.
T Consensus       187 ~g~tyt~~~~Dtl~dIAs~~rp~~~vt~~Q~~lAly~lNP~af~~gni~RLr~GSvLri-P~  247 (755)
T COG3170         187 PGDTYTVRSGDTLWDIASRLRPQDHVTVEQMLLALYQLNPQAFVNGNINRLRAGSVLRI-PS  247 (755)
T ss_pred             CCcccccCCcchHHHHHHhhcCcccccHHHHHHHHHhhChhhhcccchhhccccceeec-cc
Confidence            56789999999999999997 5 21        278899865   46689999999999 54

>PRK11649 putative peptidase; Provisional

Probab=96.27  E-value=0.0052  Score=53.54  Aligned_cols=47  Identities=19%  Similarity=0.292  Sum_probs=35.3

Q ss_pred             ccEEeccCChHHHHHHHhCCh-h----hhhhCCCCCCCCCcCCCcEEEEeCCCCC
Q 033289           68 EIYVVGEGETLHTISDKCGDP-F----IVERNPHIHDPDDVFPGLVIKIISPSTP  117 (122)
Q Consensus        68 ~~Y~Vk~GDTL~~IA~~~g~~-~----il~~n~~I~~P~~I~PGqviri~~~~~~  117 (122)
                      ..|+|++||||.+|=.++|.+ .    +.+++   .+...|.|||.|++.-..+|
T Consensus        96 ~~~~Vk~GDTl~~iL~r~Gi~~~di~~l~~~~---~~L~~Lr~Gq~l~~~~d~dG  147 (439)
T PRK11649         96 HEYVVSTGDTLSSILNQYGIDMSDISQLAAQD---KELRNLKIGQQLSWTLTADG  147 (439)
T ss_pred             EEEEeCCCCCHHHHHHHcCCCHHHHHHHHHcC---hHhhcCCCCCEEEEEECCCC
Confidence            379999999999999999943 2    44433   45678999999999533333

>COG3858 Predicted glycosyl hydrolase [General function prediction only]

Probab=96.12  E-value=0.0061  Score=53.53  Aligned_cols=50  Identities=24%  Similarity=0.291  Sum_probs=40.5

Q ss_pred             CCccEEeccCChHHHHHHHhCCh-hhhhhCCCCCCCCCcCCCcEEEEeCCCC
Q 033289           66 CDEIYVVGEGETLHTISDKCGDP-FIVERNPHIHDPDDVFPGLVIKIISPST  116 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~g~~-~il~~n~~I~~P~~I~PGqviri~~~~~  116 (122)
                      ....|.|++||||++||.++|.+ .-++.-+.+..|..+.+|-.|.+ |+..
T Consensus        48 ~~~~y~~~~~d~~~Sia~~~~vt~~~~~~m~~~~~~~~l~~~~~l~~-P~~~   98 (423)
T COG3858          48 SGHFYDVGPGDTLTSIARTVGVTQDSAAIMNFVICPGYLQYGLNLYI-PSAR   98 (423)
T ss_pred             cceEEEecCCcchhhhhhhhcCCHHHHHhhcccccccceeeeeEEec-cCCC
Confidence            56889999999999999999954 44555555667999999999999 6543

>COG4254 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.87  E-value=0.026  Score=48.25  Aligned_cols=44  Identities=20%  Similarity=0.111  Sum_probs=39.0

Q ss_pred             ccEEeccCChHHHHHHHh-CC---hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289           68 EIYVVGEGETLHTISDKC-GD---PFIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        68 ~~Y~Vk~GDTL~~IA~~~-g~---~~il~~n~~I~~P~~I~PGqviri  111 (122)
                      -.|+|+.||||...+..| .+   .+.++.-|++.+|+.+.||-.|+|
T Consensus         6 ~~yrv~~gdtli~l~~~yl~~~~g~r~~q~an~~~~P~~l~pgs~l~i   53 (339)
T COG4254           6 LTYRVLFGDTLILLLGGYLTLLAGSRAAQPANTKRPPFILQPGSCLPI   53 (339)
T ss_pred             ceeeeccccHHHHHHHHhhhccchhhhhcccccCCCCcccCCCccccC
Confidence            359999999999999999 44   347778899999999999999999

>COG3858 Predicted glycosyl hydrolase [General function prediction only]

Probab=92.91  E-value=0.061  Score=47.39  Aligned_cols=43  Identities=26%  Similarity=0.342  Sum_probs=35.9

Q ss_pred             cEEeccCChHHHHHHHhCC--hhhhhhCCCCCCCCCcCCCcEEEEeCC
Q 033289           69 IYVVGEGETLHTISDKCGD--PFIVERNPHIHDPDDVFPGLVIKIISP  114 (122)
Q Consensus        69 ~Y~Vk~GDTL~~IA~~~g~--~~il~~n~~I~~P~~I~PGqviri~~~  114 (122)
                      .|.|++||+++.|+.+|+.  ..|+.. +.+.| |+|-+||.+.+ |+
T Consensus         3 i~~~~pg~~~~~i~~~~~~~~~~i~~~-~~~~~-d~~~~~q~~~v-~~   47 (423)
T COG3858           3 IHLVGPGDSRLIIAVYFPYTNNRIVNG-NDYTN-DDLVDGQTFVV-PP   47 (423)
T ss_pred             EEEccCCceeeeehhhccccccccccc-ccccc-ccccCceeEEE-CC
Confidence            5899999999999999983  457444 56777 99999999999 55

>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]

Probab=90.78  E-value=0.33  Score=37.54  Aligned_cols=44  Identities=23%  Similarity=0.363  Sum_probs=34.3

Q ss_pred             ccEEeccCChHHHHHHHhCCh-hhhhhCCCCCCCCCcCCCcEEEE
Q 033289           68 EIYVVGEGETLHTISDKCGDP-FIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        68 ~~Y~Vk~GDTL~~IA~~~g~~-~il~~n~~I~~P~~I~PGqviri  111 (122)
                      ..|+|++||||+.|+.+++.. ..+...+.+..+..+.+||++.+
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (277)
T COG0739           2 SLYVVKKGDTLSAIAARLGISAKDLARLNNLLKKRLLRIGQLLRV   46 (277)
T ss_pred             ceEEecCCCHHHHHHHHcCCCHHHHHHHHhhccccccCccceeee
Confidence            358999999999999999854 35555554544449999999998

>COG4784 Putative Zn-dependent protease [General function prediction only]

Probab=90.21  E-value=0.37  Score=42.54  Aligned_cols=45  Identities=22%  Similarity=0.340  Sum_probs=36.2

Q ss_pred             ccEEeccCChHHHHHHHh-CChh---hhhhCCCCCCCCCcCCCcEEEEe
Q 033289           68 EIYVVGEGETLHTISDKC-GDPF---IVERNPHIHDPDDVFPGLVIKII  112 (122)
Q Consensus        68 ~~Y~Vk~GDTL~~IA~~~-g~~~---il~~n~~I~~P~~I~PGqviri~  112 (122)
                      ..-+||+|||+-+.|-+- |..+   .+.--|.+..-..+.|||+++|.
T Consensus       429 rvvtVk~GqT~~~lAA~m~G~~rkldlfRllNam~~~a~~~pGd~vKii  477 (479)
T COG4784         429 RVVTVKPGQTMASLAARMMGTDRKLDLFRLLNAMSPGATVRPGDKVKII  477 (479)
T ss_pred             EEEEecCCccHHHHHhhccCchhHHHHHHHHhccCCCCcCCCCCeeeec
Confidence            347899999999999997 7443   45555777777999999999983

>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]

Probab=88.02  E-value=0.84  Score=37.67  Aligned_cols=53  Identities=21%  Similarity=0.233  Sum_probs=39.2

Q ss_pred             CCccEEeccCChHHHHHHHhCCh----hhhhhCCCCCCC-CCcCCCcEEEEeCCCCCC
Q 033289           66 CDEIYVVGEGETLHTISDKCGDP----FIVERNPHIHDP-DDVFPGLVIKIISPSTPR  118 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~g~~----~il~~n~~I~~P-~~I~PGqviri~~~~~~~  118 (122)
                      ....|+|++|+||...=+.+|-+    +-.++--.-.+| ..+.-||+|+|.--..|+
T Consensus       158 ~wqsy~V~~G~TLaQlFRdn~LpitDVnAMakveGagkpLSnlkaGq~Vki~~naqG~  215 (242)
T COG3061         158 NWQSYTVPQGKTLAQLFRDNNLPITDVNAMAKVEGAGKPLSNLKAGQKVKISLNAQGR  215 (242)
T ss_pred             cceeEEecCCccHHHHHhccCCChHHhHHHHhhccCCCchhhccCCCEEEEEEcCccc
Confidence            35679999999999998888743    344454566777 889999999994444444

>COG5004 P2-like prophage tail protein X [General function prediction only]

Probab=87.49  E-value=0.78  Score=31.38  Aligned_cols=43  Identities=30%  Similarity=0.541  Sum_probs=34.1

Q ss_pred             cEEeccCChHHHHHHHh-CC-----hhhhhhCCCCCCCCCcCC-CcEEEE
Q 033289           69 IYVVGEGETLHTISDKC-GD-----PFIVERNPHIHDPDDVFP-GLVIKI  111 (122)
Q Consensus        69 ~Y~Vk~GDTL~~IA~~~-g~-----~~il~~n~~I~~P~~I~P-Gqviri  111 (122)
                      .|.-..|||+=.+++|+ |-     ..++++||.|.|=.-++| |..|.+
T Consensus         4 ~~Rt~~gDtvDalc~~~Ygrt~~v~eavl~ANpGlAd~gp~lp~gl~i~l   53 (70)
T COG5004           4 IVRTRQGDTVDALCWRVYGRTTGVTEAVLEANPGLADWGPVLPHGLAITL   53 (70)
T ss_pred             EEEeccCchHHHHHHHHHhhHHHHHHHHHhcCCChhhcCCCCccceeEec
Confidence            47778999999999995 73     248999999998877776 555555

>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane]

Probab=81.06  E-value=0.81  Score=32.07  Aligned_cols=31  Identities=29%  Similarity=0.463  Sum_probs=24.4

Q ss_pred             HHHHhCC-hhhhhhCCCCCC-CCCcCCCcEEEE
Q 033289           81 ISDKCGD-PFIVERNPHIHD-PDDVFPGLVIKI  111 (122)
Q Consensus        81 IA~~~g~-~~il~~n~~I~~-P~~I~PGqviri  111 (122)
                      ||.+||. ...+.+.+.+.+ ++.|+|||+|.+
T Consensus         1 ia~~~~~~v~~l~~~n~~~~~s~~i~~gq~l~~   33 (124)
T COG1388           1 IASKYGVSVKALKKANALTGKSDAIKPGQVLKI   33 (124)
T ss_pred             CcccccccHHHHHHHhcccCCCCccccCceEEc
Confidence            5778874 446777777754 899999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
2l9y_A	167	CVNH-LYSM lectin; carbohydrate, sugar binding prot	99.57
1e0g_A	48	Membrane-bound lytic murein transglycosylase D; ce	99.47
2djp_A	77	Hypothetical protein SB145; LYSM, structural genom	99.41
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	99.16
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	98.91
4a1k_A	165	Putative L, D-transpeptidase YKUD; transferase, pe	98.66
2gu1_A	361	Zinc peptidase; alpha/beta, beta barrel, structura	98.44
2gu1_A	361	Zinc peptidase; alpha/beta, beta barrel, structura	97.42
3slu_A	371	M23 peptidase domain protein; outer membrane, hydr	97.4
2l9y_A	167	CVNH-LYSM lectin; carbohydrate, sugar binding prot	96.36

>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}

Probab=99.57  E-value=1e-15  Score=115.50  Aligned_cols=49  Identities=22%  Similarity=0.439  Sum_probs=41.8

Q ss_pred             CCccEEeccCChHHHHHHHhCCh-hhhhhCCCCCCCCCcCCCcEEEEeCCC
Q 033289           66 CDEIYVVGEGETLHTISDKCGDP-FIVERNPHIHDPDDVFPGLVIKIISPS  115 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~g~~-~il~~n~~I~~P~~I~PGqviri~~~~  115 (122)
                      ....|+||+|||||+||++||.. ..|.++|+|.||+.|||||+|+| |..
T Consensus        61 ~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~~~~~i~~Gq~L~i-p~~  110 (167)
T 2l9y_A           61 GTATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPGQVLQV-PTK  110 (167)
T ss_dssp             SCEEEEECTTCCHHHHHHHTTCCHHHHHHHHTCCGGGCCCTTEEEEE-SCC
T ss_pred             CCceEEECCCCcHHHHHHHcCCCHHHHHHHcCCCCcccccCCCEEEE-cCC
Confidence            45789999999999999999964 45566668999999999999999 543

>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1

Probab=99.47  E-value=3.3e-14  Score=84.73  Aligned_cols=43  Identities=23%  Similarity=0.404  Sum_probs=36.9

Q ss_pred             ccEEeccCChHHHHHHHhCCh-h-hhhhCCCCCCCCCcCCCcEEEEeCC
Q 033289           68 EIYVVGEGETLHTISDKCGDP-F-IVERNPHIHDPDDVFPGLVIKIISP  114 (122)
Q Consensus        68 ~~Y~Vk~GDTL~~IA~~~g~~-~-il~~n~~I~~P~~I~PGqviri~~~  114 (122)
                      ..|+|++|||||+||.+||.. . +.+.|+   +|+.|+|||+|+| |.
T Consensus         3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~---~~~~l~~G~~l~i-p~   47 (48)
T 1e0g_A            3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNS---DTANLQPGDKLTL-FV   47 (48)
T ss_dssp             CEEEECTTCCHHHHHHHHTCCHHHHHHHCS---CGGGCCTTEEEEC-CC
T ss_pred             EEEEEcCCCcHHHHHHHHCcCHHHHHHhCC---CCCcCCcCCEEEE-ec
Confidence            469999999999999999954 3 666676   8999999999999 53

>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=4.5e-14  Score=92.58  Aligned_cols=45  Identities=20%  Similarity=0.191  Sum_probs=39.0

Q ss_pred             CccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289           67 DEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        67 ~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri  111 (122)
                      ...|+||+|||||+||++||. ...+.+.|++.+|+.|+|||+|+|
T Consensus        15 ~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~i   60 (77)
T 2djp_A           15 RLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYI   60 (77)
T ss_dssp             EEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEE
T ss_pred             cEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEE
Confidence            346999999999999999995 445666668999999999999999

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*

Probab=99.16  E-value=2.5e-11  Score=94.34  Aligned_cols=44  Identities=25%  Similarity=0.351  Sum_probs=39.1

Q ss_pred             ccEEeccCChHHHHHHHhC-Ch--------h-hhhhCCCCCCCCCcCCCcEEEE
Q 033289           68 EIYVVGEGETLHTISDKCG-DP--------F-IVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        68 ~~Y~Vk~GDTL~~IA~~~g-~~--------~-il~~n~~I~~P~~I~PGqviri  111 (122)
                      ..|+||+|||||+||.+|| ..        . |.+.||+|.||+.|++||+|+|
T Consensus        10 ~~Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~I   63 (212)
T 4eby_A           10 ASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLV   63 (212)
T ss_dssp             EEEECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEE
T ss_pred             EEEEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEE
Confidence            4699999999999999998 43        4 6677779999999999999999

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*

Probab=98.91  E-value=6.1e-10  Score=86.48  Aligned_cols=42  Identities=14%  Similarity=0.276  Sum_probs=35.4

Q ss_pred             ccEEeccCChHHHHH-HHhC--Ch--hhhhhCCCCCCCCCcCCCcEEEE
Q 033289           68 EIYVVGEGETLHTIS-DKCG--DP--FIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        68 ~~Y~Vk~GDTL~~IA-~~~g--~~--~il~~n~~I~~P~~I~PGqviri  111 (122)
                      ..|+||+|||||+|| ++||  ..  .+.+.|+  .+|+.|+|||+|+|
T Consensus        79 ~~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~--~~~~~l~~Gq~L~I  125 (212)
T 4eby_A           79 FSYSVRQEDTYERVAISNYANLTTMESLQARNP--FPATNIPLSATLNV  125 (212)
T ss_dssp             EEEECCTTCCHHHHHHTTTTTSSCHHHHHHHCC--SCTTCCCTTCEEEE
T ss_pred             eEEEecCCCcHHHHHHHhcCCCCCHHHHHHhcC--CCcccCCCCCEEEE
Confidence            569999999999999 7898  54  3566666  47899999999999

>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*

Probab=98.66  E-value=1.2e-08  Score=76.07  Aligned_cols=42  Identities=26%  Similarity=0.433  Sum_probs=36.2

Q ss_pred             ccEEeccCChHHHHHHHhCCh--hhhhhCCCCCCCCCcCCCcEEEE
Q 033289           68 EIYVVGEGETLHTISDKCGDP--FIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        68 ~~Y~Vk~GDTL~~IA~~~g~~--~il~~n~~I~~P~~I~PGqviri  111 (122)
                      ..|+||+||||.+||++|+..  .+.++||.+ ||. +.+||.|.|
T Consensus         3 ~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~v-d~~-l~~g~~i~i   46 (165)
T 4a1k_A            3 LTYQVKQGDTLNSIAADFRISTAALLQANPSL-QAG-LTAGQSIVI   46 (165)
T ss_dssp             EEEECCTTCCHHHHHHHTTCCHHHHHHHCGGG-GGC-CCTTCEEEE
T ss_pred             EEEEECCCCCHHHHHHHhCCCHHHHHHhCccC-CCc-cCCCccccC
Confidence            469999999999999999843  489999987 565 689999998

>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}

Probab=98.44  E-value=5.4e-08  Score=79.87  Aligned_cols=47  Identities=23%  Similarity=0.290  Sum_probs=36.1

Q ss_pred             CCccEEeccCChHHHHHHHhCC-hhhhhhCCCC----CCCCCcCCCcEEEEe
Q 033289           66 CDEIYVVGEGETLHTISDKCGD-PFIVERNPHI----HDPDDVFPGLVIKII  112 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I----~~P~~I~PGqviri~  112 (122)
                      ....|+||+|||||+||++||. ...+.+.|++    .+++.|+|||.|+|.
T Consensus         6 ~~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~   57 (361)
T 2gu1_A            6 KRIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELM   57 (361)
T ss_dssp             -CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEE
T ss_pred             CceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEE
Confidence            3567999999999999999995 4444443333    358999999999994

>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}

Probab=97.42  E-value=4.9e-05  Score=62.27  Aligned_cols=45  Identities=9%  Similarity=0.092  Sum_probs=34.1

Q ss_pred             ccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCC-----CCcCCCcEEEEe
Q 033289           68 EIYVVGEGETLHTISDKCGD-PFIVERNPHIHDP-----DDVFPGLVIKII  112 (122)
Q Consensus        68 ~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P-----~~I~PGqviri~  112 (122)
                      ..|+|+.|||||+||.++|. +..+.++++|...     ..|+|||.++|.
T Consensus       101 ~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~  151 (361)
T 2gu1_A          101 ILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDIL  151 (361)
T ss_dssp             EEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEE
T ss_pred             EEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEE
Confidence            35899999999999999995 4555555555433     569999999983

>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}

Probab=97.40  E-value=0.00015  Score=60.46  Aligned_cols=49  Identities=14%  Similarity=0.105  Sum_probs=35.3

Q ss_pred             CCccEEeccCChHHHHHHHhCC-h----hhhhhCCCCCCCCCcCCCcEEEEeCC
Q 033289           66 CDEIYVVGEGETLHTISDKCGD-P----FIVERNPHIHDPDDVFPGLVIKIISP  114 (122)
Q Consensus        66 ~~~~Y~Vk~GDTL~~IA~~~g~-~----~il~~n~~I~~P~~I~PGqviri~~~  114 (122)
                      ....|+|++||||.+|-.++|. .    .++++.....+...|.|||.|++.-.
T Consensus        13 ~W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~   66 (371)
T 3slu_A           13 YWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVLVG   66 (371)
T ss_dssp             EEEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEEEC
T ss_pred             ceEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEEEC
Confidence            3567999999999999999994 2    25666677779999999999999443

>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}

Probab=96.36  E-value=4.7e-05  Score=57.01  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=30.5

Q ss_pred             CccEEeccCChHHHHHHHhCCh--hhhhhCCCCCCCC
Q 033289           67 DEIYVVGEGETLHTISDKCGDP--FIVERNPHIHDPD  101 (122)
Q Consensus        67 ~~~Y~Vk~GDTL~~IA~~~g~~--~il~~n~~I~~P~  101 (122)
                      ...|+|++||||++||.++|..  .++..|++|.|+|
T Consensus       125 ~~~~~v~~GdtL~aIA~r~G~~v~s~i~Ln~~I~N~n  161 (167)
T 2l9y_A          125 RDVRLVDGGKVLEAELRYSGGWNRSRIYLDEHIGNRN  161 (167)
T ss_dssp             EEEEEETTTTEEEEEEEETTEEEEEEECGGGTEEESS
T ss_pred             ceEEEeCCcCChHHHHHHcCCceEEEEEcccccCcCC
Confidence            3579999999999999999854  4888999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d1e0ga_	48	d.7.1.1 (A:) Membrane-bound lytic murein transclyc	0.001

>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Length = 48

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

 Score = 32.3 bits (74), Expect = 0.001
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 70  YVVGEGETLHTISDKCGDPF--IVERNPHIHDPDDVFPGLVIKI 111
           Y V +G++L +I+ + G     ++  N    D  ++ PG  + +
Sbjct: 5   YRVRKGDSLSSIAKRHGVNIKDVMRWN---SDTANLQPGDKLTL 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1y7ma2	48	Hypothetical protein YkuD, N-terminal domain {Baci	99.55
d1e0ga_	48	Membrane-bound lytic murein transclycosylase D, Ml	99.49

>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Hypothetical protein YkuD, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=1.2e-15  Score=93.14  Aligned_cols=43  Identities=21%  Similarity=0.247  Sum_probs=34.9

Q ss_pred             cEEeccCChHHHHHHHhCCh-hhhhhCCCCCCCCCcCCCcEEEEeC
Q 033289           69 IYVVGEGETLHTISDKCGDP-FIVERNPHIHDPDDVFPGLVIKIIS  113 (122)
Q Consensus        69 ~Y~Vk~GDTL~~IA~~~g~~-~il~~n~~I~~P~~I~PGqviri~~  113 (122)
                      .|+||+|||||+||++||.. ..+.++|++.+| .|+|||+|+| |
T Consensus         3 ~y~V~~GDTL~~IA~~y~v~~~~i~~~N~~~~~-~l~~Gq~L~I-P   46 (48)
T d1y7ma2           3 TYQVKQGDTLNSIAADFRISTAALLQANPSLQA-GLTAGQSIVI-P   46 (48)
T ss_dssp             EEECCTTCCHHHHHHHTTSCCCCCCCTSCTTCS-SCCTTCEEEE-T
T ss_pred             EEEECCCCCHHHHHHHhCCCHHHHHHHcCCCCC-CCCCCCEEEe-C
Confidence            59999999999999999954 444444457777 4999999999 5

>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=5.8e-15  Score=90.62  Aligned_cols=41  Identities=24%  Similarity=0.315  Sum_probs=34.1

Q ss_pred             cEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289           69 IYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKI  111 (122)
Q Consensus        69 ~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri  111 (122)
                      .|+||+|||||+||.+||. ...+.++|++.  +.|+|||+|+|
T Consensus         4 ~y~V~~GDTl~~IA~~y~vs~~~i~~~N~l~--~~l~~Gq~L~i   45 (48)
T d1e0ga_           4 TYRVRKGDSLSSIAKRHGVNIKDVMRWNSDT--ANLQPGDKLTL   45 (48)
T ss_dssp             EEEECTTCCHHHHHHHHTCCHHHHHHHCSCG--GGCCTTEEEEC
T ss_pred             EEEECCCCCHHHHHHHHCCCHHHHHHHcCCc--ccCcCCCEEEE
Confidence            5999999999999999995 44555555664  47999999999