Citrus Sinensis ID: 033308

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKAVTALMAALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKRI
Secondary Structure (PSIPRED)
ccccccHHHcccccHHHHcccccccccccccccccHHHHHHHccccccEEEEccHHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHccccHcHcccccccHHHccccccccccHHHEccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcHHHHHHHHHHHcHEEEEEEEEEEEEccccccccc
Coil and Loop (DISEMBL)
mtsssaismaiplthasqkmvvnseaffkplpvkpskVLAAASKSSGRFEVEASSLKEKAVTALMAALAASMVIpevaeaagpgvsssLTNFLLSIAAGGVVLAALIGAVIgvsnfdpikri
Flexible Loop (DISEMBL)
MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKAVTALMAALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAvigvsnfdpikri
Low Complexity Region (SEG)
MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKavtalmaalaasmvIPEVAEAAGPGVSSSLTNFllsiaaggvvlaaligavigvSNFDPIKRI
Disordered region (IsUnstruct)
**************************FF*******************************AVTALMAALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFD*****
Disordered Region (DISOPRED)
************************************************************VTALMAALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKR*
Disordered Region (DISEMBL)
********MAIPLTHASQKMVVNSEAFFKPLPVKPSKV******************KEKAVTALMAALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKRI
Disordered Region (DISPRO)
**************************FFKPLPVKPSKVL***SKSSGRFEVEASSLKEKAVTALMAALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDP****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKAVTALMAALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
224122446	122	predicted protein [Populus trichocarpa]	0.983	0.983	0.737	5e-41
118489056	122	unknown [Populus trichocarpa x Populus d	0.983	0.983	0.729	6e-40
118489179	122	unknown [Populus trichocarpa x Populus d	0.983	0.983	0.713	4e-39
255546007	121	conserved hypothetical protein [Ricinus	0.975	0.983	0.704	9e-37
118489268	121	unknown [Populus trichocarpa x Populus d	0.975	0.983	0.754	9e-35
224068412	121	predicted protein [Populus trichocarpa]	0.975	0.983	0.737	4e-34
224092099	124	predicted protein [Populus trichocarpa]	0.942	0.927	0.672	1e-32
343887314	123	hypothetical protein [Citrus unshiu]	0.950	0.943	0.655	2e-32
45356861	123	ultraviolet-B-repressible protein [Gossy	0.967	0.959	0.658	2e-31
62910995	116	ultraviolet-B-repressible protein [Gossy	0.918	0.965	0.637	2e-30

>gi|224122446|ref|XP_002330483.1| predicted protein [Populus trichocarpa] gi|222872417|gb|EEF09548.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 104/122 (85%), Gaps = 2/122 (1%)

Query: 1   MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKA 60
           M S+SA+SMA+PLTHAS+K    SEAFFKPLPV+PSK +AAAS+ +GRF+V+A SLKEK 
Sbjct: 1   MASTSAVSMAMPLTHASRKAAPTSEAFFKPLPVRPSKAIAAASRCNGRFQVKA-SLKEKV 59

Query: 61  VTALMA-ALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPI 119
           VT L A AL  SMVIPEVAEAAGPGVS SL NFLLSI AGGVVLAA+ GAV+GVSNFDP+
Sbjct: 60  VTGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLAAIAGAVVGVSNFDPV 119

Query: 120 KR 121
           +R
Sbjct: 120 RR 121

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489056|gb|ABK96335.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  167 bits (423), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 103/122 (84%), Gaps = 2/122 (1%)

Query: 1   MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKA 60
           M S+SA+SMA+PLTHAS+K    SEAFFKPLPV+PSK +AAAS+ +G F+V+A SLKEK 
Sbjct: 1   MASTSAVSMAMPLTHASRKAAPTSEAFFKPLPVRPSKAIAAASRCNGGFQVKA-SLKEKV 59

Query: 61  VTALMA-ALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPI 119
           VT L A AL  SMVIPEVAEAAGPGVS SL NFLLSI AGGVVLAA+ GAV+GVSNFDP+
Sbjct: 60  VTGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLAAIAGAVVGVSNFDPV 119

Query: 120 KR 121
           +R
Sbjct: 120 RR 121

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489179|gb|ABK96396.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/122 (71%), Positives = 101/122 (82%), Gaps = 2/122 (1%)

Query: 1   MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKA 60
           M S+SA+SMA+PLTHAS+K    SEAFFKPLP +PSK +AAAS+ + RF+V+AS LKEK 
Sbjct: 1   MASTSAVSMAMPLTHASRKAAPTSEAFFKPLPARPSKAIAAASRCNDRFQVKAS-LKEKV 59

Query: 61  VTALMA-ALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPI 119
           VT L A AL  SMVIPEVAEAAGPGVS SL NFLLSI AGGVVL A+ GAV+GVSNFDP+
Sbjct: 60  VTGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLVAIAGAVVGVSNFDPV 119

Query: 120 KR 121
           +R
Sbjct: 120 RR 121

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546007|ref|XP_002514063.1| conserved hypothetical protein [Ricinus communis] gi|223546519|gb|EEF48017.1| conserved hypothetical protein [Ricinus communis]

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 86/122 (70%), Positives = 104/122 (85%), Gaps = 3/122 (2%)

Query: 1   MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKA 60
           M S+SA+SMA+P+T ASQK V +SEAFFKPLP++ SK + A SKS+G+F+V+AS LKEKA
Sbjct: 1   MASTSAVSMAMPITSASQKKVPSSEAFFKPLPLRQSKAVMA-SKSNGKFQVKAS-LKEKA 58

Query: 61  VTALMAA-LAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPI 119
           +T L AA L ASMVIPEVAEAAG GVS SL NFLLSI AGGVVL A++GA+IGV+NFDP+
Sbjct: 59  ITGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDPV 118

Query: 120 KR 121
           KR
Sbjct: 119 KR 120

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489268|gb|ABK96439.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 92/122 (75%), Positives = 102/122 (83%), Gaps = 3/122 (2%)

Query: 1   MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKA 60
           M S+SA+SMA+PLT+ASQK V  SEAFFKPLP +PSK   +ASKSSGRF+V+AS LKEK 
Sbjct: 1   MASTSAVSMALPLTYASQKRVPASEAFFKPLPARPSKA-MSASKSSGRFQVKAS-LKEKL 58

Query: 61  VTALMA-ALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPI 119
           VT L A AL ASMVIPEVAEAAG G S SL NFLLSI AGGVVL A+IGAVIGVSNFDP+
Sbjct: 59  VTGLTAGALTASMVIPEVAEAAGAGTSPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPV 118

Query: 120 KR 121
           KR
Sbjct: 119 KR 120

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068412|ref|XP_002326114.1| predicted protein [Populus trichocarpa] gi|222833307|gb|EEE71784.1| predicted protein [Populus trichocarpa]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 102/122 (83%), Gaps = 3/122 (2%)

Query: 1   MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKA 60
           M S+SA+SMA+PLT+ASQK +  SEAFFKPLP +PSK   +ASKSSGRF+V+AS LKEK 
Sbjct: 1   MASTSAVSMALPLTYASQKRIPASEAFFKPLPARPSKA-MSASKSSGRFQVKAS-LKEKL 58

Query: 61  VTALMA-ALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPI 119
           VT L A AL ASMVIP+VAEAAG G S SL NFLLSI AGGVVL A+IGAVIGVSNFDP+
Sbjct: 59  VTGLTAGALTASMVIPDVAEAAGAGASPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPV 118

Query: 120 KR 121
           KR
Sbjct: 119 KR 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092099|ref|XP_002309472.1| predicted protein [Populus trichocarpa] gi|222855448|gb|EEE92995.1| predicted protein [Populus trichocarpa]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/122 (67%), Positives = 96/122 (78%), Gaps = 7/122 (5%)

Query: 6   AISMAIPLTHASQKMVV---NSEAFFKPLPVKPSKV--LAAASKSSGRFEVEASSLKEKA 60
           ++SMA+PL  ASQK +    NS++F KPLP++PS    L+  SKS  R EV+AS LKEKA
Sbjct: 3   SVSMAMPLASASQKRLEQPPNSQSFLKPLPIRPSMEVGLSTKSKSRARLEVQAS-LKEKA 61

Query: 61  VTALMAA-LAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPI 119
           VT L AA L ASMVIPEVAEAAGPG+S SL NFLLSIAAGGVV  A+IGAV+GVSNFDP+
Sbjct: 62  VTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGVVAVAIIGAVLGVSNFDPV 121

Query: 120 KR 121
           KR
Sbjct: 122 KR 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887314|dbj|BAK61860.1| hypothetical protein [Citrus unshiu]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 96/122 (78%), Gaps = 6/122 (4%)

Query: 5   SAISMAIPLTHASQKMVVN--SEAFFKPLPVKPSKV--LAAASKSSGRFEVEASSLKEKA 60
           +++SMA+PL+ A+Q  ++   SE+F KPLPV+PSK        KS  R +V+A SLKEKA
Sbjct: 2   ASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQA-SLKEKA 60

Query: 61  VTALM-AALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPI 119
           VT L  AAL ASMVIPEVAEAAGPG+S SL NFLLSI AGGVVLAAL+GAVIGV+NFDP+
Sbjct: 61  VTGLTAAALTASMVIPEVAEAAGPGLSPSLKNFLLSIVAGGVVLAALVGAVIGVANFDPV 120

Query: 120 KR 121
           KR
Sbjct: 121 KR 122

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45356861|gb|AAS58469.1| ultraviolet-B-repressible protein [Gossypium hirsutum]

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 96/123 (78%), Gaps = 5/123 (4%)

Query: 1   MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEA--SSLKE 58
           M S+SA+SMA+PLT A+Q  V  SEAFFKPLP KPS  +   + S+GR +V+A  SS K+
Sbjct: 1   MASTSAVSMALPLTRATQNRVPASEAFFKPLPRKPSGAIPTTT-SNGRLQVKAAASSPKD 59

Query: 59  KAVTALMAA-LAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFD 117
           KAVT L AA + ASMVIPEVA+AA  GVS SL NFLLSI AGGVVL A++GAVIGVSNFD
Sbjct: 60  KAVTGLTAAAITASMVIPEVAQAAD-GVSPSLKNFLLSIVAGGVVLVAIVGAVIGVSNFD 118

Query: 118 PIK 120
           P+K
Sbjct: 119 PVK 121

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62910995|gb|AAY21210.1| ultraviolet-B-repressible protein [Gossypium hirsutum]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/116 (63%), Positives = 90/116 (77%), Gaps = 4/116 (3%)

Query: 9   MAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEA--SSLKEKAVTALMA 66
           MA+PL   +Q  + +SEAFFKPLPVKP + + A  + +GR +V+A  SS KEKAVT L A
Sbjct: 1   MALPLAGTTQNRMPSSEAFFKPLPVKPWRSMGAVKRPNGRLQVKAASSSFKEKAVTGLTA 60

Query: 67  A-LAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKR 121
           A L  SM+IPEVA+AA  GV+ SL NFLLSIAAGGVVL A++GAVIGVSNFDP+KR
Sbjct: 61  AALTTSMMIPEVAQAAD-GVTPSLKNFLLSIAAGGVVLVAIVGAVIGVSNFDPVKR 115

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2054582	116	PSBX "AT2G06520" [Arabidopsis	0.942	0.991	0.355	6.2e-14

TAIR|locus:2054582 PSBX "AT2G06520" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 43/121 (35%), Positives = 55/121 (45%)

Query:     1 MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKX 60
             M S+SA+S+  PL          S  F KPLP+KPSK L A    + R +V+A  + +  
Sbjct:     1 MASTSAMSLVTPLNQT------RSSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKAL 54

Query:    61 XXXXXXXXXXXXXIPEVAEAAGPGVSSSLTNFXXXXXXXXXXXXXXXXXXXXXSNFDPIK 120
                          IPE+AEAAG G+S SL NF                     SNFDP+K
Sbjct:    55 TGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVK 114

Query:   121 R 121
             R
Sbjct:   115 R 115


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.121   0.316    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      122        87   0.00091  102 3  10 23  0.50    29
                                                     29  0.48    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  498 (53 KB)
  Total size of DFA:  97 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.84u 0.15s 11.99t   Elapsed:  00:00:00
  Total cpu time:  11.84u 0.15s 11.99t   Elapsed:  00:00:00
  Start:  Mon May 20 22:35:06 2013   End:  Mon May 20 22:35:06 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009523 "photosystem II" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_1450010 hypothetical protein (122 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
PLN00088	127	PLN00088, PLN00088, predicted protein; Provisional	2e-09
pfam06596	39	pfam06596, PsbX, Photosystem II reaction centre X	8e-04

>gnl|CDD|177709 PLN00088, PLN00088, predicted protein; Provisional

 Score = 51.2 bits (122), Expect = 2e-09
 Identities = 35/55 (63%), Positives = 42/55 (76%)

Query: 67  ALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKR 121
           AL A+ V+PE+AEAA PGVS SL N LLS+ AGGVV+  +  AV GVS FDP+KR
Sbjct: 72  ALLAAAVVPEIAEAAQPGVSPSLKNLLLSVVAGGVVITVIGVAVAGVSTFDPVKR 126

Length = 127

>gnl|CDD|148292 pfam06596, PsbX, Photosystem II reaction centre X protein (PsbX)

 Score = 34.6 bits (80), Expect = 8e-04
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 85  VSSSLTNFLLSIAAGG-VVLAALIGAVIGVSNFDPIKR 121
           ++ SL NFL S+ AG  +V+  +  A+I VS  D ++R
Sbjct: 1   MTPSLANFLWSLVAGAVIVVIPITAALIFVSQTDKVQR 38

This family consists of several photosystem II reaction centre X protein (PsbX) sequences from both prokaryotes and eukaryotes. Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PLN00088	127	predicted protein; Provisional	100.0
PF06596	39	PsbX: Photosystem II reaction centre X protein (Ps	99.79
CHL00114	39	psbX photosystem II protein X; Reviewed	99.78

>PLN00088 predicted protein; Provisional

Probab=100.00  E-value=2.7e-39  Score=242.62  Aligned_cols=119  Identities=36%  Similarity=0.503  Sum_probs=103.4

Q ss_pred             CCcccccc-ccccccc-ccccc---cccccccc-ccCCCCchhhhhhhcCCCCceEEeecchhHHHHHHHH-HHHHhhhc
Q 033308            1 MTSSSAIS-MAIPLTH-ASQKM---VVNSEAFF-KPLPVKPSKVLAAASKSSGRFEVEASSLKEKAVTALM-AALAASMV   73 (122)
Q Consensus         1 MAS~Sa~s-ma~pla~-as~~~---~pss~~ff-~Plp~rps~~~~~~~~~~~r~~v~As~~k~k~~~glt-aa~~Asm~   73 (122)
                      |||++..+ .+.++++ +++.|   .++.|+|- .+-+.||+++...+|  |+|+|++++.+|||+++|+| +|++|+|+
T Consensus         1 ma~~~~~s~~~a~~~~~~t~~~~~k~~~~~g~~l~~p~~~~~~~~~~~n--~~r~~~~as~~~ekav~gltaaAl~Asmv   78 (127)
T PLN00088          1 MACAAMASVSSAATAPLATLVWEAKLLSRQGLALAAPSGKKQVSVAISN--RSRVVMSLPAKEDHNVASLTSLALLAAAV   78 (127)
T ss_pred             CchHHHHHhhccccchhhHhhhhhhhhccccceecCCCCccchhhhhcc--cceeEEecchHHHHHHHHHHHHHHHHHhh
Confidence            77776555 4667777 77774   59999993 331378888887755  69999999669999999999 89999999


Q ss_pred             chHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHhhheeeecCCCccc
Q 033308           74 IPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKR  121 (122)
Q Consensus        74 ~P~vAeAa~~~mTPSL~NFL~SlvaGgvVv~~i~~ali~VSq~D~V~R  121 (122)
                      +||||||||+||||||+||||||+|||+|++.|+++||||||||||+|
T Consensus        79 ~pevAeAA~~gvTPSLsNFL~SLvaGgvVv~pI~~Ali~VSq~D~V~R  126 (127)
T PLN00088         79 VPEIAEAAQPGVSPSLKNLLLSVVAGGVVITVIGVAVAGVSTFDPVKR  126 (127)
T ss_pred             CHHHHHhccCCCChhHHHHHHHHHhhhhhhhhhheeeEEEeccCcccc
Confidence            999999999999999999999999999999999999999999999999

>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.79  E-value=4.5e-20  Score=115.59  Aligned_cols=37  Identities=51%  Similarity=0.829  Sum_probs=29.4

Q ss_pred             CChhHHHHHHHHHHHH-HHHHHHHhhheeeecCCCccc
Q 033308           85 VSSSLTNFLLSIAAGG-VVLAALIGAVIGVSNFDPIKR  121 (122)
Q Consensus        85 mTPSL~NFL~SlvaGg-vVv~~i~~ali~VSq~D~V~R  121 (122)
                      |||||+|||+||+||| +|++.|+++|++|||+|+|+|
T Consensus         1 mTpSL~nfl~Sl~aG~~iVv~~i~~ali~VSq~D~v~R   38 (39)
T PF06596_consen    1 MTPSLSNFLLSLVAGAVIVVIPIAGALIFVSQFDRVKR   38 (39)
T ss_dssp             --HHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCS----
T ss_pred             CCHhHHHHHHHHHhhhhhhhhhhhhheEEEeccCcccc
Confidence            8999999999999999 666679999999999999999

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.

>CHL00114 psbX photosystem II protein X; Reviewed

Probab=99.78  E-value=1.3e-19  Score=113.76  Aligned_cols=37  Identities=27%  Similarity=0.419  Sum_probs=35.7

Q ss_pred             CChhHHHHHHHHHHHHHHHH-HHHhhheeeecCCCccc
Q 033308           85 VSSSLTNFLLSIAAGGVVLA-ALIGAVIGVSNFDPIKR  121 (122)
Q Consensus        85 mTPSL~NFL~SlvaGgvVv~-~i~~ali~VSq~D~V~R  121 (122)
                      |||||+|||+||+||++|++ .|+++|+||||+|+++|
T Consensus         1 MTpSLsnF~~SL~~Ga~ivvipi~~aLifvSq~D~v~R   38 (39)
T CHL00114          1 MTPSLSAFINSLLLGAIIVVIPITLALLFVSQKDRTTR   38 (39)
T ss_pred             CChhHHHHHHHHHHHHHHhHHHhhhheEEEeccceecc
Confidence            89999999999999999988 59999999999999999

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
3arc_X	39	Photosystem II PSBX protein; PSII, membrane-protei	99.82
3bz1_X	50	Photosystem II PSBX protein; electron transport ph	99.81

>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*

Probab=99.82  E-value=2e-21  Score=120.87  Aligned_cols=38  Identities=29%  Similarity=0.612  Sum_probs=37.1

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHhhheeeecCCCccc
Q 033308           84 GVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKR  121 (122)
Q Consensus        84 ~mTPSL~NFL~SlvaGgvVv~~i~~ali~VSq~D~V~R  121 (122)
                      .|||||+|||+||+|||+|+++|++||++|||+|||+|
T Consensus         1 ~mTpSL~nFl~Sl~aG~vvvv~i~~ali~VSq~D~v~R   38 (39)
T 3arc_X            1 TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQR   38 (39)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             CcChhHHHHHHHHHHHHHHHHHHHHHheeEeccCcccc
Confidence            49999999999999999999999999999999999999

>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*

Probab=99.81  E-value=5.7e-21  Score=124.18  Aligned_cols=39  Identities=28%  Similarity=0.577  Sum_probs=36.5

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHhhheeeecCCCccc
Q 033308           83 PGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKR  121 (122)
Q Consensus        83 ~~mTPSL~NFL~SlvaGgvVv~~i~~ali~VSq~D~V~R  121 (122)
                      .+|||||+|||+||+|||+|+++|+++|++|||+|||+|
T Consensus        10 ~~mTpSL~NFl~SlvaG~vVvv~i~~aLi~VSq~D~v~R   48 (50)
T 3bz1_X           10 LTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQR   48 (50)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHheeeeccCcccc
Confidence            479999999999999999999999999999999999999

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00