Citrus Sinensis ID: 033738

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF
Secondary Structure (PSIPRED)
ccccccccEEccEEEcccccEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEccccccccccEEEEEcccccccEEEEEcccccEEEEEcccccEEEEEEcccccEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEcccccEEEEEcccEEEEEEcccccEEEEEccccccEEEEEEccccccccEEEEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEc
Coil and Loop (DISEMBL)
mirggrsyvssppafsndvkRLLVCTSNTvsifststglqissleghtapvttvivvpastpatkILSYCWTASLDETIKywdfstpellktidvkfpifsmvrgkkgfavf
Flexible Loop (DISEMBL)
mirggrsyvssppafsndVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVivvpastpatKILSYCWTASLDETIKYWDFSTPELLKTidvkfpifsmvrgkkgfavf
Low Complexity Region (SEG)
MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHtapvttvivvpastpatKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF
Disordered region (IsUnstruct)
*****************DVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKK*****
Disordered Region (DISOPRED)
MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF
Disordered Region (DISEMBL)
************PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF
Disordered Region (DISPRO)
******S**SSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q7ZVR1	832	WD repeat-containing prot	yes	no	0.937	0.126	0.312	2e-08
Q6DFC6	832	WD repeat-containing prot	N/A	no	0.785	0.105	0.343	3e-05
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.776	0.069	0.336	0.0008

>sp|Q7ZVR1|WDR75_DANRE WD repeat-containing protein 75 OS=Danio rerio GN=wdr75 PE=2 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 7/112 (6%)

Query: 1   MIRGGRSYVS-SPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPA 59
           ++R G S ++  PP  S+D + +L  + ++V ++ST T   + +L+GH   VT +    A
Sbjct: 9   VVRCGGSKINFRPPIISHDSRFVLCVSGDSVKVYSTRTEEWLHNLQGHNNQVTGI----A 64

Query: 60  STPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111
             PA ++  Y  + S D T+K WDF    L+KT  + +P++S+   +K   V
Sbjct: 65  FNPANQLQVY--SCSADGTVKLWDFIDGILIKTFVIGYPLYSLYVSEKHEGV 114

Danio rerio (taxid: 7955)

>sp|Q6DFC6|WDR75_XENLA WD repeat-containing protein 75 OS=Xenopus laevis GN=wdr75 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 8/96 (8%)

Query: 4   GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPA 63
           GG         FS D K L+  + + + ++STST   I +L+GH   VT + + P +   
Sbjct: 13  GGSKLDYRRSVFSADGKYLICVSGDFIKVYSTSTEECIHALQGHRKLVTGIELNPKNHLQ 72

Query: 64  TKILSYCWTASLDETIKYWDFSTPELLKT--IDVKF 97
                  ++ SLD TIK WDF+   L+KT  I  KF
Sbjct: 73  L------YSCSLDGTIKLWDFTDGILIKTFLIGCKF 102

Xenopus laevis (taxid: 8355)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 14/101 (13%)

Query: 12   PPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSY 69
            P AFS D +++L   SN  TV ++   TG  ISSLEGHT  +  +    A +P ++ L+ 
Sbjct: 941  PVAFSPD-RQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGI----AFSPDSQTLA- 994

Query: 70   CWTASLDETIKYWDFSTPE----LLKTIDVKFPIFSMVRGK 106
              +AS D +++ W+ ST +    LL+  D  + +    +GK
Sbjct: 995  --SASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGK 1033

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
3004552	812	unknown protein [Arabidopsis thaliana]	0.919	0.126	0.786	2e-42
30680505	804	transducin/WD-40 repeat-containing prote	0.919	0.128	0.786	2e-42
21539489	804	unknown protein [Arabidopsis thaliana]	0.919	0.128	0.786	2e-42
297832610	803	transducin family protein [Arabidopsis l	0.919	0.128	0.796	2e-42
224126109	812	predicted protein [Populus trichocarpa]	0.919	0.126	0.776	6e-40
224142241	811	predicted protein [Populus trichocarpa]	0.919	0.127	0.766	1e-39
255585028	807	wd40 protein, putative [Ricinus communis	0.892	0.123	0.766	1e-39
225451403	815	PREDICTED: WD repeat-containing protein	0.919	0.126	0.728	3e-38
449502945	810	PREDICTED: LOW QUALITY PROTEIN: WD repea	0.919	0.127	0.728	5e-38
449457177	810	PREDICTED: WD repeat-containing protein	0.919	0.127	0.728	5e-38

>gi|3004552|gb|AAC09025.1| unknown protein [Arabidopsis thaliana]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 93/103 (90%)

Query: 1   MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           M RGGRSYV+SPP+FSND K+LLVCT NTVS+FS +TGLQI+SLEGHTAPVTT+IVVPAS
Sbjct: 1   MKRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTAPVTTLIVVPAS 60

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
           +PA KIL YCWTASLD TI++WDFS PELLKTID + PI+SMV
Sbjct: 61  SPAQKILCYCWTASLDGTIRHWDFSGPELLKTIDAQLPIYSMV 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680505|ref|NP_179480.2| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|330251729|gb|AEC06823.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 93/103 (90%)

Query: 1   MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           M RGGRSYV+SPP+FSND K+LLVCT NTVS+FS +TGLQI+SLEGHTAPVTT+IVVPAS
Sbjct: 1   MKRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTAPVTTLIVVPAS 60

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
           +PA KIL YCWTASLD TI++WDFS PELLKTID + PI+SMV
Sbjct: 61  SPAQKILCYCWTASLDGTIRHWDFSGPELLKTIDAQLPIYSMV 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21539489|gb|AAM53297.1| unknown protein [Arabidopsis thaliana]

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 93/103 (90%)

Query: 1   MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           M RGGRSYV+SPP+FSND K+LLVCT NTVS+FS +TGLQI+SLEGHTAPVTT+IVVPAS
Sbjct: 1   MKRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTAPVTTLIVVPAS 60

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
           +PA KIL YCWTASLD TI++WDFS PELLKTID + PI+SMV
Sbjct: 61  SPAQKILCYCWTASLDGTIRHWDFSGPELLKTIDAQLPIYSMV 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832610|ref|XP_002884187.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297330027|gb|EFH60446.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/103 (79%), Positives = 93/103 (90%)

Query: 1   MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           MIRGGRSYV+SPP+FSND K+LLVCT NTVS+FS +TGLQI+SLEGHTA VTT+IVVPAS
Sbjct: 1   MIRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTALVTTLIVVPAS 60

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
           TPA KIL YCWTASLD TI++WDFS PELLKTID + PI+SMV
Sbjct: 61  TPAQKILCYCWTASLDGTIRHWDFSGPELLKTIDAQLPIYSMV 103

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126109|ref|XP_002329663.1| predicted protein [Populus trichocarpa] gi|222870544|gb|EEF07675.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 80/103 (77%), Positives = 90/103 (87%)

Query: 1   MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           MIRGGRSYV SPPAFSND KRLLVCT+N+V+IFST+TGL + SL+GHTA VT VIVVPAS
Sbjct: 1   MIRGGRSYVLSPPAFSNDAKRLLVCTANSVTIFSTATGLPVLSLDGHTALVTAVIVVPAS 60

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
           TPA+KIL YCWTASLD TI+YWDFS PEL+K I+V  PI SMV
Sbjct: 61  TPASKILCYCWTASLDGTIRYWDFSVPELIKIINVNLPIISMV 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142241|ref|XP_002324467.1| predicted protein [Populus trichocarpa] gi|222865901|gb|EEF03032.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/103 (76%), Positives = 90/103 (87%)

Query: 1   MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           MIRGGR+YVSSPPAFSND KRLLVC +N+VSIFST+TGL ++SL+GH A VT VIVVPAS
Sbjct: 1   MIRGGRNYVSSPPAFSNDAKRLLVCAANSVSIFSTATGLPVASLDGHRALVTAVIVVPAS 60

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
           TPA+KIL YCWTASLD TI+YWDFS PEL+K I+V  PI SMV
Sbjct: 61  TPASKILCYCWTASLDGTIRYWDFSVPELIKIINVNSPIISMV 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585028|ref|XP_002533224.1| wd40 protein, putative [Ricinus communis] gi|223526967|gb|EEF29164.1| wd40 protein, putative [Ricinus communis]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/103 (76%), Positives = 92/103 (89%), Gaps = 3/103 (2%)

Query: 1   MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           MI GG+SYV+SPPAFSND KRLLVC+ N+VSIFST+TGLQ++SLEGHTA VT VIVVPA+
Sbjct: 1   MITGGKSYVTSPPAFSNDAKRLLVCSGNSVSIFSTATGLQVASLEGHTALVTRVIVVPAT 60

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
              +KIL YCWTASLD TI+YWDFS PEL+KT+D+KFPIFSMV
Sbjct: 61  ---SKILCYCWTASLDGTIRYWDFSVPELIKTVDIKFPIFSMV 100

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451403|ref|XP_002266770.1| PREDICTED: WD repeat-containing protein 75 [Vitis vinifera] gi|296087114|emb|CBI33488.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/103 (72%), Positives = 90/103 (87%)

Query: 1   MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           MI+GG+S VSSPP FSND K+LLVCT  TVSIFSTST LQI+ LEGHTA VT+V+VVPA 
Sbjct: 1   MIKGGKSLVSSPPVFSNDAKKLLVCTGCTVSIFSTSTSLQITELEGHTALVTSVVVVPAF 60

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
           TP++KIL YCWT+SLD T++YWDFS PEL+KT+D++ PIFSMV
Sbjct: 61  TPSSKILCYCWTSSLDGTVRYWDFSLPELMKTVDIRLPIFSMV 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502945|ref|XP_004161786.1| PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 75-like [Cucumis sativus]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/103 (72%), Positives = 90/103 (87%)

Query: 1   MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           MI GG+SYVS+PPAFSND KRLLVCT  +VSIFSTSTGLQI+SL+GH A VT+V VVPAS
Sbjct: 1   MITGGKSYVSAPPAFSNDAKRLLVCTGTSVSIFSTSTGLQIASLKGHKAFVTSVTVVPAS 60

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
           + A+KIL +CWT SLD TI+YWDFS PEL+KTID++ P++SMV
Sbjct: 61  SAASKILCFCWTTSLDGTIRYWDFSIPELMKTIDIRLPVYSMV 103

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457177|ref|XP_004146325.1| PREDICTED: WD repeat-containing protein 75-like [Cucumis sativus]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/103 (72%), Positives = 90/103 (87%)

Query: 1   MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           MI GG+SYVS+PPAFSND KRLLVCT  +VSIFSTSTGLQI+SL+GH A VT+V VVPAS
Sbjct: 1   MITGGKSYVSAPPAFSNDAKRLLVCTGTSVSIFSTSTGLQIASLKGHKAFVTSVTVVPAS 60

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
           + A+KIL +CWT SLD TI+YWDFS PEL+KTID++ P++SMV
Sbjct: 61  SAASKILCFCWTTSLDGTIRYWDFSIPELMKTIDIRLPVYSMV 103

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2044480	804	AT2G18900 "AT2G18900" [Arabido	0.919	0.128	0.650	2.8e-31
TAIR|locus:2079266	764	AT3G26480 "AT3G26480" [Arabido	0.892	0.130	0.495	7.4e-22
ZFIN|ZDB-GENE-030616-5	832	wdr75 "WD repeat domain 75" [D	0.892	0.120	0.293	1.6e-05

TAIR|locus:2044480 AT2G18900 "AT2G18900" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.8e-31, P = 2.8e-31
 Identities = 67/103 (65%), Positives = 77/103 (74%)

Query:     1 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHXXXXXXXXXXXXX 60
             M RGGRSYV+SPP+FSND K+LLVCT NTVS+FS +TGLQI+SLEGH             
Sbjct:     1 MKRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTAPVTTLIVVPAS 60

Query:    61 XXXXKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
                 KIL YCWTASLD TI++WDFS PELLKTID + PI+SMV
Sbjct:    61 SPAQKILCYCWTASLDGTIRHWDFSGPELLKTIDAQLPIYSMV 103

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2079266 AT3G26480 "AT3G26480" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 7.4e-22, P = 7.4e-22
 Identities = 51/103 (49%), Positives = 69/103 (66%)

Query:     1 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHXXXXXXXXXXXXX 60
             MIRGGR+ ++S PAFS D K+LL+CT+NTVS++S +TGL+I+SLE H             
Sbjct:     1 MIRGGRNNITSAPAFSKDAKKLLLCTANTVSVYSVATGLKITSLEDHTAPVTSVIVDPSS 60

Query:    61 XXXXKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
                 + +SYCWT+SLD  I+ W+FS P+LLK  D   PI S+V
Sbjct:    61 D---ETVSYCWTSSLDGKIRIWEFSAPKLLKIFDTHLPIHSLV 100

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030616-5 wdr75 "WD repeat domain 75" [Danio rerio (taxid:7955)]

 Score = 113 (44.8 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 32/109 (29%), Positives = 56/109 (51%)

Query:     1 MIRGGRSYVS-SPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHXXXXXXXXXXX 58
             ++R G S ++  PP  S+D  R ++C S ++V ++ST T   + +L+GH           
Sbjct:     9 VVRCGGSKINFRPPIISHD-SRFVLCVSGDSVKVYSTRTEEWLHNLQGHNNQVTGIAFNP 67

Query:    59 XXXXXXKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKK 107
                   ++ S C   S D T+K WDF    L+KT  + +P++S+   +K
Sbjct:    68 ANQL--QVYS-C---SADGTVKLWDFIDGILIKTFVIGYPLYSLYVSEK 110


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112        95   0.00091  102 3  11 22  0.48    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  106 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.67u 0.11s 9.78t   Elapsed:  00:00:01
  Total cpu time:  9.67u 0.11s 9.78t   Elapsed:  00:00:01
  Start:  Fri May 10 02:18:16 2013   End:  Fri May 10 02:18:17 2013

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT2G18900	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repeat family protein; FUNCTIONS IN- nucleotide binding; INVOLVED IN- biological_process unknown; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 11 growth stages; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680); BEST Arabidopsis thaliana protein match is- transducin family protein / WD-40 repeat family protein (TAIR-AT3G26480.1); Has 3365 Blast hits to 22 [...] (804 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	NRPA2	NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding; Encodes a subunit of [...] (1178 aa)				•					0.692
	AT1G15440	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (900 aa)				•				•	0.690
	AT3G10530	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (536 aa)				•					0.686
	APUM24	APUM24 (Arabidopsis Pumilio 24); RNA binding / binding; Arabidopsis Pumilio 24 (APUM24); FUNCTI [...] (641 aa)				•					0.675
	AT3G06530	binding; binding; FUNCTIONS IN- binding; LOCATED IN- chloroplast, vacuole; EXPRESSED IN- 22 pla [...] (2152 aa)				•					0.659
	AT4G04940	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (910 aa)				•				•	0.641
	AT1G18850	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (399 aa)				•					0.629
	AT2G40360	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (753 aa)				•					0.625
	AT4G05410	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (504 aa)				•					0.615
	AT3G18600	DEAD/DEAH box helicase, putative; DEAD/DEAH box helicase, putative; FUNCTIONS IN- helicase acti [...] (568 aa)				•					0.615

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.001
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.003
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 2  IRGGRSYVSSPPAFSNDVKRLLV-CTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
          ++G    V+   AFS D K L       T+ ++   TG  + +L+GHT PV  V      
Sbjct: 5  LKGHTGGVTCV-AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63

Query: 61 TPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
             T + S     S D+TI+ WD  T E ++T+
Sbjct: 64 ---TYLAS----GSSDKTIRLWDLETGECVRTL 89

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPA 59
           + G  SYVSS  AFS D  R+L  +S   T+ ++   TG  +++L GHT  V +V     
Sbjct: 89  LTGHTSYVSSV-AFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF--- 143

Query: 60  STPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
            +P    ++   ++S D TIK WD  T + + T+
Sbjct: 144 -SPDGTFVA---SSSQDGTIKLWDLRTGKCVATL 173

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 8/81 (9%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
           A S D   L   +S  T+ ++   TG  + +L GHT+ V++V    A +P  +ILS   +
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV----AFSPDGRILS---S 110

Query: 73  ASLDETIKYWDFSTPELLKTI 93
           +S D+TIK WD  T + L T+
Sbjct: 111 SSRDKTIKVWDVETGKCLTTL 131

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 8/81 (9%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
           AFS D ++LL  +S  T+ ++  STG  + +L GH   V +V    A +P   +L+   +
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV----AFSPDGYLLA---S 236

Query: 73  ASLDETIKYWDFSTPELLKTI 93
            S D TI+ WD  T E ++T+
Sbjct: 237 GSEDGTIRVWDLRTGECVQTL 257

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 25  CTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84
               T+ ++   TG  +++L GHT  V +V   P      K+L    ++S D TIK WD 
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---EKLL----SSSSDGTIKLWDL 206

Query: 85  STPELLKTI 93
           ST + L T+
Sbjct: 207 STGKCLGTL 215

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 10/72 (13%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
           AFS D   LL   S   T+ ++   TG  + +L GHT  VT++    A +P  K L+   
Sbjct: 226 AFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL----AWSPDGKRLA--- 277

Query: 72  TASLDETIKYWD 83
           + S D TI+ WD
Sbjct: 278 SGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 37.0 bits (84), Expect = 9e-04
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQ-ISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
           +FS D   L   +S  T+ ++   +    + +L GH++ V +V   P             
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG-------KLLA 300

Query: 72  TASLDETIKYWDFSTPELLKTIDVK 96
           + S D T++ WD  T +LL ++ +K
Sbjct: 301 SGSSDGTVRLWDLETGKLLSSLTLK 325

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 33.8 bits (78), Expect = 0.001
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 7/47 (14%)

Query: 37 TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83
          +G  + +L+GHT PVT+V   P          Y  + S D TIK WD
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDG-------KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 41 ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKT 92
            +L+GHT  VT V   P             T S D TIK WD  T ELL+T
Sbjct: 2  RRTLKGHTGGVTCVAFSPDG-------KLLATGSGDGTIKVWDLETGELLRT 46

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
           AFS D K L   +S   T+ ++   TG  +S+L GHT PV+++   P             
Sbjct: 162 AFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA------ 215

Query: 72  TASLDETIKYWDFSTPELLKT 92
           + S D TI+ WD ST +LL++
Sbjct: 216 SGSSDGTIRLWDLSTGKLLRS 236

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.9
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.9
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.9
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.89
KOG0266	456	consensus WD40 repeat-containing protein [General	99.87
KOG0266	456	consensus WD40 repeat-containing protein [General	99.87
PTZ00421	493	coronin; Provisional	99.86
KOG0286	343	consensus G-protein beta subunit [General function	99.86
KOG0286	343	consensus G-protein beta subunit [General function	99.86
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.85
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.85
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.84
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.83
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.83
PTZ00420	568	coronin; Provisional	99.83
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.82
PTZ00421	493	coronin; Provisional	99.8
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.8
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.79
KOG0643	327	consensus Translation initiation factor 3, subunit	99.79
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.78
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.78
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.78
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.77
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.77
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.77
KOG0645	312	consensus WD40 repeat protein [General function pr	99.77
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.77
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.76
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.76
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.75
KOG0645	312	consensus WD40 repeat protein [General function pr	99.75
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.75
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.74
KOG1273	405	consensus WD40 repeat protein [General function pr	99.74
KOG0289	506	consensus mRNA splicing factor [General function p	99.74
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.74
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.74
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.73
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.73
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.72
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.72
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.71
PTZ00420	568	coronin; Provisional	99.71
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.71
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.71
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.71
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.71
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.7
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.7
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.7
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.7
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.7
KOG0296	399	consensus Angio-associated migratory cell protein	99.69
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.67
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.67
KOG0296	399	consensus Angio-associated migratory cell protein	99.67
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.67
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.67
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.66
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.66
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.66
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.66
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.66
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.65
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.64
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.64
KOG1539	910	consensus WD repeat protein [General function pred	99.64
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.63
KOG0267	825	consensus Microtubule severing protein katanin p80	99.63
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.63
PLN00181	793	protein SPA1-RELATED; Provisional	99.63
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.63
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.62
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.62
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.62
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.61
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.61
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.61
KOG2096	420	consensus WD40 repeat protein [General function pr	99.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.6
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.59
PLN00181	793	protein SPA1-RELATED; Provisional	99.59
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.59
KOG0289	506	consensus mRNA splicing factor [General function p	99.59
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.59
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.58
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.58
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.57
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.57
KOG0267	825	consensus Microtubule severing protein katanin p80	99.57
KOG0639	705	consensus Transducin-like enhancer of split protei	99.57
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.56
KOG1273	405	consensus WD40 repeat protein [General function pr	99.56
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.56
KOG0646	476	consensus WD40 repeat protein [General function pr	99.56
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.56
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.54
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.54
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.53
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.53
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.52
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.52
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.51
KOG0641	350	consensus WD40 repeat protein [General function pr	99.51
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.51
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.51
KOG1274	933	consensus WD40 repeat protein [General function pr	99.5
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.5
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.49
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.49
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.48
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.48
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.48
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.48
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.47
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.47
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.47
KOG2139	445	consensus WD40 repeat protein [General function pr	99.46
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.46
KOG0643	327	consensus Translation initiation factor 3, subunit	99.45
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.43
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.43
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.43
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.43
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.41
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.41
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.41
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.4
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.4
KOG0639	705	consensus Transducin-like enhancer of split protei	99.4
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.37
KOG1310	758	consensus WD40 repeat protein [General function pr	99.36
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.35
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.35
KOG0646	476	consensus WD40 repeat protein [General function pr	99.34
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.34
KOG1539	910	consensus WD repeat protein [General function pred	99.33
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.32
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.32
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.32
KOG1274	933	consensus WD40 repeat protein [General function pr	99.32
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.31
KOG0649	325	consensus WD40 repeat protein [General function pr	99.31
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.31
PRK05137	435	tolB translocation protein TolB; Provisional	99.31
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.31
PRK01742	429	tolB translocation protein TolB; Provisional	99.3
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.3
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.29
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.28
KOG2048	691	consensus WD40 repeat protein [General function pr	99.28
KOG2096	420	consensus WD40 repeat protein [General function pr	99.27
PRK03629	429	tolB translocation protein TolB; Provisional	99.27
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.26
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.25
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.25
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.24
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.24
PRK04922	433	tolB translocation protein TolB; Provisional	99.24
KOG2048	691	consensus WD40 repeat protein [General function pr	99.22
KOG0641	350	consensus WD40 repeat protein [General function pr	99.22
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.22
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.22
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.22
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.21
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.21
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.19
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.18
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.18
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.17
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.17
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.17
KOG2055	514	consensus WD40 repeat protein [General function pr	99.15
PRK02889	427	tolB translocation protein TolB; Provisional	99.15
KOG1963	792	consensus WD40 repeat protein [General function pr	99.15
PRK00178	430	tolB translocation protein TolB; Provisional	99.14
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.14
KOG0649	325	consensus WD40 repeat protein [General function pr	99.14
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.13
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.13
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.12
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.11
KOG4328	498	consensus WD40 protein [Function unknown]	99.11
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.1
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.1
PRK04792	448	tolB translocation protein TolB; Provisional	99.1
PRK05137	435	tolB translocation protein TolB; Provisional	99.1
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.1
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.09
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.09
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.08
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.07
PRK03629	429	tolB translocation protein TolB; Provisional	99.07
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.06
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.06
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.06
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.05
PRK01029	428	tolB translocation protein TolB; Provisional	99.04
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.03
KOG1188	376	consensus WD40 repeat protein [General function pr	99.02
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.01
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.01
KOG4547	541	consensus WD40 repeat-containing protein [General	99.01
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.01
KOG4227	609	consensus WD40 repeat protein [General function pr	99.01
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.01
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.0
COG2319	466	FOG: WD40 repeat [General function prediction only	99.0
KOG2055	514	consensus WD40 repeat protein [General function pr	98.99
PRK04922	433	tolB translocation protein TolB; Provisional	98.99
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.99
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.98
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.98
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.98
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.97
COG4946	668	Uncharacterized protein related to the periplasmic	98.93
PRK04792	448	tolB translocation protein TolB; Provisional	98.92
KOG4328	498	consensus WD40 protein [Function unknown]	98.92
PRK01742	429	tolB translocation protein TolB; Provisional	98.9
PRK02889	427	tolB translocation protein TolB; Provisional	98.9
PRK04043	419	tolB translocation protein TolB; Provisional	98.89
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.87
COG2319	466	FOG: WD40 repeat [General function prediction only	98.87
PRK00178	430	tolB translocation protein TolB; Provisional	98.86
PRK01029	428	tolB translocation protein TolB; Provisional	98.83
PRK11028	330	6-phosphogluconolactonase; Provisional	98.83
KOG2139	445	consensus WD40 repeat protein [General function pr	98.82
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.81
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.8
KOG2315	566	consensus Predicted translation initiation factor	98.79
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.79
KOG2321	703	consensus WD40 repeat protein [General function pr	98.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.77
PRK11028	330	6-phosphogluconolactonase; Provisional	98.66
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.64
KOG2315	566	consensus Predicted translation initiation factor	98.62
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.61
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.6
KOG1963	792	consensus WD40 repeat protein [General function pr	98.57
KOG4227	609	consensus WD40 repeat protein [General function pr	98.56
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.56
KOG1188	376	consensus WD40 repeat protein [General function pr	98.54
COG4946	668	Uncharacterized protein related to the periplasmic	98.53
PRK04043	419	tolB translocation protein TolB; Provisional	98.5
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.47
KOG1310	758	consensus WD40 repeat protein [General function pr	98.47
KOG2321	703	consensus WD40 repeat protein [General function pr	98.46
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.46
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.44
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.38
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.34
KOG2314	698	consensus Translation initiation factor 3, subunit	98.29
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.28
KOG1334	559	consensus WD40 repeat protein [General function pr	98.27
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.24
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.23
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.23
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.23
KOG2695	425	consensus WD40 repeat protein [General function pr	98.2
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.18
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.15
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.14
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.13
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.12
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.11
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.08
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.08
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.08
KOG1334	559	consensus WD40 repeat protein [General function pr	98.07
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.99
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.99
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.99
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.99
KOG4547	541	consensus WD40 repeat-containing protein [General	97.99
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.98
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.98
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.95
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.94
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.83
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.82
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.81
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.81
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.8
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.77
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.74
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.7
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.7
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.69
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.68
PRK02888	635	nitrous-oxide reductase; Validated	97.67
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.66
KOG2695	425	consensus WD40 repeat protein [General function pr	97.62
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.6
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.59
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.57
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.53
KOG2314	698	consensus Translation initiation factor 3, subunit	97.53
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.5
KOG3621	726	consensus WD40 repeat-containing protein [General	97.5
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.47
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.45
PRK13616	591	lipoprotein LpqB; Provisional	97.41
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.37
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.34
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.32
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.27
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.26
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.25
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.24
PRK02888	635	nitrous-oxide reductase; Validated	97.2
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.17
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.17
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.08
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.06
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.06
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.04
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.01
COG3391	381	Uncharacterized conserved protein [Function unknow	96.97
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.95
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.93
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.86
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.8
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.78
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.73
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.68
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.67
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.63
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	96.52
PRK13616	591	lipoprotein LpqB; Provisional	96.5
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.5
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.48
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.43
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.43
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.42
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.38
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.32
COG3391	381	Uncharacterized conserved protein [Function unknow	96.29
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	96.22
PRK10115	686	protease 2; Provisional	96.19
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	96.14
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.1
KOG2395	644	consensus Protein involved in vacuole import and d	96.02
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.97
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	95.96
KOG3621	726	consensus WD40 repeat-containing protein [General	95.88
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.85
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.79
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	95.7
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.62
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	95.62
KOG1409	404	consensus Uncharacterized conserved protein, conta	95.57
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	95.54
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.51
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.51
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.48
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.32
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.2
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	95.05
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	95.0
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.96
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	94.87
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.82
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.75
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	94.58
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.52
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.35
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	94.3
KOG2444	238	consensus WD40 repeat protein [General function pr	93.9
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.85
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	93.3
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.3
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.16
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.14
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.12
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	92.86
KOG2727	1244	consensus Rab3 GTPase-activating protein, non-cata	92.77
KOG1008	783	consensus Uncharacterized conserved protein, conta	92.33
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.99
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.82
KOG1008	783	consensus Uncharacterized conserved protein, conta	91.41
KOG2444	238	consensus WD40 repeat protein [General function pr	91.4
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	91.36
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	90.44
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	90.29
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	90.05
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	89.74
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.65
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.46
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.08
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.81
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	88.38
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	88.05
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	87.94
COG5167	776	VID27 Protein involved in vacuole import and degra	87.92
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	87.75
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	87.48
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.39
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	87.1
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.01
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	86.95
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	86.3
KOG2395	644	consensus Protein involved in vacuole import and d	85.14
KOG2247	615	consensus WD40 repeat-containing protein [General	85.12
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	84.89
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	84.65
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	84.31
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	84.2
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	83.94
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	83.33
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	83.21
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	82.24
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	81.77
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	81.25
KOG3616	1636	consensus Selective LIM binding factor [Transcript	80.93

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.90  E-value=3.6e-23  Score=130.78  Aligned_cols=103  Identities=25%  Similarity=0.436  Sum_probs=97.4

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      ++.||.+.|.| +.|+|+.+++++|+ |.+|++||..+|..++.|.+|.++|.++++||+|.       ++++++.|+.|
T Consensus       530 ifaghlsDV~c-v~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr-------~LaSg~ed~~I  601 (707)
T KOG0263|consen  530 IFAGHLSDVDC-VSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR-------YLASGDEDGLI  601 (707)
T ss_pred             hhcccccccce-EEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc-------eEeecccCCcE
Confidence            46899999998 99999999999999 99999999999999999999999999999999996       88999999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .+||+.+|+.+..+..|. .+.++.|+.+|..+
T Consensus       602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vL  634 (707)
T KOG0263|consen  602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVL  634 (707)
T ss_pred             EEEEcCCCcchhhhhcccCceeEEEEecCCCEE
Confidence            999999999998888877 99999999999876

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.5e-23  Score=123.06  Aligned_cols=97  Identities=24%  Similarity=0.264  Sum_probs=89.1

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.||.+.|.+ +.|+|+|..|++|+ |.++++||+.+..+....++|...|.|++|+||+.       .+++++.||.|+
T Consensus       111 ~~GH~e~Vl~-~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk-------~iASG~~dg~I~  182 (480)
T KOG0271|consen  111 IAGHGEAVLS-VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK-------KIASGSKDGSIR  182 (480)
T ss_pred             cCCCCCcEEE-EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc-------hhhccccCCeEE
Confidence            6799999998 99999999999998 99999999999988999999999999999999995       777999999999


Q ss_pred             EEeCCCCceE-EEEecCC-CEEEEEEcC
Q 033738           81 YWDFSTPELL-KTIDVKF-PIFSMVRGK  106 (112)
Q Consensus        81 ~~~~~~~~~~-~~~~~~~-~v~~~~~~~  106 (112)
                      +||.++|+.+ ..+..|. ++.+++|.|
T Consensus       183 lwdpktg~~~g~~l~gH~K~It~Lawep  210 (480)
T KOG0271|consen  183 LWDPKTGQQIGRALRGHKKWITALAWEP  210 (480)
T ss_pred             EecCCCCCcccccccCcccceeEEeecc
Confidence            9999988664 6677777 999999986

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5.3e-23  Score=122.35  Aligned_cols=102  Identities=25%  Similarity=0.383  Sum_probs=95.8

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      ..||...|.. +.||||++++++++ |.+|++|+.++|+.+..|.+|-+.|..++|+.|.+       ++++++.|.+++
T Consensus       363 mtgHq~lVn~-V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-------LlVS~SkDsTLK  434 (480)
T KOG0271|consen  363 MTGHQALVNH-VSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-------LLVSGSKDSTLK  434 (480)
T ss_pred             hhchhhheee-EEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-------EEEEcCCCceEE
Confidence            3689999998 99999999999999 99999999999999999999999999999999986       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +|++++.+....+++|. .|+++.|+|||..+
T Consensus       435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV  466 (480)
T KOG0271|consen  435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRV  466 (480)
T ss_pred             EEEeeeeeecccCCCCCceEEEEEecCCCcee
Confidence            99999999989999877 99999999999865

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=2e-23  Score=124.86  Aligned_cols=102  Identities=23%  Similarity=0.311  Sum_probs=96.5

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |+||...|.. ++|+|+|++|++++ |.+=++||+.++..+....+|...|.+++|.++|.       ++++|+.|..-+
T Consensus       257 l~gH~~RVs~-VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-------L~~tGGlD~~~R  328 (459)
T KOG0272|consen  257 LEGHLARVSR-VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-------LAATGGLDSLGR  328 (459)
T ss_pred             hhcchhhhee-eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc-------eeeccCccchhh
Confidence            6789999998 99999999999999 99999999999988888899999999999999994       888999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||+++|+++..+.+|. +|.++.|+|+|..+
T Consensus       329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~l  360 (459)
T KOG0272|consen  329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHL  360 (459)
T ss_pred             eeecccCcEEEEecccccceeeEeECCCceEE
Confidence            99999999999999988 99999999999875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.87  E-value=6e-21  Score=119.48  Aligned_cols=102  Identities=27%  Similarity=0.383  Sum_probs=94.5

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeC-CCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFST-STGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.+|...|.. ++|+|+++.+++++ |.++++||+ ..+..++.+.+|...|++++|+|++.       .+++++.|+++
T Consensus       199 l~~h~~~v~~-~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-------~i~Sgs~D~tv  270 (456)
T KOG0266|consen  199 LSGHTRGVSD-VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-------LLVSGSDDGTV  270 (456)
T ss_pred             ccccccceee-eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC-------EEEEecCCCcE
Confidence            3679999998 99999999999999 899999999 55678899999999999999999995       77899999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ++||++++++...+..|. .+.+++|+++++.+
T Consensus       271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l  303 (456)
T KOG0266|consen  271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLL  303 (456)
T ss_pred             EEEeccCCeEEEeeeccCCceEEEEECCCCCEE
Confidence            999999999999999998 99999999999876

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.87  E-value=7.1e-21  Score=119.15  Aligned_cols=104  Identities=30%  Similarity=0.448  Sum_probs=92.9

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +++||...|++ ++|+|+|+.+++|+ |++|++||+++++....+..|...|.+++|++++.       ++++++.|+.+
T Consensus       241 ~l~gH~~~v~~-~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~-------~l~s~s~d~~i  312 (456)
T KOG0266|consen  241 TLKGHSTYVTS-VAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN-------LLVSASYDGTI  312 (456)
T ss_pred             EecCCCCceEE-EEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC-------EEEEcCCCccE
Confidence            36899999998 99999999999999 99999999999999999999999999999999995       77789999999


Q ss_pred             EEEeCCCCc--eEEEEecCC---CEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPE--LLKTIDVKF---PIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~--~~~~~~~~~---~v~~~~~~~~~~~~~  112 (112)
                      ++||+.++.  +...+..+.   ++.++.|+|++.+++
T Consensus       313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll  350 (456)
T KOG0266|consen  313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL  350 (456)
T ss_pred             EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE
Confidence            999999998  555655443   489999999999874

>PTZ00421 coronin; Provisional

Probab=99.86  E-value=1.9e-20  Score=117.73  Aligned_cols=103  Identities=21%  Similarity=0.303  Sum_probs=89.5

Q ss_pred             ccCCCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCC-------ceeeeccccCCceEEEEEecCCCCccceeEEEEe
Q 033738            2 IRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTG-------LQISSLEGHTAPVTTVIVVPASTPATKILSYCWT   72 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   72 (112)
                      +.||.+.|.+ ++|+| +++.|++++ |+.|++||+..+       ..+..+.+|...|.+++|+|++.      .++++
T Consensus        71 l~GH~~~V~~-v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~------~iLaS  143 (493)
T PTZ00421         71 LLGQEGPIID-VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM------NVLAS  143 (493)
T ss_pred             EeCCCCCEEE-EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC------CEEEE
Confidence            5789999998 99999 889999998 999999998754       23567788999999999999863      26779


Q ss_pred             eecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           73 ASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        73 ~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ++.|+.|++||+.+++.+..+..+. .|.+++|+|+|..+
T Consensus       144 gs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lL  183 (493)
T PTZ00421        144 AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLL  183 (493)
T ss_pred             EeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEE
Confidence            9999999999999998888887766 89999999999876

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.86  E-value=1.7e-20  Score=108.45  Aligned_cols=101  Identities=24%  Similarity=0.348  Sum_probs=91.0

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEec-CCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP-ASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.||++++.+ +.|-+|++ |++++ |.++.+||+++++.+..|.+|.+.|.+++++| +++       .+++++-|+..
T Consensus       141 l~gHtgylSc-C~f~dD~~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-------tFvSg~cD~~a  211 (343)
T KOG0286|consen  141 LAGHTGYLSC-CRFLDDNH-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-------TFVSGGCDKSA  211 (343)
T ss_pred             ecCccceeEE-EEEcCCCc-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-------eEEecccccce
Confidence            6899999998 88988655 55665 99999999999999999999999999999999 564       77899999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ++||++.+.+.+++..|. .|++++|.|+|.-+
T Consensus       212 klWD~R~~~c~qtF~ghesDINsv~ffP~G~af  244 (343)
T KOG0286|consen  212 KLWDVRSGQCVQTFEGHESDINSVRFFPSGDAF  244 (343)
T ss_pred             eeeeccCcceeEeecccccccceEEEccCCCee
Confidence            999999999999999987 99999999999754

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.86  E-value=1.3e-20  Score=108.91  Aligned_cols=103  Identities=21%  Similarity=0.300  Sum_probs=95.4

Q ss_pred             ccCCCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      |.||.+.|.+ ++++| +++.+++|+ |...++||++.+.....|.+|+..|+.+.|.|++.       -+++|+.|++.
T Consensus       182 f~GH~gDV~s-lsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-------afatGSDD~tc  253 (343)
T KOG0286|consen  182 FHGHTGDVMS-LSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-------AFATGSDDATC  253 (343)
T ss_pred             ecCCcccEEE-EecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC-------eeeecCCCcee
Confidence            6799999998 99999 899999998 99999999999999999999999999999999995       68899999999


Q ss_pred             EEEeCCCCceEEEEecCC---CEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVKF---PIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~  112 (112)
                      |+||++....+..+....   ++++++|+..|+++|
T Consensus       254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLf  289 (343)
T KOG0286|consen  254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLF  289 (343)
T ss_pred             EEEeecCCcEEeeeccCcccCCceeEEEcccccEEE
Confidence            999999988888887654   899999999999886

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=4.2e-21  Score=115.11  Aligned_cols=102  Identities=25%  Similarity=0.232  Sum_probs=93.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      .+||...|.+ ++|.+||.++++|+ |..-++||++++.++-.+.+|..+|..++|+|+|.       .++||+.|++++
T Consensus       299 QEGHs~~v~~-iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy-------~lATgs~Dnt~k  370 (459)
T KOG0272|consen  299 QEGHSKGVFS-IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY-------HLATGSSDNTCK  370 (459)
T ss_pred             hcccccccce-eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce-------EEeecCCCCcEE
Confidence            3689999998 99999999999999 99999999999999999999999999999999994       678999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcC-CCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGK-KGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~~~  111 (112)
                      +||++....+.++..|. -|..+.|.| .|.+|
T Consensus       371 VWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL  403 (459)
T KOG0272|consen  371 VWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFL  403 (459)
T ss_pred             EeeecccccceecccccchhhheEecccCCeEE
Confidence            99999988899999888 899999998 44443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.85  E-value=2.7e-20  Score=113.05  Aligned_cols=108  Identities=21%  Similarity=0.337  Sum_probs=95.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCc---cceeEEEEeeecCC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPA---TKILSYCWTASLDE   77 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~d~   77 (112)
                      +.||.+.|.+ +.|+|.|.+|++++ |+++++|..........+..|...+..+.|+|+++..   ..-. .+++++.|+
T Consensus       355 ~~GH~g~V~a-lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~-~l~sas~ds  432 (524)
T KOG0273|consen  355 FIGHHGEVNA-LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNL-MLASASFDS  432 (524)
T ss_pred             eecccCceEE-EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCc-eEEEeecCC
Confidence            6789999998 99999999999999 8999999988777888999999999999999976411   1112 678999999


Q ss_pred             cEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           78 TIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        78 ~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ++++||+..|.++.++..|. +|++++|+|+|+++
T Consensus       433 tV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl  467 (524)
T KOG0273|consen  433 TVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL  467 (524)
T ss_pred             eEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence            99999999999999997776 99999999999986

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.84  E-value=1.9e-20  Score=118.65  Aligned_cols=102  Identities=23%  Similarity=0.309  Sum_probs=96.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      ++||..+|.+ +.|+|-|-++++++ |++-++|......+.+.+.+|.+.|.|+.|+|+..       |+++|+.|.++|
T Consensus       489 y~GH~~PVwd-V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~-------Y~aTGSsD~tVR  560 (707)
T KOG0263|consen  489 YKGHLAPVWD-VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSN-------YVATGSSDRTVR  560 (707)
T ss_pred             ecCCCcceee-EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCccc-------ccccCCCCceEE
Confidence            5789999998 99999999999999 99999999998888999999999999999999994       999999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||..+|..++.+.+|. +|.+++|+|+|.++
T Consensus       561 lWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L  592 (707)
T KOG0263|consen  561 LWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL  592 (707)
T ss_pred             EEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence            99999999999999987 99999999999987

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.83  E-value=1.2e-19  Score=104.23  Aligned_cols=99  Identities=20%  Similarity=0.318  Sum_probs=89.1

Q ss_pred             CCCCcCCCeEEcCC--CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            5 GRSYVSSPPAFSND--VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         5 h~~~v~~~~~~~~~--~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      |.+.|.+ ++|+|+  ...+++++ |++|++||+++-+....+.+|.+.++.+++||||.       ++++|+.|+.+.+
T Consensus       147 ~~~WVsc-vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-------lcasGgkdg~~~L  218 (315)
T KOG0279|consen  147 HREWVSC-VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-------LCASGGKDGEAML  218 (315)
T ss_pred             CcCcEEE-EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC-------EEecCCCCceEEE
Confidence            3677888 999998  46788888 99999999998887889999999999999999995       7889999999999


Q ss_pred             EeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ||++.++++..+.....|.+++|+|+-..|
T Consensus       219 wdL~~~k~lysl~a~~~v~sl~fspnrywL  248 (315)
T KOG0279|consen  219 WDLNEGKNLYSLEAFDIVNSLCFSPNRYWL  248 (315)
T ss_pred             EEccCCceeEeccCCCeEeeEEecCCceeE
Confidence            999999999999888899999999986554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.83  E-value=2e-19  Score=103.35  Aligned_cols=98  Identities=22%  Similarity=0.243  Sum_probs=87.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |+||...|.. +..++||++.++++ |+.+++||+.+++..+.|.+|...|.+++++++.+       .+++++.|.++.
T Consensus        59 ~~GHsH~v~d-v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~-------qivSGSrDkTik  130 (315)
T KOG0279|consen   59 LTGHSHFVSD-VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR-------QIVSGSRDKTIK  130 (315)
T ss_pred             eeccceEecc-eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc-------eeecCCCcceee
Confidence            6899999998 99999999999999 99999999999999999999999999999999994       566999999999


Q ss_pred             EEeCCCCceEEEEecC--C-CEEEEEEcCCC
Q 033738           81 YWDFSTPELLKTIDVK--F-PIFSMVRGKKG  108 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~--~-~v~~~~~~~~~  108 (112)
                      +|+.. |.+..++..+  . +|.+++|+|+.
T Consensus       131 lwnt~-g~ck~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen  131 LWNTL-GVCKYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             eeeec-ccEEEEEecCCCcCcEEEEEEcCCC
Confidence            99987 5565555443  3 89999999984

>PTZ00420 coronin; Provisional

Probab=99.83  E-value=5.4e-19  Score=112.34  Aligned_cols=103  Identities=16%  Similarity=0.220  Sum_probs=87.0

Q ss_pred             ccCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCc--------eeeeccccCCceEEEEEecCCCCccceeEEEE
Q 033738            2 IRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGL--------QISSLEGHTAPVTTVIVVPASTPATKILSYCW   71 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   71 (112)
                      +.+|.+.|.+ ++|+|+ ++.|++++ |+.|++||+.++.        ....+.+|...|.+++|+|++.      .+++
T Consensus        70 L~gH~~~V~~-lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~------~iLa  142 (568)
T PTZ00420         70 LKGHTSSILD-LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY------YIMC  142 (568)
T ss_pred             EcCCCCCEEE-EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCC------eEEE
Confidence            5789999998 999997 78999998 9999999997532        2335677889999999999885      2456


Q ss_pred             eeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           72 TASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        72 ~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +++.|+.+++||+++++.+..+..+..+.+++|+|+|..+
T Consensus       143 SgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lL  182 (568)
T PTZ00420        143 SSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLL  182 (568)
T ss_pred             EEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEE
Confidence            8999999999999999887777666689999999999876

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.82  E-value=3.8e-20  Score=110.81  Aligned_cols=103  Identities=21%  Similarity=0.302  Sum_probs=92.8

Q ss_pred             ccCCC-CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGR-SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~-~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +++|. ..|.+ ++|+|+...+++++ |++|++||....+....+.+|.-.|.+++|+|...       .+++++.|..|
T Consensus       175 ~~ahh~eaIRd-lafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-------LiasgskDnlV  246 (464)
T KOG0284|consen  175 IQAHHAEAIRD-LAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-------LIASGSKDNLV  246 (464)
T ss_pred             hhHhhhhhhhe-eccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc-------eeEEccCCcee
Confidence            34554 88998 99999999999998 89999999988877788899999999999999884       78899999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      ++||.++|.|+.++..|. .|..+.|+|++++|.
T Consensus       247 KlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Ll  280 (464)
T KOG0284|consen  247 KLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLL  280 (464)
T ss_pred             EeecCCCcchhhhhhhccceEEEEEEcCCCCeeE
Confidence            999999999999998887 999999999998763

>PTZ00421 coronin; Provisional

Probab=99.80  E-value=5e-18  Score=106.98  Aligned_cols=102  Identities=13%  Similarity=0.182  Sum_probs=86.7

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.+|...|.+ ++|+|++ +.|++++ |+.|++||+++++....+..|...|.+++|+|++.       ++++++.|+.+
T Consensus       121 L~gH~~~V~~-l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-------lLatgs~Dg~I  192 (493)
T PTZ00421        121 LQGHTKKVGI-VSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-------LLCTTSKDKKL  192 (493)
T ss_pred             ecCCCCcEEE-EEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-------EEEEecCCCEE
Confidence            5689999998 9999986 6888888 99999999999888888888999999999999995       77899999999


Q ss_pred             EEEeCCCCceEEEEecCC--CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKF--PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~  111 (112)
                      ++||+++++.+..+..|.  ....+.|.+++..+
T Consensus       193 rIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i  226 (493)
T PTZ00421        193 NIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI  226 (493)
T ss_pred             EEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence            999999998888877665  34456777766544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=3.3e-18  Score=109.05  Aligned_cols=101  Identities=22%  Similarity=0.321  Sum_probs=91.6

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      +||...+.+ ++++|||+++++|+ |+.|++||.+++-++..|..|...|+.+.|+..+.       .+++.+.||+++.
T Consensus       347 QgH~~~i~~-l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-------~llssSLDGtVRA  418 (893)
T KOG0291|consen  347 QGHSDRITS-LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-------VLLSSSLDGTVRA  418 (893)
T ss_pred             cccccceee-EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-------EEEEeecCCeEEe
Confidence            679999998 99999999999999 89999999999999999999999999999999995       6679999999999


Q ss_pred             EeCCCCceEEEEecCC--CEEEEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDVKF--PIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~  111 (112)
                      ||+..++..+++..+.  ...+++..|.|..+
T Consensus       419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV  450 (893)
T KOG0291|consen  419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELV  450 (893)
T ss_pred             eeecccceeeeecCCCceeeeEEEEcCCCCEE
Confidence            9999999999998877  45677777878765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.79  E-value=2.4e-18  Score=102.48  Aligned_cols=100  Identities=17%  Similarity=0.238  Sum_probs=83.9

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCce--eeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      |.+|+..|.. +.|||.. ..|++++ |++|++||++.+..  ....+.|.+.|+.+.|+....       ++++|+.||
T Consensus       253 f~gH~~SVED-LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-------lLasG~DdG  324 (440)
T KOG0302|consen  253 FTGHTKSVED-LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-------LLASGGDDG  324 (440)
T ss_pred             ccccccchhh-hccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-------eeeecCCCc
Confidence            5679999998 9999976 5667777 99999999988622  223377899999999998874       788999999


Q ss_pred             cEEEEeCCC---CceEEEEecCC-CEEEEEEcCCCc
Q 033738           78 TIKYWDFST---PELLKTIDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        78 ~i~~~~~~~---~~~~~~~~~~~-~v~~~~~~~~~~  109 (112)
                      .+++||++.   +.++..++.|. +|+++.|+|...
T Consensus       325 t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~  360 (440)
T KOG0302|consen  325 TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED  360 (440)
T ss_pred             eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC
Confidence            999999875   67888999887 999999998654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.79  E-value=9.9e-18  Score=96.23  Aligned_cols=103  Identities=21%  Similarity=0.316  Sum_probs=96.0

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +++||...+.. ++++.+|.+|.+++ |....+|-..+|+.+..+.+|.+.|++++..-+..       .+++++.|.++
T Consensus         5 ~l~GHERplTq-iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~-------~liTGSAD~t~   76 (327)
T KOG0643|consen    5 LLQGHERPLTQ-IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSK-------HLITGSADQTA   76 (327)
T ss_pred             ccccCccccce-EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcc-------eeeecccccee
Confidence            47899999998 99999999999999 99999999888999999999999999999988774       67799999999


Q ss_pred             EEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ++||+++|+++.+++.+.+|..+.|+++|+++
T Consensus        77 kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~  108 (327)
T KOG0643|consen   77 KLWDVETGKQLATWKTNSPVKRVDFSFGGNLI  108 (327)
T ss_pred             EEEEcCCCcEEEEeecCCeeEEEeeccCCcEE
Confidence            99999999999999999999999999999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.78  E-value=1.5e-18  Score=109.99  Aligned_cols=103  Identities=25%  Similarity=0.315  Sum_probs=95.5

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +|.||+..|.+ +.|+|..+.+++++ |++|++|.+++..++..+.+|...|..+.|-.++.       .+++++.||.+
T Consensus       500 vLsGH~RGvw~-V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~-------qliS~~adGli  571 (775)
T KOG0319|consen  500 VLSGHTRGVWC-VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK-------QLISAGADGLI  571 (775)
T ss_pred             EeeCCccceEE-EEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc-------EEEeccCCCcE
Confidence            47899999998 99999999999999 99999999999999999999999999999998884       66699999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ++|+++++.|+.++..|. .|++++-+|.+.++
T Consensus       572 KlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~  604 (775)
T KOG0319|consen  572 KLWNIKTNECEMTLDAHNDRVWALSVSPLLDMF  604 (775)
T ss_pred             EEEeccchhhhhhhhhccceeEEEeecCcccee
Confidence            999999999999999988 99999998887654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.78  E-value=6.8e-19  Score=107.13  Aligned_cols=102  Identities=19%  Similarity=0.221  Sum_probs=93.3

Q ss_pred             ccCCCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCC-CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            2 IRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTST-GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +.||+..|.+ +.|.| .+.+|++++ |+.|++|++-. +++++.+.+|..+|..++|++++.       -+++++.|+.
T Consensus       210 ~~gH~kgvsa-i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~-------~fLS~sfD~~  281 (503)
T KOG0282|consen  210 LSGHTKGVSA-IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT-------SFLSASFDRF  281 (503)
T ss_pred             ccCCccccch-hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-------eeeeeeccee
Confidence            6799999998 99999 788999999 99999999865 788999999999999999999995       6669999999


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +++||.++|+++..+.....++++.|+|++..+
T Consensus       282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~  314 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNI  314 (503)
T ss_pred             eeeeccccceEEEEEecCCCceeeecCCCCCcE
Confidence            999999999999999998899999999998433

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.78  E-value=1e-17  Score=102.01  Aligned_cols=102  Identities=23%  Similarity=0.349  Sum_probs=92.2

Q ss_pred             ccCCCCCcCCCeEEcCCC---------CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEE
Q 033738            2 IRGGRSYVSSPPAFSNDV---------KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW   71 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~---------~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   71 (112)
                      |++|...++. +.|+|+|         ..+++++ |.+|++||+..+.++..|..|+.+|.+++|+|+++       |++
T Consensus       397 l~~Hskei~t-~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~-------ylA  468 (524)
T KOG0273|consen  397 LQAHSKEIYT-IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGR-------YLA  468 (524)
T ss_pred             hhhhccceee-EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCc-------EEE
Confidence            5678888887 9999976         3466776 99999999999999999999999999999999995       899


Q ss_pred             eeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           72 TASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        72 ~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +|+.|+.+.+|+.++++..+.......|..++|+-+|+++
T Consensus       469 sGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl  508 (524)
T KOG0273|consen  469 SGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKL  508 (524)
T ss_pred             ecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEE
Confidence            9999999999999999999998888899999999999765

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.77  E-value=1.7e-18  Score=102.77  Aligned_cols=103  Identities=20%  Similarity=0.325  Sum_probs=94.6

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +++||.+.|.+ +++.|..+++++|+ |+++++||+.+++....+.+|...|..+++|+..+       |+.+++.|+++
T Consensus       146 Vi~gHlgWVr~-vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp-------YlFs~gedk~V  217 (460)
T KOG0285|consen  146 VISGHLGWVRS-VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP-------YLFSAGEDKQV  217 (460)
T ss_pred             hhhhccceEEE-EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc-------eEEEecCCCee
Confidence            47899999998 99999999999999 99999999999998889999999999999999986       88899999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +.||++..+.++...+|. .|++++.+|.-..|
T Consensus       218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl  250 (460)
T KOG0285|consen  218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVL  250 (460)
T ss_pred             EEEechhhhhHHHhccccceeEEEeccccceeE
Confidence            999999999988888876 89999999876554

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=2.3e-18  Score=109.95  Aligned_cols=101  Identities=20%  Similarity=0.317  Sum_probs=89.1

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      ++||.+.|.+ +.||.++ +|++++ |.+|++|++....+++.|. |...|+|++|+|..+      .|+++|+-|+.+|
T Consensus       365 f~GHt~DILD-lSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD------ryFiSGSLD~KvR  435 (712)
T KOG0283|consen  365 FKGHTADILD-LSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD------RYFISGSLDGKVR  435 (712)
T ss_pred             hhccchhhee-cccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC------CcEeecccccceE
Confidence            6899999999 9998754 666777 9999999999888888876 889999999999765      4888999999999


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ||++...+.+.....+.-|++++|.|+|++.
T Consensus       436 iWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~a  466 (712)
T KOG0283|consen  436 LWSISDKKVVDWNDLRDLITAVCYSPDGKGA  466 (712)
T ss_pred             EeecCcCeeEeehhhhhhheeEEeccCCceE
Confidence            9999988888777777899999999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=5.5e-18  Score=100.46  Aligned_cols=109  Identities=24%  Similarity=0.270  Sum_probs=94.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCcccee----E-----EEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKIL----S-----YCW   71 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~-----~~~   71 (112)
                      +.+|.+.|.. ++.+.||..+++++ |.++++|-..++++...+..|+.+|.+++|.|... ..-+.    +     ++.
T Consensus       231 ~~~h~ewvr~-v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~-~~~i~~at~~~~~~~~l~  308 (406)
T KOG0295|consen  231 FPGHSEWVRM-VRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS-YPSISEATGSTNGGQVLG  308 (406)
T ss_pred             ccCchHhEEE-EEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccccc-CcchhhccCCCCCccEEE
Confidence            6788888887 99999999999999 99999999999988889999999999999988542 00000    0     667


Q ss_pred             eeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           72 TASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        72 ~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      +++.|++|++||+.+|.++.++..|. +|..++|+|.|++|+
T Consensus       309 s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~  350 (406)
T KOG0295|consen  309 SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL  350 (406)
T ss_pred             eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEE
Confidence            88999999999999999999999988 999999999999985

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.6e-17  Score=94.56  Aligned_cols=103  Identities=25%  Similarity=0.328  Sum_probs=89.9

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC---ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG---LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      +|+||.+.|.+ ++|+++|++|++++ |.+|.+|.+...   .+...+.+|...|..+.|+|...       ++++++.|
T Consensus       100 ~lEGHEnEVK~-Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-------lL~S~SYD  171 (312)
T KOG0645|consen  100 TLEGHENEVKC-VAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-------LLFSCSYD  171 (312)
T ss_pred             eeeccccceeE-EEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-------eeEEeccC
Confidence            37899999998 99999999999999 999999998743   45678889999999999999885       78899999


Q ss_pred             CcEEEEeCC---CCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           77 ETIKYWDFS---TPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        77 ~~i~~~~~~---~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .+|++|+..   +-.+.+++..+. .|++++|++.|..+
T Consensus       172 nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl  210 (312)
T KOG0645|consen  172 NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRL  210 (312)
T ss_pred             CeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceE
Confidence            999999766   236788888887 99999999998654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=8.1e-18  Score=95.27  Aligned_cols=103  Identities=16%  Similarity=0.273  Sum_probs=93.9

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +|..++++|.. ++++-||++.++++ |.++++|+...+..++.+.+|..+|..++.+.+..       -+++++.|..+
T Consensus        12 ~l~~~qgaV~a-vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dns-------kf~s~GgDk~v   83 (307)
T KOG0316|consen   12 ILDCAQGAVRA-VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNS-------KFASCGGDKAV   83 (307)
T ss_pred             eecccccceEE-EEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccc-------ccccCCCCceE
Confidence            36778999998 99999999998887 99999999999999999999999999999988883       66799999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .+||+.+|+..+.+..|. .|+.++|+.+...+
T Consensus        84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv  116 (307)
T KOG0316|consen   84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVV  116 (307)
T ss_pred             EEEEcccCeeeeecccccceeeEEEecCcceEE
Confidence            999999999999999988 99999999887655

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.76  E-value=2.3e-17  Score=93.98  Aligned_cols=96  Identities=24%  Similarity=0.276  Sum_probs=84.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      ++.|.+++.. +.+|||+++|++++ |.++++|+.+.. +....+++|+..++.++||.++.       |+++++.|+..
T Consensus       211 ~~ah~~~il~-C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~-------YlvTassd~~~  282 (311)
T KOG0315|consen  211 FQAHNGHILR-CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGE-------YLVTASSDHTA  282 (311)
T ss_pred             eecccceEEE-EEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCcc-------EEEecCCCCce
Confidence            5779999997 99999999999998 999999999876 44567788999999999999995       89999999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEc
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRG  105 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~  105 (112)
                      ++|+++.++.+.....|. ...+++.+
T Consensus       283 rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  283 RLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             eecccccCceeeecCCcccccEEEEee
Confidence            999999999999988876 66666554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.76  E-value=3.3e-17  Score=101.09  Aligned_cols=85  Identities=31%  Similarity=0.451  Sum_probs=74.5

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc---ccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE---GHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      +..|...|.+ ++++|||.++++.+ |+.+.+||-.+++.+..+.   .|.+.|.+++|+||+.       .+++++.|.
T Consensus       186 ~r~HskFV~~-VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-------~~~T~SaDk  257 (603)
T KOG0318|consen  186 FREHSKFVNC-VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-------QFLTVSADK  257 (603)
T ss_pred             ccccccceee-EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-------eEEEecCCc
Confidence            3568889998 99999999999998 9999999999999888887   7999999999999994       667999999


Q ss_pred             cEEEEeCCCCceEEEEe
Q 033738           78 TIKYWDFSTPELLKTID   94 (112)
Q Consensus        78 ~i~~~~~~~~~~~~~~~   94 (112)
                      ++++||+.+.++++++.
T Consensus       258 t~KIWdVs~~slv~t~~  274 (603)
T KOG0318|consen  258 TIKIWDVSTNSLVSTWP  274 (603)
T ss_pred             eEEEEEeeccceEEEee
Confidence            99999988776655544

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.75  E-value=1.2e-17  Score=96.96  Aligned_cols=103  Identities=24%  Similarity=0.318  Sum_probs=88.9

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +++|.++|.. +.|.+|++.+++++ |.+++.||.++|+.++.++.|..-|+.+.-+.-+.      -.+.+++.|++++
T Consensus        86 lkgHsgAVM~-l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~------~lv~SgsdD~t~k  158 (338)
T KOG0265|consen   86 LKGHSGAVME-LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGP------QLVCSGSDDGTLK  158 (338)
T ss_pred             eccccceeEe-eeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCC------eEEEecCCCceEE
Confidence            6899999999 99999999999998 99999999999999999999999888887444443      2556899999999


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +||++++.+++++.....++++.|..++..+
T Consensus       159 l~D~R~k~~~~t~~~kyqltAv~f~d~s~qv  189 (338)
T KOG0265|consen  159 LWDIRKKEAIKTFENKYQLTAVGFKDTSDQV  189 (338)
T ss_pred             EEeecccchhhccccceeEEEEEecccccce
Confidence            9999999999888777788899998777544

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=6.2e-17  Score=93.01  Aligned_cols=102  Identities=22%  Similarity=0.286  Sum_probs=88.3

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC--CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST--GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      .+|+..|.. ++|+|.|++|++++ |.++.+|.-..  .+++..+.+|+.+|.+++|+++|.       +++++++|..+
T Consensus        58 ~~hkrsVRs-vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-------~LATCSRDKSV  129 (312)
T KOG0645|consen   58 DGHKRSVRS-VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-------YLATCSRDKSV  129 (312)
T ss_pred             ccchheeee-eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-------EEEEeeCCCeE
Confidence            368899997 99999999999999 99999997654  367788999999999999999996       99999999999


Q ss_pred             EEEeCCCC---ceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTP---ELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~---~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      -+|....+   ++...+..|. .|..+.|+|....||
T Consensus       130 WiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~  166 (312)
T KOG0645|consen  130 WIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF  166 (312)
T ss_pred             EEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE
Confidence            99988744   5777787777 899999999766653

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.75  E-value=2.3e-17  Score=98.08  Aligned_cols=100  Identities=22%  Similarity=0.328  Sum_probs=90.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.||...|.+ ++.+|.-..|++++ |..+++||+++...+..+.+|..+|..+.+.|..+       .+++++.|++|+
T Consensus       231 YhGHlS~V~~-L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-------qvit~S~D~tvr  302 (460)
T KOG0285|consen  231 YHGHLSGVYC-LDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-------QVITGSHDSTVR  302 (460)
T ss_pred             hccccceeEE-EeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC-------ceEEecCCceEE
Confidence            4689999998 99999999999999 99999999999999999999999999999988775       566999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCc
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~  109 (112)
                      +||++.|+...++..|. .+.+++.+|...
T Consensus       303 lWDl~agkt~~tlt~hkksvral~lhP~e~  332 (460)
T KOG0285|consen  303 LWDLRAGKTMITLTHHKKSVRALCLHPKEN  332 (460)
T ss_pred             EeeeccCceeEeeecccceeeEEecCCchh
Confidence            99999999988888877 899999998654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=5.9e-17  Score=96.16  Aligned_cols=102  Identities=25%  Similarity=0.338  Sum_probs=88.3

Q ss_pred             ccCCCCCcCCCeEEcCCC---------------CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccc
Q 033738            2 IRGGRSYVSSPPAFSNDV---------------KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATK   65 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~---------------~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   65 (112)
                      +.+|.-.|.+ ++|.|..               +.+.+++ |++|++||++++.++..+.+|...|..++|+|.|.    
T Consensus       273 lR~hEh~vEc-i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk----  347 (406)
T KOG0295|consen  273 LREHEHPVEC-IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK----  347 (406)
T ss_pred             hhccccceEE-EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCe----
Confidence            4567767776 7776532               4778888 99999999999999999999999999999999996    


Q ss_pred             eeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           66 ILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        66 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                         |++++..|+++++||+++++|..++..|. -+.++.|+.+..++
T Consensus       348 ---yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V  391 (406)
T KOG0295|consen  348 ---YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV  391 (406)
T ss_pred             ---EEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence               88899999999999999999999998877 89999998776554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.9e-17  Score=96.32  Aligned_cols=93  Identities=24%  Similarity=0.228  Sum_probs=85.4

Q ss_pred             cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738            9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP   87 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~   87 (112)
                      ..+ +.|++-|.+|+.|. ||.+.+||+.+....+.+..|..+|++++||++|+       .+++++.|..+.+||+..|
T Consensus        26 a~~-~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-------~LltsS~D~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AEC-CQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-------KLLTSSRDWSIKLWDLLKG   97 (405)
T ss_pred             cce-EEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-------EeeeecCCceeEEEeccCC
Confidence            455 89999999999998 99999999999887788999999999999999995       5669999999999999999


Q ss_pred             ceEEEEecCCCEEEEEEcCCCc
Q 033738           88 ELLKTIDVKFPIFSMVRGKKGF  109 (112)
Q Consensus        88 ~~~~~~~~~~~v~~~~~~~~~~  109 (112)
                      .++..+...++|+...|+|...
T Consensus        98 s~l~rirf~spv~~~q~hp~k~  119 (405)
T KOG1273|consen   98 SPLKRIRFDSPVWGAQWHPRKR  119 (405)
T ss_pred             CceeEEEccCccceeeeccccC
Confidence            9999999999999999998654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.74  E-value=4.3e-17  Score=98.65  Aligned_cols=95  Identities=24%  Similarity=0.335  Sum_probs=85.3

Q ss_pred             cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738            9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP   87 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~   87 (112)
                      +.+ ..|+|||..+.+|. |+.+++||+..+.....|.+|.++|..++|+.+|.       |+++++.|+.+++||++.-
T Consensus       350 ~ts-~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY-------~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  350 YTS-AAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY-------WLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             eEE-eeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCce-------EEEEEecCCeEEEEEehhh
Confidence            444 89999999999999 99999999999888899999999999999999994       7889999999999999988


Q ss_pred             ceEEEEecCC--CEEEEEEcCCCcEe
Q 033738           88 ELLKTIDVKF--PIFSMVRGKKGFAV  111 (112)
Q Consensus        88 ~~~~~~~~~~--~v~~~~~~~~~~~~  111 (112)
                      +...++..+.  .+.++.|.+.|.++
T Consensus       422 ~n~kt~~l~~~~~v~s~~fD~SGt~L  447 (506)
T KOG0289|consen  422 KNFKTIQLDEKKEVNSLSFDQSGTYL  447 (506)
T ss_pred             cccceeeccccccceeEEEcCCCCeE
Confidence            7777776655  69999999999876

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=1.6e-17  Score=100.13  Aligned_cols=103  Identities=23%  Similarity=0.354  Sum_probs=89.2

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC---ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG---LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      +|+.|++.|.- +.||++|++||+++ |.+.-+|++..-   +....+.+|..+|..+.||||.+       ++++|+.+
T Consensus       219 il~~htdEVWf-l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr-------yLlaCg~~  290 (519)
T KOG0293|consen  219 ILQDHTDEVWF-LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR-------YLLACGFD  290 (519)
T ss_pred             hHhhCCCcEEE-EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC-------eEEecCch
Confidence            46789999998 99999999999999 998888886432   34577889999999999999996       88899999


Q ss_pred             CcEEEEeCCCCceEEEEecC--CCEEEEEEcCCCcEe
Q 033738           77 ETIKYWDFSTPELLKTIDVK--FPIFSMVRGKKGFAV  111 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~  111 (112)
                      ..+.+||..+|.+...++..  ..+.+.+|.|||..+
T Consensus       291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~  327 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRF  327 (519)
T ss_pred             HheeeccCCcchhhhhcccCcCCCcceeEEccCCcee
Confidence            99999999999998887765  389999999999754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=1.7e-17  Score=106.03  Aligned_cols=97  Identities=16%  Similarity=0.232  Sum_probs=85.3

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC--------------------------------C------------
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST--------------------------------G------------   38 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~--------------------------------~------------   38 (112)
                      +|.+.|.+ +.||+||++||+|+ |+.|++|.+..                                .            
T Consensus       265 ah~gaIw~-mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWA-MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEE-EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            79999998 99999999999999 99999997643                                0            


Q ss_pred             ----------------ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEE
Q 033738           39 ----------------LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSM  102 (112)
Q Consensus        39 ----------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~  102 (112)
                                      +++..+.+|.+.|..+.|+.++        ++++++-|.++|+|++....|+..+.+..-|+|+
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--------fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcV  415 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--------FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCV  415 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCC--------eeEeccccccEEeecCCCcceeeEEecCCeeEEE
Confidence                            1345567899999999999988        7789999999999999999999999988899999


Q ss_pred             EEcCCCc
Q 033738          103 VRGKKGF  109 (112)
Q Consensus       103 ~~~~~~~  109 (112)
                      +|+|-..
T Consensus       416 aFnPvDD  422 (712)
T KOG0283|consen  416 AFNPVDD  422 (712)
T ss_pred             EecccCC
Confidence            9999543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.73  E-value=9.5e-17  Score=102.07  Aligned_cols=100  Identities=22%  Similarity=0.212  Sum_probs=92.1

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      .|...|++ ++++|+..++++|+ |.+.++|+++.......+.+|...++++.|+|...       .+++++.|.++++|
T Consensus       461 aHdKdIN~-Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq-------~laT~SgD~TvKIW  532 (775)
T KOG0319|consen  461 AHDKDINC-VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ-------LLATCSGDKTVKIW  532 (775)
T ss_pred             hhcccccc-eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc-------eeEeccCCceEEEE
Confidence            47888998 99999999999999 99999999998888899999999999999999875       67899999999999


Q ss_pred             eCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           83 DFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .+.+..|+.++.+|. .|....|-.+|+.+
T Consensus       533 ~is~fSClkT~eGH~~aVlra~F~~~~~ql  562 (775)
T KOG0319|consen  533 SISTFSCLKTFEGHTSAVLRASFIRNGKQL  562 (775)
T ss_pred             EeccceeeeeecCccceeEeeeeeeCCcEE
Confidence            999999999999887 89989998887755

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.73  E-value=7e-18  Score=101.28  Aligned_cols=103  Identities=21%  Similarity=0.242  Sum_probs=93.8

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +|.||...|.+ ++|+|.-.++++++ |..|++||.+++.++..+..|...|..+.|+++++       ++++++.|..+
T Consensus       217 vL~GHgwdVks-vdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N-------~Llt~skD~~~  288 (464)
T KOG0284|consen  217 VLRGHGWDVKS-VDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN-------WLLTGSKDQSC  288 (464)
T ss_pred             eeccCCCCcce-eccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC-------eeEEccCCceE
Confidence            36789999998 99999999999999 89999999999999999999999999999999995       88899999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +++|+++.+.++.++.|. .+.++.|+|-.+-|
T Consensus       289 kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l  321 (464)
T KOG0284|consen  289 KVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL  321 (464)
T ss_pred             EEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence            999999888888888777 99999999865544

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.72  E-value=1.2e-16  Score=91.13  Aligned_cols=101  Identities=20%  Similarity=0.277  Sum_probs=85.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|+..|.. +.|..+|+.+++|+ ||++++||++...+.+.+. +..+|+++..+|+..       -++++..+|.|+
T Consensus        79 ~e~h~kNVta-VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt-------eLis~dqsg~ir  149 (311)
T KOG0315|consen   79 FEGHTKNVTA-VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT-------ELISGDQSGNIR  149 (311)
T ss_pred             EeccCCceEE-EEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc-------eEEeecCCCcEE
Confidence            6789999997 99999999999999 9999999999866555555 569999999999883       556999999999


Q ss_pred             EEeCCCCceEEEEecCC--CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF--PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~  111 (112)
                      +||+.+..+...+..+.  +++++...|||.++
T Consensus       150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml  182 (311)
T KOG0315|consen  150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSML  182 (311)
T ss_pred             EEEccCCccccccCCCCCcceeeEEEcCCCcEE
Confidence            99999877765554333  89999999999876

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.2e-17  Score=105.00  Aligned_cols=105  Identities=22%  Similarity=0.279  Sum_probs=92.5

Q ss_pred             CccCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            1 MIRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +++||..+|.+ ++|.|. .+.+++++ |++|++|.+.+..+...+.+|+..|+|+.+-+.++  +   -++++++.|..
T Consensus       135 tfeGH~HyVMq-v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd--k---pylIsgaDD~t  208 (794)
T KOG0276|consen  135 TFEGHEHYVMQ-VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD--K---PYLISGADDLT  208 (794)
T ss_pred             EEcCcceEEEE-EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC--c---ceEEecCCCce
Confidence            37899999998 999995 58999999 99999999988888889999999999999987652  0   16779999999


Q ss_pred             EEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +++||++++.|++++.+|. .|..+.|+|.-..+
T Consensus       209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii  242 (794)
T KOG0276|consen  209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII  242 (794)
T ss_pred             EEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence            9999999999999999987 89999999876544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.71  E-value=7.2e-16  Score=90.03  Aligned_cols=102  Identities=30%  Similarity=0.441  Sum_probs=89.1

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +++|.+.|.+ ++|+|+++.+++++ ++.+++|+..+++....+..+...+..+.|+|++.       ++++++.++.++
T Consensus         5 ~~~h~~~i~~-~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~~~~i~   76 (289)
T cd00200           5 LKGHTGGVTC-VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT-------YLASGSSDKTIR   76 (289)
T ss_pred             hcccCCCEEE-EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCC-------EEEEEcCCCeEE
Confidence            6789999998 99999999999998 89999999988877777778888888999999984       677899999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||+.+++.+..+..+. .+.++.|+|+++++
T Consensus        77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  108 (289)
T cd00200          77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRIL  108 (289)
T ss_pred             EEEcCcccceEEEeccCCcEEEEEEcCCCCEE
Confidence            99999887777777666 89999999987654

>PTZ00420 coronin; Provisional

Probab=99.71  E-value=9.3e-16  Score=97.84  Aligned_cols=101  Identities=7%  Similarity=0.040  Sum_probs=80.0

Q ss_pred             ccCCCCCcCCCeEEcCCCCEE-EEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRL-LVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l-~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.+|...|.+ ++|+|++..+ ++++ |+.|++||+.+++....+. +...+.+++|+|++.       ++++++.|+.+
T Consensus       121 L~gH~~~V~s-Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~-------lLat~s~D~~I  191 (568)
T PTZ00420        121 LKGHKKKISI-IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN-------LLSGTCVGKHM  191 (568)
T ss_pred             eecCCCcEEE-EEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC-------EEEEEecCCEE
Confidence            4678899998 9999998754 6777 9999999999887666554 557799999999995       67788999999


Q ss_pred             EEEeCCCCceEEEEecCC-CE-----EEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKF-PI-----FSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v-----~~~~~~~~~~~~  111 (112)
                      ++||+++++.+..+..|. .+     ....|++++.++
T Consensus       192 rIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~I  229 (568)
T PTZ00420        192 HIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYI  229 (568)
T ss_pred             EEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEE
Confidence            999999999888887765 32     222345676654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.71  E-value=1.1e-16  Score=104.83  Aligned_cols=103  Identities=26%  Similarity=0.286  Sum_probs=90.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |.+|.+.|.+ ++|+|++.+|++++ |++|.+|+..+.+.+..+.+|.+.|..+.|.|.|.       |+++-+.|++++
T Consensus       125 l~~H~~DV~D-v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk-------y~ASqsdDrtik  196 (942)
T KOG0973|consen  125 LRGHDSDVLD-VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK-------YFASQSDDRTLK  196 (942)
T ss_pred             EecCCCccce-eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccC-------eeeeecCCceEE
Confidence            6789999999 99999999999999 99999999999988999999999999999999996       999999999999


Q ss_pred             EEeCCCCceEEEEecC-------CCEEEEEEcCCCcEeC
Q 033738           81 YWDFSTPELLKTIDVK-------FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~  112 (112)
                      +|+..+-.....+..+       .-...+.|+|||++|.
T Consensus       197 vwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  197 VWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             EEEcccceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence            9997664444444322       2578899999999873

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.71  E-value=1.9e-16  Score=90.78  Aligned_cols=102  Identities=18%  Similarity=0.129  Sum_probs=93.5

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +++|...-.| +.|+|+|+++++|+ |..+.+||++.--+.+.+..+.-+|..+.|+.+++       ++++++.|..|-
T Consensus       185 i~AH~snCic-I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~-------~lASaSEDh~ID  256 (313)
T KOG1407|consen  185 IKAHPSNCIC-IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR-------MLASASEDHFID  256 (313)
T ss_pred             cccCCcceEE-EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc-------eeeccCccceEE
Confidence            5788877777 99999999999999 99999999988878888998999999999999996       888999999999


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +-+.++|..+..++...+...++|+|....|
T Consensus       257 IA~vetGd~~~eI~~~~~t~tVAWHPk~~LL  287 (313)
T KOG1407|consen  257 IAEVETGDRVWEIPCEGPTFTVAWHPKRPLL  287 (313)
T ss_pred             eEecccCCeEEEeeccCCceeEEecCCCcee
Confidence            9999999999999988899999999987654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.71  E-value=1.4e-17  Score=98.29  Aligned_cols=99  Identities=18%  Similarity=0.226  Sum_probs=83.3

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee--------eccccCCceEEEEEecCCCCccceeEEEEeeec
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS--------SLEGHTAPVTTVIVVPASTPATKILSYCWTASL   75 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   75 (112)
                      ....+.| ..|+|||++|++|+ ||.|.+|+..+|+.-+        ++--+...|.|+.|+.|..       .+++|+-
T Consensus       212 ~KSh~Ec-A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-------MlAsGsq  283 (508)
T KOG0275|consen  212 QKSHVEC-ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-------MLASGSQ  283 (508)
T ss_pred             cccchhh-eeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-------HhhccCc
Confidence            3566777 99999999999999 9999999998876432        2233677899999999984       6779999


Q ss_pred             CCcEEEEeCCCCceEEEEe-cCC-CEEEEEEcCCCcEe
Q 033738           76 DETIKYWDFSTPELLKTID-VKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        76 d~~i~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~~~~  111 (112)
                      ||.|++|.+++|.|++.+. .|. .|.++.|+.|+..+
T Consensus       284 DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sqi  321 (508)
T KOG0275|consen  284 DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQI  321 (508)
T ss_pred             CCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchh
Confidence            9999999999999999987 455 99999999988654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.3e-16  Score=99.25  Aligned_cols=103  Identities=23%  Similarity=0.295  Sum_probs=91.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee--cCCc
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS--LDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~d~~   78 (112)
                      +.+|...|-. ++|++|++.+++|+ |+.+.+||....+++..+..|.+.|..++|+|-..      .++|+|+  .|+.
T Consensus       297 ~~~H~qeVCg-Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~------~lLAsGGGs~D~~  369 (484)
T KOG0305|consen  297 LQGHRQEVCG-LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS------GLLATGGGSADRC  369 (484)
T ss_pred             hhcccceeee-eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc------CceEEcCCCcccE
Confidence            5679989987 99999999999999 99999999977778889999999999999999765      3556664  6899


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      |++||..+|..+..+.....|.++.|++..+.+
T Consensus       370 i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi  402 (484)
T KOG0305|consen  370 IKFWNTNTGARIDSVDTGSQVCSLIWSKKYKEL  402 (484)
T ss_pred             EEEEEcCCCcEecccccCCceeeEEEcCCCCEE
Confidence            999999999999999999999999999988654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.70  E-value=3e-16  Score=100.35  Aligned_cols=102  Identities=22%  Similarity=0.378  Sum_probs=78.8

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC--------------------------------------------
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS--------------------------------------------   36 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~--------------------------------------------   36 (112)
                      |..|+..|.. +.|+..|+.+++.+ ||+|+.||+.                                            
T Consensus       388 FteHts~Vt~-v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q  466 (893)
T KOG0291|consen  388 FTEHTSGVTA-VQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ  466 (893)
T ss_pred             eccCCCceEE-EEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence            4556666665 66666666666666 6666666554                                            


Q ss_pred             CCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC-ceEEEEecCCCEEEEEEcCCCcEe
Q 033738           37 TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP-ELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        37 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +|+.+..+.+|+++|.+++|+|.+.       .++++++|.+|++||+-.. ..+.++.....+..++|.|+|+.+
T Consensus       467 TGqllDiLsGHEgPVs~l~f~~~~~-------~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~el  535 (893)
T KOG0291|consen  467 TGQLLDILSGHEGPVSGLSFSPDGS-------LLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKEL  535 (893)
T ss_pred             cCeeeehhcCCCCcceeeEEccccC-------eEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeE
Confidence            5556677789999999999999995       7889999999999998643 355667767799999999999865

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.70  E-value=1.7e-16  Score=95.93  Aligned_cols=103  Identities=20%  Similarity=0.241  Sum_probs=86.0

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCC--CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTST--GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      +.+|...|.. ++|++-. .++++++ |+.+.+||+++  .+.......|.+++.|++|+|-+.      .++++++.|+
T Consensus       223 ~~~h~~~VeD-V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~------~ilAT~S~D~  295 (422)
T KOG0264|consen  223 FSGHEDVVED-VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE------FILATGSADK  295 (422)
T ss_pred             eecCCcceeh-hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC------ceEEeccCCC
Confidence            6789999998 9999965 6667777 89999999994  455567778999999999999875      3678999999


Q ss_pred             cEEEEeCCC-CceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           78 TIKYWDFST-PELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        78 ~i~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ++++||+++ ..++.++..|. .|..+.|+|..+.+
T Consensus       296 tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etv  331 (422)
T KOG0264|consen  296 TVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETV  331 (422)
T ss_pred             cEEEeechhcccCceeccCCCcceEEEEeCCCCCce
Confidence            999999997 35677777777 99999999987654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.70  E-value=1e-16  Score=102.38  Aligned_cols=103  Identities=22%  Similarity=0.301  Sum_probs=95.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |.||.-+|.+ +.+|||++.++||+ |..|++|-++-|.+-+.+..|+..|.++.|-|+..       .+.+++.|+.++
T Consensus       546 LYGHkLPV~s-mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~-------~FFt~gKD~kvK  617 (888)
T KOG0306|consen  546 LYGHKLPVLS-MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH-------LFFTCGKDGKVK  617 (888)
T ss_pred             ecccccceeE-EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce-------eEEEecCcceEE
Confidence            6899999998 99999999999999 99999999999999999999999999999999874       567999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      -||-.+-++++++..|. .+++++..|+|.+++
T Consensus       618 qWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vv  650 (888)
T KOG0306|consen  618 QWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVV  650 (888)
T ss_pred             eechhhhhhheeeccchheeeeeEEcCCCCeEE
Confidence            99988888999998877 999999999998763

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.70  E-value=3.5e-16  Score=90.99  Aligned_cols=94  Identities=14%  Similarity=0.191  Sum_probs=81.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC-CCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS-TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.+|.+.|.. +.|+|+|..|++++ |..|.+|+.. .-+....+++|.+.|..+.|.++++       .+++++.|.++
T Consensus        43 l~gh~geI~~-~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s-------~i~S~gtDk~v  114 (338)
T KOG0265|consen   43 LPGHKGEIYT-IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGS-------HILSCGTDKTV  114 (338)
T ss_pred             cCCCcceEEE-EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCC-------EEEEecCCceE
Confidence            5789999998 99999999999999 9999999964 3445667789999999999999994       67799999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEE
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMV  103 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~  103 (112)
                      +.||.++|++++.++.|. -++++.
T Consensus       115 ~~wD~~tG~~~rk~k~h~~~vNs~~  139 (338)
T KOG0265|consen  115 RGWDAETGKRIRKHKGHTSFVNSLD  139 (338)
T ss_pred             EEEecccceeeehhccccceeeecC
Confidence            999999999999998887 444443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.70  E-value=3.2e-17  Score=99.99  Aligned_cols=102  Identities=20%  Similarity=0.324  Sum_probs=88.9

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.||...|.+ ++|+++|..+++++ |+.+++||+++|+++..+.. ...+.|+.++|++.      ..+++|+.|+.|+
T Consensus       254 f~gH~k~Vrd-~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~------n~fl~G~sd~ki~  325 (503)
T KOG0282|consen  254 FKGHRKPVRD-ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQ------NIFLVGGSDKKIR  325 (503)
T ss_pred             hhcchhhhhh-hhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCC------cEEEEecCCCcEE
Confidence            6789999998 99999999999999 99999999999998887763 45568999999984      2667999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .||+++++.++....|. .+..+.|-++|+.+
T Consensus       326 ~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF  357 (503)
T KOG0282|consen  326 QWDIRSGKVVQEYDRHLGAILDITFVDEGRRF  357 (503)
T ss_pred             EEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence            99999999888877776 88889998888764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.69  E-value=1.2e-15  Score=90.64  Aligned_cols=102  Identities=15%  Similarity=0.103  Sum_probs=91.8

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |+.|++.|++ ++.+|+.+++++|+ |..-++|++.++.....+.+|...|.++.|+.++.       ++++++-+|.++
T Consensus        60 F~~H~~svFa-vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgt-------lLATGdmsG~v~  131 (399)
T KOG0296|consen   60 FDKHTDSVFA-VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGT-------LLATGDMSGKVL  131 (399)
T ss_pred             hhhcCCceEE-EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCce-------EEEecCCCccEE
Confidence            6789999998 99999889999998 89999999999998899999999999999999994       899999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +|+..+|.....+.+.. .+.-+.|+|.+..+
T Consensus       132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~il  163 (399)
T KOG0296|consen  132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHIL  163 (399)
T ss_pred             EEEcccCceEEEeecccCceEEEEecccccEE
Confidence            99999998887776444 77888999977765

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.67  E-value=1.4e-15  Score=92.12  Aligned_cols=103  Identities=18%  Similarity=0.186  Sum_probs=82.5

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      .++|.+.+.+ ++|+|-+ ..||+++ |++|.+||++.. +++..+.+|...|.++.|+|...      .++++++.|+.
T Consensus       268 ~~ah~~~vn~-~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e------tvLASSg~D~r  340 (422)
T KOG0264|consen  268 VKAHSAEVNC-VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE------TVLASSGTDRR  340 (422)
T ss_pred             ccccCCceeE-EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC------ceeEecccCCc
Confidence            3679999998 9999965 6778888 999999999874 56788999999999999999876      47789999999


Q ss_pred             EEEEeCCCC--------------ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTP--------------ELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~--------------~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +.+||+..-              +.+..-.+|. .|..+.|+|+...+
T Consensus       341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~  388 (422)
T KOG0264|consen  341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWT  388 (422)
T ss_pred             EEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeE
Confidence            999998631              1223334454 78889999887643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.67  E-value=2.9e-16  Score=92.19  Aligned_cols=102  Identities=24%  Similarity=0.290  Sum_probs=83.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC------------C------ceeeeccccCCceEEEEEecCCCC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST------------G------LQISSLEGHTAPVTTVIVVPASTP   62 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~   62 (112)
                      ++.|.....+ .+|+|||.++++|+ |.+|+++|++.            +      ..++.+-.|..+|+++.|+|... 
T Consensus       108 lt~HK~~cR~-aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~-  185 (430)
T KOG0640|consen  108 LTSHKSPCRA-AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET-  185 (430)
T ss_pred             Eeecccceee-eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence            4568888887 99999999999999 99999999861            0      13566777889999999999984 


Q ss_pred             ccceeEEEEeeecCCcEEEEeCCCCc---eEEEEecCCCEEEEEEcCCCcEe
Q 033738           63 ATKILSYCWTASLDETIKYWDFSTPE---LLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        63 ~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                            ++++++.|++++++|+.+..   ..+.+....+|.++.|+|.|+++
T Consensus       186 ------ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefl  231 (430)
T KOG0640|consen  186 ------ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFL  231 (430)
T ss_pred             ------eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceE
Confidence                  78899999999999998643   33344444599999999999976

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.67  E-value=2.5e-15  Score=89.40  Aligned_cols=103  Identities=20%  Similarity=0.234  Sum_probs=89.5

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.||.+.|.+ +.|+.||.+|++|. +|.|++|...++.....+...-..+.=+.|+|.++       +++.|+.||.+.
T Consensus       102 ltgHKDSVt~-~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~-------illAG~~DGsvW  173 (399)
T KOG0296|consen  102 LTGHKDSVTC-CSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-------ILLAGSTDGSVW  173 (399)
T ss_pred             ecCCCCceEE-EEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccccc-------EEEeecCCCcEE
Confidence            5789999998 99999999999999 99999999999877767664555666778999886       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      +|.+.++...+.+.+|. ++++=.|.|+|+.++
T Consensus       174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             EEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence            99999877778888877 999999999998763

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.67  E-value=7.5e-16  Score=95.53  Aligned_cols=92  Identities=17%  Similarity=0.188  Sum_probs=83.3

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      +.+.. .+|+|||++|++.+ ||.++++|..+.+.....+..-+...|++||||++       |+++++.|-.+.+|.+.
T Consensus       291 g~in~-f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK-------yIvtGGEDDLVtVwSf~  362 (636)
T KOG2394|consen  291 GSINE-FAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK-------YIVTGGEDDLVTVWSFE  362 (636)
T ss_pred             ccccc-eeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc-------EEEecCCcceEEEEEec
Confidence            46776 99999999999999 99999999998877777777788899999999996       88999999999999999


Q ss_pred             CCceEEEEecCC-CEEEEEEcC
Q 033738           86 TPELLKTIDVKF-PIFSMVRGK  106 (112)
Q Consensus        86 ~~~~~~~~~~~~-~v~~~~~~~  106 (112)
                      +++.+..-..|. +|..++|.|
T Consensus       363 erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  363 ERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cceEEEeccccccceeeEeecc
Confidence            999988888877 999999985

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.4e-15  Score=99.05  Aligned_cols=102  Identities=15%  Similarity=0.164  Sum_probs=94.6

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |.+|.+.|.. +.|+|.+.++++|+ |-.|++|+..+.+++..+.+|-..|..+.|++.-+       ++++++.|.+|+
T Consensus        47 FdeHdGpVRg-v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyP-------WIlSASDDQTIr  118 (1202)
T KOG0292|consen   47 FDEHDGPVRG-VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYP-------WILSASDDQTIR  118 (1202)
T ss_pred             hhccCCccce-eeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCc-------eEEEccCCCeEE
Confidence            5689999998 99999999999999 79999999999999999999999999999999986       888999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +|+-.+++++..+.+|. -|-|..|+|....+
T Consensus       119 IWNwqsr~~iavltGHnHYVMcAqFhptEDlI  150 (1202)
T KOG0292|consen  119 IWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI  150 (1202)
T ss_pred             EEeccCCceEEEEecCceEEEeeccCCccceE
Confidence            99999999999999998 89999999966544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.66  E-value=8e-15  Score=85.62  Aligned_cols=102  Identities=29%  Similarity=0.416  Sum_probs=86.6

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      ..|...+.+ +.|+|+++.+++++ ++.+++||+..++....+..+...+.++.|+|++.       ++++++.++.+++
T Consensus       174 ~~~~~~i~~-~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~i~i  245 (289)
T cd00200         174 TGHTGEVNS-VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY-------LLASGSEDGTIRV  245 (289)
T ss_pred             ecCccccce-EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCc-------EEEEEcCCCcEEE
Confidence            456678887 99999998888888 89999999998887777777888999999999863       6667777999999


Q ss_pred             EeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           82 WDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      ||+.++.....+..+. .+.++.|+|+++.++
T Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  277 (289)
T cd00200         246 WDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA  277 (289)
T ss_pred             EEcCCceeEEEccccCCcEEEEEECCCCCEEE
Confidence            9999888888877665 899999999987653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.6e-15  Score=86.83  Aligned_cols=100  Identities=14%  Similarity=0.173  Sum_probs=83.4

Q ss_pred             ccCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.||...|.. ..|+|. ++.+++++ |+.+++||++.......+..|..++.++.|+.-.+      ..+++++.|+.|
T Consensus       143 f~gh~~~Iy~-a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~------~vl~Tg~vd~~v  215 (311)
T KOG0277|consen  143 FNGHNSCIYQ-AAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH------NVLATGGVDNLV  215 (311)
T ss_pred             ecCCccEEEE-EecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC------cEEEecCCCceE
Confidence            6789999998 999996 57888888 99999999976444455888999999999998665      467899999999


Q ss_pred             EEEeCCCC-ceEEEEecCC-CEEEEEEcCCC
Q 033738           80 KYWDFSTP-ELLKTIDVKF-PIFSMVRGKKG  108 (112)
Q Consensus        80 ~~~~~~~~-~~~~~~~~~~-~v~~~~~~~~~  108 (112)
                      +.||++.- .++..+..|. .|+.+.|+|..
T Consensus       216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph~  246 (311)
T KOG0277|consen  216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPHH  246 (311)
T ss_pred             EEEehhhccccceeecCCceEEEEEecCcch
Confidence            99999873 5677777777 99999999864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.66  E-value=1.2e-15  Score=91.75  Aligned_cols=103  Identities=20%  Similarity=0.244  Sum_probs=88.3

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCC-------ceeeeccccCCceEEEEEecCCCCccceeEEEEe
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTG-------LQISSLEGHTAPVTTVIVVPASTPATKILSYCWT   72 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   72 (112)
                      +-||++.|.. ++|+|.. +.+++|+ |.+|.+|.+...       +....+.+|...|.-++|+|...      ..+++
T Consensus        77 v~GHt~~vLD-i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~------NVLls  149 (472)
T KOG0303|consen   77 VCGHTAPVLD-IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP------NVLLS  149 (472)
T ss_pred             ccCccccccc-cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch------hhHhh
Confidence            4689999999 9999965 6777888 899999998643       34567789999999999999876      35569


Q ss_pred             eecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           73 ASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        73 ~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ++.|..+.+||+.+|+.+.++.++.-|+++.|+.+|..+
T Consensus       150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l  188 (472)
T KOG0303|consen  150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLL  188 (472)
T ss_pred             ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCcee
Confidence            999999999999999999888866699999999999875

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.66  E-value=3.5e-17  Score=96.64  Aligned_cols=99  Identities=18%  Similarity=0.229  Sum_probs=91.0

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      +...|.| +.|+.|...+++|+ ||.|++|.+.+|.+++.|. .|...|+++.|+.|+.       .+++++.|.++++-
T Consensus       262 md~aVlc-i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-------qiLS~sfD~tvRiH  333 (508)
T KOG0275|consen  262 MDDAVLC-ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-------QILSASFDQTVRIH  333 (508)
T ss_pred             cccceEE-EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-------hhhcccccceEEEe
Confidence            4567888 99999999999999 9999999999999999987 7999999999999993       55699999999999


Q ss_pred             eCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           83 DFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .+++|+++..+++|+ .|+...|.++|..+
T Consensus       334 GlKSGK~LKEfrGHsSyvn~a~ft~dG~~i  363 (508)
T KOG0275|consen  334 GLKSGKCLKEFRGHSSYVNEATFTDDGHHI  363 (508)
T ss_pred             ccccchhHHHhcCccccccceEEcCCCCeE
Confidence            999999999999998 89999999999876

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.66  E-value=1.5e-15  Score=99.59  Aligned_cols=101  Identities=25%  Similarity=0.272  Sum_probs=89.5

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC-------C-----------ceeeeccccCCceEEEEEecCCCCc
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST-------G-----------LQISSLEGHTAPVTTVIVVPASTPA   63 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~~~   63 (112)
                      ..|.+.|.| ++|+|||++||+|+ |..|.+|+-..       +           +....+.+|.+.|..++|+|++.  
T Consensus        66 ~~h~~sv~C-VR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--  142 (942)
T KOG0973|consen   66 DDHDGSVNC-VRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--  142 (942)
T ss_pred             ccccCceeE-EEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--
Confidence            468899998 99999999999999 78899998762       0           24566778999999999999984  


Q ss_pred             cceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           64 TKILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        64 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                           ++++++.|++|.+||..+.+.+.++..|. .|-.+.|.|-|+++
T Consensus       143 -----~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~  186 (942)
T KOG0973|consen  143 -----LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYF  186 (942)
T ss_pred             -----EEEEecccceEEEEccccceeeeeeecccccccceEECCccCee
Confidence                 89999999999999999999999999988 89999999999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.65  E-value=3.4e-15  Score=84.79  Aligned_cols=77  Identities=27%  Similarity=0.428  Sum_probs=69.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.||...|.. ++.+.|...+++++ |..+.+||+++|+..+.+.+|.+.|+.++|+.+.       +.+++++.|..++
T Consensus        55 YsghG~EVlD-~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-------SVv~SgsfD~s~r  126 (307)
T KOG0316|consen   55 YSGHGHEVLD-AALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-------SVVASGSFDSSVR  126 (307)
T ss_pred             ecCCCceeee-ccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc-------eEEEeccccceeE
Confidence            4678888998 89999999999887 9999999999999999999999999999999887       4778999999999


Q ss_pred             EEeCCC
Q 033738           81 YWDFST   86 (112)
Q Consensus        81 ~~~~~~   86 (112)
                      +||.++
T Consensus       127 ~wDCRS  132 (307)
T KOG0316|consen  127 LWDCRS  132 (307)
T ss_pred             EEEccc
Confidence            999764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=8.6e-15  Score=89.60  Aligned_cols=103  Identities=21%  Similarity=0.273  Sum_probs=86.7

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +++|+.++.. ..|+|.+ ..+++|+ |+.+++||+.+......+.+|+..|.+.+|+|..+      -++++|+.||.|
T Consensus       106 ~~ah~apv~~-~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~------hivvtGsYDg~v  178 (487)
T KOG0310|consen  106 LYAHQAPVHV-TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAND------HIVVTGSYDGKV  178 (487)
T ss_pred             HhhccCceeE-EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCC------eEEEecCCCceE
Confidence            5789999997 9999976 5566777 68999999998876557889999999999999864      366799999999


Q ss_pred             EEEeCCCC-ceEEEEecCCCEEEEEEcCCCcEe
Q 033738           80 KYWDFSTP-ELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ++||.+.. ..+..+..+.+|.++.+-|.|..|
T Consensus       179 rl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~i  211 (487)
T KOG0310|consen  179 RLWDTRSLTSRVVELNHGCPVESVLALPSGSLI  211 (487)
T ss_pred             EEEEeccCCceeEEecCCCceeeEEEcCCCCEE
Confidence            99999876 677777777799999999997765

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=4.2e-15  Score=87.14  Aligned_cols=102  Identities=14%  Similarity=0.240  Sum_probs=89.7

Q ss_pred             ccCCCCCcCCCeEEcCCCC--EEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            2 IRGGRSYVSSPPAFSNDVK--RLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~--~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +-.|.+.+++ +.|.++..  .|++|+ ||.|.+|+......+..+++|.+.|+.++++|.+.       +.++.+.|+.
T Consensus        79 ll~Hagsita-L~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-------LALsVg~D~~  150 (362)
T KOG0294|consen   79 LLSHAGSITA-LKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-------LALSVGGDQV  150 (362)
T ss_pred             eeccccceEE-EEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-------eEEEEcCCce
Confidence            4468899998 99998874  888888 89999999999988999999999999999999996       6679999999


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +++||+-.|+....+........+.|+|.|.++
T Consensus       151 lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F  183 (362)
T KOG0294|consen  151 LRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHF  183 (362)
T ss_pred             eeeehhhcCccceeeccCCcceeeEEcCCCCEE
Confidence            999999999888888777766679999999854

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.64  E-value=5.7e-15  Score=95.34  Aligned_cols=101  Identities=20%  Similarity=0.311  Sum_probs=87.8

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc-----------------------------------------e
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-----------------------------------------Q   40 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~-----------------------------------------~   40 (112)
                      +.|.+.|.+ ++...-++.+++++ +|.+++||.....                                         .
T Consensus       490 ~ah~~~V~g-la~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv  568 (910)
T KOG1539|consen  490 PAHKGEVTG-LAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV  568 (910)
T ss_pred             ccccCceeE-EEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence            468888887 88887788888888 8999999986432                                         2


Q ss_pred             eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           41 ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        41 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      .+.+.+|.+.++.++|||+++       ++++++.|++|++||+.++.++-.+..+.++.++.|+|+|.++
T Consensus       569 vR~f~gh~nritd~~FS~Dgr-------WlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~L  632 (910)
T KOG1539|consen  569 VREFWGHGNRITDMTFSPDGR-------WLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFL  632 (910)
T ss_pred             hHHhhccccceeeeEeCCCCc-------EEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEE
Confidence            355667999999999999996       8889999999999999999999999999999999999999986

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=2.9e-15  Score=85.76  Aligned_cols=101  Identities=17%  Similarity=0.291  Sum_probs=84.5

Q ss_pred             ccCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      ++.|...|.. +.|++- ++.+++++ |++|++|+...++.+..+.+|...|...+|+|...      ..+++++.|+.+
T Consensus       100 ~kEH~~EV~S-vdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~------nlfas~Sgd~~l  172 (311)
T KOG0277|consen  100 FKEHKREVYS-VDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP------NLFASASGDGTL  172 (311)
T ss_pred             HHhhhhheEE-eccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCC------CeEEEccCCceE
Confidence            5789999997 999985 56677778 99999999998888999999999999999999875      477899999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcCCCc
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~  109 (112)
                      ++||++.......+..|. .+.++.|+.-..
T Consensus       173 ~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~  203 (311)
T KOG0277|consen  173 RLWDVRSPGKFMSIEAHNSEILCCDWSKYNH  203 (311)
T ss_pred             EEEEecCCCceeEEEeccceeEeecccccCC
Confidence            999998654444477777 888888886443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=4.3e-16  Score=99.18  Aligned_cols=102  Identities=21%  Similarity=0.282  Sum_probs=93.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |++|...|.+ +.|+++..+|++|+ +|+|++||+..++.++.+.+|...+..++|+|-+.       |.++++.|..+.
T Consensus        66 ~~~hespIeS-l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~-------~~a~gStdtd~~  137 (825)
T KOG0267|consen   66 LTGHESPIES-LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE-------FFASGSTDTDLK  137 (825)
T ss_pred             eeccCCccee-eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE-------Eeccccccccce
Confidence            5789999998 99999999999998 89999999999988899999999999999999984       888999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||.+...|...+..|. -+..+.|+|+|+++
T Consensus       138 iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v  169 (825)
T KOG0267|consen  138 IWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWV  169 (825)
T ss_pred             ehhhhccCceeeecCCcceeEEEeecCCCcee
Confidence            99999888999998876 67888999999875

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=1.1e-14  Score=85.02  Aligned_cols=101  Identities=16%  Similarity=0.145  Sum_probs=79.9

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |.||...|.. ++.+|-+..+++++ |++|++||++..++...+.....  ..+++.|.|-       +++.+...+.|+
T Consensus        96 F~GH~~~V~s-L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GL-------ifA~~~~~~~Ik  165 (311)
T KOG1446|consen   96 FPGHKKRVNS-LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGL-------IFALANGSELIK  165 (311)
T ss_pred             cCCCCceEEE-EEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCc-------EEEEecCCCeEE
Confidence            6899999998 99999999999999 99999999998777666653333  4578999993       677777777999


Q ss_pred             EEeCCC--CceEEEEecC----CCEEEEEEcCCCcEeC
Q 033738           81 YWDFST--PELLKTIDVK----FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~--~~~~~~~~~~----~~v~~~~~~~~~~~~~  112 (112)
                      +||++.  +.+..++...    .....+.|+|+|++++
T Consensus       166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL  203 (311)
T KOG1446|consen  166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSIL  203 (311)
T ss_pred             EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence            999985  3444454433    2788999999999863

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.63  E-value=3.3e-14  Score=94.57  Aligned_cols=97  Identities=15%  Similarity=0.213  Sum_probs=81.5

Q ss_pred             CCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEec-CCCCccceeEEEEeeecCCcEEEEe
Q 033738            7 SYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP-ASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         7 ~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      ..+.+ ++|++. ++.+++++ |+.|++||+.+++.+..+..|.+.|.+++|+| ++.       ++++++.|+.+++||
T Consensus       533 ~~v~~-l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~-------~L~Sgs~Dg~v~iWd  604 (793)
T PLN00181        533 SKLSG-ICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPT-------LLASGSDDGSVKLWS  604 (793)
T ss_pred             Cceee-EEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCC-------EEEEEcCCCEEEEEE
Confidence            45666 889874 68888888 99999999998888888899999999999997 553       778999999999999


Q ss_pred             CCCCceEEEEecCCCEEEEEEc-CCCcEe
Q 033738           84 FSTPELLKTIDVKFPIFSMVRG-KKGFAV  111 (112)
Q Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~~  111 (112)
                      ++++.++..+..+..+.++.|+ ++|..+
T Consensus       605 ~~~~~~~~~~~~~~~v~~v~~~~~~g~~l  633 (793)
T PLN00181        605 INQGVSIGTIKTKANICCVQFPSESGRSL  633 (793)
T ss_pred             CCCCcEEEEEecCCCeEEEEEeCCCCCEE
Confidence            9999888888777788899985 455544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.63  E-value=2.2e-15  Score=91.16  Aligned_cols=102  Identities=23%  Similarity=0.258  Sum_probs=83.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc-cCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG-HTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.||...|.. +.||||.++|++++ +..+++||..+|.....+.. +...+.+++|.||+.       .+++|+.|+.+
T Consensus       265 lvgh~~~V~y-i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-------~~V~Gs~dr~i  336 (519)
T KOG0293|consen  265 LVGHSQPVSY-IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-------RFVTGSPDRTI  336 (519)
T ss_pred             eecccCceEE-EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCc-------eeEecCCCCcE
Confidence            5689999998 99999999999988 88899999999987666653 346688999999995       67799999999


Q ss_pred             EEEeCCCCceEEEEecCC--CEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVKF--PIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~  112 (112)
                      ..||+. |+....+.+-.  .|.+++.++||++++
T Consensus       337 ~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl  370 (519)
T KOG0293|consen  337 IMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVL  370 (519)
T ss_pred             EEecCC-cchhhcccccccceeEEEEEcCCCcEEE
Confidence            999987 55555554432  689999999998764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=8.8e-15  Score=92.39  Aligned_cols=100  Identities=21%  Similarity=0.272  Sum_probs=90.6

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      |++|.+++.+ ++.+|...++++++ |-.|++||.+.. .+...+.+|...|.+++|.|+..      +.+++++.|+++
T Consensus        93 FeAH~DyIR~-iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~------ntFaS~sLDrTV  165 (794)
T KOG0276|consen   93 FEAHSDYIRS-IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP------NTFASASLDRTV  165 (794)
T ss_pred             eeccccceee-eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc------cceeeeeccccE
Confidence            6789999998 99999999999999 799999998764 56678999999999999999886      477899999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcCCC
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKG  108 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~  108 (112)
                      ++|.+.+..+..++.+|. .|+++.|-+.|
T Consensus       166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~g  195 (794)
T KOG0276|consen  166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGG  195 (794)
T ss_pred             EEEEcCCCCCceeeeccccCcceEEeccCC
Confidence            999999999999999887 99999998766

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.62  E-value=3.5e-14  Score=81.41  Aligned_cols=103  Identities=23%  Similarity=0.355  Sum_probs=80.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeE------------
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILS------------   68 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------   68 (112)
                      +.+|++.|.. +-|....+.++++. |+.||+||.+++..+..+.. ..+|+++.++++++    ++.            
T Consensus       139 ~~ghtg~Ir~-v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~----ilTia~gssV~Fwda  212 (334)
T KOG0278|consen  139 ISGHTGGIRT-VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGR----ILTIAYGSSVKFWDA  212 (334)
T ss_pred             hcCCCCccee-EEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCC----EEEEecCceeEEecc
Confidence            4679999998 99998888888877 89999999999876665542 34566666666663    221            


Q ss_pred             -------------------------EEEeeecCCcEEEEeCCCCceEEEE-ecCC-CEEEEEEcCCCcE
Q 033738           69 -------------------------YCWTASLDETIKYWDFSTPELLKTI-DVKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        69 -------------------------~~~~~~~d~~i~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~  110 (112)
                                               ++++++.|..++.||+.+|+.+... ++|. +|.++.|+|+|+.
T Consensus       213 ksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~  281 (334)
T KOG0278|consen  213 KSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL  281 (334)
T ss_pred             ccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCce
Confidence                                     6778888889999999998887775 5554 9999999999974

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.62  E-value=1.2e-14  Score=84.92  Aligned_cols=94  Identities=21%  Similarity=0.372  Sum_probs=79.4

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      ..|.+.|.+ ++|+.||..+++++ |+.+++||+.+++ ...+..|.++|..+.|-+...  .   ..++++++|.++++
T Consensus        69 ~~~~~PvL~-v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~--~---~cl~TGSWDKTlKf  141 (347)
T KOG0647|consen   69 QSHDGPVLD-VCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMN--Y---QCLVTGSWDKTLKF  141 (347)
T ss_pred             hccCCCeEE-EEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCC--c---ceeEecccccceee
Confidence            357889998 99999999999998 9999999999984 778888999999999987652  1   14679999999999


Q ss_pred             EeCCCCceEEEEecCCCEEEEE
Q 033738           82 WDFSTPELLKTIDVKFPIFSMV  103 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~  103 (112)
                      ||.+...++.++..+..++++.
T Consensus       142 WD~R~~~pv~t~~LPeRvYa~D  163 (347)
T KOG0647|consen  142 WDTRSSNPVATLQLPERVYAAD  163 (347)
T ss_pred             cccCCCCeeeeeeccceeeehh
Confidence            9999998888888776666543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.61  E-value=7.6e-15  Score=87.79  Aligned_cols=101  Identities=19%  Similarity=0.217  Sum_probs=83.1

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.||++.|.. +.|++ ...+++++ |.+|+.||+.++.....+.. ....++++.+|...       ++++++.|..++
T Consensus       256 l~GHt~~Vs~-V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~-------Ll~~gssdr~ir  325 (423)
T KOG0313|consen  256 LEGHTEPVSS-VVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK-------LLASGSSDRHIR  325 (423)
T ss_pred             ecccccceee-EEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc-------eeeecCCCCcee
Confidence            6899999998 99988 66677777 99999999999987777765 35678999999874       778999999999


Q ss_pred             EEeCCCCc---eEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           81 YWDFSTPE---LLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~~---~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      +||.+++.   ..+++..|. .|.++.|+|...++|
T Consensus       326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~  361 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQL  361 (423)
T ss_pred             ecCCCCCCCceeEEeeecchhhhhheecCCCCceEE
Confidence            99998752   345566666 999999999887654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.61  E-value=1.8e-14  Score=91.07  Aligned_cols=101  Identities=23%  Similarity=0.305  Sum_probs=90.2

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      |+...+++ ++.++.|..+++|+ .+.+++||.++.+.+..+.+|...|..+-.+++|.       .+++++.|++|++|
T Consensus       169 G~k~siYS-LA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt-------~~ls~sSDgtIrlW  240 (735)
T KOG0308|consen  169 GPKDSIYS-LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT-------RLLSASSDGTIRLW  240 (735)
T ss_pred             CCccceee-eecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC-------eEeecCCCceEEee
Confidence            67788887 99999998888888 89999999999988888999999999999999994       56699999999999


Q ss_pred             eCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           83 DFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      |+...+|+.++..|. .|+++..+|+-..+|
T Consensus       241 dLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY  271 (735)
T KOG0308|consen  241 DLGQQRCLATYIVHKEGVWALQSSPSFTHVY  271 (735)
T ss_pred             eccccceeeeEEeccCceEEEeeCCCcceEE
Confidence            999999999998887 899998887766554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.61  E-value=1e-14  Score=83.75  Aligned_cols=103  Identities=24%  Similarity=0.285  Sum_probs=85.8

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee--eccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS--SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +++|...+.. ++|+.+|..|++++ |+++++|++...+...  ...+|.+.|-.++|+|..+      ..+++++.|.+
T Consensus        16 ~~~~~~~v~S-v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~------d~~atas~dk~   88 (313)
T KOG1407|consen   16 LQGHVQKVHS-VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP------DLFATASGDKT   88 (313)
T ss_pred             hhhhhhcceE-EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC------cceEEecCCce
Confidence            3578888887 99999999999999 9999999998664333  3457888888999998875      36679999999


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +++||.+.+++...+.....-..+.|+|+|+++
T Consensus        89 ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~  121 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARIETKGENINITWSPDGEYI  121 (313)
T ss_pred             EEEEEeccCcEEEEeeccCcceEEEEcCCCCEE
Confidence            999999999999988877655568999999875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=2.6e-14  Score=84.31  Aligned_cols=106  Identities=25%  Similarity=0.401  Sum_probs=76.8

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCce-----eeeccccCCceEEEEEecCCCCccceeE------
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQ-----ISSLEGHTAPVTTVIVVPASTPATKILS------   68 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~------   68 (112)
                      +|+||.+.|.+ ++|+.||+.|++++ |+.|++|+++....     ++.-. ..+..+.+.|+||.+  ..++.      
T Consensus        81 ~LKgH~~~vt~-~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~--s~vv~~~~g~~  156 (420)
T KOG2096|consen   81 VLKGHKKEVTD-VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCK--SVVVSVKRGNK  156 (420)
T ss_pred             hhhccCCceee-eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcc--eEEEEEccCCE
Confidence            37899999998 99999999999998 99999999875321     11100 111234555555553  22211      


Q ss_pred             --------------------------------------------EEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEE
Q 033738           69 --------------------------------------------YCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMV  103 (112)
Q Consensus        69 --------------------------------------------~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~  103 (112)
                                                                  ++++++.|..|.+|+++ |+.+..+.... ..+..+
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence                                                        78899999999999998 88888887655 666677


Q ss_pred             EcCCCcEe
Q 033738          104 RGKKGFAV  111 (112)
Q Consensus       104 ~~~~~~~~  111 (112)
                      .+|+|+++
T Consensus       236 vSP~GRFi  243 (420)
T KOG2096|consen  236 VSPDGRFI  243 (420)
T ss_pred             eCCCCcEE
Confidence            88888875

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=6.3e-14  Score=79.28  Aligned_cols=94  Identities=17%  Similarity=0.309  Sum_probs=72.3

Q ss_pred             CCcCCCeEEcCCCCEEEEE--c-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec---CCcEE
Q 033738            7 SYVSSPPAFSNDVKRLLVC--T-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL---DETIK   80 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~--~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~   80 (112)
                      +.|.+ ++|+|+|+.++..  . +..+.+||++ ++.+..+.  ...+..+.|+|+|+       +++.++.   .|.+.
T Consensus        60 ~~I~~-~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~-------~l~~~g~~n~~G~l~  128 (194)
T PF08662_consen   60 GPIHD-VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR-------FLVLAGFGNLNGDLE  128 (194)
T ss_pred             CceEE-EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC-------EEEEEEccCCCcEEE
Confidence            45887 9999999887644  3 5799999997 55566654  45678899999996       5556653   46799


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      +||.++.+.+...... .+..+.|+|+|+++.
T Consensus       129 ~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~  159 (194)
T PF08662_consen  129 FWDVRKKKKISTFEHS-DATDVEWSPDGRYLA  159 (194)
T ss_pred             EEECCCCEEeeccccC-cEEEEEEcCCCCEEE
Confidence            9999988887666533 678899999999873

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.60  E-value=9.4e-15  Score=88.69  Aligned_cols=101  Identities=19%  Similarity=0.155  Sum_probs=83.7

Q ss_pred             cCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            3 RGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      ++|++.|.. +.|+..- +.|++|+ |.+|++||+.++++...+.-|.+.|.+++|+|...      .++++|+.|+++.
T Consensus       240 ~gHTdavl~-Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p------~~LLsGs~D~~V~  312 (463)
T KOG0270|consen  240 SGHTDAVLA-LSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEP------SVLLSGSYDGTVA  312 (463)
T ss_pred             ccchHHHHH-HHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCc------eEEEeccccceEE
Confidence            478889887 8888764 6778888 99999999999999889988999999999999886      5778999999999


Q ss_pred             EEeCCC-CceEEEEecCCCEEEEEEcCCCcE
Q 033738           81 YWDFST-PELLKTIDVKFPIFSMVRGKKGFA  110 (112)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~  110 (112)
                      +.|.+. +..-..++....|..++|+|....
T Consensus       313 l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~  343 (463)
T KOG0270|consen  313 LKDCRDPSNSGKEWKFDGEVEKVAWDPHSEN  343 (463)
T ss_pred             eeeccCccccCceEEeccceEEEEecCCCce
Confidence            999984 344455666667888888876543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=5.2e-15  Score=96.50  Aligned_cols=101  Identities=19%  Similarity=0.234  Sum_probs=91.6

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      +.....|.. ++|+|...+++++- .|.|++||.+.+..+..|..|+++|..++|+|..+       ++++|+.|-.|++
T Consensus         6 EskSsRvKg-lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp-------lFVSGGDDykIkV   77 (1202)
T KOG0292|consen    6 ESKSSRVKG-LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP-------LFVSGGDDYKIKV   77 (1202)
T ss_pred             hcccccccc-eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCC-------eEEecCCccEEEE
Confidence            445677887 99999999999997 89999999999999999999999999999999997       8899999999999


Q ss_pred             EeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      |++.+.+|+.++.+|. -|+.+.|++.-.+|
T Consensus        78 WnYk~rrclftL~GHlDYVRt~~FHheyPWI  108 (1202)
T KOG0292|consen   78 WNYKTRRCLFTLLGHLDYVRTVFFHHEYPWI  108 (1202)
T ss_pred             EecccceehhhhccccceeEEeeccCCCceE
Confidence            9999999999998887 88888888876654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.59  E-value=6.6e-14  Score=93.13  Aligned_cols=101  Identities=11%  Similarity=0.197  Sum_probs=79.2

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC----c----eeeeccccCCceEEEEEecCCCCccceeEEEEee
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG----L----QISSLEGHTAPVTTVIVVPASTPATKILSYCWTA   73 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~----~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   73 (112)
                      ..|.+.|.+ ++|+|+|+++++++ |+.|++|+....    .    ....+. +...+.+++|++...      .+++++
T Consensus       480 ~~~~~~V~~-i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~------~~las~  551 (793)
T PLN00181        480 LNSSNLVCA-IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIK------SQVASS  551 (793)
T ss_pred             cCCCCcEEE-EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCC------CEEEEE
Confidence            347888887 99999999999998 999999997532    1    111222 345688999987532      267799


Q ss_pred             ecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcC-CCcEe
Q 033738           74 SLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGK-KGFAV  111 (112)
Q Consensus        74 ~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~~~  111 (112)
                      +.|+.+++||+.+++.+..+..|. .|++++|+| ++.++
T Consensus       552 ~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L  591 (793)
T PLN00181        552 NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL  591 (793)
T ss_pred             eCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEE
Confidence            999999999999998888888776 899999997 56654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.59  E-value=5.5e-14  Score=87.17  Aligned_cols=102  Identities=24%  Similarity=0.235  Sum_probs=88.3

Q ss_pred             ccCCCCCcCCCeEEcCCCC-EEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVK-RLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~-~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.||...+.. +.|-|... ++++++ |+.+.+|+-...+-...+..|..-|.+++++||+.       .+++.+.|+.+
T Consensus       143 i~GhSr~ins-~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~-------~Fat~gsDgki  214 (603)
T KOG0318|consen  143 ITGHSRRINS-VDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS-------RFATAGSDGKI  214 (603)
T ss_pred             eeccceeEee-eeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCC-------eEEEecCCccE
Confidence            5789999997 99999875 566777 89999999776666677788999999999999995       88899999999


Q ss_pred             EEEeCCCCceEEEEe---cCC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTID---VKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~---~~~-~v~~~~~~~~~~~~  111 (112)
                      .+||-.+|+.+..+.   .|. .+++++|+||+..+
T Consensus       215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~  250 (603)
T KOG0318|consen  215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF  250 (603)
T ss_pred             EEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence            999999999998887   454 89999999999765

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.59  E-value=5.9e-14  Score=85.37  Aligned_cols=101  Identities=17%  Similarity=0.245  Sum_probs=88.2

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecccc--CCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGH--TAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      ..|.+.|.. +..+|.|.+|++++ |+...+.|++++..+......  +-.+++.+|+|||-       ++.++..|+.+
T Consensus       300 ~~h~~~V~~-ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-------ifgtgt~d~~v  371 (506)
T KOG0289|consen  300 RPHEEPVTG-LSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-------IFGTGTPDGVV  371 (506)
T ss_pred             cccccccee-eeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-------EEeccCCCceE
Confidence            458889998 99999999999999 899999999999877655432  33478999999994       78899999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ++||+.++..+..+..|. +|..+.|+.+|.++
T Consensus       372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~L  404 (506)
T KOG0289|consen  372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWL  404 (506)
T ss_pred             EEEEcCCccccccCCCCCCceeEEEeccCceEE
Confidence            999999999999999887 99999999999876

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.59  E-value=1.4e-14  Score=84.41  Aligned_cols=100  Identities=15%  Similarity=0.153  Sum_probs=81.3

Q ss_pred             CCCCcCCCeEEcC--CCCEEEEEcCCeEEEEeCCCCceeeec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            5 GRSYVSSPPAFSN--DVKRLLVCTSNTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         5 h~~~v~~~~~~~~--~~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      |....+. -+|+|  ||+.+++.+|+++..||+++.+....+ ..|...|..+.|+|+..      .++++++.|+.+++
T Consensus       169 ~~~~fts-g~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq------~~lvt~gDdgyvri  241 (370)
T KOG1007|consen  169 MRHSFTS-GAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQ------HILVTCGDDGYVRI  241 (370)
T ss_pred             ccceecc-cccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCce------EEEEEcCCCccEEE
Confidence            3445555 78998  678999999999999999987665555 46888899999999874      47789999999999


Q ss_pred             EeCCC-CceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           82 WDFST-PELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ||.+. ..+++.+..|. +|++++|+|.-..+
T Consensus       242 WD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL  273 (370)
T KOG1007|consen  242 WDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL  273 (370)
T ss_pred             EeccCCCccccccCCCceEEEEEEecCccceE
Confidence            99985 56788888888 99999999976543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.58  E-value=4.4e-15  Score=85.04  Aligned_cols=99  Identities=21%  Similarity=0.364  Sum_probs=86.1

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      |...|.. ++|+.|.+.|++|+ +.-++++|++.. .+...+.+|.+.|..+.|.....       -+++...|+.+|+|
T Consensus        99 hkhivk~-~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~-------~iLSSadd~tVRLW  170 (334)
T KOG0278|consen   99 HKHIVKA-VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK-------CILSSADDKTVRLW  170 (334)
T ss_pred             hhheeee-EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc-------eEEeeccCCceEEE
Confidence            6666776 99999999999999 899999999875 45678889999999999987663       33366999999999


Q ss_pred             eCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           83 DFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      |.+++..++.+....+|.++.++++|+++
T Consensus       171 D~rTgt~v~sL~~~s~VtSlEvs~dG~il  199 (334)
T KOG0278|consen  171 DHRTGTEVQSLEFNSPVTSLEVSQDGRIL  199 (334)
T ss_pred             EeccCcEEEEEecCCCCcceeeccCCCEE
Confidence            99999999999999999999999999876

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.58  E-value=3.5e-14  Score=83.40  Aligned_cols=101  Identities=17%  Similarity=0.220  Sum_probs=86.5

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      ++.|.+.+.+ ++.  ++.++++|+ |.+|++||+++...+..+..|.+.++++.|.+.-. .+    .++++..||.|.
T Consensus        39 ~~aH~~sita-vAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S-~s----hLlS~sdDG~i~  110 (362)
T KOG0294|consen   39 FSAHAGSITA-LAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS-KS----HLLSGSDDGHII  110 (362)
T ss_pred             ccccccceeE-EEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc-hh----heeeecCCCcEE
Confidence            4668888876 666  578999998 99999999999888888888999999999987652 02    455999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcE
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~  110 (112)
                      +|+...-+++..++.|. .|+.++.+|.|+.
T Consensus       111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KL  141 (362)
T KOG0294|consen  111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKL  141 (362)
T ss_pred             EEEcCCeEEeeeecccccccceeEecCCCce
Confidence            99999888999999887 8999999999875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.57  E-value=9.1e-15  Score=93.79  Aligned_cols=103  Identities=11%  Similarity=0.147  Sum_probs=87.9

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      |..|...+.+ +.|++-. ..|++|+ ||.|+.||++..+....+.+....|..+.|+|...      .+++++...|.+
T Consensus       129 f~EH~Rs~~~-ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~------~~F~s~~dsG~l  201 (839)
T KOG0269|consen  129 FNEHERSANK-LDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG------NKFASIHDSGYL  201 (839)
T ss_pred             hhhhccceee-eeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC------ceEEEecCCceE
Confidence            5679999998 9999865 7888998 99999999998877777877778899999999765      377899999999


Q ss_pred             EEEeCCC-CceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFST-PELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ++||++. .++..++..|. +|.++.|+|++.+|
T Consensus       202 qlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~l  235 (839)
T KOG0269|consen  202 QLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWL  235 (839)
T ss_pred             EEeeccCchhHHHHhhcccCceEEEeecCCCcee
Confidence            9999986 45667777776 99999999988876

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.57  E-value=1.1e-13  Score=80.92  Aligned_cols=96  Identities=19%  Similarity=0.263  Sum_probs=73.1

Q ss_pred             CCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCC-Ccee-eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            6 RSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTST-GLQI-SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         6 ~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+.|.+ ++|||. ...+++++ |++||+|+++. +... +....+.+++.+++|+.++.       .+++++.|+.+++
T Consensus        27 ~DsIS~-l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-------kVf~g~~Dk~~k~   98 (347)
T KOG0647|consen   27 EDSISA-LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-------KVFSGGCDKQAKL   98 (347)
T ss_pred             ccchhe-eEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-------eEEeeccCCceEE
Confidence            456777 999995 45555777 99999999876 3322 34456899999999999994       5569999999999


Q ss_pred             EeCCCCceEEEEecCCCEEEEEEcCCCc
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVRGKKGF  109 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~  109 (112)
                      ||+.+++....-.+..+|..+.|-+...
T Consensus        99 wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~  126 (347)
T KOG0647|consen   99 WDLASGQVSQVAAHDAPVKTCHWVPGMN  126 (347)
T ss_pred             EEccCCCeeeeeecccceeEEEEecCCC
Confidence            9999996654444444898888866543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=5.8e-15  Score=94.20  Aligned_cols=102  Identities=21%  Similarity=0.275  Sum_probs=88.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|...+.. ++|+|+|++++.++ |..+++||+..|+....|..|++.+..+.++|..-       ++++|+.|++++
T Consensus       150 ~~s~~~vv~~-l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~-------Lla~Gs~d~tv~  221 (825)
T KOG0267|consen  150 YKSHTRVVDV-LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV-------LLAPGSSDRTVR  221 (825)
T ss_pred             ecCCcceeEE-EeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhh-------hhccCCCCceee
Confidence            4567778887 99999999999999 79999999999998999999999999999999873       677999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||+++-+.+....... .|.+..|+|++..+
T Consensus       222 f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~  253 (825)
T KOG0267|consen  222 FWDLETFEVISSGKPETDGVRSLAFNPDGKIV  253 (825)
T ss_pred             eeccceeEEeeccCCccCCceeeeecCCceee
Confidence            99998766665555444 89999999998765

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.57  E-value=3.6e-15  Score=92.30  Aligned_cols=92  Identities=24%  Similarity=0.416  Sum_probs=82.4

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK   91 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~   91 (112)
                      ++++||.+...++. ||.|.+||+.....++.|.+|...+.|+.++++|.       -+-+|+.|.++|-||++++..+.
T Consensus       515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt-------klWTGGlDntvRcWDlregrqlq  587 (705)
T KOG0639|consen  515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT-------KLWTGGLDNTVRCWDLREGRQLQ  587 (705)
T ss_pred             hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc-------eeecCCCccceeehhhhhhhhhh
Confidence            78899998777665 99999999998888999999999999999999994       56699999999999999998887


Q ss_pred             EEecCCCEEEEEEcCCCcEe
Q 033738           92 TIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        92 ~~~~~~~v~~~~~~~~~~~~  111 (112)
                      .....+.|.++.++|.++++
T Consensus       588 qhdF~SQIfSLg~cP~~dWl  607 (705)
T KOG0639|consen  588 QHDFSSQIFSLGYCPTGDWL  607 (705)
T ss_pred             hhhhhhhheecccCCCccce
Confidence            77777789999999998876

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=2.9e-13  Score=79.25  Aligned_cols=97  Identities=21%  Similarity=0.405  Sum_probs=76.1

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc-------------------------------------------
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-------------------------------------------   39 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~-------------------------------------------   39 (112)
                      .-.+.+.+ +.|+++|+.+++++ |.++++||..+++                                           
T Consensus        12 ~~~~~i~s-l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN   90 (311)
T KOG1446|consen   12 ETNGKINS-LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN   90 (311)
T ss_pred             cCCCceeE-EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence            34567887 99999999999987 7899999987543                                           


Q ss_pred             -eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcE
Q 033738           40 -QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        40 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~  110 (112)
                       .++-|.+|...|..++.+|.++       .+++++.|+++++||++..+|.-.+.... ++  .+|.|+|-+
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d-------~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLi  154 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDD-------TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLI  154 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCC-------eEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcE
Confidence             3566788999999999999885       67799999999999999877765554433 33  466776643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=1.6e-13  Score=80.89  Aligned_cols=107  Identities=18%  Similarity=0.284  Sum_probs=82.1

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeE-----------
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILS-----------   68 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------   68 (112)
                      +|.+|..+|.+ ++||+||+.|++++ |..+.+||+..|.+...+. ...+|+...|+|...  ++.+.           
T Consensus        60 ~lsaH~~pi~s-l~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~--n~~va~~~~~sp~vi~  135 (405)
T KOG1273|consen   60 MLSAHVRPITS-LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKR--NKCVATIMEESPVVID  135 (405)
T ss_pred             hhhccccceeE-EEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccC--CeEEEEEecCCcEEEE
Confidence            46789999997 99999999999999 9999999999887665554 345566666665543  22221           


Q ss_pred             -------------------------------EEEeeecCCcEEEEeCCCCceEEEEecCC--CEEEEEEcCCCcEe
Q 033738           69 -------------------------------YCWTASLDETIKYWDFSTPELLKTIDVKF--PIFSMVRGKKGFAV  111 (112)
Q Consensus        69 -------------------------------~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~  111 (112)
                                                     |+++|...|.+.++|..+-+++..++...  .+..+.++..|+.+
T Consensus       136 ~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~l  211 (405)
T KOG1273|consen  136 FSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFL  211 (405)
T ss_pred             ecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEE
Confidence                                           78889999999999999888887776544  77778887777654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.56  E-value=2.6e-14  Score=86.09  Aligned_cols=102  Identities=20%  Similarity=0.251  Sum_probs=87.0

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC--------C--------CceeeeccccCCceEEEEEecCCCCcc
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS--------T--------GLQISSLEGHTAPVTTVIVVPASTPAT   64 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~   64 (112)
                      |..|...|++ ++|+|+|+.|++|+ ++.+.+|-..        +        ......+.+|...+..++|+|++.   
T Consensus        61 Ls~H~~aVN~-vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~---  136 (434)
T KOG1009|consen   61 LSRHTRAVNV-VRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN---  136 (434)
T ss_pred             ccCCcceeEE-EEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc---
Confidence            6789999998 99999999999999 6999999765        2        112345567888999999999995   


Q ss_pred             ceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           65 KILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        65 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                          ++++++-|..+++||+..|........|. .++.++|.|-++++
T Consensus       137 ----~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv  180 (434)
T KOG1009|consen  137 ----FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYV  180 (434)
T ss_pred             ----eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhh
Confidence                78899999999999999999999988887 89999999987764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=1.1e-13  Score=84.57  Aligned_cols=105  Identities=23%  Similarity=0.297  Sum_probs=90.5

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC---------CCceeeeccccCCceEEEEEecCCCCccceeEEEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS---------TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW   71 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   71 (112)
                      +.+|...|++ +.|+.||..+++++ ||.|.+|.+-         +.++.+.+..|..+|+.+...+.+.    . ..++
T Consensus       119 ~~aHYQ~ITc-L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~----~-~rl~  192 (476)
T KOG0646|consen  119 LSAHYQSITC-LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT----N-ARLY  192 (476)
T ss_pred             HHhhccceeE-EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc----c-ceEE
Confidence            4679999998 99999999999999 9999999763         2345678889999999999887652    1 3677


Q ss_pred             eeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           72 TASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        72 ~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      +++.|+++++||+..|..+.++..+..+.+++..|.+..+|
T Consensus       193 TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~y  233 (476)
T KOG0646|consen  193 TASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVY  233 (476)
T ss_pred             EecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEE
Confidence            99999999999999999999999999999999999887665

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.56  E-value=4.6e-14  Score=90.66  Aligned_cols=98  Identities=16%  Similarity=0.199  Sum_probs=80.5

Q ss_pred             CCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            5 GRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         5 h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      -.+.|.+ +.|+|. +..++++. .|.+++||++.. +...++..|.++|.|+.|+|+..       ++++||.|+++++
T Consensus       175 nSESiRD-V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-------~lATGGRDK~vki  246 (839)
T KOG0269|consen  175 NSESIRD-VKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-------WLATGGRDKMVKI  246 (839)
T ss_pred             cchhhhc-eeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-------eeeecCCCccEEE
Confidence            3456787 999985 57888887 699999999865 45578889999999999999874       8899999999999


Q ss_pred             EeCCCCc--eEEEEecCCCEEEEEEcCCCcE
Q 033738           82 WDFSTPE--LLKTIDVKFPIFSMVRGKKGFA  110 (112)
Q Consensus        82 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~  110 (112)
                      ||..+++  ...++....++..+.|-|+-.+
T Consensus       247 Wd~t~~~~~~~~tInTiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  247 WDMTDSRAKPKHTINTIAPVGRVKWRPARSY  277 (839)
T ss_pred             EeccCCCccceeEEeecceeeeeeeccCccc
Confidence            9998653  4556666669999999998654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.54  E-value=4.3e-14  Score=87.65  Aligned_cols=103  Identities=19%  Similarity=0.320  Sum_probs=75.9

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCc-eeeecc-----ccCCceEEEEEecCCCCccceeEEEEee
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGL-QISSLE-----GHTAPVTTVIVVPASTPATKILSYCWTA   73 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~-~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~   73 (112)
                      .+||...+.+ .+|+|+. +.+++++ |+++++||++..+ ....++     +..-+++.++|++++.       .++++
T Consensus       264 TKGHia~lt~-g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-------~iAag  335 (641)
T KOG0772|consen  264 TKGHIAELTC-GCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-------LIAAG  335 (641)
T ss_pred             cCCceeeeec-cccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-------hhhhc
Confidence            3789999998 9999986 5677777 9999999987542 233332     2233568999999996       67899


Q ss_pred             ecCCcEEEEeCCCCc--eEE-EEecC---CCEEEEEEcCCCcEeC
Q 033738           74 SLDETIKYWDFSTPE--LLK-TIDVK---FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        74 ~~d~~i~~~~~~~~~--~~~-~~~~~---~~v~~~~~~~~~~~~~  112 (112)
                      +.||.|.+|+.....  +.. .-..|   ..++++.|+++|++|.
T Consensus       336 c~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  336 CLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL  380 (641)
T ss_pred             ccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence            999999999975421  111 22223   2799999999999863

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.54  E-value=2.1e-13  Score=81.74  Aligned_cols=100  Identities=27%  Similarity=0.391  Sum_probs=85.1

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC-------------------------CceeeeccccCCceEEEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST-------------------------GLQISSLEGHTAPVTTVIV   56 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~-------------------------~~~~~~~~~~~~~v~~~~~   56 (112)
                      .||...|.+ ++..++|..+++++ |..+.+|+..+                         +.++..+.+|..+|..+.|
T Consensus       190 ~GHk~~V~s-Vsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w  268 (423)
T KOG0313|consen  190 RGHKRSVDS-VSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW  268 (423)
T ss_pred             cccccceeE-EEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence            489999997 99999999999999 99999999321                         1245667789999999999


Q ss_pred             ecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           57 VPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ++.+        .+.+++.|++|+.||+.++.....+.......++.++|..+.|
T Consensus       269 ~d~~--------v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll  315 (423)
T KOG0313|consen  269 SDAT--------VIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLL  315 (423)
T ss_pred             cCCC--------ceEeecccceEEEEEeecccceeeeecCcceeEeeccccccee
Confidence            9855        5669999999999999999999888888889999988876654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.53  E-value=4.7e-13  Score=85.35  Aligned_cols=94  Identities=26%  Similarity=0.341  Sum_probs=82.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.||.+.|.+ +++...+..+++|+ |.++++||..++++...+.+|...+.++...+.         ++++|+.|.+++
T Consensus       245 l~GH~g~V~~-l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~---------~~~sgs~D~tVk  314 (537)
T KOG0274|consen  245 LVGHFGGVWG-LAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF---------LLVSGSRDNTVK  314 (537)
T ss_pred             ccCCCCCcee-EEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc---------eEeeccCCceEE
Confidence            6789999998 99987789999999 999999999999999999999998888866433         456789999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEc
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRG  105 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~  105 (112)
                      +|++.++.++.++..|. +|.++..+
T Consensus       315 VW~v~n~~~l~l~~~h~~~V~~v~~~  340 (537)
T KOG0274|consen  315 VWDVTNGACLNLLRGHTGPVNCVQLD  340 (537)
T ss_pred             EEeccCcceEEEeccccccEEEEEec
Confidence            99999999999998655 89988877

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.53  E-value=8.8e-14  Score=81.97  Aligned_cols=99  Identities=28%  Similarity=0.282  Sum_probs=84.2

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeec---cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL---EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      ...|.+ +.|+|.|.+|+.|. ...+++||+++.++...-   .+|.+.|+++.+++.++       ++++++.||.|++
T Consensus       216 ~~~vrs-iSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-------lYvTaSkDG~Ikl  287 (430)
T KOG0640|consen  216 TEPVRS-ISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-------LYVTASKDGAIKL  287 (430)
T ss_pred             cceeee-EeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-------EEEEeccCCcEEe
Confidence            456777 99999999999999 589999999988765433   35788999999999995       8889999999999


Q ss_pred             EeCCCCceEEEEec---CCCEEEEEEcCCCcEeC
Q 033738           82 WDFSTPELLKTIDV---KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~  112 (112)
                      ||--+++|+.++..   .+.|.+..|..+|++++
T Consensus       288 wDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL  321 (430)
T KOG0640|consen  288 WDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL  321 (430)
T ss_pred             eccccHHHHHHHHhhcCCceeeeEEEccCCeEEe
Confidence            99988999988853   23899999999999874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.52  E-value=5.4e-13  Score=81.92  Aligned_cols=100  Identities=20%  Similarity=0.222  Sum_probs=86.3

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCc-eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL-QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      .|..+|.. +.+-|.|..+++++...+++||+.+|. .+.....|...|+|+++..++.       -+++++-|+.+++|
T Consensus       194 nhg~pVe~-vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~-------rLlS~sLD~~VKVf  265 (487)
T KOG0310|consen  194 NHGCPVES-VLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST-------RLLSGSLDRHVKVF  265 (487)
T ss_pred             cCCCceee-EEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCc-------eEeecccccceEEE
Confidence            36777887 889999999999999999999998654 4455556999999999998873       55599999999999


Q ss_pred             eCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           83 DFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      |+.+.+.+..+..+.+|.+++.+|+++.+
T Consensus       266 d~t~~Kvv~s~~~~~pvLsiavs~dd~t~  294 (487)
T KOG0310|consen  266 DTTNYKVVHSWKYPGPVLSIAVSPDDQTV  294 (487)
T ss_pred             EccceEEEEeeecccceeeEEecCCCceE
Confidence            99999999999999999999999988754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.52  E-value=1.8e-13  Score=87.99  Aligned_cols=99  Identities=27%  Similarity=0.270  Sum_probs=88.8

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      .+.|.+ +++||||++|+.+= |++|++|-+++-+-...+-+|.-||.++..+|+..       .++||+.|..+++|.+
T Consensus       508 ~ddvL~-v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSk-------livTgSADKnVKiWGL  579 (888)
T KOG0306|consen  508 EDDVLC-VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK-------LIVTGSADKNVKIWGL  579 (888)
T ss_pred             cccEEE-EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcC-------eEEeccCCCceEEecc
Confidence            356777 99999999999998 99999999999888888999999999999999995       7789999999999999


Q ss_pred             CCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           85 STPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        85 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      .=|.|-+.+..|. .|.++.|.|....+|
T Consensus       580 dFGDCHKS~fAHdDSvm~V~F~P~~~~FF  608 (888)
T KOG0306|consen  580 DFGDCHKSFFAHDDSVMSVQFLPKTHLFF  608 (888)
T ss_pred             ccchhhhhhhcccCceeEEEEcccceeEE
Confidence            9999999888887 899999999766543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.51  E-value=3.4e-14  Score=88.10  Aligned_cols=97  Identities=18%  Similarity=0.263  Sum_probs=73.7

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC--c-eeeeccccCC--ceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG--L-QISSLEGHTA--PVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~--~-~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+.. ++|++||+++++|. ||+|.+|+....  . ....-..|..  .++++.||++++       ++++-+.|..+++
T Consensus       319 ~~ts-C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-------~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  319 PVTS-CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-------YLLSRGFDDTLKV  390 (641)
T ss_pred             Ccee-eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-------hhhhccCCCceee
Confidence            3454 89999999999998 999999997532  1 1223345655  899999999995       7789999999999


Q ss_pred             EeCCCC-ceEEEEec---CCCEEEEEEcCCCcEeC
Q 033738           82 WDFSTP-ELLKTIDV---KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~-~~~~~~~~---~~~v~~~~~~~~~~~~~  112 (112)
                      ||++.- +++.....   ..+-+.++|+|+.+.|+
T Consensus       391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~  425 (641)
T KOG0772|consen  391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLIL  425 (641)
T ss_pred             eeccccccchhhhcCCCccCCCCccccCCCceEEE
Confidence            999874 45544432   22677889999988764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=6.4e-13  Score=75.58  Aligned_cols=101  Identities=12%  Similarity=0.190  Sum_probs=83.9

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc--c-----CCceEEEEEecCCCCccceeEEEEee
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG--H-----TAPVTTVIVVPASTPATKILSYCWTA   73 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~~~~~~~~~~~   73 (112)
                      +.||++.+..  -++-+|-.+++|+ |.+|++||++-..++..+..  |     ...|..++..|.++       +++++
T Consensus       179 ~sghtghila--lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-------ll~sg  249 (350)
T KOG0641|consen  179 LSGHTGHILA--LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-------LLASG  249 (350)
T ss_pred             ecCCcccEEE--EEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-------eeeec
Confidence            5688988875  4566788899999 99999999987766655532  2     24688999999996       77899


Q ss_pred             ecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           74 SLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        74 ~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      -.|....+||++.+++++.+..|. .+.++.|+|...++
T Consensus       250 ~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yl  288 (350)
T KOG0641|consen  250 HADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYL  288 (350)
T ss_pred             cCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEE
Confidence            999999999999999999998887 99999999987765

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.51  E-value=5.1e-13  Score=80.86  Aligned_cols=97  Identities=22%  Similarity=0.278  Sum_probs=80.1

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc----cCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG----HTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      +.|.. +..+++|..+.+.+ |..+.++|+++.+....+..    -....+.+.|||++.       |+++|+.||.+++
T Consensus       342 g~vtS-l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~-------YvaAGS~dgsv~i  413 (459)
T KOG0288|consen  342 GRVTS-LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS-------YVAAGSADGSVYI  413 (459)
T ss_pred             cceee-EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc-------eeeeccCCCcEEE
Confidence            47776 99999998888888 99999999998765544432    122367889999995       9999999999999


Q ss_pred             EeCCCCceEEEEecCC---CEEEEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDVKF---PIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~  111 (112)
                      |++.++++...+....   .+.++.|+|.|..+
T Consensus       414 W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L  446 (459)
T KOG0288|consen  414 WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL  446 (459)
T ss_pred             EEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence            9999999988887644   59999999999865

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.51  E-value=1.1e-13  Score=81.84  Aligned_cols=101  Identities=21%  Similarity=0.351  Sum_probs=89.0

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |+||.+.|.+ ..|-..|+.+++++ |.+-.+||++++..+..+.+|..+.+.+.-+|..+       ++++.+.|.+.+
T Consensus       268 ltgH~~vV~a-~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr-------LVvTsSrDtTFR  339 (481)
T KOG0300|consen  268 LTGHRAVVSA-CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQR-------LVVTSSRDTTFR  339 (481)
T ss_pred             eeccccceEe-hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcce-------EEEEeccCceeE
Confidence            6889999998 99999999999999 99999999999999999999999999888889885       677999999999


Q ss_pred             EEeCCCC-ceEEEEecCC-CEEEEEEcCCCcE
Q 033738           81 YWDFSTP-ELLKTIDVKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        81 ~~~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~  110 (112)
                      +||++.. ..+..+.+|. .|+++.|+.+.+.
T Consensus       340 LWDFReaI~sV~VFQGHtdtVTS~vF~~dd~v  371 (481)
T KOG0300|consen  340 LWDFREAIQSVAVFQGHTDTVTSVVFNTDDRV  371 (481)
T ss_pred             eccchhhcceeeeecccccceeEEEEecCCce
Confidence            9999854 4567777777 8999999877654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=5.2e-13  Score=87.16  Aligned_cols=102  Identities=19%  Similarity=0.209  Sum_probs=83.6

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc-------c-CCceEEEEEecCCCCccceeEEEEe
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG-------H-TAPVTTVIVVPASTPATKILSYCWT   72 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~~~~~~~~~~~~   72 (112)
                      +.+|.+.|.+ +.++|.+++|++.+ ||.|++|+++++.....+..       . ...+..++|+|++.       .++.
T Consensus       134 lrgh~apVl~-l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-------~la~  205 (933)
T KOG1274|consen  134 LRGHDAPVLQ-LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-------TLAV  205 (933)
T ss_pred             ecccCCceee-eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-------eEEe
Confidence            6789999998 99999999999998 99999999998765444432       1 23456789999974       5668


Q ss_pred             eecCCcEEEEeCCCCceEEEEecCC---CEEEEEEcCCCcEe
Q 033738           73 ASLDETIKYWDFSTPELLKTIDVKF---PIFSMVRGKKGFAV  111 (112)
Q Consensus        73 ~~~d~~i~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~  111 (112)
                      .+.|+.|.+|+....+....+....   .+..+.|+|+|+||
T Consensus       206 ~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi  247 (933)
T KOG1274|consen  206 PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI  247 (933)
T ss_pred             eccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence            8889999999999888887776533   58899999999987

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.50  E-value=1.4e-14  Score=86.41  Aligned_cols=94  Identities=21%  Similarity=0.331  Sum_probs=80.1

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +|.||...|.. +.|+  .+++++++ |.++++|++.+.+.++.+.+|...+-|+++  .++       ++++|+.|.+|
T Consensus       315 VLvGHrAaVNv-Vdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~r-------lvVSGSSDntI  382 (499)
T KOG0281|consen  315 VLVGHRAAVNV-VDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDR-------LVVSGSSDNTI  382 (499)
T ss_pred             HHhhhhhheee-eccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCe-------EEEecCCCceE
Confidence            36789988886 7664  56999998 999999999999999999999988888766  453       67799999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcC
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGK  106 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~  106 (112)
                      ++||+..|.+++.+.+|. -|.++.|..
T Consensus       383 Rlwdi~~G~cLRvLeGHEeLvRciRFd~  410 (499)
T KOG0281|consen  383 RLWDIECGACLRVLEGHEELVRCIRFDN  410 (499)
T ss_pred             EEEeccccHHHHHHhchHHhhhheeecC
Confidence            999999999999998887 788888763

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.49  E-value=1.7e-13  Score=81.91  Aligned_cols=101  Identities=24%  Similarity=0.324  Sum_probs=68.0

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCC----CCcccee--------
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS----TPATKIL--------   67 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~--------   67 (112)
                      +|.||++.|.| +.+  +.+.+++|+ |.+|++||.++++++..+..|...|..+.|+..-    ..++.+.        
T Consensus       232 ~L~GHtGSVLC-Lqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps  308 (499)
T KOG0281|consen  232 ILTGHTGSVLC-LQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPT  308 (499)
T ss_pred             hhhcCCCcEEe-eec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCch
Confidence            37899999986 665  567889998 9999999999998777776666666665554321    0000000        


Q ss_pred             ----------------------EEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEE
Q 033738           68 ----------------------SYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVR  104 (112)
Q Consensus        68 ----------------------~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~  104 (112)
                                            -|+++++.|+++++|++.++++++++.+|. .+-++.+
T Consensus       309 ~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY  368 (499)
T KOG0281|consen  309 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY  368 (499)
T ss_pred             HHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhc
Confidence                                  066677777777777777777777777665 5544443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.49  E-value=1.5e-12  Score=83.11  Aligned_cols=100  Identities=19%  Similarity=0.264  Sum_probs=84.6

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +|.||++.|.. +++-+++.++-++.||.|+.|++ +++.+....+|+..+.++....++.       .+++++.|++++
T Consensus       174 tf~gHtD~VRg-L~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~-------~Ivs~gEDrtlr  244 (745)
T KOG0301|consen  174 TFSGHTDCVRG-LAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDG-------LIVSTGEDRTLR  244 (745)
T ss_pred             hhccchhheee-eEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCC-------eEEEecCCceEE
Confidence            37899999998 99998877765556999999999 5778888899999999999666653       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +|+..  ++.+.+..+. .++++.+-++|..+
T Consensus       245 iW~~~--e~~q~I~lPttsiWsa~~L~NgDIv  274 (745)
T KOG0301|consen  245 IWKKD--ECVQVITLPTTSIWSAKVLLNGDIV  274 (745)
T ss_pred             EeecC--ceEEEEecCccceEEEEEeeCCCEE
Confidence            99975  7888888887 89999888888754

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.48  E-value=6.9e-13  Score=78.48  Aligned_cols=101  Identities=14%  Similarity=0.203  Sum_probs=84.3

Q ss_pred             CCCCcCCCeEEcCCC----CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            5 GRSYVSSPPAFSNDV----KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         5 h~~~v~~~~~~~~~~----~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      |.+.... ++|+-|-    .+++.++ -|.|++.|..+++....+.+|++.|+.+.+.|+.+      .++++++.|..+
T Consensus        88 ~~Esfyt-csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~------qlvls~SkD~sv  160 (385)
T KOG1034|consen   88 HDESFYT-CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP------QLVLSASKDHSV  160 (385)
T ss_pred             CCcceEE-EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCC------cEEEEecCCceE
Confidence            4455555 7776543    3566666 69999999999998999999999999999999986      367799999999


Q ss_pred             EEEeCCCCceEEEEec---CC-CEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDV---KF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~---~~-~v~~~~~~~~~~~~~  112 (112)
                      |+|++++..|+..+.+   |. .|.++.|+++|.+|.
T Consensus       161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~  197 (385)
T KOG1034|consen  161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIA  197 (385)
T ss_pred             EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeee
Confidence            9999999999998864   44 899999999998763

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.48  E-value=3.5e-13  Score=79.71  Aligned_cols=78  Identities=19%  Similarity=0.368  Sum_probs=68.9

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeec---cccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSL---EGHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      +.||.+.|.. +++.|+. +++++++ |.+|++|++++..++..+   .+|...|.++.|++++.       ++++++.|
T Consensus       131 ~~ghG~sINe-ik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd-------~i~ScGmD  202 (385)
T KOG1034|consen  131 YRGHGGSINE-IKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD-------RIASCGMD  202 (385)
T ss_pred             eeccCccchh-hhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC-------eeeccCCc
Confidence            4689999998 9999986 7888998 999999999999877665   56889999999999996       88899999


Q ss_pred             CcEEEEeCCCC
Q 033738           77 ETIKYWDFSTP   87 (112)
Q Consensus        77 ~~i~~~~~~~~   87 (112)
                      .++.+|++...
T Consensus       203 hslk~W~l~~~  213 (385)
T KOG1034|consen  203 HSLKLWRLNVK  213 (385)
T ss_pred             ceEEEEecChh
Confidence            99999998743

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.7e-12  Score=81.27  Aligned_cols=103  Identities=15%  Similarity=0.206  Sum_probs=84.8

Q ss_pred             ccCCCCCcCCCeEEcCC-CCEEEEEc---CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEe-eecC
Q 033738            2 IRGGRSYVSSPPAFSND-VKRLLVCT---SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT-ASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~-~~~l~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~d   76 (112)
                      +.+|...|.. ++|+|- ...||+|+   |+.|++||..++..+..+.. ...|..+.|++..+   .   ++.+ |..+
T Consensus       339 ~~~H~aAVKA-~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~k---E---i~sthG~s~  410 (484)
T KOG0305|consen  339 FTEHTAAVKA-LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYK---E---LLSTHGYSE  410 (484)
T ss_pred             EeccceeeeE-eeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCC---E---EEEecCCCC
Confidence            4679999998 999996 47788875   79999999999988877663 56799999999874   2   3333 4456


Q ss_pred             CcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           77 ETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      ..|.+|++.+.+.+..+..|. .|..++++|||+.++
T Consensus       411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~  447 (484)
T KOG0305|consen  411 NQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIV  447 (484)
T ss_pred             CcEEEEeccccceeeeecCCcceeEEEEECCCCCEEE
Confidence            789999999988888888888 999999999998763

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.48  E-value=4.5e-13  Score=80.90  Aligned_cols=99  Identities=18%  Similarity=0.157  Sum_probs=80.9

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      |.||...|.- +.|+|.- +.|++++ |..|.+|++.+++.+..+. |...|.++.|+.+|.       ++++.+.|..|
T Consensus       127 L~gH~rrVg~-V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs-------~l~TtckDKkv  197 (472)
T KOG0303|consen  127 LYGHQRRVGL-VQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS-------LLCTTCKDKKV  197 (472)
T ss_pred             EeecceeEEE-EeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCc-------eeeeeccccee
Confidence            6899999987 9999975 5666666 9999999999998887877 999999999999994       78899999999


Q ss_pred             EEEeCCCCceEEEEecCC--CEEEEEEcCCCc
Q 033738           80 KYWDFSTPELLKTIDVKF--PIFSMVRGKKGF  109 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~  109 (112)
                      |+||.++++.+..-..|.  ....+.|-.+|.
T Consensus       198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~  229 (472)
T KOG0303|consen  198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGK  229 (472)
T ss_pred             EEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence            999999998887765443  333344555554

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.47  E-value=1.1e-12  Score=83.27  Aligned_cols=102  Identities=14%  Similarity=0.283  Sum_probs=85.4

Q ss_pred             ccCCCCCcCCCeEE-cCCCCEEEEEc-CCeEEEEeCCCCce--e--------eecc-ccCCceEEEEEecCCCCccceeE
Q 033738            2 IRGGRSYVSSPPAF-SNDVKRLLVCT-SNTVSIFSTSTGLQ--I--------SSLE-GHTAPVTTVIVVPASTPATKILS   68 (112)
Q Consensus         2 ~~~h~~~v~~~~~~-~~~~~~l~~~~-~~~v~~~~~~~~~~--~--------~~~~-~~~~~v~~~~~~~~~~~~~~~~~   68 (112)
                      +..|.++|.+ ++. .++...+++|+ |+.|.+||++++..  +        ..+. ++...+.+++..+.+       .
T Consensus       113 ir~H~DYVkc-la~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-------t  184 (735)
T KOG0308|consen  113 IRTHKDYVKC-LAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-------T  184 (735)
T ss_pred             hhcccchhee-eeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-------e
Confidence            4579999998 998 77888899999 99999999987621  1        2222 566778999999988       3


Q ss_pred             EEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           69 YCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .+++|+..+.+++||.++++.+..+.+|. .|..+..++||..+
T Consensus       185 ~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~  228 (735)
T KOG0308|consen  185 IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRL  228 (735)
T ss_pred             EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeE
Confidence            78899999999999999999998998887 99999999999654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.47  E-value=3.9e-13  Score=80.68  Aligned_cols=76  Identities=24%  Similarity=0.349  Sum_probs=66.9

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC---CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST---GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +.|.+.|.. +.|+.+-.+|++|+ ||++++||++.   ++++..++-|..+|++++|+|...      +.+++++.|.+
T Consensus       299 kAh~sDVNV-ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~------s~iaasg~D~Q  371 (440)
T KOG0302|consen  299 KAHNSDVNV-ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED------SVIAASGEDNQ  371 (440)
T ss_pred             eccCCceee-EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC------ceEEeccCCCc
Confidence            678899998 99999888899998 79999999975   456678999999999999999876      57779999999


Q ss_pred             EEEEeCC
Q 033738           79 IKYWDFS   85 (112)
Q Consensus        79 i~~~~~~   85 (112)
                      +.+||+.
T Consensus       372 itiWDls  378 (440)
T KOG0302|consen  372 ITIWDLS  378 (440)
T ss_pred             EEEEEee
Confidence            9999975

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.47  E-value=5.1e-12  Score=75.69  Aligned_cols=92  Identities=20%  Similarity=0.191  Sum_probs=78.5

Q ss_pred             eEEcCCCCEEEEEc---CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc-EEEEeCCCCc
Q 033738           13 PAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET-IKYWDFSTPE   88 (112)
Q Consensus        13 ~~~~~~~~~l~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~   88 (112)
                      ++.++++.+++.-+   .|.|.+||+.+-+....+..|.+.+-+++|+++|.       ++++++..|+ ||++.+.+|+
T Consensus       135 lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-------llATASeKGTVIRVf~v~~G~  207 (391)
T KOG2110|consen  135 LSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-------LLATASEKGTVIRVFSVPEGQ  207 (391)
T ss_pred             eccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-------EEEEeccCceEEEEEEcCCcc
Confidence            44445556887665   39999999998888889999999999999999995       8889998886 7899999999


Q ss_pred             eEEEEecCC---CEEEEEEcCCCcEe
Q 033738           89 LLKTIDVKF---PIFSMVRGKKGFAV  111 (112)
Q Consensus        89 ~~~~~~~~~---~v~~~~~~~~~~~~  111 (112)
                      .+..++-+.   .+.+++|+|++++|
T Consensus       208 kl~eFRRG~~~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  208 KLYEFRRGTYPVSIYSLSFSPDSQFL  233 (391)
T ss_pred             EeeeeeCCceeeEEEEEEECCCCCeE
Confidence            999987654   78999999999876

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=2e-12  Score=77.56  Aligned_cols=97  Identities=15%  Similarity=0.163  Sum_probs=76.6

Q ss_pred             CCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            7 SYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      ..|.. +.|.+||..+++++  +..+.+||.+++..+.......+.+..+.||||++       ++.++.-|+..++|+.
T Consensus       196 ~pVts-mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd-------~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  196 NPVTS-MQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD-------VLFAATCDAVFRLWQE  267 (445)
T ss_pred             ceeeE-EEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC-------EEEEecccceeeeehh
Confidence            57776 99999999999998  69999999998875554444566788999999996       7779999999999965


Q ss_pred             CC-CceEEEEecCCCEEEEEEcCCCcEe
Q 033738           85 ST-PELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        85 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      .. ..+.+..-....|+..+|+|+|..+
T Consensus       268 ~q~wt~erw~lgsgrvqtacWspcGsfL  295 (445)
T KOG2139|consen  268 NQSWTKERWILGSGRVQTACWSPCGSFL  295 (445)
T ss_pred             cccceecceeccCCceeeeeecCCCCEE
Confidence            43 3333333344489999999999865

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.46  E-value=3.4e-13  Score=85.94  Aligned_cols=102  Identities=20%  Similarity=0.251  Sum_probs=85.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-C-----CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-S-----NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL   75 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~-----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   75 (112)
                      |.||...|++ ++.+|+|+++++++ .     ..|++|+..+......+..|.-.|+.++|||+++       ++++.+.
T Consensus       521 LYGHGyEv~~-l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~-------~LLsvsR  592 (764)
T KOG1063|consen  521 LYGHGYEVYA-LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGR-------YLLSVSR  592 (764)
T ss_pred             hccCceeEEE-EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCc-------EEEEeec
Confidence            5789999998 99999999999886 2     5799999988777778999999999999999996       8889999


Q ss_pred             CCcEEEEeCCCCce----EEEEecCC-CEEEEEEcCCCcEe
Q 033738           76 DETIKYWDFSTPEL----LKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        76 d~~i~~~~~~~~~~----~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      |+++.+|...+...    ....+.|. .|++..|+|++.++
T Consensus       593 DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F  633 (764)
T KOG1063|consen  593 DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF  633 (764)
T ss_pred             CceEEeeeeecccchhhhhccccccceEEEEcccCccccee
Confidence            99999998654321    22245566 78999999999864

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.45  E-value=1.5e-12  Score=75.29  Aligned_cols=99  Identities=23%  Similarity=0.244  Sum_probs=85.7

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCcee-eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI-SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+...+.. +-|+|-++.|++|. +|.|..||++++... ..-..|...++.++++++..       ++++++.|.+-++
T Consensus       145 t~~skit~-a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-------~FiT~s~Dttakl  216 (327)
T KOG0643|consen  145 TPDSKITS-ALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-------YFITGSKDTTAKL  216 (327)
T ss_pred             CCccceee-eeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-------eEEecccCcccee
Confidence            34456666 88999999999998 899999999997544 45567888999999999994       8899999999999


Q ss_pred             EeCCCCceEEEEecCCCEEEEEEcCCCcE
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVRGKKGFA  110 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  110 (112)
                      ||.++-++++++....|+++.+++|..+.
T Consensus       217 ~D~~tl~v~Kty~te~PvN~aaisP~~d~  245 (327)
T KOG0643|consen  217 VDVRTLEVLKTYTTERPVNTAAISPLLDH  245 (327)
T ss_pred             eeccceeeEEEeeecccccceecccccce
Confidence            99999999999999999999999996544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.43  E-value=7.9e-13  Score=82.74  Aligned_cols=99  Identities=22%  Similarity=0.156  Sum_probs=75.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC----------------------------------------ce
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG----------------------------------------LQ   40 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~----------------------------------------~~   40 (112)
                      +.+|.+.+.+ -+|+|||..|++++ ||.|++|.-...                                        ..
T Consensus       100 v~AH~~A~~~-gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k  178 (737)
T KOG1524|consen  100 ISAHAAAISS-GRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSK  178 (737)
T ss_pred             hhhhhhhhhh-cccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccc
Confidence            4678899997 99999999999998 999999964310                                        01


Q ss_pred             eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCc
Q 033738           41 ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        41 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~  109 (112)
                      +-.++.|++-|.++.|++..+       ++++++.|=..++||.. |..+..-..+. ++++++|+|+..
T Consensus       179 ~i~WkAHDGiiL~~~W~~~s~-------lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~  240 (737)
T KOG1524|consen  179 IIRWRAHDGLVLSLSWSTQSN-------IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKD  240 (737)
T ss_pred             eeEEeccCcEEEEeecCcccc-------ceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccc
Confidence            234456888888889988874       78899999999999975 55555555444 788888888743

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.43  E-value=2.4e-13  Score=86.60  Aligned_cols=80  Identities=19%  Similarity=0.235  Sum_probs=71.1

Q ss_pred             CccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            1 MIRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +|++|.+.|.. ++|+|-. +.|++++ |-+|++||+++++....+.+|.+.|..++|||+|+       .+++.+.||+
T Consensus       672 ~lt~h~eKI~s-lRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr-------~~AtVcKDg~  743 (1012)
T KOG1445|consen  672 ILTIHGEKITS-LRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR-------RIATVCKDGT  743 (1012)
T ss_pred             eeecccceEEE-EEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCc-------ceeeeecCce
Confidence            47889999997 9999964 6778888 99999999999988889999999999999999996       6779999999


Q ss_pred             EEEEeCCCCc
Q 033738           79 IKYWDFSTPE   88 (112)
Q Consensus        79 i~~~~~~~~~   88 (112)
                      +++|+.++++
T Consensus       744 ~rVy~Prs~e  753 (1012)
T KOG1445|consen  744 LRVYEPRSRE  753 (1012)
T ss_pred             EEEeCCCCCC
Confidence            9999987653

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.43  E-value=3.1e-12  Score=81.67  Aligned_cols=94  Identities=28%  Similarity=0.409  Sum_probs=80.1

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.||.+.+.+ +.  -.+..+++|+ |.+|++|+++++..+..+.+|.++|.++...  +.       ++++++.|+.|+
T Consensus       287 l~gh~stv~~-~~--~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~-------~lvsgs~d~~v~  354 (537)
T KOG0274|consen  287 LQGHTSSVRC-LT--IDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP-------LLVSGSYDGTVK  354 (537)
T ss_pred             ecCCCceEEE-EE--ccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC-------EEEEEecCceEE
Confidence            5778887765 43  4456677777 9999999999999999998899999999987  42       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCC
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKK  107 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~  107 (112)
                      +||+.+++++..+..|. +|+++.+.+.
T Consensus       355 VW~~~~~~cl~sl~gH~~~V~sl~~~~~  382 (537)
T KOG0274|consen  355 VWDPRTGKCLKSLSGHTGRVYSLIVDSE  382 (537)
T ss_pred             EEEhhhceeeeeecCCcceEEEEEecCc
Confidence            99999999999999988 9999977663

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.43  E-value=5.7e-13  Score=79.73  Aligned_cols=56  Identities=21%  Similarity=0.226  Sum_probs=45.2

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEec
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP   58 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   58 (112)
                      |.||.+.|.+ ++=+|.. ..+++|+ ||.|++||+....+...+..|.+.|..+++..
T Consensus        62 L~gHrdGV~~-lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~  119 (433)
T KOG0268|consen   62 LDGHRDGVSC-LAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ  119 (433)
T ss_pred             ccccccccch-hhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc
Confidence            5789999998 9999987 7888998 99999999987766667777776666665544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.41  E-value=5.7e-12  Score=74.01  Aligned_cols=98  Identities=21%  Similarity=0.241  Sum_probs=75.3

Q ss_pred             CCcCCCeEEcCCC---CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            7 SYVSSPPAFSNDV---KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         7 ~~v~~~~~~~~~~---~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      +.|.. -++||-.   .++++|. +-.|++.|+++|...+.+.+|...|.++.|+|...      -++++++.||.+++|
T Consensus       144 ~~VYs-hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e------~vLatgsaDg~irlW  216 (397)
T KOG4283|consen  144 GKVYS-HAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSE------WVLATGSADGAIRLW  216 (397)
T ss_pred             ceeeh-hhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCce------eEEEecCCCceEEEE
Confidence            45554 6677742   4556666 78999999999999999999999999999999875      357799999999999


Q ss_pred             eCCCC-ceEEEEecC--------------C-CEEEEEEcCCCcEe
Q 033738           83 DFSTP-ELLKTIDVK--------------F-PIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~~~-~~~~~~~~~--------------~-~v~~~~~~~~~~~~  111 (112)
                      |++.. .|...+..+              . .+..++|+.+|.++
T Consensus       217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l  261 (397)
T KOG4283|consen  217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL  261 (397)
T ss_pred             EeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence            99854 444444332              2 57888998888654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.41  E-value=6.2e-12  Score=74.66  Aligned_cols=101  Identities=20%  Similarity=0.265  Sum_probs=82.8

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC-CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST-GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +|.||...... ++-+|..+++++.+ |.+.++||.+. ...+..|.+|...|+...|..+.        -+++++.|.+
T Consensus       309 ~LtGHd~ELtH-cstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--------~vVSgSDDrT  379 (481)
T KOG0300|consen  309 ILTGHDSELTH-CSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--------RVVSGSDDRT  379 (481)
T ss_pred             cccCcchhccc-cccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC--------ceeecCCCce
Confidence            37889888887 88899999999999 99999999874 34567889999999999998887        4569999999


Q ss_pred             EEEEeCCCC-ceEEEEecCCCEEEEEEcCCCcE
Q 033738           79 IKYWDFSTP-ELLKTIDVKFPIFSMVRGKKGFA  110 (112)
Q Consensus        79 i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  110 (112)
                      +++||+++. .++.++...++++.++.+..+..
T Consensus       380 vKvWdLrNMRsplATIRtdS~~NRvavs~g~~i  412 (481)
T KOG0300|consen  380 VKVWDLRNMRSPLATIRTDSPANRVAVSKGHPI  412 (481)
T ss_pred             EEEeeeccccCcceeeecCCccceeEeecCCce
Confidence            999999874 46777777777777777665544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.41  E-value=4.1e-11  Score=71.26  Aligned_cols=96  Identities=21%  Similarity=0.203  Sum_probs=73.0

Q ss_pred             CcCCCeEEcCCCCEEE-EEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            8 YVSSPPAFSNDVKRLL-VCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~-~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      .+.. +.|+|+++.++ ++. ++.+++||..+++....+..+.. +..++++|+++      .+++++..++.+++||+.
T Consensus        32 ~~~~-l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~------~l~~~~~~~~~l~~~d~~  103 (300)
T TIGR03866        32 RPRG-ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGK------ILYIANEDDNLVTVIDIE  103 (300)
T ss_pred             CCCc-eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCC------EEEEEcCCCCeEEEEECC
Confidence            3565 89999998764 555 79999999998876666654433 46788999985      234456678999999999


Q ss_pred             CCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           86 TPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +++.+..+..+..+..++|+|+|+.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~dg~~l  129 (300)
T TIGR03866       104 TRKVLAEIPVGVEPEGMAVSPDGKIV  129 (300)
T ss_pred             CCeEEeEeeCCCCcceEEECCCCCEE
Confidence            88877777655567889999999865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.40  E-value=3.9e-12  Score=81.25  Aligned_cols=95  Identities=20%  Similarity=0.296  Sum_probs=79.0

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      ++||+..|.. +..-|++ .+++|+ |..|++|.-  ++.++.+.+|...|..+++-++.        .++++++||.|+
T Consensus       136 l~gH~asVWA-v~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~--------~flScsNDg~Ir  203 (745)
T KOG0301|consen  136 LQGHTASVWA-VASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS--------HFLSCSNDGSIR  203 (745)
T ss_pred             cCCcchheee-eeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC--------CeEeecCCceEE
Confidence            6789999987 8888877 777887 999999965  66788999999999999998886        466999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCc
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~  109 (112)
                      +|++ +|+++.....|. -++++...+++.
T Consensus       204 ~w~~-~ge~l~~~~ghtn~vYsis~~~~~~  232 (745)
T KOG0301|consen  204 LWDL-DGEVLLEMHGHTNFVYSISMALSDG  232 (745)
T ss_pred             EEec-cCceeeeeeccceEEEEEEecCCCC
Confidence            9999 688888888877 788888444433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.40  E-value=1.2e-12  Score=80.08  Aligned_cols=86  Identities=21%  Similarity=0.294  Sum_probs=72.0

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      +|...+.+ +++++||++|++|+ |..+.+|+.++.+.+..+++|.+.|.+++|-....       -+++++.|+.+++|
T Consensus       200 ~h~keil~-~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~-------~lys~s~Drsvkvw  271 (479)
T KOG0299|consen  200 GHVKEILT-LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS-------ELYSASADRSVKVW  271 (479)
T ss_pred             cccceeEE-EEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCcc-------ceeeeecCCceEEE
Confidence            67788887 99999999999999 99999999999998999999999999999976552       45599999999999


Q ss_pred             eCCCCceEEEEecCC
Q 033738           83 DFSTPELLKTIDVKF   97 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~   97 (112)
                      ++....-+.++.+|+
T Consensus       272 ~~~~~s~vetlyGHq  286 (479)
T KOG0299|consen  272 SIDQLSYVETLYGHQ  286 (479)
T ss_pred             ehhHhHHHHHHhCCc
Confidence            987654444444443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.40  E-value=2e-12  Score=80.49  Aligned_cols=98  Identities=18%  Similarity=0.329  Sum_probs=80.1

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc--eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL--QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      .+++.. +.+.|||+.|++|+ -.++.+||+....  ....+....-....++.+||.+       ..+++..||.|.+|
T Consensus       465 dnyiRS-ckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDak-------vcFsccsdGnI~vw  536 (705)
T KOG0639|consen  465 DNYIRS-CKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-------VCFSCCSDGNIAVW  536 (705)
T ss_pred             ccceee-eEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-------eeeeeccCCcEEEE
Confidence            356776 89999999999999 6899999997643  2234444334456888999985       66799999999999


Q ss_pred             eCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           83 DFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      |+.+...++.+.+|. .+.++..+++|..|
T Consensus       537 DLhnq~~VrqfqGhtDGascIdis~dGtkl  566 (705)
T KOG0639|consen  537 DLHNQTLVRQFQGHTDGASCIDISKDGTKL  566 (705)
T ss_pred             EcccceeeecccCCCCCceeEEecCCCcee
Confidence            999999999999987 89999999999765

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.37  E-value=8.2e-13  Score=84.24  Aligned_cols=98  Identities=21%  Similarity=0.340  Sum_probs=80.9

Q ss_pred             CCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCC-------ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            7 SYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTG-------LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         7 ~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      ..|.+ +.|.| |.+.|+.++ |+.|++|.+..+       .....++.|...|+.+.|+|-..      ..+++++.|.
T Consensus       628 t~vtD-l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAa------dvLa~asyd~  700 (1012)
T KOG1445|consen  628 TLVTD-LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAA------DVLAVASYDS  700 (1012)
T ss_pred             ceeee-cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhh------hHhhhhhccc
Confidence            35676 88998 668888887 899999998653       23356678889999999999753      2566999999


Q ss_pred             cEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           78 TIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        78 ~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +|++||+.++.....+..|. .+..++|+|+|+.+
T Consensus       701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~  735 (1012)
T KOG1445|consen  701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRI  735 (1012)
T ss_pred             eeeeeehhhhhhhheeccCcCceeEEEECCCCcce
Confidence            99999999998888888887 99999999999865

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=4.6e-12  Score=79.60  Aligned_cols=79  Identities=20%  Similarity=0.311  Sum_probs=67.8

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      |+||++.|.+ +.|+.+|.+|++|+ |..+.+||....+.+..+ ++|...|.++.|-|...  +   .+++++..|..|
T Consensus        46 L~GH~GCVN~-LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn--n---riv~sgAgDk~i  119 (758)
T KOG1310|consen   46 LTGHTGCVNC-LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN--N---RIVLSGAGDKLI  119 (758)
T ss_pred             hccccceecc-eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC--C---eEEEeccCcceE
Confidence            6899999998 99999999999999 799999998776666655 57999999999998753  2   255699999999


Q ss_pred             EEEeCCC
Q 033738           80 KYWDFST   86 (112)
Q Consensus        80 ~~~~~~~   86 (112)
                      +++|+..
T Consensus       120 ~lfdl~~  126 (758)
T KOG1310|consen  120 KLFDLDS  126 (758)
T ss_pred             EEEeccc
Confidence            9999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.35  E-value=9.1e-11  Score=69.79  Aligned_cols=97  Identities=15%  Similarity=0.112  Sum_probs=70.0

Q ss_pred             cCCCeEEcCCCCEEEEE-c-CCeEEEEeCCCCceeeeccccC-----C--ceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            9 VSSPPAFSNDVKRLLVC-T-SNTVSIFSTSTGLQISSLEGHT-----A--PVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~-~-~~~v~~~~~~~~~~~~~~~~~~-----~--~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      ... +.|+|+++.++.+ . ++.+++||+++++....+..+.     .  ....++++|+++      ..+++.+.++.+
T Consensus       159 ~~~-~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~------~~~~~~~~~~~i  231 (300)
T TIGR03866       159 PRF-AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK------TAFVALGPANRV  231 (300)
T ss_pred             ccE-EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC------EEEEEcCCCCeE
Confidence            344 7899999988655 4 7999999999887655543211     1  224678999985      123344556789


Q ss_pred             EEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      .+||.++++.......+..+.+++|+|+|+++|
T Consensus       232 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  264 (300)
T TIGR03866       232 AVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLL  264 (300)
T ss_pred             EEEECCCCcEEEEEEeCCCcceEEECCCCCEEE
Confidence            999999888776665555888999999998774

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=3.9e-12  Score=72.85  Aligned_cols=100  Identities=20%  Similarity=0.296  Sum_probs=78.5

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC---ceeeeccccCCceEEEEEe-cCCCCccceeEEEEeeecCC
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG---LQISSLEGHTAPVTTVIVV-PASTPATKILSYCWTASLDE   77 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~d~   77 (112)
                      ++|.+.|.. ....--|++|++++ |++|+++..+..   +.+..+.+|.++|..++|. |.-.      .++++++.|+
T Consensus         8 t~H~D~IHd-a~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G------~iLAScsYDg   80 (299)
T KOG1332|consen    8 TQHEDMIHD-AQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG------TILASCSYDG   80 (299)
T ss_pred             hhhhhhhhH-hhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC------cEeeEeecCc
Confidence            568888887 77777899999998 999999998763   4567889999999999995 4432      4888999999


Q ss_pred             cEEEEeCCCCceEEE--EecCC-CEEEEEEcCCCc
Q 033738           78 TIKYWDFSTPELLKT--IDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        78 ~i~~~~~~~~~~~~~--~~~~~-~v~~~~~~~~~~  109 (112)
                      .+.+|...+|+-.+.  ...|. .|++++|.|.+.
T Consensus        81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey  115 (299)
T KOG1332|consen   81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY  115 (299)
T ss_pred             eEEEEecCCCchhhhhhhhhhcccceeeccccccc
Confidence            999999988743322  23344 889998888654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=1.4e-11  Score=75.59  Aligned_cols=94  Identities=21%  Similarity=0.212  Sum_probs=79.0

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      .+.+.+ +.-+|+|.+|+.|+ .+.+++|.+.+|..+..+..|...++++.|+.|+.       ++++++.||.+.+|.+
T Consensus        81 Pg~v~a-l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs-------~iiTgskDg~V~vW~l  152 (476)
T KOG0646|consen   81 PGPVHA-LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS-------HIITGSKDGAVLVWLL  152 (476)
T ss_pred             ccceee-eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc-------EEEecCCCccEEEEEE
Confidence            356776 88999999999998 89999999999998899999999999999999994       7889999999999975


Q ss_pred             C---------CCceEEEEecCC-CEEEEEEcCC
Q 033738           85 S---------TPELLKTIDVKF-PIFSMVRGKK  107 (112)
Q Consensus        85 ~---------~~~~~~~~~~~~-~v~~~~~~~~  107 (112)
                      .         +-+++..+..|. +|+++...+.
T Consensus       153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~G  185 (476)
T KOG0646|consen  153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSG  185 (476)
T ss_pred             EeecccccCCCccceeeeccCcceeEEEEecCC
Confidence            3         234566677776 8888876554

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.34  E-value=3.7e-13  Score=87.64  Aligned_cols=98  Identities=18%  Similarity=0.297  Sum_probs=89.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |.||.+.|.| ..+...|.++++|+ |..+++|...++.++..+.+|.+.++.++.+...       ..+++++.|..|+
T Consensus       186 LlgH~naVyc-a~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-------~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  186 LLGHRNAVYC-AIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-------TMIAAASNDKVIR  257 (1113)
T ss_pred             HHhhhhheee-eeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-------hhhhhcccCceEE
Confidence            4689999998 99999999999999 7999999999999999999999999999988776       3677999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCC
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKK  107 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~  107 (112)
                      +|.+.++.++..+.+|. .|++++|+|-
T Consensus       258 vWrl~~~~pvsvLrghtgavtaiafsP~  285 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLRGHTGAVTAIAFSPR  285 (1113)
T ss_pred             EEecCCCchHHHHhccccceeeeccCcc
Confidence            99999999999999887 9999999974

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.33  E-value=1.3e-11  Score=80.30  Aligned_cols=75  Identities=23%  Similarity=0.384  Sum_probs=65.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC-CcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD-ETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d-~~i   79 (112)
                      |.||.+.+++ ++|||||++|++++ |++|++||+.++..+..+. -..+...+.++|+++       ++++...| .-|
T Consensus       572 f~gh~nritd-~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD-------~LAT~Hvd~~gI  642 (910)
T KOG1539|consen  572 FWGHGNRITD-MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGD-------FLATVHVDQNGI  642 (910)
T ss_pred             hhccccceee-eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCC-------EEEEEEecCceE
Confidence            5799999998 99999999999999 9999999999998887665 346678999999996       88899888 569


Q ss_pred             EEEeCC
Q 033738           80 KYWDFS   85 (112)
Q Consensus        80 ~~~~~~   85 (112)
                      ++|--.
T Consensus       643 ylWsNk  648 (910)
T KOG1539|consen  643 YLWSNK  648 (910)
T ss_pred             EEEEch
Confidence            999533

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.32  E-value=3.3e-11  Score=73.27  Aligned_cols=106  Identities=16%  Similarity=0.362  Sum_probs=78.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeE------------
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILS------------   68 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------   68 (112)
                      |.|..+.+.. +.+.+++..+++++ |+.+++|++...+....+.+|...|+++.+.....   .+++            
T Consensus       215 LaGs~g~it~-~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~---~vVsgs~DRtiK~WDl  290 (459)
T KOG0288|consen  215 LAGSLGNITS-IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHS---RVVSGSADRTIKLWDL  290 (459)
T ss_pred             hhccCCCcce-eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcccc---ceeeccccchhhhhhh
Confidence            4566677887 99999998888887 99999999999888889999998888887765442   1111            


Q ss_pred             -----------------------EEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           69 -----------------------YCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        69 -----------------------~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                                             .++++-.|+.|++||.+.+.+....+.+..|.++..+++|..+
T Consensus       291 ~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~l  356 (459)
T KOG0288|consen  291 QKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLEL  356 (459)
T ss_pred             hhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEE
Confidence                                   2344555667777777777777777766677777777777544

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.32  E-value=2.2e-11  Score=74.73  Aligned_cols=102  Identities=25%  Similarity=0.283  Sum_probs=84.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCcee----ee------------c--cccCCceEEEEEecCCCC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI----SS------------L--EGHTAPVTTVIVVPASTP   62 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~----~~------------~--~~~~~~v~~~~~~~~~~~   62 (112)
                      +..|.-.+.+ +.++||..+.++++ +++|.-|++.+++..    ..            .  +.|...+.+++.+++++ 
T Consensus       138 ~~~H~~s~~~-vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-  215 (479)
T KOG0299|consen  138 IGKHQLSVTS-VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-  215 (479)
T ss_pred             eccccCcceE-EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence            3568888887 99999999999999 999999998776522    00            0  25667889999999996 


Q ss_pred             ccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           63 ATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        63 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                            |+++++.|..+.+|+.++.+.+..+..|. .|.+++|-.....+
T Consensus       216 ------ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~l  259 (479)
T KOG0299|consen  216 ------YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSEL  259 (479)
T ss_pred             ------EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccce
Confidence                  99999999999999999999999999888 89999886554443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.32  E-value=3.7e-11  Score=70.68  Aligned_cols=102  Identities=12%  Similarity=0.121  Sum_probs=82.0

Q ss_pred             CCCCCcCCCeEEcCCCCE-EEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            4 GGRSYVSSPPAFSNDVKR-LLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~-l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      +|.-.|.. +-|-|-..- +.+++ |.++++||.++.+....|+ -++.|...+++|-..   .- ++++++..+..+++
T Consensus        99 ~Hky~iss-~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~---sH-cLiA~gtr~~~VrL  172 (397)
T KOG4283|consen   99 GHKYAISS-AIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAM---SH-CLIAAGTRDVQVRL  172 (397)
T ss_pred             cceeeeee-eEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhh---cc-eEEEEecCCCcEEE
Confidence            56667776 889986554 44556 9999999999887666665 456688888988642   11 36789999999999


Q ss_pred             EeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .|+.+|.....+.+|. .|.++.|+|..+++
T Consensus       173 CDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~v  203 (397)
T KOG4283|consen  173 CDIASGSFSHTLSGHRDGVLAVEWSPSSEWV  203 (397)
T ss_pred             EeccCCcceeeeccccCceEEEEeccCceeE
Confidence            9999999999999988 99999999998876

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=3e-11  Score=79.24  Aligned_cols=97  Identities=22%  Similarity=0.243  Sum_probs=82.3

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      +-.+.+ ++++.+|+.++.|+ |-.|++.+.........+.+|.++|.++.++|.+.       ++++..-||.+++||+
T Consensus        96 tlp~r~-~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~-------fLAvss~dG~v~iw~~  167 (933)
T KOG1274|consen   96 TLPIRD-LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN-------FLAVSSCDGKVQIWDL  167 (933)
T ss_pred             eccceE-EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC-------EEEEEecCceEEEEEc
Confidence            445666 89999999999999 89999999988878889999999999999999995       8889999999999999


Q ss_pred             CCCceEEEEec---------CCCEEEEEEcCCCcE
Q 033738           85 STPELLKTIDV---------KFPIFSMVRGKKGFA  110 (112)
Q Consensus        85 ~~~~~~~~~~~---------~~~v~~~~~~~~~~~  110 (112)
                      .++.+..++..         ...+..++|+|+|..
T Consensus       168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~  202 (933)
T KOG1274|consen  168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT  202 (933)
T ss_pred             ccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence            99877665542         125778899999543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=7.8e-11  Score=74.70  Aligned_cols=59  Identities=22%  Similarity=0.263  Sum_probs=52.8

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCC
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAST   61 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (112)
                      ++.||++.|.+ +...|.|.+|++|+ ||+|++|.+.++.++..+.- .+.|.+++|+|...
T Consensus       395 vyrGHtg~Vr~-iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~  454 (733)
T KOG0650|consen  395 VYRGHTGLVRS-ISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSD  454 (733)
T ss_pred             eEeccCCeEEE-EEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCC
Confidence            36799999998 99999999999999 89999999999999887763 46799999999875

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=4.6e-11  Score=68.67  Aligned_cols=79  Identities=18%  Similarity=0.243  Sum_probs=64.4

Q ss_pred             CcCCCeEEcCCCCEEEEE-cCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738            8 YVSSPPAFSNDVKRLLVC-TSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~-~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      .|+. +.+.|..+.++.+ +|+.++.||+++|+..+.+++|...+.++.-.....       -+++++.||++|+||.++
T Consensus       116 eINa-m~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~-------qilsG~EDGtvRvWd~kt  187 (325)
T KOG0649|consen  116 EINA-MWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG-------QILSGAEDGTVRVWDTKT  187 (325)
T ss_pred             ccce-eEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc-------ceeecCCCccEEEEeccc
Confidence            4565 7788876555544 599999999999998899999999999987743332       455999999999999999


Q ss_pred             CceEEEEe
Q 033738           87 PELLKTID   94 (112)
Q Consensus        87 ~~~~~~~~   94 (112)
                      ++++.++.
T Consensus       188 ~k~v~~ie  195 (325)
T KOG0649|consen  188 QKHVSMIE  195 (325)
T ss_pred             cceeEEec
Confidence            99988775

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.31  E-value=6.9e-12  Score=72.54  Aligned_cols=69  Identities=26%  Similarity=0.290  Sum_probs=63.3

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      .+.. +++-||++.+++++ |+.+++|..++.+++..++-|.+.|++++|+|+..       ++++++.|.+|.+|++
T Consensus       253 Gv~g-vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-------lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  253 GVSG-VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-------LMAAASKDARISLWKL  322 (323)
T ss_pred             Cccc-eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-------hhhhccCCceEEeeec
Confidence            3555 88999999999999 99999999999999999999999999999999974       7889999999999986

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=6.5e-11  Score=74.46  Aligned_cols=101  Identities=17%  Similarity=0.164  Sum_probs=70.5

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc----CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC--
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT----SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD--   76 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d--   76 (112)
                      ..|...+.. ++|+|||+.|+..+    +..|++||+.+++. ..+....+.+...+|+|+++   +++   ++.+.+  
T Consensus       198 t~~~~~v~~-p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~---~la---~~~~~~g~  269 (435)
T PRK05137        198 TDGSSLVLT-PRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGR---KVV---MSLSQGGN  269 (435)
T ss_pred             ecCCCCeEe-eEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCC---EEE---EEEecCCC
Confidence            445667776 99999999988765    36899999988753 44444555667889999995   232   344444  


Q ss_pred             CcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           77 ETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ..|++||+.++................|+|||+.+
T Consensus       270 ~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i  304 (435)
T PRK05137        270 TDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQI  304 (435)
T ss_pred             ceEEEEECCCCceEEccCCCCccCceeEcCCCCEE
Confidence            45888899877654433333356678999999865

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.31  E-value=1.2e-11  Score=79.18  Aligned_cols=97  Identities=23%  Similarity=0.351  Sum_probs=76.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc----eeeeccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL----QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      |++|.-.|.. ++|||||++|++.+ |.++.+|......    .....+.|..-|+.+.|+|++.       +++|+++|
T Consensus       568 L~~HsLTVT~-l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-------~FaTaSRD  639 (764)
T KOG1063|consen  568 LEGHSLTVTR-LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-------YFATASRD  639 (764)
T ss_pred             ecccceEEEE-EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-------eeEEecCC
Confidence            6789889998 99999999999999 9999999875321    2234677888899999999996       78999999


Q ss_pred             CcEEEEeCCCC--ceEEE---EecCCCEEEEEEcC
Q 033738           77 ETIKYWDFSTP--ELLKT---IDVKFPIFSMVRGK  106 (112)
Q Consensus        77 ~~i~~~~~~~~--~~~~~---~~~~~~v~~~~~~~  106 (112)
                      ..+.+|...+.  +.+..   .+....|+++++.|
T Consensus       640 K~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  640 KKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             ceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence            99999988766  33322   23334788887765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1.3e-10  Score=73.00  Aligned_cols=100  Identities=11%  Similarity=0.036  Sum_probs=65.7

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-C---CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEe-eecCC
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT-ASLDE   77 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~d~   77 (112)
                      ..|...+.. ++|+|||+.+++.+ +   ..|++||+.+++.. .+....+.....+|+|+++       .++. ...++
T Consensus       200 t~~~~~v~~-p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g~~~~~~wSPDG~-------~La~~~~~~g  270 (429)
T PRK01742        200 NRSSQPLMS-PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVASFRGHNGAPAFSPDGS-------RLAFASSKDG  270 (429)
T ss_pred             ccCCCcccc-ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEecCCCccCceeECCCCC-------EEEEEEecCC
Confidence            456667777 99999999998776 2   47999999877532 2222222334689999995       3333 34566


Q ss_pred             cE--EEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           78 TI--KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        78 ~i--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ..  ++||..++...........+.++.|+|+|+.+
T Consensus       271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i  306 (429)
T PRK01742        271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSI  306 (429)
T ss_pred             cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEE
Confidence            54  45577666554333333367889999999865

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.30  E-value=2.5e-11  Score=71.14  Aligned_cols=98  Identities=17%  Similarity=0.151  Sum_probs=74.8

Q ss_pred             cCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCc-----------------------------------------
Q 033738            3 RGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGL-----------------------------------------   39 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~-----------------------------------------   39 (112)
                      -+|...|.. ++|..++ +.+++.+ ||++++||++..+                                         
T Consensus       193 IAHDKEV~D-Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL  271 (364)
T KOG0290|consen  193 IAHDKEVYD-IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL  271 (364)
T ss_pred             EecCcceeE-EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence            358889998 9999876 5677777 9999999997321                                         


Q ss_pred             -------eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc------eEEEEecCCCEEEEEEcC
Q 033738           40 -------QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE------LLKTIDVKFPIFSMVRGK  106 (112)
Q Consensus        40 -------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~------~~~~~~~~~~v~~~~~~~  106 (112)
                             .+..+..|++.|+.++|.|...      +.+.+++.|.+..+||+.+..      ++........|+.+.|++
T Consensus       272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~------~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~  345 (364)
T KOG0290|consen  272 DIRVPCTPVARLRNHQASVNGIAWAPHSS------SHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSS  345 (364)
T ss_pred             EecCCCcceehhhcCcccccceEecCCCC------ceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecc
Confidence                   2456678999999999999886      355599999999999987532      233334455888899985


Q ss_pred             C
Q 033738          107 K  107 (112)
Q Consensus       107 ~  107 (112)
                      .
T Consensus       346 ~  346 (364)
T KOG0290|consen  346 S  346 (364)
T ss_pred             c
Confidence            3

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.29  E-value=4.2e-11  Score=77.11  Aligned_cols=91  Identities=20%  Similarity=0.266  Sum_probs=72.5

Q ss_pred             CcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738            8 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP   87 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~   87 (112)
                      .|.. ++|.|||..|+.+.+..+.+||.+.|..+..+++|...|.+++|+.+|.       .+++|+.|..+.+|+..- 
T Consensus        14 ci~d-~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-------rFASG~aDK~VI~W~~kl-   84 (1081)
T KOG1538|consen   14 CIND-IAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-------RFASGSADKSVIIWTSKL-   84 (1081)
T ss_pred             chhe-eEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCc-------eeccCCCceeEEEecccc-
Confidence            5777 9999999999888889999999999999999999999999999999996       788999999999998542 


Q ss_pred             ceEEEEecCCCEEEEEEcCC
Q 033738           88 ELLKTIDVKFPIFSMVRGKK  107 (112)
Q Consensus        88 ~~~~~~~~~~~v~~~~~~~~  107 (112)
                      +-+........++++.|+|-
T Consensus        85 EG~LkYSH~D~IQCMsFNP~  104 (1081)
T KOG1538|consen   85 EGILKYSHNDAIQCMSFNPI  104 (1081)
T ss_pred             cceeeeccCCeeeEeecCch
Confidence            11122222235555555553

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=4.8e-11  Score=68.49  Aligned_cols=100  Identities=17%  Similarity=0.139  Sum_probs=77.5

Q ss_pred             ccCCCCCcCCCeEEcC--CCCEEEEEc-CCeEEEEeCCCCc--eeeeccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738            2 IRGGRSYVSSPPAFSN--DVKRLLVCT-SNTVSIFSTSTGL--QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~--~~~~l~~~~-~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      |.||.++|.. ++|..  -|..|++++ |+.|.+|.-..++  .......|...|++++|.|.+.    - ..+++++.|
T Consensus        52 L~Gh~GPVwq-v~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey----g-l~LacasSD  125 (299)
T KOG1332|consen   52 LTGHSGPVWK-VAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY----G-LLLACASSD  125 (299)
T ss_pred             ecCCCCCeeE-EeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeeccccccc----c-eEEEEeeCC
Confidence            6899999998 99865  589999999 9999999987663  2345567899999999999873    1 257899999


Q ss_pred             CcEEEEeCCCC--ceEEE-EecCC-CEEEEEEcCC
Q 033738           77 ETIKYWDFSTP--ELLKT-IDVKF-PIFSMVRGKK  107 (112)
Q Consensus        77 ~~i~~~~~~~~--~~~~~-~~~~~-~v~~~~~~~~  107 (112)
                      |.|.+.+++..  ..... ...|. .|++++|.|.
T Consensus       126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa  160 (299)
T KOG1332|consen  126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA  160 (299)
T ss_pred             CcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence            99999988753  22222 23344 8999999986

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=4.6e-11  Score=76.20  Aligned_cols=99  Identities=14%  Similarity=0.224  Sum_probs=78.0

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc----c----cCCceEEEEEecCCCCccceeEEEEeeec
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE----G----HTAPVTTVIVVPASTPATKILSYCWTASL   75 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~----~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   75 (112)
                      .++++.+ ++|+|++..+++|+ ||.|++||..++......+    .    ...-|+++.+-.++        .+++|..
T Consensus       153 q~sRvLs-lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--------tI~sgDS  223 (691)
T KOG2048|consen  153 QKSRVLS-LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--------TIASGDS  223 (691)
T ss_pred             ccceEEE-EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--------cEEEecC
Confidence            3577887 99999999999999 9999999998876554221    1    22235666665555        6679999


Q ss_pred             CCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           76 DETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        76 d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      .|.+.+||...|..++.+..+. .|.+++-.++++++|
T Consensus       224 ~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf  261 (691)
T KOG2048|consen  224 AGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF  261 (691)
T ss_pred             CceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence            9999999999999888888776 899999988877664

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=5.5e-11  Score=70.63  Aligned_cols=101  Identities=16%  Similarity=0.196  Sum_probs=76.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC----c---eeeec----cccCCceEEEEEecCCCCccceeEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG----L---QISSL----EGHTAPVTTVIVVPASTPATKILSY   69 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~----~---~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~   69 (112)
                      |+||...|.. ++|+++.+.+++.+ ||+.++||++-.    +   .++..    ....+....++++|.+.       .
T Consensus       274 LkGH~saV~~-~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-------~  345 (420)
T KOG2096|consen  274 LKGHQSAVLA-AAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-------S  345 (420)
T ss_pred             eccchhheee-eeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-------E
Confidence            6899999998 99999999999999 999999998631    1   11111    12234445889999995       2


Q ss_pred             EEeeecCCcEEEEeCCCCceEEEEec-CC-CEEEEEEcCCCcEe
Q 033738           70 CWTASLDETIKYWDFSTPELLKTIDV-KF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        70 ~~~~~~d~~i~~~~~~~~~~~~~~~~-~~-~v~~~~~~~~~~~~  111 (112)
                       ++.+....++++..++|+....+.. |. .+.+++|+++|+++
T Consensus       346 -lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~  388 (420)
T KOG2096|consen  346 -LAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYI  388 (420)
T ss_pred             -EEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEE
Confidence             2455566899999988877666543 44 89999999999886

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.5e-10  Score=72.71  Aligned_cols=101  Identities=13%  Similarity=0.122  Sum_probs=67.3

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc----CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT----SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +...+.. ++|+|||+.|+..+    +..+.+|++.+++. ..+....+.....+|+|++.   +++ +......+..|+
T Consensus       197 ~~~~~~~-p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~~~~~~~~SPDG~---~La-~~~~~~g~~~I~  270 (429)
T PRK03629        197 SPQPLMS-PAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGS---KLA-FALSKTGSLNLY  270 (429)
T ss_pred             CCCceee-eEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCCCCcCCeEECCCCC---EEE-EEEcCCCCcEEE
Confidence            3445666 99999999988654    35799999987753 33332333345689999995   232 222222334699


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +||+.+++.......+..+..+.|+|+|+.|
T Consensus       271 ~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I  301 (429)
T PRK03629        271 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNL  301 (429)
T ss_pred             EEECCCCCEEEccCCCCCcCceEECCCCCEE
Confidence            9999888765554444467789999999865

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.26  E-value=2.9e-11  Score=71.78  Aligned_cols=98  Identities=11%  Similarity=0.158  Sum_probs=73.1

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCC-ceeeeccccCC---ceEEEEEecCCCCccceeEEEEeeec
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTG-LQISSLEGHTA---PVTTVIVVPASTPATKILSYCWTASL   75 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~-~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~   75 (112)
                      +-||.+-|+. +.|.++|+.|.+|.  +..|..||++.. .++..+..|..   .--.....|++.       ++++++.
T Consensus       246 lggh~gGvTh-L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-------~LasG~t  317 (406)
T KOG2919|consen  246 LGGHGGGVTH-LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGE-------ILASGDT  317 (406)
T ss_pred             ecccCCCeee-EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCc-------eeeccCC
Confidence            4579999998 99999999999998  799999999864 34445554433   112335567775       7889999


Q ss_pred             CCcEEEEeCCC-CceEEEEecCC-CEEEEEEcCC
Q 033738           76 DETIKYWDFST-PELLKTIDVKF-PIFSMVRGKK  107 (112)
Q Consensus        76 d~~i~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~  107 (112)
                      ||.|++||+++ |..+..+..+. .++.++++|-
T Consensus       318 dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~  351 (406)
T KOG2919|consen  318 DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI  351 (406)
T ss_pred             CccEEEEecCCCCCcccccccccccccceecCcc
Confidence            99999999987 66566655554 6777777764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=4.2e-10  Score=66.49  Aligned_cols=100  Identities=18%  Similarity=0.242  Sum_probs=74.9

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC----ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG----LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      .+|.+.+.+ +.|.+-|+++++++ |+++++||.+..    .+....+.|.+.|..+.|.+..-  .   -.+++++.|+
T Consensus        10 s~h~Dlihd-Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf--G---qvvA~cS~Dr   83 (361)
T KOG2445|consen   10 SGHKDLIHD-VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF--G---QVVATCSYDR   83 (361)
T ss_pred             cCCcceeee-eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc--c---ceEEEEecCC
Confidence            578888998 99999999999998 999999996432    45567788999999999965431  0   2678999999


Q ss_pred             cEEEEeCCC------C-c--eEEEEecCC-CEEEEEEcCCC
Q 033738           78 TIKYWDFST------P-E--LLKTIDVKF-PIFSMVRGKKG  108 (112)
Q Consensus        78 ~i~~~~~~~------~-~--~~~~~~~~~-~v~~~~~~~~~  108 (112)
                      ++.+|.-..      + +  ...++.... .|+.+.|.|.-
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h  124 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH  124 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh
Confidence            999996521      1 1  122333333 89999998853

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.25  E-value=2e-10  Score=67.51  Aligned_cols=97  Identities=16%  Similarity=0.231  Sum_probs=73.6

Q ss_pred             CCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCCce---eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            5 GRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQ---ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         5 h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +...++. ..|+. |-+++.+++ |.++-+||++++..   ..++-.|..+|..++|...+.      ..+++.+.||.+
T Consensus       149 ~~aPlTS-FDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~------~~FASvgaDGSv  221 (364)
T KOG0290|consen  149 FCAPLTS-FDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSR------DVFASVGADGSV  221 (364)
T ss_pred             cCCcccc-cccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCcc------ceEEEecCCCcE
Confidence            3455665 88875 557888888 99999999998633   467778999999999998664      377899999999


Q ss_pred             EEEeCCCCceEEEEec----CCCEEEEEEcCCC
Q 033738           80 KYWDFSTPELLKTIDV----KFPIFSMVRGKKG  108 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~  108 (112)
                      |++|++..+....+-.    +.+...++|++..
T Consensus       222 RmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD  254 (364)
T KOG0290|consen  222 RMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD  254 (364)
T ss_pred             EEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence            9999997655444322    2267777887654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=2.8e-11  Score=73.33  Aligned_cols=74  Identities=20%  Similarity=0.273  Sum_probs=64.2

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK   91 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~   91 (112)
                      ++++++|..+++++ ||.+|+|+..+...+.....|.+.|.++.|+||+.       .+++.+.| ..++|+..+|.++.
T Consensus       150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk-------~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGK-------FLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCc-------EEEEecCC-ceEEEEeccCchhh
Confidence            89999999999998 99999999777666667778899999999999995       67788888 99999999996665


Q ss_pred             EEe
Q 033738           92 TID   94 (112)
Q Consensus        92 ~~~   94 (112)
                      ...
T Consensus       222 ~~t  224 (398)
T KOG0771|consen  222 RKT  224 (398)
T ss_pred             hcC
Confidence            544

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.24  E-value=1.5e-10  Score=67.92  Aligned_cols=102  Identities=19%  Similarity=0.257  Sum_probs=76.7

Q ss_pred             CCCCCcCCCeEEcCCCCE-EEEEc-CCeEEEEeCCC-CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            4 GGRSYVSSPPAFSNDVKR-LLVCT-SNTVSIFSTST-GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~-l~~~~-~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +|...|.. +.|+|+.+. |++++ |+.|++||.+. ..++..+.+|...|+++.|+|...      -++++++.|..+.
T Consensus       212 AHgq~vrd-lDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd------qLiLs~~SDs~V~  284 (370)
T KOG1007|consen  212 AHGQRVRD-LDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD------QLILSGGSDSAVN  284 (370)
T ss_pred             hhcceeee-ccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc------eEEEecCCCceeE
Confidence            57777887 999999865 56666 79999999976 456688899999999999999765      2566999999999


Q ss_pred             EEeCCCC-----------------------------ceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           81 YWDFSTP-----------------------------ELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~-----------------------------~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      +|....-                             ..+.++..|. .|++++|+....++|
T Consensus       285 Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF  346 (370)
T KOG1007|consen  285 LSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF  346 (370)
T ss_pred             EEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence            9853210                             0123444454 899999997766654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=2.7e-10  Score=71.69  Aligned_cols=102  Identities=14%  Similarity=0.123  Sum_probs=67.7

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-C---CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      .+...+.. ++|+|||+.|+..+ +   ..+++||+.+++. ..+....+.....+|+|+++   +++ +..+...+..|
T Consensus       201 ~~~~~v~~-p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~~g~~~~~~~SpDG~---~l~-~~~s~~g~~~I  274 (433)
T PRK04922        201 RSAEPILS-PAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-ELVASFRGINGAPSFSPDGR---RLA-LTLSRDGNPEI  274 (433)
T ss_pred             cCCCcccc-ccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EEeccCCCCccCceECCCCC---EEE-EEEeCCCCceE
Confidence            44556776 99999999998776 2   4799999987753 33333334445789999995   332 22222334469


Q ss_pred             EEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ++||+.+++.............++|+|+|+.+
T Consensus       275 y~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l  306 (433)
T PRK04922        275 YVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSI  306 (433)
T ss_pred             EEEECCCCCeEECccCCCCccceEECCCCCEE
Confidence            99999888754433322345678999999865

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=7.5e-10  Score=70.88  Aligned_cols=102  Identities=13%  Similarity=0.167  Sum_probs=80.2

Q ss_pred             ccCCCC-CcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRS-YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~-~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.|+.+ .+.. ++|++.++++-++.+|.|..||+.++++........+.++.++.+|.+.       .++.++.||.++
T Consensus        64 i~g~~drsIE~-L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~-------~l~IgcddGvl~  135 (691)
T KOG2048|consen   64 IHGPEDRSIES-LAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENT-------ILAIGCDDGVLY  135 (691)
T ss_pred             EecCCCCceee-EEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccc-------eEEeecCCceEE
Confidence            456554 4555 9999656555444599999999999999999999999999999999984       667888999888


Q ss_pred             EEeCCCCceEEEEec---CCCEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDV---KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~  111 (112)
                      .++...+........   .+.+.++.|+|++..+
T Consensus       136 ~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i  169 (691)
T KOG2048|consen  136 DFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI  169 (691)
T ss_pred             EEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence            888877766544432   3489999999998754

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=7.8e-10  Score=63.25  Aligned_cols=94  Identities=18%  Similarity=0.185  Sum_probs=76.3

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      ..|.. +++.|.|++|++|. |.++-+||++.++.+..+..|...|.++.|+|...       |+++++.|..|++-|+.
T Consensus       232 savaa-v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~-------yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  232 SAVAA-VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-------YLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             ceeEE-EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce-------EEEEecccceEEEeecc
Confidence            45665 89999999999998 99999999999999999999999999999999985       88899999999999886


Q ss_pred             CC----ceEEEEecCC-CEEEEEEcCCC
Q 033738           86 TP----ELLKTIDVKF-PIFSMVRGKKG  108 (112)
Q Consensus        86 ~~----~~~~~~~~~~-~v~~~~~~~~~  108 (112)
                      ..    .++.....|. .+-.+.|+|..
T Consensus       304 gdla~el~~~vv~ehkdk~i~~rwh~~d  331 (350)
T KOG0641|consen  304 GDLAHELPIMVVAEHKDKAIQCRWHPQD  331 (350)
T ss_pred             cchhhcCceEEEEeccCceEEEEecCcc
Confidence            31    2233333343 56667888764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.22  E-value=6.1e-11  Score=71.67  Aligned_cols=84  Identities=24%  Similarity=0.346  Sum_probs=70.3

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      -||-..+.+ ++|+||+++++++. |+.|++-.......+..+ .+|..-|..++.-++.        .+++++.|++++
T Consensus       148 lGhvSml~d-VavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--------~LlS~sGD~tlr  218 (390)
T KOG3914|consen  148 LGHVSMLLD-VAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--------LLLSGSGDKTLR  218 (390)
T ss_pred             hhhhhhhhe-eeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--------eeeecCCCCcEE
Confidence            578889998 99999999999999 999999877655455544 4688889999987776        467999999999


Q ss_pred             EEeCCCCceEEEEec
Q 033738           81 YWDFSTPELLKTIDV   95 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~   95 (112)
                      +||+.+|+++.++..
T Consensus       219 ~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  219 LWDITSGKLLDTCDL  233 (390)
T ss_pred             EEecccCCcccccch
Confidence            999999998866654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=2.2e-11  Score=81.14  Aligned_cols=100  Identities=7%  Similarity=-0.038  Sum_probs=78.4

Q ss_pred             cCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            3 RGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      ..|++.|.. +.|++.. +.|++|+ +|.|.+||++..+......  .....|.+++|+..-.      -++++++.+|+
T Consensus       113 ~~h~G~V~g-LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq------hILAS~s~sg~  185 (1049)
T KOG0307|consen  113 SKHTGPVLG-LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS------HILASGSPSGR  185 (1049)
T ss_pred             cccCCceee-eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh------HHhhccCCCCC
Confidence            569999998 9999976 5888888 8999999998754433331  1356789999987652      25568999999


Q ss_pred             EEEEeCCCCceEEEEecCC---CEEEEEEcCCCc
Q 033738           79 IKYWDFSTPELLKTIDVKF---PIFSMVRGKKGF  109 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~  109 (112)
                      ..+||++..+.+..+..+.   .+..+.|+|+..
T Consensus       186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a  219 (1049)
T KOG0307|consen  186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA  219 (1049)
T ss_pred             ceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence            9999999888777776655   488999999874

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=3.3e-10  Score=66.69  Aligned_cols=93  Identities=18%  Similarity=0.168  Sum_probs=72.5

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      .+.|.. +.|+|.++.|+.++ ||++++||..... +.....+++++.+++|.++.        .+++++.||.|+.+|+
T Consensus        13 ~d~IS~-v~f~~~~~~LLvssWDgslrlYdv~~~~-l~~~~~~~~plL~c~F~d~~--------~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen   13 EDGISS-VKFSPSSSDLLVSSWDGSLRLYDVPANS-LKLKFKHGAPLLDCAFADES--------TIVTGGLDGQVRRYDL   82 (323)
T ss_pred             hhceee-EEEcCcCCcEEEEeccCcEEEEeccchh-hhhheecCCceeeeeccCCc--------eEEEeccCceEEEEEe
Confidence            456776 99999887777777 9999999998664 44444588999999998865        5669999999999999


Q ss_pred             CCCceEEEEecCCCEEEEEEcCCC
Q 033738           85 STPELLKTIDVKFPIFSMVRGKKG  108 (112)
Q Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~  108 (112)
                      .++.....-.+..++.++.+++..
T Consensus        83 n~~~~~~igth~~~i~ci~~~~~~  106 (323)
T KOG1036|consen   83 NTGNEDQIGTHDEGIRCIEYSYEV  106 (323)
T ss_pred             cCCcceeeccCCCceEEEEeeccC
Confidence            988765554444588888887543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.21  E-value=6.3e-10  Score=63.13  Aligned_cols=78  Identities=24%  Similarity=0.351  Sum_probs=58.2

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc----CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec------
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT----SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL------   75 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------   75 (112)
                      ...+.. +.|+|+|++++.++    .|.+.+||.++.+.+.... + ..+..++|+|+|+       +++++..      
T Consensus       100 ~~~~n~-i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr-------~~~ta~t~~r~~~  169 (194)
T PF08662_consen  100 TQPRNT-ISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGR-------YLATATTSPRLRV  169 (194)
T ss_pred             CCCceE-EEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCC-------EEEEEEeccceec
Confidence            455666 99999999999886    3789999999877766654 2 3468999999996       5555543      


Q ss_pred             CCcEEEEeCCCCceEEEEe
Q 033738           76 DETIKYWDFSTPELLKTID   94 (112)
Q Consensus        76 d~~i~~~~~~~~~~~~~~~   94 (112)
                      |..+++|++. |+.+....
T Consensus       170 dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  170 DNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             cccEEEEEec-CeEeEecc
Confidence            6788999985 66655443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=4.8e-10  Score=66.04  Aligned_cols=91  Identities=18%  Similarity=0.235  Sum_probs=70.5

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      |..++.+ ++|.+ ...+++|+ |+.|+++|+.+++ ...+..|..++.++..++...       -++++++|++|++||
T Consensus        53 ~~~plL~-c~F~d-~~~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~-------~vIsgsWD~~ik~wD  122 (323)
T KOG1036|consen   53 HGAPLLD-CAFAD-ESTIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVG-------CVISGSWDKTIKFWD  122 (323)
T ss_pred             cCCceee-eeccC-CceEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCC-------eEEEcccCccEEEEe
Confidence            6778887 88876 45566777 9999999999885 556667999999999997663       566999999999999


Q ss_pred             CCCCceEEEEecCCCEEEEEEc
Q 033738           84 FSTPELLKTIDVKFPIFSMVRG  105 (112)
Q Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~  105 (112)
                      .+.......+.....|.++...
T Consensus       123 ~R~~~~~~~~d~~kkVy~~~v~  144 (323)
T KOG1036|consen  123 PRNKVVVGTFDQGKKVYCMDVS  144 (323)
T ss_pred             ccccccccccccCceEEEEecc
Confidence            9875555555555566666543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.19  E-value=3e-11  Score=72.58  Aligned_cols=95  Identities=8%  Similarity=0.139  Sum_probs=77.1

Q ss_pred             CCCeEEcCCCCEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738           10 SSPPAFSNDVKRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP   87 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~   87 (112)
                      .. ++|+|++-.+.+++ |..++.+|++.- .++....+|.+.|..++|+|.|.       -+++++.|.+|++|....+
T Consensus       233 N~-IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~-------EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  233 NT-ICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ-------EFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             cc-eecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc-------hhccccccceEEEeecCCC
Confidence            44 89999777777888 899999998763 45677788999999999999995       5669999999999999877


Q ss_pred             ceEEEEec--CCCEEEEEEcCCCcEeC
Q 033738           88 ELLKTIDV--KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        88 ~~~~~~~~--~~~v~~~~~~~~~~~~~  112 (112)
                      ..-.....  .+.|.++.|+-|.++++
T Consensus       305 ~SRdiYhtkRMq~V~~Vk~S~Dskyi~  331 (433)
T KOG0268|consen  305 HSRDIYHTKRMQHVFCVKYSMDSKYII  331 (433)
T ss_pred             cchhhhhHhhhheeeEEEEeccccEEE
Confidence            65444332  23899999999988874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=6.4e-10  Score=67.63  Aligned_cols=100  Identities=13%  Similarity=0.176  Sum_probs=77.8

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeec-------------------------------------
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL-------------------------------------   44 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~-------------------------------------   44 (112)
                      ..|...|.+ +.|+|||+.|++.+ | ..++|+.+++..+...                                     
T Consensus       183 ~~~~~eV~D-L~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~  260 (398)
T KOG0771|consen  183 IAHHAEVKD-LDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRL  260 (398)
T ss_pred             HhhcCcccc-ceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeE
Confidence            457889998 99999999999998 6 9999999876110000                                     


Q ss_pred             ------c-----------ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEec-CC-CEEEEEEc
Q 033738           45 ------E-----------GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDV-KF-PIFSMVRG  105 (112)
Q Consensus        45 ------~-----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~-~v~~~~~~  105 (112)
                            .           .....+.+++.+++|+       +++-++.||.+.+++..+-+++...+. |. .|+.+.|+
T Consensus       261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-------f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~  333 (398)
T KOG0771|consen  261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-------FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFS  333 (398)
T ss_pred             EEeeeeccccccchhhhhhccCcceeEEEcCCCc-------EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEc
Confidence                  0           0123578899999996       888999999999999988777776654 44 89999999


Q ss_pred             CCCcEe
Q 033738          106 KKGFAV  111 (112)
Q Consensus       106 ~~~~~~  111 (112)
                      |+.+++
T Consensus       334 Pdsr~~  339 (398)
T KOG0771|consen  334 PDSRYL  339 (398)
T ss_pred             CCcCcc
Confidence            998764

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.18  E-value=3.7e-10  Score=66.82  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=66.1

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CC-eEEEEeCCCCceeeeccc--cCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SN-TVSIFSTSTGLQISSLEG--HTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~-~v~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      +.+|...+.+ ++++-+|..+++++ .| -||+||..+|..+..+..  ....+.+++|||+..       +++..+..|
T Consensus       177 I~AH~s~Iac-v~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-------~LavsSdKg  248 (346)
T KOG2111|consen  177 INAHDSDIAC-VALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-------WLAVSSDKG  248 (346)
T ss_pred             EEcccCceeE-EEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-------EEEEEcCCC
Confidence            5789999998 99999999999999 54 579999999988887764  345689999999994       888999999


Q ss_pred             cEEEEeCCC
Q 033738           78 TIKYWDFST   86 (112)
Q Consensus        78 ~i~~~~~~~   86 (112)
                      +++++.++.
T Consensus       249 TlHiF~l~~  257 (346)
T KOG2111|consen  249 TLHIFSLRD  257 (346)
T ss_pred             eEEEEEeec
Confidence            999998764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.17  E-value=3.6e-10  Score=73.36  Aligned_cols=96  Identities=20%  Similarity=0.273  Sum_probs=83.6

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc---cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG---HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      .+++ +++.|..+++++++ |..|++|++++++..+.|++   +++..-.+...|.+       .|+++.+.|.++.++|
T Consensus       598 TlYD-m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg-------iY~atScsdktl~~~D  669 (1080)
T KOG1408|consen  598 TLYD-MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG-------IYLATSCSDKTLCFVD  669 (1080)
T ss_pred             eEEE-eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc-------cEEEEeecCCceEEEE
Confidence            4566 88899999999998 99999999999998888875   45566678888998       4999999999999999


Q ss_pred             CCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           84 FSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        84 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +.+|+++.+..+|+ .|+.+.|.+|=+.|
T Consensus       670 f~sgEcvA~m~GHsE~VTG~kF~nDCkHl  698 (1080)
T KOG1408|consen  670 FVSGECVAQMTGHSEAVTGVKFLNDCKHL  698 (1080)
T ss_pred             eccchhhhhhcCcchheeeeeecccchhh
Confidence            99999999999988 89999999876544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.17  E-value=8.1e-11  Score=71.40  Aligned_cols=76  Identities=24%  Similarity=0.315  Sum_probs=66.0

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|...+.. ++|+||++++++++ |+.+++||+..|.....+..|...+..++|.|-..       ++++-+.|+..+
T Consensus       119 lr~h~~diyd-L~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q-------yv~s~s~dr~~~  190 (434)
T KOG1009|consen  119 LRGHRDDIYD-LAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ-------YVASKSSDRHPE  190 (434)
T ss_pred             ecccccchhh-hhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh-------hhhhhccCcccc
Confidence            4578899998 99999999999999 99999999999998899999999999999999874       677878877666


Q ss_pred             EEeCC
Q 033738           81 YWDFS   85 (112)
Q Consensus        81 ~~~~~   85 (112)
                      .+.+.
T Consensus       191 ~~~~~  195 (434)
T KOG1009|consen  191 GFSAK  195 (434)
T ss_pred             eeeee
Confidence            55543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.17  E-value=6e-11  Score=75.49  Aligned_cols=77  Identities=17%  Similarity=0.262  Sum_probs=66.9

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeee--ccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS--LEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      ..|.+.|.+ +.|-|....|++++ |.+++.||++..+....  +.+|++.|..++|.|...      ..+++|+.|+.+
T Consensus        97 ~aH~nAifD-l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~------~vF~tGgRDg~i  169 (720)
T KOG0321|consen   97 LAHKNAIFD-LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNP------AVFCTGGRDGEI  169 (720)
T ss_pred             ccccceeEe-eccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCC------cceeeccCCCcE
Confidence            468999998 99999667788887 99999999998876655  789999999999999886      578899999999


Q ss_pred             EEEeCCC
Q 033738           80 KYWDFST   86 (112)
Q Consensus        80 ~~~~~~~   86 (112)
                      .+||++.
T Consensus       170 llWD~R~  176 (720)
T KOG0321|consen  170 LLWDCRC  176 (720)
T ss_pred             EEEEEec
Confidence            9999863

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=3.8e-10  Score=69.62  Aligned_cols=97  Identities=21%  Similarity=0.233  Sum_probs=73.2

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCc-eEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAP-VTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      +.|.. ++|+.|++.|+..+ +|.|.+||++...+++.+...++- -+.++.++++.       |+++|+..|.+.+||.
T Consensus       345 G~v~~-~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-------ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  345 GVVSD-FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-------YLATGSDSGIVNIYDG  416 (514)
T ss_pred             cEEee-EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-------eEEeccCcceEEEecc
Confidence            45666 89999998777666 899999999988888877643221 24677778884       8999999999999996


Q ss_pred             CC------CceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           85 ST------PELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        85 ~~------~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .+      .+++..+..-. .|.++.|+|+++.+
T Consensus       417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL  450 (514)
T KOG2055|consen  417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL  450 (514)
T ss_pred             chhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence            53      23444443322 89999999998765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=1.3e-09  Score=68.54  Aligned_cols=100  Identities=15%  Similarity=0.156  Sum_probs=65.5

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      .+.+.+.. ++|+|||+.|+..+  +  ..|.+||+.+++.. .+....+.....+|+|++.   +   ++++.+.++..
T Consensus       193 ~~~~~v~~-p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~---~---la~~~~~~g~~  264 (427)
T PRK02889        193 SSPEPIIS-PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGR---T---LAVALSRDGNS  264 (427)
T ss_pred             cCCCCccc-ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC---E---EEEEEccCCCc
Confidence            45566776 99999999998775  2  46999999887643 3333334556889999995   2   22355666665


Q ss_pred             EEE--eCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           80 KYW--DFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~--~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      .+|  |...+. ...+..+. ......|+|||+.++
T Consensus       265 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~  299 (427)
T PRK02889        265 QIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIY  299 (427)
T ss_pred             eEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEE
Confidence            555  555444 33343333 456788999998753

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=9.6e-10  Score=71.91  Aligned_cols=98  Identities=12%  Similarity=0.148  Sum_probs=79.3

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC--C--ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST--G--LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      |+-.+.+ .++||.++.++++. ||.|.+|.-..  .  .....+..|..+|.+++|+++|.       ++++||..+.+
T Consensus       204 Htf~~t~-~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-------~LlSGG~E~VL  275 (792)
T KOG1963|consen  204 HTFNITC-VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-------YLLSGGREGVL  275 (792)
T ss_pred             hccccee-EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-------eEeecccceEE
Confidence            4445666 89999999999998 89999997432  1  23456677888999999999994       88899999999


Q ss_pred             EEEeCCCCceEEEEecCCCEEEEEEcCCCcE
Q 033738           80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFA  110 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  110 (112)
                      -+|.+.+++....-+..+++..+.++||+..
T Consensus       276 v~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~  306 (792)
T KOG1963|consen  276 VLWQLETGKKQFLPRLGSPILHIVVSPDSDL  306 (792)
T ss_pred             EEEeecCCCcccccccCCeeEEEEEcCCCCe
Confidence            9999999884444445669999999999875

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=1.5e-09  Score=68.25  Aligned_cols=101  Identities=17%  Similarity=0.206  Sum_probs=65.8

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +...+.. ..|+|||+.|+..+  +  ..|.+|++.+++. ..+....+.....+|+|+++   +++ +......+..|+
T Consensus       197 ~~~~~~~-p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~~g~~~~~~~SpDG~---~la-~~~~~~g~~~Iy  270 (430)
T PRK00178        197 SREPILS-PRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNFEGLNGAPAWSPDGS---KLA-FVLSKDGNPEIY  270 (430)
T ss_pred             CCCceee-eeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCCCCCcCCeEECCCCC---EEE-EEEccCCCceEE
Confidence            4455665 89999999988765  2  4789999987753 33333334455789999994   332 222223334688


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ++|+.++................|+|+|+.+
T Consensus       271 ~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i  301 (430)
T PRK00178        271 VMDLASRQLSRVTNHPAIDTEPFWGKDGRTL  301 (430)
T ss_pred             EEECCCCCeEEcccCCCCcCCeEECCCCCEE
Confidence            8899887654433333355667899999865

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.14  E-value=3.1e-10  Score=73.69  Aligned_cols=100  Identities=14%  Similarity=0.157  Sum_probs=77.9

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc---CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec--CCc
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL--DET   78 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--d~~   78 (112)
                      .|...+.+ ++|+++|+++++|-   ...+++|++.....+..+..|.-.++|++|+|.+.       |+++.+.  |-.
T Consensus        76 ssRk~~t~-vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~k-------yvvSVGsQHDMI  147 (1080)
T KOG1408|consen   76 SSRKPLTC-VAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNK-------YVVSVGSQHDMI  147 (1080)
T ss_pred             ccCcceeE-EEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCc-------EEEeeccccceE
Confidence            35567777 99999999999996   47899999998777888989999999999999995       7777765  456


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +.+||-+.......-+..+.|..++|+.+|.|+
T Consensus       148 Vnv~dWr~N~~~asnkiss~Vsav~fsEdgSYf  180 (1080)
T KOG1408|consen  148 VNVNDWRVNSSGASNKISSVVSAVAFSEDGSYF  180 (1080)
T ss_pred             EEhhhhhhcccccccccceeEEEEEEccCCcee
Confidence            778876544333333334578889999998765

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=1.9e-09  Score=62.17  Aligned_cols=94  Identities=17%  Similarity=0.182  Sum_probs=65.8

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecccc----------CCceEEEEEecCCCCccceeEEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGH----------TAPVTTVIVVPASTPATKILSYC   70 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~   70 (112)
                      +.||++++.+ +.--.....+.+|+ ||++++||.++++.+..+...          ...+.+++.+.+         ++
T Consensus       152 ~rGHtDYvH~-vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---------Wl  221 (325)
T KOG0649|consen  152 YRGHTDYVHS-VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---------WL  221 (325)
T ss_pred             EcCCcceeee-eeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---------eE
Confidence            6899999997 76633334566777 999999999998776655432          223444444322         44


Q ss_pred             EeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcC
Q 033738           71 WTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGK  106 (112)
Q Consensus        71 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~  106 (112)
                      + |+....+.+|.++..++..+++.+.++..+.|..
T Consensus       222 v-CGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~  256 (325)
T KOG0649|consen  222 V-CGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVD  256 (325)
T ss_pred             E-ecCCCceeEEeccCCCceEEEecccceeEeeeec
Confidence            3 4455689999999999998888877777666653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.13  E-value=9e-10  Score=66.32  Aligned_cols=77  Identities=19%  Similarity=0.314  Sum_probs=64.8

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEcC--CeEEEEeCCCCceeeeccccCC--ceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTA--PVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~~--~~v~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      +..|.+.+-+ ++|+++|..|+++++  ..||++.+..|+.+..|+....  .+..++|+|++.       ++.+.+..+
T Consensus       169 I~aH~~~lAa-lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-------~L~~sS~Te  240 (391)
T KOG2110|consen  169 INAHKGPLAA-LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-------FLAASSNTE  240 (391)
T ss_pred             EEecCCceeE-EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-------eEEEecCCC
Confidence            5679999998 999999999999993  5679999999998888875443  356999999995       777888889


Q ss_pred             cEEEEeCCC
Q 033738           78 TIKYWDFST   86 (112)
Q Consensus        78 ~i~~~~~~~   86 (112)
                      +|+++.+++
T Consensus       241 TVHiFKL~~  249 (391)
T KOG2110|consen  241 TVHIFKLEK  249 (391)
T ss_pred             eEEEEEecc
Confidence            999997754

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.13  E-value=2.1e-10  Score=72.02  Aligned_cols=98  Identities=18%  Similarity=0.272  Sum_probs=69.8

Q ss_pred             CCcCCCeEEcCCCCEEE-EEc-CCeEEEEeCCC--------------C--------------ceeeeccccCCceEEEEE
Q 033738            7 SYVSSPPAFSNDVKRLL-VCT-SNTVSIFSTST--------------G--------------LQISSLEGHTAPVTTVIV   56 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~-~~~-~~~v~~~~~~~--------------~--------------~~~~~~~~~~~~v~~~~~   56 (112)
                      ..+.+ ++|-|.+..+. .+- +|.+.++|..-              +              .++..+....+.+...+|
T Consensus       220 tsvT~-ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  220 SSVTC-IKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             cceEE-EEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            56777 99998664433 333 89999986531              0              011122223457788899


Q ss_pred             ecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738           57 VPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      +||+.       ++++.+.||.+|++|+.+.+.+..++.- ....+++|+|||++|.
T Consensus       299 S~DG~-------~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIv  348 (636)
T KOG2394|consen  299 SPDGK-------YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIV  348 (636)
T ss_pred             cCCCc-------eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEE
Confidence            99995       8889999999999999987666555432 2789999999999874

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.12  E-value=8.4e-10  Score=69.03  Aligned_cols=93  Identities=15%  Similarity=0.269  Sum_probs=77.6

Q ss_pred             eEEcCCCCEE-EEEc-CCeEEEEeCCCCceeeec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738           13 PAFSNDVKRL-LVCT-SNTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l-~~~~-~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~   89 (112)
                      ++++|..+.+ .+++ +|.|.+||++...++..+ ..|..+...++|+|...      .++++.+.|..|.+||......
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne------~l~vsVG~Dkki~~yD~~s~~s  243 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE------ALLVSVGYDKKINIYDIRSQAS  243 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc------ceEEEecccceEEEeecccccc
Confidence            7888876554 4566 699999999876655544 46888889999999876      4778999999999999998888


Q ss_pred             EEEEecCCCEEEEEEcCCCcEe
Q 033738           90 LKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        90 ~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ...+....+...++|.++|.++
T Consensus       244 ~~~l~y~~Plstvaf~~~G~~L  265 (673)
T KOG4378|consen  244 TDRLTYSHPLSTVAFSECGTYL  265 (673)
T ss_pred             cceeeecCCcceeeecCCceEE
Confidence            8888888899999999999876

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.11  E-value=2.9e-10  Score=70.32  Aligned_cols=94  Identities=21%  Similarity=0.289  Sum_probs=75.4

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      +.+.. ++-+|-...+-.|. +|+|.+|.....+++..+..|.++|.++++.++|.       |.+|.+.|+.+++||++
T Consensus       252 G~~~v-m~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~-------YMaTtG~Dr~~kIWDlR  323 (545)
T KOG1272|consen  252 GRTDV-MKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR-------YMATTGLDRKVKIWDLR  323 (545)
T ss_pred             Cccch-hhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc-------EEeecccccceeEeeec
Confidence            34444 66677667777776 89999999998888888889999999999999996       89999999999999999


Q ss_pred             CCceEEEEecCCCEEEEEEcCCC
Q 033738           86 TPELLKTIDVKFPIFSMVRGKKG  108 (112)
Q Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~  108 (112)
                      .-..+.+...+.+...++++..|
T Consensus       324 ~~~ql~t~~tp~~a~~ls~Sqkg  346 (545)
T KOG1272|consen  324 NFYQLHTYRTPHPASNLSLSQKG  346 (545)
T ss_pred             cccccceeecCCCcccccccccc
Confidence            76666666555466666666544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.11  E-value=7e-10  Score=68.37  Aligned_cols=103  Identities=22%  Similarity=0.278  Sum_probs=71.0

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCc----------------------------------------
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGL----------------------------------------   39 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~----------------------------------------   39 (112)
                      +..|...|.+ +.|+|.. ..+++.+ ||+++.-|++...                                        
T Consensus       230 f~~hs~~Vs~-l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~  308 (498)
T KOG4328|consen  230 FTPHSGPVSG-LKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL  308 (498)
T ss_pred             eccCCccccc-eEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEe
Confidence            4567778887 8888854 5566666 8888877775221                                        


Q ss_pred             -----eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC--Cce---EEEEecCCCEEEEEEcCCCc
Q 033738           40 -----QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST--PEL---LKTIDVKFPIFSMVRGKKGF  109 (112)
Q Consensus        40 -----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~--~~~---~~~~~~~~~v~~~~~~~~~~  109 (112)
                           ....+..|...|..++++|-.+      -++++++.|++.++||++.  ++.   +.++.....|.+..|+|+|-
T Consensus       309 R~~~s~~~~~~lh~kKI~sv~~NP~~p------~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g  382 (498)
T KOG4328|consen  309 RTDGSEYENLRLHKKKITSVALNPVCP------WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG  382 (498)
T ss_pred             ecCCccchhhhhhhcccceeecCCCCc------hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence                 1223334666888999999875      2577999999999999875  222   33333333999999999875


Q ss_pred             Ee
Q 033738          110 AV  111 (112)
Q Consensus       110 ~~  111 (112)
                      .|
T Consensus       383 tl  384 (498)
T KOG4328|consen  383 TL  384 (498)
T ss_pred             ce
Confidence            43

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.10  E-value=3.1e-09  Score=65.35  Aligned_cols=100  Identities=16%  Similarity=0.108  Sum_probs=79.2

Q ss_pred             ccCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCce-eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            2 IRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQ-ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      ++.|...|.+ +.|+|. .+.|++|+ |+++.+.|.+.... ...++ -.+.|-.++|.|...      ..++++..||.
T Consensus       282 ~~~~~k~Vq~-l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se------~~f~~~tddG~  353 (463)
T KOG0270|consen  282 ITHHGKKVQT-LEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSE------NSFFVSTDDGT  353 (463)
T ss_pred             hhhcCCceeE-EEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCc------eeEEEecCCce
Confidence            4557888997 999986 58889999 99999999985322 22333 356788999999875      36668899999


Q ss_pred             EEEEeCCC-CceEEEEecCC-CEEEEEEcCCCc
Q 033738           79 IKYWDFST-PELLKTIDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        79 i~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~  109 (112)
                      ++-+|++. ++++.+++.|. +|.++++++...
T Consensus       354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p  386 (463)
T KOG0270|consen  354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP  386 (463)
T ss_pred             EEeeecCCCCCceeEEEeccCCcceEEecCCCC
Confidence            99999987 58999998887 999999886543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=4.9e-10  Score=75.03  Aligned_cols=94  Identities=19%  Similarity=0.273  Sum_probs=76.6

Q ss_pred             cCCCeEEcCCC-CEEEEEc--C--CeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            9 VSSPPAFSNDV-KRLLVCT--S--NTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         9 v~~~~~~~~~~-~~l~~~~--~--~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      +.. +.|+|+. ..+++++  |  -.|.+||++.. ...+.+.+|...+.++.|++.+.      .++++++.|+++.+|
T Consensus       209 ~S~-l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~------~lllSsgkD~~ii~w  281 (1049)
T KOG0307|consen  209 CSV-LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP------RLLLSSGKDNRIICW  281 (1049)
T ss_pred             eee-eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc------hhhhcccCCCCeeEe
Confidence            455 8999997 4555555  3  68999998764 34567789999999999999874      256699999999999


Q ss_pred             eCCCCceEEEEecCC-CEEEEEEcCCCc
Q 033738           83 DFSTPELLKTIDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~  109 (112)
                      +.++|+.+..+.... ++..+.|+|...
T Consensus       282 N~~tgEvl~~~p~~~nW~fdv~w~pr~P  309 (1049)
T KOG0307|consen  282 NPNTGEVLGELPAQGNWCFDVQWCPRNP  309 (1049)
T ss_pred             cCCCceEeeecCCCCcceeeeeecCCCc
Confidence            999999999887755 999999998764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=3.4e-09  Score=67.08  Aligned_cols=98  Identities=16%  Similarity=0.123  Sum_probs=64.1

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC--cE
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE--TI   79 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~--~i   79 (112)
                      ...+.. ..|+|||+.|+..+  +  ..|+++|+.+++. ..+....+.....+|+|+++   .++   ++...++  .|
T Consensus       217 ~~~~~~-p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~g~~~~~~wSPDG~---~La---~~~~~~g~~~I  288 (448)
T PRK04792        217 PEPLMS-PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFPGINGAPRFSPDGK---KLA---LVLSKDGQPEI  288 (448)
T ss_pred             CCcccC-ceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCCCCcCCeeECCCCC---EEE---EEEeCCCCeEE
Confidence            345566 89999999998765  2  4688999887753 22322223334679999995   222   2344445  48


Q ss_pred             EEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +++|+.+++...............|+|||+.+
T Consensus       289 y~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I  320 (448)
T PRK04792        289 YVVDIATKALTRITRHRAIDTEPSWHPDGKSL  320 (448)
T ss_pred             EEEECCCCCeEECccCCCCccceEECCCCCEE
Confidence            88898877654333333356778999999876

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=5.2e-09  Score=65.99  Aligned_cols=99  Identities=12%  Similarity=0.114  Sum_probs=65.5

Q ss_pred             CCCCcCCCeEEcCCCCEEEEE-c-C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec--CCc
Q 033738            5 GRSYVSSPPAFSNDVKRLLVC-T-S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL--DET   78 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~-~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--d~~   78 (112)
                      +.+.+.. .+|+|||+.|+.. + +  ..|+++|+.++. ...+..+........|+|+++   .++   .+...  ...
T Consensus       244 ~~g~~~~-~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~Lt~~~~~~~~~~~spDG~---~i~---f~s~~~g~~~  315 (435)
T PRK05137        244 FPGMTFA-PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TTRLTDSPAIDTSPSYSPDGS---QIV---FESDRSGSPQ  315 (435)
T ss_pred             CCCcccC-cEECCCCCEEEEEEecCCCceEEEEECCCCc-eEEccCCCCccCceeEcCCCC---EEE---EEECCCCCCe
Confidence            4455565 8999999887644 4 4  458888988775 455655555566789999995   222   12222  346


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ++++|...+...........+..+.|+|+|+.|
T Consensus       316 Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        316 LYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI  348 (435)
T ss_pred             EEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence            888898766554433333456678899999876

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.10  E-value=9e-10  Score=46.50  Aligned_cols=38  Identities=24%  Similarity=0.552  Sum_probs=34.4

Q ss_pred             ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738           39 LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus        39 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      +++..+.+|.+.|.+++|+|++.       ++++++.|+.+++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-------~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-------FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-------EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-------cceeeCCCCEEEEEC
Confidence            46778899999999999999985       788999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.09  E-value=4.9e-09  Score=62.23  Aligned_cols=85  Identities=19%  Similarity=0.177  Sum_probs=69.6

Q ss_pred             CEEEEEc--CCeEEEEeCCCCce--eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc-EEEEeCCCCceEEEEe
Q 033738           20 KRLLVCT--SNTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET-IKYWDFSTPELLKTID   94 (112)
Q Consensus        20 ~~l~~~~--~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~~~~~~~   94 (112)
                      ..|+.-+  -|.|.+.|+..-+.  ...+..|...+.|++.+.+|.       .++|++..|+ ||+||..+|..+..++
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-------~vATaStkGTLIRIFdt~~g~~l~E~R  221 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-------LVATASTKGTLIRIFDTEDGTLLQELR  221 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-------EEEEeccCcEEEEEEEcCCCcEeeeee
Confidence            4455445  39999999876443  467788999999999999994       7789998886 8899999999998887


Q ss_pred             cC---CCEEEEEEcCCCcEe
Q 033738           95 VK---FPIFSMVRGKKGFAV  111 (112)
Q Consensus        95 ~~---~~v~~~~~~~~~~~~  111 (112)
                      -+   ..+++++|+|++.++
T Consensus       222 RG~d~A~iy~iaFSp~~s~L  241 (346)
T KOG2111|consen  222 RGVDRADIYCIAFSPNSSWL  241 (346)
T ss_pred             cCCchheEEEEEeCCCccEE
Confidence            54   389999999999876

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.09  E-value=4.1e-09  Score=66.05  Aligned_cols=97  Identities=11%  Similarity=0.144  Sum_probs=77.9

Q ss_pred             cCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            3 RGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.|..+-.. ++|+|.. .+|++.+ |..|.+||....+....+. ...+...++|+++|.       +++.|...|.+.
T Consensus       205 ~~HsAP~~g-icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~-------~L~aG~s~G~~i  275 (673)
T KOG4378|consen  205 EAHSAPCRG-ICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGT-------YLCAGNSKGELI  275 (673)
T ss_pred             hhccCCcCc-ceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCce-------EEEeecCCceEE
Confidence            567788887 9999976 5566778 9999999998665544443 567889999999994       888999999999


Q ss_pred             EEeCCC-CceEEEEecCC-CEEEEEEcCCC
Q 033738           81 YWDFST-PELLKTIDVKF-PIFSMVRGKKG  108 (112)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~  108 (112)
                      .||++. ..++.++..|. .|++++|-|..
T Consensus       276 ~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  276 AYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EEecccCCCCceEeeecccceeEEEeeecc
Confidence            999985 45677777776 89999997753

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.08  E-value=4.5e-10  Score=65.22  Aligned_cols=99  Identities=14%  Similarity=0.149  Sum_probs=73.7

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC--Ccee--eeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST--GLQI--SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      .|...|.. +.+.+.-..=+.++ +..+.+|.++.  +...  ....-..-.+..+.+-||++       +++++++|++
T Consensus       203 sh~qpvls-ldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-------IlATAGWD~R  274 (323)
T KOG0322|consen  203 SHKQPVLS-LDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-------ILATAGWDHR  274 (323)
T ss_pred             hccCccee-eeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc-------EEeecccCCc
Confidence            46677776 77776444445555 67788887753  2211  12222344578889999996       8889999999


Q ss_pred             EEEEeCCCCceEEEEecCC-CEEEEEEcCCCcE
Q 033738           79 IKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~  110 (112)
                      +|+|..++.+++..++.|. .|++++|+|+.+.
T Consensus       275 iRVyswrtl~pLAVLkyHsagvn~vAfspd~~l  307 (323)
T KOG0322|consen  275 IRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCEL  307 (323)
T ss_pred             EEEEEeccCCchhhhhhhhcceeEEEeCCCCch
Confidence            9999999999999999998 9999999998554

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.07  E-value=4.5e-09  Score=62.77  Aligned_cols=95  Identities=14%  Similarity=0.199  Sum_probs=73.8

Q ss_pred             CeEEcCCCCEEEEEcCCeEEEEeC-CCCceee---ec----cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738           12 PPAFSNDVKRLLVCTSNTVSIFST-STGLQIS---SL----EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus        12 ~~~~~~~~~~l~~~~~~~v~~~~~-~~~~~~~---~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      ++.|+|||..|++|-...|+++|+ +.|..-.   .+    .+..+-+.+++++|...      ..++.++-...+-++.
T Consensus       163 sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~------~~~a~gsY~q~~giy~  236 (406)
T KOG2919|consen  163 SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDS------KTLAVGSYGQRVGIYN  236 (406)
T ss_pred             eEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCC------cceeeecccceeeeEe
Confidence            389999999999998999999998 4453211   11    12345678999999874      2455777778888888


Q ss_pred             CCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           84 FSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        84 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      -..+.++..+..+. .|+.+.|+++|+.+|
T Consensus       237 ~~~~~pl~llggh~gGvThL~~~edGn~lf  266 (406)
T KOG2919|consen  237 DDGRRPLQLLGGHGGGVTHLQWCEDGNKLF  266 (406)
T ss_pred             cCCCCceeeecccCCCeeeEEeccCcCeec
Confidence            77888888888777 999999999999876

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=1.3e-08  Score=64.17  Aligned_cols=97  Identities=13%  Similarity=0.108  Sum_probs=62.4

Q ss_pred             CCcCCCeEEcCCCCEEEEE-c-C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC--cEE
Q 033738            7 SYVSSPPAFSNDVKRLLVC-T-S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE--TIK   80 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~-~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~   80 (112)
                      +.+.. +.|+|||+.|+.. + +  ..|++||+++++ ...+..+...+....|+|+++   .+   +.+...++  .++
T Consensus       243 ~~~~~-~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~~lt~~~~~~~~~~wSPDG~---~I---~f~s~~~g~~~Iy  314 (429)
T PRK03629        243 RHNGA-PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQ---NL---AYTSDQAGRPQVY  314 (429)
T ss_pred             CCcCC-eEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEccCCCCCcCceEECCCCC---EE---EEEeCCCCCceEE
Confidence            33455 8999999988865 3 3  469999998775 444544445567889999995   22   22333333  455


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      .+|+.++................|+|+|+.+
T Consensus       315 ~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~I  345 (429)
T PRK03629        315 KVNINGGAPQRITWEGSQNQDADVSSDGKFM  345 (429)
T ss_pred             EEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence            5677766543332222355678899999876

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.06  E-value=4.2e-09  Score=65.89  Aligned_cols=99  Identities=16%  Similarity=0.150  Sum_probs=65.3

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-C---CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec--CCc
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL--DET   78 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--d~~   78 (112)
                      +...+.. ++|+|||+.++... +   ..|++||+.+++.. .+....+.....+|+|++.   .+   +++...  +..
T Consensus       188 ~~~~~~~-p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~---~l---~~~~~~~~~~~  259 (417)
T TIGR02800       188 SREPILS-PAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGS---KL---AVSLSKDGNPD  259 (417)
T ss_pred             CCCceec-ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC---EE---EEEECCCCCcc
Confidence            3445665 89999999998775 2   57999999887533 3333445556789999984   22   223333  456


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +++||+.++................|+|+|+.|
T Consensus       260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l  292 (417)
T TIGR02800       260 IYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSI  292 (417)
T ss_pred             EEEEECCCCCEEECCCCCCCCCCEEECCCCCEE
Confidence            999999877554333322344567899998865

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.06  E-value=1.1e-08  Score=64.21  Aligned_cols=56  Identities=14%  Similarity=0.124  Sum_probs=45.3

Q ss_pred             CCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC-CceEEE---EecCCCEEEEEEcCCCcEe
Q 033738           48 TAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST-PELLKT---IDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~---~~~~~~v~~~~~~~~~~~~  111 (112)
                      ..++++++++|++.       +++.++.|+.|++|.+.. |.....   +.. ++++.+.|++|++++
T Consensus       447 ~~~ls~v~ysp~G~-------~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~Ds~~~  506 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGA-------FLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-SPITHLDWSSDSQFL  506 (626)
T ss_pred             CCceEEEEEcCCCC-------EEEEecCCCeEEEEEECCCCcEEEEeeeecC-ceeEEeeecCCCceE
Confidence            67889999999995       899999999999998865 333332   233 599999999999886

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.06  E-value=4.5e-09  Score=65.89  Aligned_cols=97  Identities=12%  Similarity=0.062  Sum_probs=77.5

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      ++|.+.... ++.+|+.+.+++++ |+.+++|+  ..+..-... -..+..+++|+|.+        .++.+...|...+
T Consensus       365 ~gh~delwg-la~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg--------~va~Gt~~G~w~V  432 (626)
T KOG2106|consen  365 QGHGDELWG-LATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG--------VVAVGTATGRWFV  432 (626)
T ss_pred             Eecccceee-EEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc--------eEEEeeccceEEE
Confidence            578888887 99999999999998 99999999  232222221 34567899999998        6678999999999


Q ss_pred             EeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      .|.++...+.......++.+++|+|+|.++
T Consensus       433 ~d~e~~~lv~~~~d~~~ls~v~ysp~G~~l  462 (626)
T KOG2106|consen  433 LDTETQDLVTIHTDNEQLSVVRYSPDGAFL  462 (626)
T ss_pred             EecccceeEEEEecCCceEEEEEcCCCCEE
Confidence            999987766666565699999999999876

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=1.8e-09  Score=68.82  Aligned_cols=62  Identities=23%  Similarity=0.321  Sum_probs=56.8

Q ss_pred             eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcE
Q 033738           42 SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFA  110 (112)
Q Consensus        42 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  110 (112)
                      ..+.+|.+.|.++...|.+.       ++++|+.||++++|.+.+|.|+.++.....|.+++|+|.+..
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~-------wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~  455 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGE-------WLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDL  455 (733)
T ss_pred             eeEeccCCeEEEEEecCCcc-------eeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCc
Confidence            45678999999999999985       889999999999999999999999999999999999998753

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=7.6e-09  Score=65.17  Aligned_cols=99  Identities=17%  Similarity=0.163  Sum_probs=62.8

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCe--EEEEeCCC-CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNT--VSIFSTST-GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~--v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      ... .+|+|||+.|+..+  ++.  +.++++.. +.....+......+....|+|+++   +++ +.........|.+||
T Consensus       283 ~~~-p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~---~La-f~~~~~g~~~I~v~d  357 (428)
T PRK01029        283 QGN-PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK---KIA-FCSVIKGVRQICVYD  357 (428)
T ss_pred             cCC-eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC---EEE-EEEcCCCCcEEEEEE
Confidence            344 89999999888765  454  55555542 223444544445567889999995   232 221112235799999


Q ss_pred             CCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           84 FSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      +.+++..........+..+.|+|||+.|+
T Consensus       358 l~~g~~~~Lt~~~~~~~~p~wSpDG~~L~  386 (428)
T PRK01029        358 LATGRDYQLTTSPENKESPSWAIDSLHLV  386 (428)
T ss_pred             CCCCCeEEccCCCCCccceEECCCCCEEE
Confidence            98887654443333677889999998763

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.03  E-value=2.5e-09  Score=63.56  Aligned_cols=102  Identities=13%  Similarity=0.154  Sum_probs=77.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC---ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG---LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      ++.|...|.+ ++|+|..+.|++++ |..-++|....+   ++.-.+..+....+++.|+|.++       .++.++..+
T Consensus        51 ls~Hd~~vtg-vdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en-------kFAVgSgar  122 (361)
T KOG1523|consen   51 LSEHDKIVTG-VDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN-------KFAVGSGAR  122 (361)
T ss_pred             hhhhCcceeE-EeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc-------eEEeccCcc
Confidence            5678889998 99999999999999 888899988433   33445556778889999999995       677999999


Q ss_pred             cEEEEeCCCCceE---EEE--ecCCCEEEEEEcCCCcEe
Q 033738           78 TIKYWDFSTPELL---KTI--DVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        78 ~i~~~~~~~~~~~---~~~--~~~~~v~~~~~~~~~~~~  111 (112)
                      .+.+|=++..+.-   +.+  +..+.|.++.|+|++-.+
T Consensus       123 ~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl  161 (361)
T KOG1523|consen  123 LISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL  161 (361)
T ss_pred             EEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence            9999877643322   111  223478999999987543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=3.9e-09  Score=63.17  Aligned_cols=100  Identities=20%  Similarity=0.305  Sum_probs=69.5

Q ss_pred             ccCCCCCcCCCeEEcCC--CCEEEEEc-CCeEEEEeCCCCc---------------------------------------
Q 033738            2 IRGGRSYVSSPPAFSND--VKRLLVCT-SNTVSIFSTSTGL---------------------------------------   39 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~--~~~l~~~~-~~~v~~~~~~~~~---------------------------------------   39 (112)
                      ++++...+.. ++|..+  .+.+.+++ ||+|++||++...                                       
T Consensus        66 fk~~~~~~N~-vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~  144 (376)
T KOG1188|consen   66 FKGPPATTNG-VRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDAS  144 (376)
T ss_pred             ecCCCCcccc-eEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceE
Confidence            4667777776 777653  46666776 8888888876321                                       


Q ss_pred             ----------e-eeec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc----eEEEEecCCCEEEEE
Q 033738           40 ----------Q-ISSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE----LLKTIDVKFPIFSMV  103 (112)
Q Consensus        40 ----------~-~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~~~~v~~~~  103 (112)
                                . ++.+ ..|...|++++|+|..+      .++++|+.||.+.++|+..-.    .+.++...+.|..+.
T Consensus       145 v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p------nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ig  218 (376)
T KOG1188|consen  145 VVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP------NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIG  218 (376)
T ss_pred             EEEEEeccccchhhhhhhhccCcceeEEecCCCC------CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeee
Confidence                      1 1111 34778899999999887      466799999999999987432    234455555788888


Q ss_pred             EcCCC
Q 033738          104 RGKKG  108 (112)
Q Consensus       104 ~~~~~  108 (112)
                      |..++
T Consensus       219 w~~~~  223 (376)
T KOG1188|consen  219 WLSKK  223 (376)
T ss_pred             eecCC
Confidence            87766

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=3.8e-09  Score=62.57  Aligned_cols=90  Identities=14%  Similarity=0.179  Sum_probs=68.1

Q ss_pred             ccCCCCCcCCCeEEcCC-C---CEEEEEc-CCeEEEEeCCCC--------------------ceeeeccccCCceEEEEE
Q 033738            2 IRGGRSYVSSPPAFSND-V---KRLLVCT-SNTVSIFSTSTG--------------------LQISSLEGHTAPVTTVIV   56 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~-~---~~l~~~~-~~~v~~~~~~~~--------------------~~~~~~~~~~~~v~~~~~   56 (112)
                      |.+|+..|.+ ++|.|+ |   +.|++++ || |++|.+...                    +.+..+..|.++|..+.|
T Consensus       219 L~d~~dpI~d-i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w  296 (361)
T KOG2445|consen  219 LPDHTDPIRD-ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW  296 (361)
T ss_pred             cCCCCCccee-eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence            5689999998 999997 3   5778888 88 999987621                    124556789999999999


Q ss_pred             ecCCCCccceeEEEEeeecCCcEEEEeCC---CCceEEEEecCCCEE
Q 033738           57 VPASTPATKILSYCWTASLDETIKYWDFS---TPELLKTIDVKFPIF  100 (112)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~---~~~~~~~~~~~~~v~  100 (112)
                      +-.|       .++++.+.||.+|+|...   .-+|...+.....+.
T Consensus       297 NmtG-------tiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~  336 (361)
T KOG2445|consen  297 NMTG-------TILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVT  336 (361)
T ss_pred             eeee-------eEEeecCCCceeeehhhhhhhhheeeeEEeccCCCC
Confidence            9998       478899999999999643   234666665544333

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.01  E-value=4.7e-09  Score=69.97  Aligned_cols=96  Identities=17%  Similarity=0.195  Sum_probs=76.6

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee-eccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS-SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.||.+.++. +.++.||+++++.+ |.++++|++++.+... ...+|..+++.+.+.|.         .+++++.|-+.
T Consensus       171 l~GHeG~iF~-i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---------~i~t~gedctc  240 (967)
T KOG0974|consen  171 LKGHEGSIFS-IVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---------RIITVGEDCTC  240 (967)
T ss_pred             ecccCCceEE-EEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---------eeEEeccceEE
Confidence            6899999998 99999999999999 8999999999887665 66689999999999876         35599999999


Q ss_pred             EEEeCCCCceEEEEecCC--CEEEEEEcCCC
Q 033738           80 KYWDFSTPELLKTIDVKF--PIFSMVRGKKG  108 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~  108 (112)
                      ++|+.. +..+.++..|.  .++.++..++.
T Consensus       241 rvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~  270 (967)
T KOG0974|consen  241 RVWGVN-GTQLEVYDEHSGKGIWKIAVPIGV  270 (967)
T ss_pred             EEEecc-cceehhhhhhhhcceeEEEEcCCc
Confidence            999654 44444555554  56666655443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.01  E-value=1.4e-08  Score=64.22  Aligned_cols=94  Identities=16%  Similarity=0.107  Sum_probs=80.6

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      .|.+.|.+ +.++.+-..|.+++ |..+..|+....+.++.+......+..++.+||+.       ++++++  ++|++|
T Consensus       100 ~h~~~v~~-~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~-------~l~~as--~~ik~~  169 (541)
T KOG4547|consen  100 KHYGNVNE-ILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK-------ILLTAS--RQIKVL  169 (541)
T ss_pred             CCCCccee-eecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC-------EEEecc--ceEEEE
Confidence            48888887 77787778888888 89999999998888888888888889999999985       444554  689999


Q ss_pred             eCCCCceEEEEecCC-CEEEEEEcCC
Q 033738           83 DFSTPELLKTIDVKF-PIFSMVRGKK  107 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~-~v~~~~~~~~  107 (112)
                      |+++++.+.++.+|. +|+++.|.-+
T Consensus       170 ~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  170 DIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             EccCceEEEEecCCCcceEEEEEEEe
Confidence            999999999999988 9999988765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.01  E-value=3.3e-09  Score=66.86  Aligned_cols=80  Identities=15%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC----------ceeeeccccCCceEEEEEecCCCCccceeEEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG----------LQISSLEGHTAPVTTVIVVPASTPATKILSYC   70 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   70 (112)
                      |.+|.+.|.| +++.++++.+++|+ ||.|+.|++...          .....+.+|...++.+++|+...       .+
T Consensus       340 fraH~gPVl~-v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-------~L  411 (577)
T KOG0642|consen  340 FRAHEGPVLC-VVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-------RL  411 (577)
T ss_pred             EecccCceEE-EEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-------ce
Confidence            5789999998 99999999999999 999999965421          12356678999999999998874       46


Q ss_pred             EeeecCCcEEEEeCCCCce
Q 033738           71 WTASLDETIKYWDFSTPEL   89 (112)
Q Consensus        71 ~~~~~d~~i~~~~~~~~~~   89 (112)
                      ++++.||++++|+......
T Consensus       412 lscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  412 LSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             eeecCCceEEeeccCCcCc
Confidence            6999999999999876544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=5.7e-09  Score=63.94  Aligned_cols=101  Identities=10%  Similarity=0.121  Sum_probs=78.8

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC------Cceeeec-cccCCceEEEEEecCCCCccceeEEEEee
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST------GLQISSL-EGHTAPVTTVIVVPASTPATKILSYCWTA   73 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~------~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   73 (112)
                      +.+|.+.|.+ +.|+.++++|++|+ |..+++|.+..      .+++... ..|...+.+++|.-...       .+.+|
T Consensus        52 ~~~H~GCiNA-lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-------~~~SG  123 (609)
T KOG4227|consen   52 VREHTGCINA-LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-------FLYSG  123 (609)
T ss_pred             hhhhccccce-eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-------eEecC
Confidence            3579999998 99999999999999 79999999753      2333322 23567899999987663       66699


Q ss_pred             ecCCcEEEEeCCCCceEEEEecCC---CEEEEEEcCCCcE
Q 033738           74 SLDETIKYWDFSTPELLKTIDVKF---PIFSMVRGKKGFA  110 (112)
Q Consensus        74 ~~d~~i~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~  110 (112)
                      +.++++.+-|+++.+.+..+....   .|+.+..+|..+.
T Consensus       124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~  163 (609)
T KOG4227|consen  124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNT  163 (609)
T ss_pred             CCcceeEeeecccceeeeeecccCcccceeecccCCCCce
Confidence            999999999999998888776544   7777777776543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.01  E-value=7.3e-09  Score=61.07  Aligned_cols=99  Identities=17%  Similarity=0.151  Sum_probs=73.8

Q ss_pred             cCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCC-cee-eeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            3 RGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTG-LQI-SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      ++|.-.... +.|+.. .+.+++|+ |+.+..||++.. +.+ ...+.|...|.++.-+|..+      .++++|+.|..
T Consensus       162 k~He~E~Wt-a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~------~~I~TGsYDe~  234 (339)
T KOG0280|consen  162 KVHEFEAWT-AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKP------TYIATGSYDEC  234 (339)
T ss_pred             cccceeeee-eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCC------ceEEEeccccc
Confidence            456555555 667654 47788888 899999999843 333 33556888899998887654      37889999999


Q ss_pred             EEEEeCCC-CceEEEEecCCCEEEEEEcCCC
Q 033738           79 IKYWDFST-PELLKTIDVKFPIFSMVRGKKG  108 (112)
Q Consensus        79 i~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~  108 (112)
                      |++||.++ ++++........|+.+.++|.-
T Consensus       235 i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  235 IRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI  265 (339)
T ss_pred             eeeeehhcccCccccCccccceEEEEecchh
Confidence            99999985 6777666666688888888753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.00  E-value=1.8e-08  Score=62.33  Aligned_cols=86  Identities=21%  Similarity=0.282  Sum_probs=64.4

Q ss_pred             CEEEEE-c-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738           20 KRLLVC-T-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        20 ~~l~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~   97 (112)
                      ++++.. . ++.|.+.|..+.+.+..+.........+.++|+++       +++.++.|+.+.++|+.+++.+.+++...
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr-------~~yv~~rdg~vsviD~~~~~~v~~i~~G~   78 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR-------YLYVANRDGTVSVIDLATGKVVATIKVGG   78 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS-------EEEEEETTSEEEEEETTSSSEEEEEE-SS
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC-------EEEEEcCCCeEEEEECCcccEEEEEecCC
Confidence            445443 4 79999999999888888876544445677899996       55567889999999999999999999888


Q ss_pred             CEEEEEEcCCCcEeC
Q 033738           98 PIFSMVRGKKGFAVF  112 (112)
Q Consensus        98 ~v~~~~~~~~~~~~~  112 (112)
                      ....+++++||++++
T Consensus        79 ~~~~i~~s~DG~~~~   93 (369)
T PF02239_consen   79 NPRGIAVSPDGKYVY   93 (369)
T ss_dssp             EEEEEEE--TTTEEE
T ss_pred             CcceEEEcCCCCEEE
Confidence            889999999999875

...

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.00  E-value=3.1e-08  Score=60.54  Aligned_cols=102  Identities=31%  Similarity=0.423  Sum_probs=79.1

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.+|...+.. ++++|++..++.++  ++.+++|+...+.....+..|...+.+++|+|++.      .++++++.|+.+
T Consensus       151 ~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~d~~i  223 (466)
T COG2319         151 LEGHSESVTS-LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG------LLIASGSSDGTI  223 (466)
T ss_pred             EecCcccEEE-EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc------eEEEEecCCCcE
Confidence            4568888887 99999998777775  89999999988777777888899999999998873      144456899999


Q ss_pred             EEEeCCCCceEE-EEecCCCEEEEEEcCCCcE
Q 033738           80 KYWDFSTPELLK-TIDVKFPIFSMVRGKKGFA  110 (112)
Q Consensus        80 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~  110 (112)
                      ++||...+.... .+..+.......|+|++..
T Consensus       224 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (466)
T COG2319         224 RLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSL  255 (466)
T ss_pred             EEEECCCCcEEeeecCCCCcceeEeECCCCCE
Confidence            999988777777 4665553222268888743

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=2.1e-08  Score=62.17  Aligned_cols=91  Identities=12%  Similarity=0.084  Sum_probs=75.3

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK   91 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~   91 (112)
                      ..+++++++++..+ .|.|.+....+++.+..++. .+.+..+.|+.++.       .++.++.+|.|++||++...++.
T Consensus       309 FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk-------~l~~~~~~GeV~v~nl~~~~~~~  380 (514)
T KOG2055|consen  309 FEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSK-------ELLASGGTGEVYVWNLRQNSCLH  380 (514)
T ss_pred             eEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCc-------EEEEEcCCceEEEEecCCcceEE
Confidence            77899999999988 89999999988888877774 57789999998884       45578888999999999999998


Q ss_pred             EEecCC--CEEEEEEcCCCcEe
Q 033738           92 TIDVKF--PIFSMVRGKKGFAV  111 (112)
Q Consensus        92 ~~~~~~--~v~~~~~~~~~~~~  111 (112)
                      .+....  .-++++.+++|.++
T Consensus       381 rf~D~G~v~gts~~~S~ng~yl  402 (514)
T KOG2055|consen  381 RFVDDGSVHGTSLCISLNGSYL  402 (514)
T ss_pred             EEeecCccceeeeeecCCCceE
Confidence            887665  44566767888765

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=3.4e-08  Score=62.39  Aligned_cols=97  Identities=13%  Similarity=0.062  Sum_probs=62.8

Q ss_pred             CCcCCCeEEcCCCCEEEEE-c-C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEe-eecCC--cE
Q 033738            7 SYVSSPPAFSNDVKRLLVC-T-S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT-ASLDE--TI   79 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~-~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~d~--~i   79 (112)
                      +.... ++|+|||+.++.. + +  ..|++||+.+++ ...+..+.......+|+|++.       .++. ...++  .+
T Consensus       248 g~~~~-~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~-------~l~f~sd~~g~~~i  318 (433)
T PRK04922        248 GINGA-PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGK-------SIYFTSDRGGRPQI  318 (433)
T ss_pred             CCccC-ceECCCCCEEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCC-------EEEEEECCCCCceE
Confidence            33444 8999999887644 3 3  479999998775 445555544456789999995       3333 33344  47


Q ss_pred             EEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      +++|+.+++.............++|+|+|+.++
T Consensus       319 y~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        319 YRVAASGGSAERLTFQGNYNARASVSPDGKKIA  351 (433)
T ss_pred             EEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence            777877765433332223455689999998763

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.99  E-value=9.6e-10  Score=46.42  Aligned_cols=32  Identities=28%  Similarity=0.373  Sum_probs=30.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEe
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFS   34 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~   34 (112)
                      +++|.+.|.+ ++|+|+++.+++++ |+.|++||
T Consensus         7 ~~~h~~~i~~-i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    7 FRGHSSSINS-IAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EESSSSSEEE-EEEETTSSEEEEEETTSEEEEEE
T ss_pred             EcCCCCcEEE-EEEecccccceeeCCCCEEEEEC
Confidence            6789999998 99999999999999 99999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.98  E-value=1.9e-08  Score=59.98  Aligned_cols=98  Identities=18%  Similarity=0.167  Sum_probs=77.4

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC---ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG---LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+.+++ .+|++|++.++.+. ...|.+|.....   +..+.+..|...|+.++|+|..+       -+++++.|+.-++
T Consensus        10 ~~pitc-hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-------rIvtcs~drnayV   81 (361)
T KOG1523|consen   10 LEPITC-HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-------RIVTCSHDRNAYV   81 (361)
T ss_pred             cCceee-eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-------ceeEccCCCCccc
Confidence            457887 99999999999887 678998886543   45688889999999999999984       5569999999999


Q ss_pred             EeCCC-Cce--E-EEEecCCCEEEEEEcCCCcEe
Q 033738           82 WDFST-PEL--L-KTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~-~~~--~-~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      |...+ ++-  . ..++....+.++.|+|.++.+
T Consensus        82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkF  115 (361)
T KOG1523|consen   82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKF  115 (361)
T ss_pred             cccCCCCeeccceeEEEeccceeeEeecCcCceE
Confidence            99843 332  2 223344589999999988764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.98  E-value=4.7e-09  Score=66.21  Aligned_cols=98  Identities=17%  Similarity=0.324  Sum_probs=73.7

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC--------CceeeeccccCCceEEEEEecCCCCccceeEEEEeee
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST--------GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS   74 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   74 (112)
                      .|.+.+.. +.+.|-...|++++ |+.+++|+++.        -+++..|.+|.++|.|+++.+++.       .+++++
T Consensus       292 s~~d~ir~-l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-------~~ysgg  363 (577)
T KOG0642|consen  292 SHDDCIRA-LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-------HCYSGG  363 (577)
T ss_pred             cchhhhhh-hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-------EEEeec
Confidence            36666776 88888888999999 99999999942        145678889999999999999985       777999


Q ss_pred             cCCcEEEEeCCC------Cc----eEEEEecCC-CEEEEEEcCCCc
Q 033738           75 LDETIKYWDFST------PE----LLKTIDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        75 ~d~~i~~~~~~~------~~----~~~~~~~~~-~v~~~~~~~~~~  109 (112)
                      .||+|+.|++..      ..    ....+.+|. .++.+++++...
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~  409 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD  409 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc
Confidence            999999996541      11    122334444 677777776544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.98  E-value=2.1e-08  Score=60.27  Aligned_cols=97  Identities=13%  Similarity=0.133  Sum_probs=76.1

Q ss_pred             CcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      .|.. +.|+.|..+++++-  ++.|.+|++...+-...+.....++..+.|||+++      -++.+...+-+|.+|.+.
T Consensus        50 ki~y-ieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgr------hiL~tseF~lriTVWSL~  122 (447)
T KOG4497|consen   50 KIVY-IEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGR------HILLTSEFDLRITVWSLN  122 (447)
T ss_pred             Hhhh-eeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcc------eEeeeecceeEEEEEEec
Confidence            4555 78888887777665  78999999988877788888888899999999995      245588889999999998


Q ss_pred             CCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           86 TPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +......-.....+..++|+|+|++.
T Consensus       123 t~~~~~~~~pK~~~kg~~f~~dg~f~  148 (447)
T KOG4497|consen  123 TQKGYLLPHPKTNVKGYAFHPDGQFC  148 (447)
T ss_pred             cceeEEecccccCceeEEECCCCcee
Confidence            77664433333377889999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.97  E-value=6.2e-09  Score=67.52  Aligned_cols=98  Identities=17%  Similarity=0.223  Sum_probs=69.1

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee----------ec-------------------------c
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS----------SL-------------------------E   45 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~----------~~-------------------------~   45 (112)
                      ++||.+.|.+ ++|+.||+.+++|+ |..|.+|..+-...++          .+                         .
T Consensus        49 LKgHKDtVyc-VAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~  127 (1081)
T KOG1538|consen   49 LKGHKDTVYC-VAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS  127 (1081)
T ss_pred             cccccceEEE-EEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH
Confidence            7899999998 99999999999998 9999999865211000          00                         0


Q ss_pred             --ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEec---C-CCEEEEEEcCCC
Q 033738           46 --GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDV---K-FPIFSMVRGKKG  108 (112)
Q Consensus        46 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---~-~~v~~~~~~~~~  108 (112)
                        ....++.+++|..||.       |++-|-.+|+|.+-+-. |+..-.+.-   + +++++++|+|+.
T Consensus       128 K~kss~R~~~CsWtnDGq-------ylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~s  188 (1081)
T KOG1538|consen  128 KHKSSSRIICCSWTNDGQ-------YLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSS  188 (1081)
T ss_pred             hhhhheeEEEeeecCCCc-------EEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCC
Confidence              0123566778888884       78888889999987643 433333322   2 399999999864

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.93  E-value=3.9e-08  Score=61.65  Aligned_cols=101  Identities=15%  Similarity=0.100  Sum_probs=77.1

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec----CCc
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL----DET   78 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----d~~   78 (112)
                      +..+.|.. +..+|+|+.++.+. ...+.++|+++++....-+...+.++.+.|+|+++       +++-+--    ...
T Consensus       399 ~~lg~I~a-v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr-------~iAYafP~gy~tq~  470 (668)
T COG4946         399 KDLGNIEA-VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR-------WIAYAFPEGYYTQS  470 (668)
T ss_pred             CCccceEE-EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce-------eEEEecCcceeeee
Confidence            34567776 99999999999998 58999999999975444455678899999999984       4444433    357


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      |+++|+..++..........=.+.+|.|+|+++|
T Consensus       471 Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         471 IKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             EEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence            9999999877766555444556778999999875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=7.7e-08  Score=61.05  Aligned_cols=96  Identities=15%  Similarity=0.164  Sum_probs=61.6

Q ss_pred             cCCCeEEcCCCCEEEEE-c-CC--eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC--CcEEEE
Q 033738            9 VSSPPAFSNDVKRLLVC-T-SN--TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD--ETIKYW   82 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~-~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d--~~i~~~   82 (112)
                      ... .+|+|||+.|+.. + ++  .|+++|+.+++ ...+..+........|+|+++   .++   .+...+  ..++++
T Consensus       264 ~~~-~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~~~~~p~wSpDG~---~I~---f~s~~~g~~~Iy~~  335 (448)
T PRK04792        264 NGA-PRFSPDGKKLALVLSKDGQPEIYVVDIATKA-LTRITRHRAIDTEPSWHPDGK---SLI---FTSERGGKPQIYRV  335 (448)
T ss_pred             cCC-eeECCCCCEEEEEEeCCCCeEEEEEECCCCC-eEECccCCCCccceEECCCCC---EEE---EEECCCCCceEEEE
Confidence            344 8999999988765 3 44  58888988765 445554545556789999985   222   233333  457777


Q ss_pred             eCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           83 DFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      |+.+++...............|+|+|+.++
T Consensus       336 dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~  365 (448)
T PRK04792        336 NLASGKVSRLTFEGEQNLGGSITPDGRSMI  365 (448)
T ss_pred             ECCCCCEEEEecCCCCCcCeeECCCCCEEE
Confidence            887776543322222344578999998764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.92  E-value=1e-08  Score=63.39  Aligned_cols=99  Identities=19%  Similarity=0.131  Sum_probs=70.2

Q ss_pred             CCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCce----eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            5 GRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQ----ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         5 h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      |...|.. ++++|-. ..+++++ |++.++||++.-..    +-....|...|.+..|||.+.       -+++.+.|..
T Consensus       321 h~kKI~s-v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g-------tl~TT~~D~~  392 (498)
T KOG4328|consen  321 HKKKITS-VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG-------TLLTTCQDNE  392 (498)
T ss_pred             hhcccce-eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC-------ceEeeccCCc
Confidence            5667887 9999965 6788888 99999999975321    233346888999999999985       4669999999


Q ss_pred             EEEEeCC----CCceEEEEecC----C--CEEEEEEcCCCcEe
Q 033738           79 IKYWDFS----TPELLKTIDVK----F--PIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~----~~~~~~~~~~~----~--~v~~~~~~~~~~~~  111 (112)
                      |++||..    .-.+..++.+.    .  ...-..|.|+.+++
T Consensus       393 IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li  435 (498)
T KOG4328|consen  393 IRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLI  435 (498)
T ss_pred             eEEeecccccccCCccceeeccCcccccccchhheeCCCccEE
Confidence            9999973    22333344321    1  23345777776655

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=2.5e-08  Score=62.88  Aligned_cols=93  Identities=17%  Similarity=0.191  Sum_probs=58.4

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCe--EEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNT--VSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      ... ++|+|||+.|+.+.  ++.  |++||+.++. ...+..+...+....|+|++.   +   ++++...++...+|++
T Consensus       250 ~~~-~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~---~---i~f~s~~~g~~~I~~~  321 (429)
T PRK01742        250 NGA-PAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQ---S---ILFTSDRSGSPQVYRM  321 (429)
T ss_pred             cCc-eeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCC---E---EEEEECCCCCceEEEE
Confidence            345 89999999888764  565  4555666554 455665666677899999995   2   2334445677777765


Q ss_pred             CC-CceEEEEecCCCEEEEEEcCCCcEe
Q 033738           85 ST-PELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        85 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      .. +.....+. +.. .++.|+|+|+.+
T Consensus       322 ~~~~~~~~~l~-~~~-~~~~~SpDG~~i  347 (429)
T PRK01742        322 SASGGGASLVG-GRG-YSAQISADGKTL  347 (429)
T ss_pred             ECCCCCeEEec-CCC-CCccCCCCCCEE
Confidence            42 22222222 222 456788988876

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=5.7e-08  Score=61.27  Aligned_cols=98  Identities=14%  Similarity=0.074  Sum_probs=60.0

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc--CCeEEEE--eCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC---C
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT--SNTVSIF--STSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD---E   77 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d---~   77 (112)
                      +...... +.|+|||+.++..+  ++...+|  ++.++. ...+..........+|+|+++       +++..+.+   .
T Consensus       282 ~~~~~~~-~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~-------~Ia~~s~~~g~~  352 (427)
T PRK02889        282 SSGIDTE-PFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGK-------LLAYISRVGGAF  352 (427)
T ss_pred             CCCCCcC-eEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCC-------EEEEEEccCCcE
Confidence            3344455 89999999888665  3544555  444443 233322223334578999995       33333332   3


Q ss_pred             cEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           78 TIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        78 ~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      .+++||+.+++... +........+.|+|+|+.|+
T Consensus       353 ~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~  386 (427)
T PRK02889        353 KLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYIL  386 (427)
T ss_pred             EEEEEECCCCCeEE-ccCCCCccCceECCCCCEEE
Confidence            69999998876543 33333456789999998764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=8.9e-08  Score=60.27  Aligned_cols=98  Identities=12%  Similarity=0.076  Sum_probs=63.9

Q ss_pred             cCCCeEEcCCCCE-EEEEc----CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            9 VSSPPAFSNDVKR-LLVCT----SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         9 v~~~~~~~~~~~~-l~~~~----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      ... ..|+|||+. ++..+    +..|.++|+.+++. ..+....+......|+|++.   +++ +..+...+..|+++|
T Consensus       190 ~~~-p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~lt~~~g~~~~~~~SPDG~---~la-~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        190 NIF-PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EKIASSQGMLVVSDVSKDGS---KLL-LTMAPKGQPDIYLYD  263 (419)
T ss_pred             eEe-EEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EEEecCCCcEEeeEECCCCC---EEE-EEEccCCCcEEEEEE
Confidence            344 899999985 55443    25799999988764 33333445556778999994   444 444444567788889


Q ss_pred             CCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           84 FSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      +..+................|+|||+.|+
T Consensus       264 l~~g~~~~LT~~~~~d~~p~~SPDG~~I~  292 (419)
T PRK04043        264 TNTKTLTQITNYPGIDVNGNFVEDDKRIV  292 (419)
T ss_pred             CCCCcEEEcccCCCccCccEECCCCCEEE
Confidence            88776544333332344568999998663

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=1.8e-08  Score=61.29  Aligned_cols=92  Identities=17%  Similarity=0.252  Sum_probs=74.9

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeee-ccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS-LEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      ..+.+ +...|+|+.++++. .+.+..+|++.++.... +.+-.+.+..+..+|..+       ++++++.|+.+|++|+
T Consensus       248 ~~is~-~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-------~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  248 NPISS-TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-------VLASCGLDRYVRIHDI  319 (412)
T ss_pred             Cccee-eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-------eEEeeccceeEEEeec
Confidence            45555 88899999999998 79999999999887765 778888999999999986       8889999999999999


Q ss_pred             CCCceEEEEecCCCEEEEEEcC
Q 033738           85 STPELLKTIDVKFPIFSMVRGK  106 (112)
Q Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~  106 (112)
                      .+...+......+..+++.+.+
T Consensus       320 ktrkll~kvYvKs~lt~il~~~  341 (412)
T KOG3881|consen  320 KTRKLLHKVYVKSRLTFILLRD  341 (412)
T ss_pred             ccchhhhhhhhhccccEEEecC
Confidence            9866665555555556665544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.87  E-value=2.5e-07  Score=56.58  Aligned_cols=101  Identities=27%  Similarity=0.391  Sum_probs=74.8

Q ss_pred             ccCCCCCcCCCeEEcCCCC-EEEEEc-CCeEEEEeCCCCceee-eccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            2 IRGGRSYVSSPPAFSNDVK-RLLVCT-SNTVSIFSTSTGLQIS-SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~-~l~~~~-~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +.+|...+.+ ++|+|++. .+++++ |+.+++||...+.... .+..|.... ...|++++.       ++++++.|+.
T Consensus       194 ~~~~~~~v~~-~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~d~~  264 (466)
T COG2319         194 LAGHTDPVSS-LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS-------LLASGSSDGT  264 (466)
T ss_pred             eccCCCceEE-EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC-------EEEEecCCCc
Confidence            3457788887 99999998 445535 8999999988776666 577776664 337888874       5669999999


Q ss_pred             EEEEeCCCCce-EEEEecC-CCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPEL-LKTIDVK-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~-~~~~~~~-~~v~~~~~~~~~~~~  111 (112)
                      +++|+...... ......+ ..+.++.|+|++..+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  299 (466)
T COG2319         265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL  299 (466)
T ss_pred             EEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence            99999986654 4444334 389999999966544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=1.9e-07  Score=58.94  Aligned_cols=97  Identities=13%  Similarity=0.081  Sum_probs=62.2

Q ss_pred             CcCCCeEEcCCCCEEEEE-c-C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec--CCcEEE
Q 033738            8 YVSSPPAFSNDVKRLLVC-T-S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL--DETIKY   81 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~-~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~   81 (112)
                      .... +.|+|||+.++.. + +  ..|+++|+++++ ...+..+........|+|++.   .++   .+...  ...+++
T Consensus       244 ~~~~-~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~---~i~---f~s~~~g~~~iy~  315 (430)
T PRK00178        244 LNGA-PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGR---TLY---FTSDRGGKPQIYK  315 (430)
T ss_pred             CcCC-eEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCC---EEE---EEECCCCCceEEE
Confidence            3445 8999999988754 3 3  478889998775 344554444556678999985   222   23333  346788


Q ss_pred             EeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      +++.+++...............|+|+|+.++
T Consensus       316 ~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~  346 (430)
T PRK00178        316 VNVNGGRAERVTFVGNYNARPRLSADGKTLV  346 (430)
T ss_pred             EECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            8888776543332222344578999998763

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=2.3e-07  Score=58.63  Aligned_cols=96  Identities=17%  Similarity=0.136  Sum_probs=64.8

Q ss_pred             CCcCCCeEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            7 SYVSSPPAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      ..+.. +.|+|||+.|+...  +  ..|.+||+.+++. ..+......+....|+|++.   .++ +.........++++
T Consensus       327 ~~~~~-p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~---~L~-f~~~~~g~~~L~~v  400 (428)
T PRK01029        327 RNSSC-PAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSWAIDSL---HLV-YSAGNSNESELYLI  400 (428)
T ss_pred             CCccc-eeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEECCCCC---EEE-EEECCCCCceEEEE
Confidence            44555 89999999888765  2  5799999988764 44443334566789999984   232 22223345678899


Q ss_pred             eCCCCceEEEEecCCCEEEEEEcCCC
Q 033738           83 DFSTPELLKTIDVKFPIFSMVRGKKG  108 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~  108 (112)
                      |+..++..........+...+|+|-.
T Consensus       401 dl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        401 SLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             ECCCCCEEEeecCCCcccCceecCCC
Confidence            99877765555444467778888754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.83  E-value=1.6e-07  Score=57.29  Aligned_cols=93  Identities=15%  Similarity=0.125  Sum_probs=62.8

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCC-Cc---eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTST-GL---QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      +.++|+++.+++++  ++.+.+|+++. +.   ....+. +......++++|+++      .++++...++.|.+||+.+
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~------~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNR------TLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCC------EEEEeeCCCCEEEEEEECC
Confidence            88999999998886  69999999864 32   122222 222346778999985      2345666779999999976


Q ss_pred             CceEE-------EEecCCCEEEEEEcCCCcEeC
Q 033738           87 PELLK-------TIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        87 ~~~~~-------~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      ...+.       ..........+.|+|+|+++|
T Consensus       158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly  190 (330)
T PRK11028        158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY  190 (330)
T ss_pred             CCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence            32221       122233567789999999875

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=1.3e-07  Score=57.40  Aligned_cols=99  Identities=22%  Similarity=0.139  Sum_probs=70.1

Q ss_pred             CCCcCCCeEEcCCC-CEEEEEcCCeEEEEeCCC-Cceee-----------ecc-ccCCceEEEEEecCCCCccceeEEEE
Q 033738            6 RSYVSSPPAFSNDV-KRLLVCTSNTVSIFSTST-GLQIS-----------SLE-GHTAPVTTVIVVPASTPATKILSYCW   71 (112)
Q Consensus         6 ~~~v~~~~~~~~~~-~~l~~~~~~~v~~~~~~~-~~~~~-----------~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~   71 (112)
                      +..|.+ ++|-|.+ ..|+.+..+-|.+|.... ....+           .+. ....+|+.++|.+|+.       .++
T Consensus       140 Qrnvtc-lawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt-------~l~  211 (445)
T KOG2139|consen  140 QRNVTC-LAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGT-------ILV  211 (445)
T ss_pred             hcceeE-EEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCC-------EEe
Confidence            345777 9999976 566666678888997642 11111           111 1236899999999994       445


Q ss_pred             eee-cCCcEEEEeCCCCceEEEE-ecCCCEEEEEEcCCCcEeC
Q 033738           72 TAS-LDETIKYWDFSTPELLKTI-DVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        72 ~~~-~d~~i~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~  112 (112)
                      +++ .|..|.+||..++.++... .....+.-+.|+|||.++|
T Consensus       212 tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf  254 (445)
T KOG2139|consen  212 TASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF  254 (445)
T ss_pred             ecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence            555 5788999999998877665 3344788899999999886

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.81  E-value=2.8e-07  Score=57.77  Aligned_cols=99  Identities=17%  Similarity=0.091  Sum_probs=63.3

Q ss_pred             CCCcCCCeEEcCCCCEEEEE-c-C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC--CcE
Q 033738            6 RSYVSSPPAFSNDVKRLLVC-T-S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD--ETI   79 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~-~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d--~~i   79 (112)
                      .+.+.. ++|+|||+.|+.. + +  ..|++|++.++. ...+..+........|+|++.   +++   .+...+  ..+
T Consensus       233 ~~~~~~-~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s~dg~---~l~---~~s~~~g~~~i  304 (417)
T TIGR02800       233 PGMNGA-PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTRLTNGPGIDTEPSWSPDGK---SIA---FTSDRGGSPQI  304 (417)
T ss_pred             CCCccc-eEECCCCCEEEEEECCCCCccEEEEECCCCC-EEECCCCCCCCCCEEECCCCC---EEE---EEECCCCCceE
Confidence            344555 8999999877654 3 3  468999988765 344444444445678999984   222   222222  368


Q ss_pred             EEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      +++|+.+++.............+.|+|+|+.++
T Consensus       305 y~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~  337 (417)
T TIGR02800       305 YMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA  337 (417)
T ss_pred             EEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence            888888766543333334667789999998763

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.80  E-value=5.5e-07  Score=55.93  Aligned_cols=90  Identities=22%  Similarity=0.186  Sum_probs=61.4

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK   91 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~   91 (112)
                      +.++|||++++..+ |+.|.++|+.+.+.+..+.... ....++++++++      .++++...++.+.++|.++.+.+.
T Consensus        42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~------~~~v~n~~~~~v~v~D~~tle~v~  114 (369)
T PF02239_consen   42 LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGK------YVYVANYEPGTVSVIDAETLEPVK  114 (369)
T ss_dssp             EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTT------EEEEEEEETTEEEEEETTT--EEE
T ss_pred             EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCC------EEEEEecCCCceeEecccccccee
Confidence            67899999998887 9999999999998888887544 357899999996      233455678999999999988888


Q ss_pred             EEecC--------CCEEEEEEcCCCc
Q 033738           92 TIDVK--------FPIFSMVRGKKGF  109 (112)
Q Consensus        92 ~~~~~--------~~v~~~~~~~~~~  109 (112)
                      .+...        ..+.++.-+|...
T Consensus       115 ~I~~~~~~~~~~~~Rv~aIv~s~~~~  140 (369)
T PF02239_consen  115 TIPTGGMPVDGPESRVAAIVASPGRP  140 (369)
T ss_dssp             EEE--EE-TTTS---EEEEEE-SSSS
T ss_pred             ecccccccccccCCCceeEEecCCCC
Confidence            77643        1455666566554

...

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.80  E-value=3.9e-08  Score=63.38  Aligned_cols=101  Identities=20%  Similarity=0.148  Sum_probs=75.0

Q ss_pred             CCCCCcCCCeEEcCCC-CEEEEEcCCeEEEEeCC-CCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            4 GGRSYVSSPPAFSNDV-KRLLVCTSNTVSIFSTS-TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~-~~l~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .|.+.|.. +.++|=+ ..+.+++|..+++|... ...++..+..+...+++++|||..+      +.++++..||.+.+
T Consensus       396 ~h~g~v~~-v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp------avF~~~d~~G~l~i  468 (555)
T KOG1587|consen  396 THIGPVYA-VSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP------AVFATVDGDGNLDI  468 (555)
T ss_pred             ccCcceEe-eecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc------eEEEEEcCCCceeh
Confidence            46778887 8888866 45556669999999977 4556667777777899999999987      67889999999999


Q ss_pred             EeCCCC--ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           82 WDFSTP--ELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~--~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ||+...  .++....... ....+.|+++|+.+
T Consensus       469 WDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~l  501 (555)
T KOG1587|consen  469 WDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLL  501 (555)
T ss_pred             hhhhccccCCcccccccccccceeecCCCCcEE
Confidence            998753  3333333334 56667777777654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=1.9e-07  Score=59.20  Aligned_cols=95  Identities=17%  Similarity=0.257  Sum_probs=70.8

Q ss_pred             CCCcCCCeEEcCCCCEEEEE-c--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEee---ecCCcE
Q 033738            6 RSYVSSPPAFSNDVKRLLVC-T--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA---SLDETI   79 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~-~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~d~~i   79 (112)
                      .+.|.+ +.|+|+++-++.. +  -..+.++|++ +..+..+.  +++-+++-|+|.++       +++-+   ...|.+
T Consensus       270 ~GPVhd-v~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~-------ii~lAGFGNL~G~m  338 (566)
T KOG2315|consen  270 EGPVHD-VTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGN-------IILLAGFGNLPGDM  338 (566)
T ss_pred             CCCceE-EEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCC-------EEEEeecCCCCCce
Confidence            578888 9999999777654 3  3889999987 55555553  56668899999996       33333   345899


Q ss_pred             EEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      -+||..+.+++..+.... .+-..|+|||++++
T Consensus       339 EvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~fl  370 (566)
T KOG2315|consen  339 EVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFL  370 (566)
T ss_pred             EEEeccchhhccccccCC-ceEEEEcCCCcEEE
Confidence            999999988777776543 44469999999874

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.79  E-value=1.4e-07  Score=60.07  Aligned_cols=71  Identities=17%  Similarity=0.211  Sum_probs=56.5

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      ...+.+ ++++|+.+.++.|+ ||+|.+||...+...  .....-..+.++|+|++.       +++.++..|.+.+||+
T Consensus       259 ~s~v~~-ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~ga-------i~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  259 PSQVIC-CARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGA-------IFVVGSEQGELQCFDM  328 (545)
T ss_pred             CCcceE-EecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCc-------EEEEEcCCceEEEEEe
Confidence            456776 89999999999998 999999998766322  222334467999999994       8889999999999997


Q ss_pred             CC
Q 033738           85 ST   86 (112)
Q Consensus        85 ~~   86 (112)
                      .-
T Consensus       329 AL  330 (545)
T PF11768_consen  329 AL  330 (545)
T ss_pred             ec
Confidence            63

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.78  E-value=1.6e-07  Score=59.98  Aligned_cols=94  Identities=13%  Similarity=0.175  Sum_probs=72.5

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc------ccCC-----ceEEEEEecCCCCccceeEEEEee
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE------GHTA-----PVTTVIVVPASTPATKILSYCWTA   73 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~   73 (112)
                      .+.+.. +.+++...+|++|+ +|.|..||.++......+.      .+.+     .|+++.|+.++       ..++.|
T Consensus       175 ~~~lN~-v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-------L~~aVG  246 (703)
T KOG2321|consen  175 SGELNV-VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-------LHVAVG  246 (703)
T ss_pred             ccccee-eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-------eeEEee
Confidence            356776 88899999999999 8999999998765443332      2222     38999999888       367899


Q ss_pred             ecCCcEEEEeCCCCceEEEEecCC--CEEEEEEcCC
Q 033738           74 SLDETIKYWDFSTPELLKTIDVKF--PIFSMVRGKK  107 (112)
Q Consensus        74 ~~d~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~~~  107 (112)
                      ..+|.+.+||++..+++..-.+..  ++..+.|.+.
T Consensus       247 ts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  247 TSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             ccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence            999999999999988876655443  8888888665

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.77  E-value=3.8e-09  Score=69.66  Aligned_cols=72  Identities=25%  Similarity=0.449  Sum_probs=65.8

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      ..||.+.+.. ++.+.+...+++++ |..|++|-+..+..+..+.+|++.|++++|+|-.           +.+.||+++
T Consensus       228 ~rGhs~ditd-lavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----------sss~dgt~~  295 (1113)
T KOG0644|consen  228 CRGHSGDITD-LAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----------SSSDDGTCR  295 (1113)
T ss_pred             CCCCccccch-hccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----------cCCCCCceE
Confidence            4689999998 99998888888888 8999999999999999999999999999999976           678899999


Q ss_pred             EEeCC
Q 033738           81 YWDFS   85 (112)
Q Consensus        81 ~~~~~   85 (112)
                      +||.+
T Consensus       296 ~wd~r  300 (1113)
T KOG0644|consen  296 IWDAR  300 (1113)
T ss_pred             ecccc
Confidence            99976

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.77  E-value=5.2e-08  Score=61.86  Aligned_cols=88  Identities=16%  Similarity=0.165  Sum_probs=65.0

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      ++|.+.|.+ +.|++..+.+++|+ |-..++||.. |..+..-..|+-++++++|.|+.        .++.++. .++|+
T Consensus       183 kAHDGiiL~-~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~--------~~~v~S~-nt~R~  251 (737)
T KOG1524|consen  183 RAHDGLVLS-LSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK--------DYLLWSY-NTARF  251 (737)
T ss_pred             eccCcEEEE-eecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecccc--------ceeeeee-eeeee
Confidence            578899998 99999999999999 8999999976 65666667789999999999995        2333332 23331


Q ss_pred             EeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      =.          +.-..+..++|++||..+
T Consensus       252 ~~----------p~~GSifnlsWS~DGTQ~  271 (737)
T KOG1524|consen  252 SS----------PRVGSIFNLSWSADGTQA  271 (737)
T ss_pred             cC----------CCccceEEEEEcCCCcee
Confidence            11          111277888999888653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.66  E-value=2.5e-06  Score=52.12  Aligned_cols=98  Identities=10%  Similarity=-0.007  Sum_probs=63.3

Q ss_pred             CCcCCCeEEcCCCCEEEEEc--CCeEEEEeCC-CCce--eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            7 SYVSSPPAFSNDVKRLLVCT--SNTVSIFSTS-TGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      +.... +.++|+++.|+.++  ++.|..|+++ ++..  ..... ..+....++++|+++      .++++...++.+.+
T Consensus        35 ~~~~~-l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~------~l~v~~~~~~~v~v  106 (330)
T PRK11028         35 GQVQP-MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGR------FLFSASYNANCVSV  106 (330)
T ss_pred             CCCcc-EEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCC------EEEEEEcCCCeEEE
Confidence            34455 89999999987765  6889999986 3332  12222 223457899999985      22334445889999


Q ss_pred             EeCCC-Cc---eEEEEecCCCEEEEEEcCCCcEeC
Q 033738           82 WDFST-PE---LLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      |++.+ +.   .+..+........++++|+|+++|
T Consensus       107 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~  141 (330)
T PRK11028        107 SPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW  141 (330)
T ss_pred             EEECCCCCCCCceeeccCCCcccEeEeCCCCCEEE
Confidence            99863 32   223233333566788999998774

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.64  E-value=1.7e-07  Score=60.40  Aligned_cols=93  Identities=25%  Similarity=0.239  Sum_probs=69.7

Q ss_pred             eEEcCC---CCEEEEEc-CCeEEEEeCCCCc------eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738           13 PAFSND---VKRLLVCT-SNTVSIFSTSTGL------QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus        13 ~~~~~~---~~~l~~~~-~~~v~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      ..|++.   .+.|+.+. +|.|.++|....+      .+..+..|.+.|..+.|.|..       ..+++++.|.++++|
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge-------~~lVsasGDsT~r~W  127 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGE-------SLLVSASGDSTIRPW  127 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCc-------eeEEEccCCceeeee
Confidence            355542   35667777 7999999986532      234556799999999999944       366799999999999


Q ss_pred             eCCCCceEEE--EecCC-CEEEEEEcCCCcEeC
Q 033738           83 DFSTPELLKT--IDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        83 ~~~~~~~~~~--~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      |+.++.+...  +.+|. .+.+++|.|....+|
T Consensus       128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF  160 (720)
T KOG0321|consen  128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVF  160 (720)
T ss_pred             eeccceeecceeecccccccchhhhccCCCcce
Confidence            9998887655  66666 888999988766544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=4.1e-07  Score=57.76  Aligned_cols=89  Identities=17%  Similarity=0.271  Sum_probs=63.2

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-C---CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec------C
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL------D   76 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------d   76 (112)
                      +.-.+ +-|+|.|+.++.++ +   |.|.+||..+.+.+..+....  .+-++|+|+|.       +++++..      |
T Consensus       312 gpRN~-~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe-------~flTATTaPRlrvd  381 (566)
T KOG2315|consen  312 GPRNT-AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGE-------YFLTATTAPRLRVD  381 (566)
T ss_pred             CCccc-eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCc-------EEEEEeccccEEec
Confidence            44455 88999999988776 3   999999999887777776543  35679999995       5556654      5


Q ss_pred             CcEEEEeCCCCceEEEEecCCCEEEEEEcC
Q 033738           77 ETIKYWDFSTPELLKTIDVKFPIFSMVRGK  106 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~  106 (112)
                      ..+++|++. |..+......+..+.+.|-|
T Consensus       382 Ng~Kiwhyt-G~~l~~~~f~sEL~qv~W~P  410 (566)
T KOG2315|consen  382 NGIKIWHYT-GSLLHEKMFKSELLQVEWRP  410 (566)
T ss_pred             CCeEEEEec-CceeehhhhhHhHhheeeee
Confidence            778899986 65554443333455566654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.61  E-value=1.2e-06  Score=52.94  Aligned_cols=91  Identities=14%  Similarity=0.134  Sum_probs=66.7

Q ss_pred             eEEcCCCCEEEEEcC---CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738           13 PAFSNDVKRLLVCTS---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~   89 (112)
                      ++|++|..++++-.|   +.+.+||++..+. ..+-....+|....|.|..+       -++.+.....+++|......+
T Consensus       324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l-~avLiQk~piraf~WdP~~p-------rL~vctg~srLY~W~psg~~~  395 (447)
T KOG4497|consen  324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKL-HAVLIQKHPIRAFEWDPGRP-------RLVVCTGKSRLYFWAPSGPRV  395 (447)
T ss_pred             eeecCCceEEeeecCCCCceEEEEechhhhh-hhhhhhccceeEEEeCCCCc-------eEEEEcCCceEEEEcCCCceE
Confidence            899999999999874   7899999987653 33333567899999999885       334566666799998875444


Q ss_pred             EEEEecCCCEEEEEEcCCCcEe
Q 033738           90 LKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        90 ~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +..-..+-.+..+.|+-+|+.+
T Consensus       396 V~vP~~GF~i~~l~W~~~g~~i  417 (447)
T KOG4497|consen  396 VGVPKKGFNIQKLQWLQPGEFI  417 (447)
T ss_pred             EecCCCCceeeeEEecCCCcEE
Confidence            4333333488888888887754

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.60  E-value=7.7e-07  Score=59.93  Aligned_cols=85  Identities=14%  Similarity=0.193  Sum_probs=66.6

Q ss_pred             cCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE-EE
Q 033738           16 SNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK-TI   93 (112)
Q Consensus        16 ~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~-~~   93 (112)
                      +++.-++++|+ .+.+.+|+..--+....+.+|++.+..+.++.+++       ++++.+.|+.+|+|++++++... +.
T Consensus       142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~-------~i~s~SdDRsiRlW~i~s~~~~~~~~  214 (967)
T KOG0974|consen  142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGR-------YIASVSDDRSIRLWPIDSREVLGCTG  214 (967)
T ss_pred             cCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCc-------EEEEEecCcceeeeecccccccCccc
Confidence            44445666777 79999999763232336889999999999999996       88899999999999999887665 43


Q ss_pred             ecCC-CEEEEEEcCC
Q 033738           94 DVKF-PIFSMVRGKK  107 (112)
Q Consensus        94 ~~~~-~v~~~~~~~~  107 (112)
                      -.|. .++.+.|.|+
T Consensus       215 fgHsaRvw~~~~~~n  229 (967)
T KOG0974|consen  215 FGHSARVWACCFLPN  229 (967)
T ss_pred             ccccceeEEEEeccc
Confidence            4454 8888888887

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.57  E-value=1.4e-06  Score=57.77  Aligned_cols=92  Identities=51%  Similarity=0.801  Sum_probs=77.6

Q ss_pred             cCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc
Q 033738            9 VSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE   88 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~   88 (112)
                      +.....|++|++.++...+..|.+|...++.++..+..|..++..+.+.|...   .. .++.+++.+|.|++||...+.
T Consensus        18 ~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~---~~-~~~~~~sl~G~I~vwd~~~~~   93 (792)
T KOG1963|consen   18 NKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSE---NA-NYLIVCSLDGTIRVWDWSDGE   93 (792)
T ss_pred             eecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCc---cc-eEEEEEecCccEEEecCCCcE
Confidence            33347799999999999999999999999999999999999999999988774   22 377799999999999999999


Q ss_pred             eEEEEecCCCEEEEEE
Q 033738           89 LLKTIDVKFPIFSMVR  104 (112)
Q Consensus        89 ~~~~~~~~~~v~~~~~  104 (112)
                      .++++..+.++.++.+
T Consensus        94 Llkt~~~~~~v~~~~~  109 (792)
T KOG1963|consen   94 LLKTFDNNLPVHALVY  109 (792)
T ss_pred             EEEEEecCCceeEEEe
Confidence            9888877666655554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.56  E-value=2.6e-06  Score=52.73  Aligned_cols=98  Identities=14%  Similarity=0.051  Sum_probs=75.0

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc--cCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG--HTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      |...|++ ++|....+.+++|. +++|..-|+.+.+.+..+..  ..+.|..+..+|...       ++++.+.++.+.+
T Consensus       104 H~SNIF~-L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-------~~~~~t~~~~V~~  175 (609)
T KOG4227|consen  104 HRSNIFS-LEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-------TLIVVTRAKLVSF  175 (609)
T ss_pred             cccceEE-EEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCc-------eEEEEecCceEEE
Confidence            5578888 99999888999998 89999999998887766543  346899999999874       7779999999999


Q ss_pred             EeCCCCc----eEEEEecCCCEEEEEEcCCCcE
Q 033738           82 WDFSTPE----LLKTIDVKFPIFSMVRGKKGFA  110 (112)
Q Consensus        82 ~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~  110 (112)
                      ||.+...    ++.....+.....+-|+|....
T Consensus       176 ~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  176 IDNRDRQNPISLVLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             EeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence            9988643    2222233446777778876543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=2e-06  Score=52.72  Aligned_cols=92  Identities=13%  Similarity=0.193  Sum_probs=74.4

Q ss_pred             eEEcCC--CCEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc
Q 033738           13 PAFSND--VKRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE   88 (112)
Q Consensus        13 ~~~~~~--~~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~   88 (112)
                      +.|-+.  ...|++++ -+.+++||.+.+ +++..+...+.+++++...|+++       .++++...+.+..+|.+.+.
T Consensus       208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn-------~Iy~gn~~g~l~~FD~r~~k  280 (412)
T KOG3881|consen  208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN-------FIYTGNTKGQLAKFDLRGGK  280 (412)
T ss_pred             ceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc-------EEEEecccchhheecccCce
Confidence            677776  68889998 799999999876 45567777788999999999995       67799999999999999887


Q ss_pred             eEEE-EecCC-CEEEEEEcCCCcEe
Q 033738           89 LLKT-IDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        89 ~~~~-~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .+.. +..-. .++++..+|.++++
T Consensus       281 l~g~~~kg~tGsirsih~hp~~~~l  305 (412)
T KOG3881|consen  281 LLGCGLKGITGSIRSIHCHPTHPVL  305 (412)
T ss_pred             eeccccCCccCCcceEEEcCCCceE
Confidence            7655 44333 88888888887664

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.54  E-value=1e-06  Score=53.14  Aligned_cols=65  Identities=20%  Similarity=0.365  Sum_probs=50.6

Q ss_pred             EEEEE-cCCeEEEEeCCCCceeeeccccCCceEEEEEecC-CCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738           21 RLLVC-TSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPA-STPATKILSYCWTASLDETIKYWDFSTPELLK   91 (112)
Q Consensus        21 ~l~~~-~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~   91 (112)
                      .++++ +.+++++||..+++.+..++.+...+..++|..+ +.  +    .+.+++.||.|++||++......
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~--h----~v~s~ssDG~Vr~wD~Rs~~e~a  108 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSP--H----GVISCSSDGTVRLWDIRSQAESA  108 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCC--C----eeEEeccCCeEEEEEeecchhhh
Confidence            35555 4899999999999889999988888888888664 32  1    45599999999999998754433

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.53  E-value=9e-06  Score=51.53  Aligned_cols=99  Identities=13%  Similarity=0.070  Sum_probs=75.2

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CC-eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SN-TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~-~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      +|.+.|.- ..+..+++.++.|. || .+-++|..+++ ...+...-+.+..+..++++.       +++.+.....+-+
T Consensus       357 ~~~~~VrY-~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK-------~~vvaNdr~el~v  427 (668)
T COG4946         357 GKKGGVRY-RRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGK-------KVVVANDRFELWV  427 (668)
T ss_pred             CCCCceEE-EEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCc-------EEEEEcCceEEEE
Confidence            35555665 66777777788887 75 89999999875 566666778899999999995       6667888888888


Q ss_pred             EeCCCCceEEEEecC-CCEEEEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDVK-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~  111 (112)
                      .|+.+|+....-+.. .-+....|+|+++++
T Consensus       428 ididngnv~~idkS~~~lItdf~~~~nsr~i  458 (668)
T COG4946         428 IDIDNGNVRLIDKSEYGLITDFDWHPNSRWI  458 (668)
T ss_pred             EEecCCCeeEecccccceeEEEEEcCCceeE
Confidence            899998764333322 278889999999875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.50  E-value=4.3e-06  Score=52.89  Aligned_cols=95  Identities=9%  Similarity=0.044  Sum_probs=58.7

Q ss_pred             cCCCeEEcCCCCEEEEE-c---CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            9 VSSPPAFSNDVKRLLVC-T---SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~-~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      ... ..|+|||+.++.. +   +..|.++|+.+++ ...+...........|+|+++   +++ +.........|+++|+
T Consensus       235 ~~~-~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~---~I~-F~Sdr~g~~~Iy~~dl  308 (419)
T PRK04043        235 LVV-SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDK---RIV-FVSDRLGYPNIFMKKL  308 (419)
T ss_pred             EEe-eEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCC---EEE-EEECCCCCceEEEEEC
Confidence            344 7899999877654 3   3678888988775 455554433334557999995   332 2211222236888898


Q ss_pred             CCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           85 STPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      .+++..+.......  ...|+|+|+.+
T Consensus       309 ~~g~~~rlt~~g~~--~~~~SPDG~~I  333 (419)
T PRK04043        309 NSGSVEQVVFHGKN--NSSVSTYKNYI  333 (419)
T ss_pred             CCCCeEeCccCCCc--CceECCCCCEE
Confidence            87766443332222  34899999876

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.47  E-value=1.9e-07  Score=58.33  Aligned_cols=97  Identities=16%  Similarity=0.162  Sum_probs=81.8

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      ..|.. +.|-|-.-+|++++ .|.++.-|+.+|+.+..+....+.+..+.-+|-.       +++-.|...|++.+|...
T Consensus       210 ~~v~r-LeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N-------aVih~GhsnGtVSlWSP~  281 (545)
T KOG1272|consen  210 IRVAR-LEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN-------AVIHLGHSNGTVSLWSPN  281 (545)
T ss_pred             Cchhh-hcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc-------ceEEEcCCCceEEecCCC
Confidence            34555 78888887888888 6999999999999888888777888888888877       377789999999999998


Q ss_pred             CCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           86 TPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        86 ~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ..+++..+-.|. +|.++++.++|.++
T Consensus       282 skePLvKiLcH~g~V~siAv~~~G~YM  308 (545)
T KOG1272|consen  282 SKEPLVKILCHRGPVSSIAVDRGGRYM  308 (545)
T ss_pred             CcchHHHHHhcCCCcceEEECCCCcEE
Confidence            888877776666 99999999999986

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.47  E-value=4.1e-07  Score=58.15  Aligned_cols=79  Identities=22%  Similarity=0.331  Sum_probs=63.5

Q ss_pred             ccCCCCCcCCCeEEcCC--CCEEEEEc-CCeEEEEeCCC----------CceeeeccccCCceEEEEEecCCCCccceeE
Q 033738            2 IRGGRSYVSSPPAFSND--VKRLLVCT-SNTVSIFSTST----------GLQISSLEGHTAPVTTVIVVPASTPATKILS   68 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~--~~~l~~~~-~~~v~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   68 (112)
                      -+||+..|++ .+|-|.  .+.+++|. |..|+++|+..          ......+..|...|..++..|+++      .
T Consensus        89 ~TgHtaNIFs-vKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P------h  161 (758)
T KOG1310|consen   89 STGHTANIFS-VKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP------H  161 (758)
T ss_pred             ecccccceeE-EeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC------c
Confidence            3689999998 999985  35667776 99999999974          123455667888899999999986      3


Q ss_pred             EEEeeecCCcEEEEeCCCC
Q 033738           69 YCWTASLDETIKYWDFSTP   87 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~   87 (112)
                      .+.+++.||+++-+|+++.
T Consensus       162 tfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  162 TFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             eEEEecCCcceeeecccCC
Confidence            5669999999999999863

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.46  E-value=1.4e-06  Score=55.98  Aligned_cols=97  Identities=16%  Similarity=0.216  Sum_probs=73.1

Q ss_pred             cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738            9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      |++ ++|+.+|-.++.|+ .|.+.+||+++.+++..-. ....++..+.|.+.+. +.+++    + .....+++||-.+
T Consensus       231 vTa-l~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~-q~~v~----S-~Dk~~~kiWd~~~  303 (703)
T KOG2321|consen  231 VTA-LKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ-QNKVV----S-MDKRILKIWDECT  303 (703)
T ss_pred             ceE-EEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC-CceEE----e-cchHHhhhccccc
Confidence            676 99999999999998 8999999999876554332 3456788999977632 12222    3 4457899999999


Q ss_pred             CceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           87 PELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      |+....+.....+..+++-|++-++|
T Consensus       304 Gk~~asiEpt~~lND~C~~p~sGm~f  329 (703)
T KOG2321|consen  304 GKPMASIEPTSDLNDFCFVPGSGMFF  329 (703)
T ss_pred             CCceeeccccCCcCceeeecCCceEE
Confidence            99988887777888888888776654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=2.5e-06  Score=55.22  Aligned_cols=85  Identities=14%  Similarity=0.078  Sum_probs=68.7

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceE-EEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVT-TVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL   90 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~   90 (112)
                      +.|+|.-..+|++. +|.+.+..++ .+.+..++.++..++ +++|.|||.       .++.+-.||+|++.|..+|..+
T Consensus        26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-------llaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-------LLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-------EEEEEecCCeEEEEEccCCCce
Confidence            78999999999998 8999888888 556778876666666 999999995       7779999999999999998877


Q ss_pred             EE--EecCCCEEEEEEc
Q 033738           91 KT--IDVKFPIFSMVRG  105 (112)
Q Consensus        91 ~~--~~~~~~v~~~~~~  105 (112)
                      ..  +....++..+-|.
T Consensus        98 ~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWD  114 (665)
T ss_pred             eccccccccchheeecc
Confidence            66  3333466666665

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=1.9e-06  Score=53.14  Aligned_cols=78  Identities=17%  Similarity=0.198  Sum_probs=63.7

Q ss_pred             ccCCCCCcCCCeEEcCCCC-EEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVK-RLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~-~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.+|...|.+ +++||..+ ++..++ +..|++.|+.+......+..+ ..+++++|.-+..      .++..|..+|.|
T Consensus       189 lp~~g~~Ird-lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~------h~IYaGl~nG~V  260 (463)
T KOG1645|consen  189 LPGEGSFIRD-LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER------HVIYAGLQNGMV  260 (463)
T ss_pred             ccccchhhhh-hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc------ceeEEeccCceE
Confidence            5667778888 99999887 556667 899999999988777777766 7789999988875      356688899999


Q ss_pred             EEEeCCCC
Q 033738           80 KYWDFSTP   87 (112)
Q Consensus        80 ~~~~~~~~   87 (112)
                      .+||++..
T Consensus       261 lvyD~R~~  268 (463)
T KOG1645|consen  261 LVYDMRQP  268 (463)
T ss_pred             EEEEccCC
Confidence            99999854

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.38  E-value=2.8e-05  Score=48.13  Aligned_cols=77  Identities=12%  Similarity=0.125  Sum_probs=58.8

Q ss_pred             CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee---------cCCcEEEEeCCCCceEEEEecCCC
Q 033738           28 NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS---------LDETIKYWDFSTPELLKTIDVKFP   98 (112)
Q Consensus        28 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~~~~~~~~~~~~~~~~~~~   98 (112)
                      +.+.++|..+.+.+..+.....+- .+ ++|+++      .++++.+         .+..|.+||..+.+.+..+..+..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~------~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~   98 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGS------FFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG   98 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCC------EEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence            789999999998888887655443 34 899986      2344555         678999999999999888875332


Q ss_pred             --------EEEEEEcCCCcEeC
Q 033738           99 --------IFSMVRGKKGFAVF  112 (112)
Q Consensus        99 --------v~~~~~~~~~~~~~  112 (112)
                              ...++++|||+++|
T Consensus        99 p~~~~~~~~~~~~ls~dgk~l~  120 (352)
T TIGR02658        99 PRFLVGTYPWMTSLTPDNKTLL  120 (352)
T ss_pred             chhhccCccceEEECCCCCEEE
Confidence                    33788999999875

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.34  E-value=7.4e-05  Score=46.23  Aligned_cols=94  Identities=15%  Similarity=0.121  Sum_probs=60.5

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCC-Cceeee---cc----------ccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTST-GLQISS---LE----------GHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      ++++|++++|+++.  ++.+.++++.. +.....   +.          .......++.++|+++      -++++.-..
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~------~v~v~dlG~  165 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR------FVYVPDLGA  165 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS------EEEEEETTT
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC------EEEEEecCC
Confidence            78899999999887  79999999876 332211   10          1223457889999985      123344445


Q ss_pred             CcEEEEeCCCCc--eE--EEE--ecCCCEEEEEEcCCCcEeC
Q 033738           77 ETIKYWDFSTPE--LL--KTI--DVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        77 ~~i~~~~~~~~~--~~--~~~--~~~~~v~~~~~~~~~~~~~  112 (112)
                      ..|++|++....  ..  ..+  ......+.+.|+|+|+++|
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Y  207 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAY  207 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEE
T ss_pred             CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEE
Confidence            689999887654  21  222  2334788899999999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=7.5e-06  Score=52.61  Aligned_cols=90  Identities=16%  Similarity=0.164  Sum_probs=65.0

Q ss_pred             eEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec-----------CCcEEE
Q 033738           13 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL-----------DETIKY   81 (112)
Q Consensus        13 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------d~~i~~   81 (112)
                      +.|||.|.+|++-.-.-|.+|--.+...+..+. |. .|..+.|||...       |+++-+.           ...+.+
T Consensus       216 v~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~Ek-------YLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  216 VRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEK-------YLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             EEecCCceEEEEEeccceeeecCccHHHHHhcc-CC-CceeeecCCccc-------eEEEecCCccccCcccCCCceEEE
Confidence            789999999998886678899766655555554 43 478999999984       6666432           257999


Q ss_pred             EeCCCCceEEEEec--CC-CEE-EEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDV--KF-PIF-SMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~--~~-~v~-~~~~~~~~~~~  111 (112)
                      ||+++|...+.+..  .. ..+ -..|+.|++++
T Consensus       287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~  320 (698)
T KOG2314|consen  287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYF  320 (698)
T ss_pred             EEccccchhcceeccCCCccccceEEeccCCcee
Confidence            99999988777765  22 232 24788887765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.28  E-value=1.4e-05  Score=55.49  Aligned_cols=77  Identities=12%  Similarity=0.084  Sum_probs=57.1

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCC--c-----eeeeccccCCceEEEEEecCCCCccceeEEEEe
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTG--L-----QISSLEGHTAPVTTVIVVPASTPATKILSYCWT   72 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~--~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   72 (112)
                      |..|...+.. ++.+++. .++++|+ ||+|++|+.+.-  .     ....+...+..+.++...+.+.       .++.
T Consensus      1044 L~Ehs~~v~k-~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-------~~Av 1115 (1431)
T KOG1240|consen 1044 LHEHSSAVIK-LAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-------QFAV 1115 (1431)
T ss_pred             hhhccccccc-eeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-------eEEE
Confidence            4567788887 7777655 9999999 899999998642  1     1122233466788888888885       6778


Q ss_pred             eecCCcEEEEeCCC
Q 033738           73 ASLDETIKYWDFST   86 (112)
Q Consensus        73 ~~~d~~i~~~~~~~   86 (112)
                      ++.||.+++.++.-
T Consensus      1116 ~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDH 1129 (1431)
T ss_pred             EcCCCeEEEEEccc
Confidence            89999999998764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.27  E-value=9.5e-07  Score=55.57  Aligned_cols=76  Identities=20%  Similarity=0.294  Sum_probs=61.7

Q ss_pred             ccCCCCC--cCCCeE-EcCCCCEEEEEcC-CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            2 IRGGRSY--VSSPPA-FSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         2 ~~~h~~~--v~~~~~-~~~~~~~l~~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      ++||.+.  |.+ +- |-|...++++|+| |.|.+|+-.+++.+....+...-|+|+.=+|--+       ++++.+-|.
T Consensus       387 YKGHrN~~TVKg-VNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~P-------vLAsSGid~  458 (559)
T KOG1334|consen  387 YKGHRNSRTVKG-VNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLP-------VLASSGIDH  458 (559)
T ss_pred             hcccccccccce-eeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCc-------hhhccCCcc
Confidence            6788653  554 43 5688899999995 9999999998887777777666788999888876       778999999


Q ss_pred             cEEEEeCC
Q 033738           78 TIKYWDFS   85 (112)
Q Consensus        78 ~i~~~~~~   85 (112)
                      .|+||...
T Consensus       459 DVKIWTP~  466 (559)
T KOG1334|consen  459 DVKIWTPL  466 (559)
T ss_pred             ceeeecCC
Confidence            99999864

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.24  E-value=0.0002  Score=42.15  Aligned_cols=95  Identities=18%  Similarity=0.163  Sum_probs=66.2

Q ss_pred             cCCCeEEcCCCCEEEEE-c-CCeEEEEeCCCCce-e---e---eccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            9 VSSPPAFSNDVKRLLVC-T-SNTVSIFSTSTGLQ-I---S---SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~-~-~~~v~~~~~~~~~~-~---~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      ... ++|+||++.|+.. + .+.|..+++..... +   .   .+....+..-.+++..++.       ++++....+.|
T Consensus       136 pNG-i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-------l~va~~~~~~I  207 (246)
T PF08450_consen  136 PNG-IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-------LWVADWGGGRI  207 (246)
T ss_dssp             EEE-EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--------EEEEEETTTEE
T ss_pred             ccc-eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-------EEEEEcCCCEE
Confidence            345 8999999988765 4 68899999853211 1   1   2222223356889999885       56677778899


Q ss_pred             EEEeCCCCceEEEEecC-CCEEEEEE-cCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVK-FPIFSMVR-GKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~~~~  112 (112)
                      .+++.+ |+.+..+..+ ..+++++| .++.+.||
T Consensus       208 ~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~  241 (246)
T PF08450_consen  208 VVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY  241 (246)
T ss_dssp             EEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred             EEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence            999987 8888888877 48999999 46666654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.23  E-value=1.2e-05  Score=55.21  Aligned_cols=95  Identities=14%  Similarity=0.152  Sum_probs=64.6

Q ss_pred             cCCCCC--cCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeec--ccc---CCceEEEEEecCCCCccceeEEEEee
Q 033738            3 RGGRSY--VSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSL--EGH---TAPVTTVIVVPASTPATKILSYCWTA   73 (112)
Q Consensus         3 ~~h~~~--v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~--~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~   73 (112)
                      ..|...  |.. +.+.+.| ..|++|+ +|.|++||++.......+  ..+   ++..+++..++..+       ++++|
T Consensus      1251 R~h~~~~~Iv~-~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-------iiAsG 1322 (1387)
T KOG1517|consen 1251 REHNDVEPIVH-LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-------IIASG 1322 (1387)
T ss_pred             cccCCccccee-EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-------eeeec
Confidence            456665  777 8888876 3588888 999999999874222222  111   23488999999886       67777


Q ss_pred             ecCCcEEEEeCCCCceEEEEec------C--CCEEEEEEcCC
Q 033738           74 SLDETIKYWDFSTPELLKTIDV------K--FPIFSMVRGKK  107 (112)
Q Consensus        74 ~~d~~i~~~~~~~~~~~~~~~~------~--~~v~~~~~~~~  107 (112)
                      +. +.+++|++. |+.+..++.      .  ..+.+++|+|-
T Consensus      1323 s~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1323 SA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred             Cc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecch
Confidence            77 999999986 444333321      1  15678888873

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.23  E-value=0.00011  Score=44.49  Aligned_cols=95  Identities=15%  Similarity=0.303  Sum_probs=67.5

Q ss_pred             eEEcCCCCEEEEEc-C-----CeEEEEeCC-CCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec----------
Q 033738           13 PAFSNDVKRLLVCT-S-----NTVSIFSTS-TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL----------   75 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~-----~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----------   75 (112)
                      -.||+||++|++.- |     |.|-+||.. ..+.+..+..+.-.-..+.+.|+++   .|  .++.++-          
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~---tL--vVANGGI~Thpd~GR~k  130 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGE---TL--VVANGGIETHPDSGRAK  130 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCC---EE--EEEcCCCccCcccCcee
Confidence            47999999999874 3     889999998 5677788887765567788999985   12  1223321          


Q ss_pred             ------CCcEEEEeCCCCceEEEEec----CC-CEEEEEEcCCCcEeC
Q 033738           76 ------DETIKYWDFSTPELLKTIDV----KF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        76 ------d~~i~~~~~~~~~~~~~~~~----~~-~v~~~~~~~~~~~~~  112 (112)
                            +..+.+.|..+|+.+.+...    +. .+.-+++.++|..++
T Consensus       131 LNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~  178 (305)
T PF07433_consen  131 LNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAF  178 (305)
T ss_pred             cChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEE
Confidence                  23566667788888777543    33 789999999887653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.23  E-value=0.00017  Score=44.62  Aligned_cols=94  Identities=22%  Similarity=0.251  Sum_probs=59.9

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCC--CCce--eeecc---c---cCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTS--TGLQ--ISSLE---G---HTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~--~~~~--~~~~~---~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.|+|++++++...  ++.|.++++.  .+..  +..+.   .   .......++++|+++      -++++......|.
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~------~lyvsnr~~~sI~  270 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR------FLYVSNRGSNSIS  270 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS------EEEEEECTTTEEE
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC------EEEEEeccCCEEE
Confidence            78999999888776  6999999887  3321  11111   1   112467899999996      2344555677899


Q ss_pred             EEeCC--CCce--EEEEec-CCCEEEEEEcCCCcEeC
Q 033738           81 YWDFS--TPEL--LKTIDV-KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~--~~~~--~~~~~~-~~~v~~~~~~~~~~~~~  112 (112)
                      ++++.  +|..  +..+.. ....+.+.++|+|++++
T Consensus       271 vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~  307 (345)
T PF10282_consen  271 VFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLY  307 (345)
T ss_dssp             EEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEE
T ss_pred             EEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEE
Confidence            99983  3433  333333 33678899999999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.20  E-value=6.5e-06  Score=50.12  Aligned_cols=85  Identities=15%  Similarity=0.246  Sum_probs=59.8

Q ss_pred             CCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCCce---eeeccccCCceEEEEE--ecCCCCccceeEEEEeeecCC
Q 033738            5 GRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQ---ISSLEGHTAPVTTVIV--VPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         5 h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      |...|.+ +..-. +++.|.+.+ +|.|++||++.-++   +.+..+|.....-+-+  .+.+.       .+++++.|-
T Consensus       297 h~Ssvts-lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-------~I~s~GdDc  368 (425)
T KOG2695|consen  297 HDSSVTS-LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-------SIFSVGDDC  368 (425)
T ss_pred             cCcchhh-hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-------eEEEccCee
Confidence            5566665 66554 677777777 89999999976555   6666666544333322  33332       556899999


Q ss_pred             cEEEEeCCCCceEEEEecCC
Q 033738           78 TIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        78 ~i~~~~~~~~~~~~~~~~~~   97 (112)
                      ..|+|.++.|..+.+++.+.
T Consensus       369 ytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  369 YTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             EEEEEecccCceeeccCCCC
Confidence            99999999999988887654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.18  E-value=2.3e-05  Score=49.71  Aligned_cols=92  Identities=17%  Similarity=0.174  Sum_probs=57.7

Q ss_pred             eEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC--cEEEEeCCC
Q 033738           13 PAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE--TIKYWDFST   86 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~~~~~~~   86 (112)
                      .+|+|||+.++...  |  -.|.++|+..+. ...+....+.-..=.|+|+|+   +++   .+.+..|  .|.+++.+.
T Consensus       243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~---~iv---f~Sdr~G~p~I~~~~~~g  315 (425)
T COG0823         243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGS---KIV---FTSDRGGRPQIYLYDLEG  315 (425)
T ss_pred             ccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCC---EEE---EEeCCCCCcceEEECCCC
Confidence            78999999888775  4  467788887665 444554444334567899995   332   3344444  566667776


Q ss_pred             CceEEEEecCCCEEEEEEcCCCcEe
Q 033738           87 PELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +...+.......-....|+|+|+++
T Consensus       316 ~~~~riT~~~~~~~~p~~SpdG~~i  340 (425)
T COG0823         316 SQVTRLTFSGGGNSNPVWSPDGDKI  340 (425)
T ss_pred             CceeEeeccCCCCcCccCCCCCCEE
Confidence            5553333333333377899999876

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.15  E-value=4.2e-06  Score=49.17  Aligned_cols=72  Identities=24%  Similarity=0.268  Sum_probs=56.7

Q ss_pred             CcCCCeEEcCCCCEE-EEEc-CCeEEEEeCCCCcee-eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            8 YVSSPPAFSNDVKRL-LVCT-SNTVSIFSTSTGLQI-SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l-~~~~-~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      .|.+ ++-+|..+.+ ++|+ ||.+-+||.+....+ ..+..|+.+++.+-|+|..+  .+++    +++.||.+..||.
T Consensus       181 ~v~~-l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--~~Lf----t~sedGslw~wda  253 (319)
T KOG4714|consen  181 AVTA-LCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--EHLF----TCSEDGSLWHWDA  253 (319)
T ss_pred             cchh-hhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--hhee----EecCCCcEEEEcC
Confidence            3665 8888876554 5666 799999999876433 46678999999999999887  5555    9999999999997


Q ss_pred             CC
Q 033738           85 ST   86 (112)
Q Consensus        85 ~~   86 (112)
                      .+
T Consensus       254 s~  255 (319)
T KOG4714|consen  254 ST  255 (319)
T ss_pred             CC
Confidence            63

>smart00320 WD40 WD40 repeats

Probab=98.14  E-value=1.8e-05  Score=31.89  Aligned_cols=37  Identities=49%  Similarity=0.769  Sum_probs=29.9

Q ss_pred             eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738           40 QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus        40 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      ....+..+...+.++.|++.+.       .+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGK-------YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCC-------EEEEecCCCeEEEcC
Confidence            3455566778899999998874       677999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.13  E-value=6.3e-05  Score=49.15  Aligned_cols=74  Identities=24%  Similarity=0.263  Sum_probs=53.3

Q ss_pred             CCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCce--ee----eccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            7 SYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQ--IS----SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         7 ~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~--~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      ..|.+ ++|+|.. ++++.|. +|.|.+||++.+..  ..    ....|..++..+.|-.+..+ ..    +++++.||.
T Consensus       243 s~v~~-~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~-~~----f~s~ssDG~  316 (555)
T KOG1587|consen  243 SEVTC-LKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN-TE----FFSLSSDGS  316 (555)
T ss_pred             CceeE-EEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC-Cc----eEEEecCCc
Confidence            45676 9999965 5556666 89999999987543  21    12357788899999876642 22    448888999


Q ss_pred             EEEEeCCC
Q 033738           79 IKYWDFST   86 (112)
Q Consensus        79 i~~~~~~~   86 (112)
                      |..|+++.
T Consensus       317 i~~W~~~~  324 (555)
T KOG1587|consen  317 ICSWDTDM  324 (555)
T ss_pred             Eeeeeccc
Confidence            99998763

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.12  E-value=2.3e-05  Score=52.36  Aligned_cols=92  Identities=20%  Similarity=0.207  Sum_probs=71.3

Q ss_pred             eEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCcc------ceeEEEEeeecCCcEEEEeCCC
Q 033738           13 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPAT------KILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus        13 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      +.|+|.| +++.|+...|.+.|..+-+.+..+.-|...|+.+.|.|...+..      ..+ +++++...|.|.+||...
T Consensus        21 ~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~l-liAsaD~~GrIil~d~~~   98 (1062)
T KOG1912|consen   21 ADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQL-LIASADISGRIILVDFVL   98 (1062)
T ss_pred             cccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccce-eEEeccccCcEEEEEehh
Confidence            7888866 77888888999999988888888888999999999998532101      112 577888889999999998


Q ss_pred             CceEEEEecCC-CEEEEEEcC
Q 033738           87 PELLKTIDVKF-PIFSMVRGK  106 (112)
Q Consensus        87 ~~~~~~~~~~~-~v~~~~~~~  106 (112)
                      +..+..+..+. ++..++|-+
T Consensus        99 ~s~~~~l~~~~~~~qdl~W~~  119 (1062)
T KOG1912|consen   99 ASVINWLSHSNDSVQDLCWVP  119 (1062)
T ss_pred             hhhhhhhcCCCcchhheeeee
Confidence            87777776665 777777754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.11  E-value=0.00037  Score=43.30  Aligned_cols=94  Identities=17%  Similarity=0.169  Sum_probs=63.3

Q ss_pred             EEcC-CCCEEEEEcCCeEEEEeCCCC-----ceeeeccc-------cCCceEEEEEecCCCCccceeEEEEeeec-----
Q 033738           14 AFSN-DVKRLLVCTSNTVSIFSTSTG-----LQISSLEG-------HTAPVTTVIVVPASTPATKILSYCWTASL-----   75 (112)
Q Consensus        14 ~~~~-~~~~l~~~~~~~v~~~~~~~~-----~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----   75 (112)
                      .+.+ +|+++.....|.|.+.|+...     +....+..       ..+...-+++++++.   ++  |++.-+.     
T Consensus       200 ~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~---~l--yV~~~~~~~~th  274 (352)
T TIGR02658       200 AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD---RI--YLLADQRAKWTH  274 (352)
T ss_pred             ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC---EE--EEEecCCccccc
Confidence            3455 777776666799999996432     22222211       122334589999884   22  2223222     


Q ss_pred             ---CCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCc-EeC
Q 033738           76 ---DETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGF-AVF  112 (112)
Q Consensus        76 ---d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~  112 (112)
                         .+.+.++|..+++.+..+.....+..++++||++ .+|
T Consensus       275 k~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~ly  315 (352)
T TIGR02658       275 KTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLY  315 (352)
T ss_pred             cCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEE
Confidence               2589999999999999999888999999999998 654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.08  E-value=0.00014  Score=43.59  Aligned_cols=89  Identities=12%  Similarity=0.171  Sum_probs=62.8

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCce--eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC-CCc
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS-TPE   88 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~   88 (112)
                      +.|++.+..++++. +|.+.+.+...+..  ...++.|+-+.+...|+...+      .++.+|+.|+.+..||++ .++
T Consensus       127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p------nlvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP------NLVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC------ceEEecCCCceEEEEEecCCcc
Confidence            67888888777775 78888665544433  336778888888888887665      367799999999999998 444


Q ss_pred             eEEE-EecC-CCEEEEEEcCC
Q 033738           89 LLKT-IDVK-FPIFSMVRGKK  107 (112)
Q Consensus        89 ~~~~-~~~~-~~v~~~~~~~~  107 (112)
                      .+.. .+-| ..|.++.-+|.
T Consensus       201 ~i~~n~kvH~~GV~SI~ss~~  221 (339)
T KOG0280|consen  201 FIWHNSKVHTSGVVSIYSSPP  221 (339)
T ss_pred             eeeecceeeecceEEEecCCC
Confidence            4433 2223 37777766654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.08  E-value=0.00031  Score=43.02  Aligned_cols=96  Identities=16%  Similarity=0.234  Sum_probs=66.6

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCcee----eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQI----SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      +.. ..+.|++++|++..  -..|.+|++..++..    ..++ ....-..+.|+|+++    +  .++..-.+++|-+|
T Consensus       147 ~H~-a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k----~--aY~v~EL~stV~v~  218 (346)
T COG2706         147 VHS-ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGK----Y--AYLVNELNSTVDVL  218 (346)
T ss_pred             cce-eeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcCCCc----E--EEEEeccCCEEEEE
Confidence            554 78899999999887  478999999866422    2222 334457899999996    2  23456678899999


Q ss_pred             eCCCC--c--eEEEE-------ecCCCEEEEEEcCCCcEeC
Q 033738           83 DFSTP--E--LLKTI-------DVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        83 ~~~~~--~--~~~~~-------~~~~~v~~~~~~~~~~~~~  112 (112)
                      .+...  +  .++.+       ....+..++..+++|++||
T Consensus       219 ~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY  259 (346)
T COG2706         219 EYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY  259 (346)
T ss_pred             EEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence            88763  2  22222       1223788899999999886

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.08  E-value=2.6e-05  Score=49.49  Aligned_cols=97  Identities=19%  Similarity=0.182  Sum_probs=62.0

Q ss_pred             CcCCCeEEcCCCCEEEEEc----C-CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC--cEE
Q 033738            8 YVSSPPAFSNDVKRLLVCT----S-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE--TIK   80 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~----~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~   80 (112)
                      .+.. .+|+|+++.++...    . ..+.++++++++...... ..+.-..-+|+|+++   +++   ++...|+  .|+
T Consensus       194 ~~~~-p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~---~l~---f~~~rdg~~~iy  265 (425)
T COG0823         194 LILT-PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS---KLA---FSSSRDGSPDIY  265 (425)
T ss_pred             ceec-cccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC---EEE---EEECCCCCccEE
Confidence            4444 78999998877664    2 358899998876444333 223334668999995   333   3444444  567


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      ++|+..+...+.......-....|+|+|+.++
T Consensus       266 ~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~iv  297 (425)
T COG0823         266 LMDLDGKNLPRLTNGFGINTSPSWSPDGSKIV  297 (425)
T ss_pred             EEcCCCCcceecccCCccccCccCCCCCCEEE
Confidence            77888776444223333444789999998764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=2.7e-05  Score=49.37  Aligned_cols=102  Identities=17%  Similarity=0.164  Sum_probs=71.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      |.+|.+.|.. +.|...|..|++++ |..+.+||...++....+. +|...|....|-|... +.    .+++++.||.+
T Consensus       138 L~~H~GcVnt-V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~-d~----ti~~~s~dgqv  211 (559)
T KOG1334|consen  138 LNKHKGCVNT-VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSG-DR----TIVTSSRDGQV  211 (559)
T ss_pred             ccCCCCccce-eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCC-Cc----CceeccccCce
Confidence            5679999998 99999999999999 7999999998877665554 5777777667777542 01    45699999999


Q ss_pred             EEEeCCC-CceE--EEEecCC-CEEEEEEcCCCc
Q 033738           80 KYWDFST-PELL--KTIDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        80 ~~~~~~~-~~~~--~~~~~~~-~v~~~~~~~~~~  109 (112)
                      ++-.+.. +.+.  ..+..|. ++.-++.-|+..
T Consensus       212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp  245 (559)
T KOG1334|consen  212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP  245 (559)
T ss_pred             eeeeeccccceecceecccccCccceeeecCCCC
Confidence            9876543 3222  1222222 666666555543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.99  E-value=1.6e-05  Score=48.41  Aligned_cols=78  Identities=14%  Similarity=0.236  Sum_probs=61.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc-eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.+|.+.+.+ ++|.+....|.++. |..+.+||+--.+ ....+.+|.+.|..+...+...       .+.+++.|+.|
T Consensus       193 ~~~h~~~~~~-l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~-------~l~S~~edg~i  264 (404)
T KOG1409|consen  193 FNGHTGEVTC-LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR-------QLISCGEDGGI  264 (404)
T ss_pred             EcCcccceEE-EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe-------eeeeccCCCeE
Confidence            5689999998 99999888898887 9999999985432 2356667888888776665552       45699999999


Q ss_pred             EEEeCCCC
Q 033738           80 KYWDFSTP   87 (112)
Q Consensus        80 ~~~~~~~~   87 (112)
                      -+||....
T Consensus       265 ~~w~mn~~  272 (404)
T KOG1409|consen  265 VVWNMNVK  272 (404)
T ss_pred             EEEeccce
Confidence            99998754

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.99  E-value=5.1e-06  Score=59.64  Aligned_cols=74  Identities=19%  Similarity=0.236  Sum_probs=58.1

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      +.|.+.+++ +++.|..+.|++|+ +|.|++||++..+..+.++.         +. ..       .++++++..|.+++
T Consensus      2333 ~~H~~gaT~-l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~-------~~f~~~ss~g~ikI 2394 (2439)
T KOG1064|consen 2333 TCHDGGATV-LAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TR-------EYFVTGSSEGNIKI 2394 (2439)
T ss_pred             eecCCCceE-EEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hh-------heeeccCcccceEE
Confidence            458888888 99999999999999 99999999987765555543         33 22       27789999999999


Q ss_pred             EeCCCCceEEEEe
Q 033738           82 WDFSTPELLKTID   94 (112)
Q Consensus        82 ~~~~~~~~~~~~~   94 (112)
                      |++..-..+.+++
T Consensus      2395 w~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2395 WRLSEFGLLHTFP 2407 (2439)
T ss_pred             EEccccchhhcCc
Confidence            9998765555544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.99  E-value=0.00055  Score=48.27  Aligned_cols=92  Identities=17%  Similarity=0.160  Sum_probs=61.1

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeee-------------cccc--------CCceEEEEEecCCCCccceeEE
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISS-------------LEGH--------TAPVTTVIVVPASTPATKILSY   69 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~-------------~~~~--------~~~v~~~~~~~~~~~~~~~~~~   69 (112)
                      ++++|+++.|+.+.  ++.|++||++++.....             +-..        -.....+++++++.       +
T Consensus       745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-------L  817 (1057)
T PLN02919        745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-------I  817 (1057)
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-------E
Confidence            88999998666554  69999999886542110             0000        01235788888884       6


Q ss_pred             EEeeecCCcEEEEeCCCCceEEEEecC--------------CCEEEEEEcCCCcEe
Q 033738           70 CWTASLDETIKYWDFSTPELLKTIDVK--------------FPIFSMVRGKKGFAV  111 (112)
Q Consensus        70 ~~~~~~d~~i~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~  111 (112)
                      +++...++.|++||..++.........              .....++++++|+.+
T Consensus       818 YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly  873 (1057)
T PLN02919        818 YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF  873 (1057)
T ss_pred             EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence            678888999999999877654333211              145678888888743

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.99  E-value=0.00039  Score=42.60  Aligned_cols=93  Identities=17%  Similarity=0.221  Sum_probs=63.8

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCC-Ccee--eeccccCCc----------eEEEEEecCCCCccceeEEEEeee-cC
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTST-GLQI--SSLEGHTAP----------VTTVIVVPASTPATKILSYCWTAS-LD   76 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~-~~~~--~~~~~~~~~----------v~~~~~~~~~~~~~~~~~~~~~~~-~d   76 (112)
                      ++++++|++++++.  .+.|.++.++. |...  .....|.+.          +....+.|+++       ++++.. .-
T Consensus        94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-------~l~v~DLG~  166 (346)
T COG2706          94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR-------YLVVPDLGT  166 (346)
T ss_pred             EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC-------EEEEeecCC
Confidence            78999999999998  59999999865 4211  122223333          67888999995       444443 33


Q ss_pred             CcEEEEeCCCCceEEE----EecCCCEEEEEEcCCCcEeC
Q 033738           77 ETIKYWDFSTPELLKT----IDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~  112 (112)
                      -++.+|++.+|.....    ++.....+-+.|+|++++.|
T Consensus       167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY  206 (346)
T COG2706         167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAY  206 (346)
T ss_pred             ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEE
Confidence            5799999987754322    23344778899999998765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.99  E-value=0.00026  Score=45.73  Aligned_cols=85  Identities=14%  Similarity=0.168  Sum_probs=69.9

Q ss_pred             CEEEEEc-CCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC
Q 033738           20 KRLLVCT-SNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK   96 (112)
Q Consensus        20 ~~l~~~~-~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~   96 (112)
                      ..++-|. .|.|.+|+...++....+.  .|.+.|.++.++.+..       .+.+++.|..+-.|+..++..++.+...
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-------ciyS~~ad~~v~~~~~~~~~~~~~~~~~  143 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-------CIYSVGADLKVVYILEKEKVIIRIWKEQ  143 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC-------ceEecCCceeEEEEecccceeeeeeccC
Confidence            4555665 7999999999887666665  5888999998887763       5669999999999999999988888776


Q ss_pred             C-CEEEEEEcCCCcEe
Q 033738           97 F-PIFSMVRGKKGFAV  111 (112)
Q Consensus        97 ~-~v~~~~~~~~~~~~  111 (112)
                      . .+.+++.+|||..+
T Consensus       144 ~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen  144 KPLVSSLCISPDGKIL  159 (541)
T ss_pred             CCccceEEEcCCCCEE
Confidence            6 88999999998765

>smart00320 WD40 WD40 repeats

Probab=97.98  E-value=1.5e-05  Score=32.09  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=27.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEe
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFS   34 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~   34 (112)
                      +..|...+.+ +.|+++++.+++++ |+.+++|+
T Consensus         8 ~~~~~~~i~~-~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        8 LKGHTGPVTS-VAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEecCCceeE-EEECCCCCEEEEecCCCeEEEcC
Confidence            3567788887 99999999999888 89999986

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.98  E-value=2e-05  Score=52.45  Aligned_cols=97  Identities=13%  Similarity=0.170  Sum_probs=69.1

Q ss_pred             CccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCc-eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            1 MIRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGL-QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      ++.||...+++ +-|+|.. ..+++++ |..+..||+++.. .+..+.........++|+...+       -+.+.+...
T Consensus       109 ~lhghsraitd-~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p-------~vlasshg~  180 (1081)
T KOG0309|consen  109 VLHGHSRAITD-INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDP-------NVLASSHGN  180 (1081)
T ss_pred             EEecCccceec-cccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCc-------chhhhccCC
Confidence            36789999998 9999976 6778888 9999999998754 3445555555667889988764       233566677


Q ss_pred             cEEEEeCCCC-ceEEEEecCC-CEEEEEEc
Q 033738           78 TIKYWDFSTP-ELLKTIDVKF-PIFSMVRG  105 (112)
Q Consensus        78 ~i~~~~~~~~-~~~~~~~~~~-~v~~~~~~  105 (112)
                      .+++||.+.| .++..++.+- .++.+.|+
T Consensus       181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn  210 (1081)
T KOG0309|consen  181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFN  210 (1081)
T ss_pred             ceEEEeccCCCcceEEecccceeeehHHHh
Confidence            8999999876 4455555543 44444443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.95  E-value=0.00044  Score=41.22  Aligned_cols=77  Identities=12%  Similarity=0.052  Sum_probs=56.6

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCcee-----eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQI-----SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      ..|+.....++++. ||++.+||++.....     ..-+.|.+.+..+.|++.+.    + .++.-.-.-+.+.+.|+++
T Consensus       209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~----l-DLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL----L-DLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc----c-eEEEEecCcceEEEEEccc
Confidence            67888888899998 999999999764322     23345888999999998763    2 2444555667899999998


Q ss_pred             CceEEEEe
Q 033738           87 PELLKTID   94 (112)
Q Consensus        87 ~~~~~~~~   94 (112)
                      +...+.+.
T Consensus       284 ~~~~q~I~  291 (344)
T KOG4532|consen  284 YVNHQVIV  291 (344)
T ss_pred             CceeeEEe
Confidence            87655543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.94  E-value=0.00023  Score=49.35  Aligned_cols=63  Identities=10%  Similarity=0.105  Sum_probs=49.3

Q ss_pred             CCCEEEEEc-CCeEEEEeCCCCc---eeeeccccCCc--eEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738           18 DVKRLLVCT-SNTVSIFSTSTGL---QISSLEGHTAP--VTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus        18 ~~~~l~~~~-~~~v~~~~~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      .|+.+++|. ||.+++||.+...   .+...+.|...  |..+.+.+.|-  .    -+++++.+|.|++||++.
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~--~----elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL--G----ELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC--c----ceeeeccCCeEEEEeccc
Confidence            368888887 9999999987542   34566667766  88999988774  2    355999999999999986

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.83  E-value=0.00013  Score=47.14  Aligned_cols=57  Identities=14%  Similarity=0.065  Sum_probs=44.1

Q ss_pred             cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           47 HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        47 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ....+.+++++|++.       .++.|+.||.+.+||...+.... .+..-....++|+|+|..+
T Consensus       258 L~s~v~~ca~sp~E~-------kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~  314 (545)
T PF11768_consen  258 LPSQVICCARSPSED-------KLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIF  314 (545)
T ss_pred             cCCcceEEecCcccc-------eEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEE
Confidence            456788999999985       66699999999999987664332 2333477889999999865

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.82  E-value=0.0015  Score=39.82  Aligned_cols=92  Identities=11%  Similarity=0.054  Sum_probs=64.7

Q ss_pred             eEEcCC-CCEEEEEc--CCeEEEEeCCCCceeeeccccCCceE--EEEEecCCCCccceeEEEEeeec-----CCcEEEE
Q 033738           13 PAFSND-VKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVT--TVIVVPASTPATKILSYCWTASL-----DETIKYW   82 (112)
Q Consensus        13 ~~~~~~-~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~-----d~~i~~~   82 (112)
                      ++.+|+ +..++.+.  .....+||..+++....+....+...  .-.|+++++       ++++.-.     .|.|-+|
T Consensus        10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~-------~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR-------LLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC-------EEEEeccccCCCcEEEEEE
Confidence            788884 56666665  46788999999987777765555433  447899995       4445433     4789999


Q ss_pred             eCC-CCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           83 DFS-TPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~-~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      |.. ....+..+..+. .--.+.+.|||+.|
T Consensus        83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tL  113 (305)
T PF07433_consen   83 DAARGYRRIGEFPSHGIGPHELLLMPDGETL  113 (305)
T ss_pred             ECcCCcEEEeEecCCCcChhhEEEcCCCCEE
Confidence            998 456667776655 55567788988654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=4.1e-05  Score=49.68  Aligned_cols=79  Identities=19%  Similarity=0.274  Sum_probs=57.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC-------ceeeeccccCCceEEEEEecCCCCccceeEEEEee
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG-------LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA   73 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   73 (112)
                      +.||++.|.. ++.-.+.+.+++++ |.+|++|.++..       .+...+..|..++..+.|-.+.+       ++  .
T Consensus       731 f~GH~~~iRa-i~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-------~i--~  800 (1034)
T KOG4190|consen  731 FTGHQEKIRA-IAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-------SI--A  800 (1034)
T ss_pred             ccCcHHHhHH-HHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-------ee--e
Confidence            5789998887 66555667777777 999999998642       23345567889999998877764       33  3


Q ss_pred             ecCCcEEEEeCCCCceE
Q 033738           74 SLDETIKYWDFSTPELL   90 (112)
Q Consensus        74 ~~d~~i~~~~~~~~~~~   90 (112)
                      +.|+-+.+||.--|+.+
T Consensus       801 ScD~giHlWDPFigr~L  817 (1034)
T KOG4190|consen  801 SCDGGIHLWDPFIGRLL  817 (1034)
T ss_pred             eccCcceeecccccchh
Confidence            55889999996555443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.81  E-value=9.8e-05  Score=49.35  Aligned_cols=96  Identities=16%  Similarity=0.154  Sum_probs=69.6

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc---------------eeeeccccCCceEEEEEecCCCCccceeEEEE
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL---------------QISSLEGHTAPVTTVIVVPASTPATKILSYCW   71 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   71 (112)
                      ...+ +.|+.+..++++|+ ||.+++..+.+..               .-..+.+|...|..+.|+....       -+.
T Consensus        16 kL~c-~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-------KLT   87 (1189)
T KOG2041|consen   16 KLHC-AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-------KLT   87 (1189)
T ss_pred             eEEE-EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-------ccc
Confidence            4456 89999999999999 9999988764321               1135568999999999987663       344


Q ss_pred             eeecCCcEEEEeCCCCceEEEEe---cCCCEEEEEEcCCCcEe
Q 033738           72 TASLDETIKYWDFSTPELLKTID---VKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        72 ~~~~d~~i~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~  111 (112)
                      +...+|.|-+|.+-+|.....+.   ..+-|.+++|+.+|..|
T Consensus        88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI  130 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI  130 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE
Confidence            78889999999987775433222   22368888998888754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.80  E-value=0.0018  Score=38.15  Aligned_cols=91  Identities=14%  Similarity=0.041  Sum_probs=53.9

Q ss_pred             eEEc-CCCCEEEEEcCCeEEEEeCCCCceeeeccc-----cCCceEEEEEecCCCCccceeEEEEeeecC--------Cc
Q 033738           13 PAFS-NDVKRLLVCTSNTVSIFSTSTGLQISSLEG-----HTAPVTTVIVVPASTPATKILSYCWTASLD--------ET   78 (112)
Q Consensus        13 ~~~~-~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d--------~~   78 (112)
                      +.+. +++.++++.. +.+.++|..+++.......     .....+.+++.++++       ++++....        +.
T Consensus        45 ~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-------ly~t~~~~~~~~~~~~g~  116 (246)
T PF08450_consen   45 MAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-------LYVTDSGGGGASGIDPGS  116 (246)
T ss_dssp             EEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--------EEEEEECCBCTTCGGSEE
T ss_pred             EEEEccCCEEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-------EEEEecCCCccccccccc
Confidence            5666 5555444444 4445558887753322221     234567899999995       44454432        45


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      +..++.. ++.......-...+.++|+|+++.+|
T Consensus       117 v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~ly  149 (246)
T PF08450_consen  117 VYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLY  149 (246)
T ss_dssp             EEEEETT-SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred             eEEECCC-CeEEEEecCcccccceEECCcchhee
Confidence            6667766 55544444444778999999998764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.77  E-value=0.0012  Score=39.42  Aligned_cols=92  Identities=13%  Similarity=-0.061  Sum_probs=62.7

Q ss_pred             cCCCeEEcCCCCEEEEEc-CCeEEEEeCCC-Cceeeec--cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTST-GLQISSL--EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      +.. +.+++|++++++.+ ...|..|.++. ++.+...  ......-.+..|+....       .++.+..||.+.+||+
T Consensus       161 ~ns-~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-------~FAv~~Qdg~~~I~DV  232 (344)
T KOG4532|consen  161 QNS-LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-------QFAVVFQDGTCAIYDV  232 (344)
T ss_pred             eee-eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-------eEEEEecCCcEEEEEe
Confidence            454 88999999999888 48899998865 3333222  22233346778888773       7889999999999999


Q ss_pred             CCCceE-E----EEecCC-CEEEEEEcCCC
Q 033738           85 STPELL-K----TIDVKF-PIFSMVRGKKG  108 (112)
Q Consensus        85 ~~~~~~-~----~~~~~~-~v~~~~~~~~~  108 (112)
                      +.-... .    +-+.|. .++.+.|++-|
T Consensus       233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  233 RNMATPMAEISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             cccccchhhhcccCCCCCCceEEEEecCCC
Confidence            863221 1    112233 78888888754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.74  E-value=0.00053  Score=48.23  Aligned_cols=86  Identities=16%  Similarity=0.202  Sum_probs=62.2

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeee-cCCcEEEE
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTAS-LDETIKYW   82 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~   82 (112)
                      .+.|+. ++.+|.+++++.|+ .|.+-+||++-+..+..+. ++..++..+..+|-.++.+..   +.++. ..+.+.+|
T Consensus      1195 hG~vTS-i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~---vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1195 HGLVTS-IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS---VSAGSSSNNEVSTW 1270 (1431)
T ss_pred             ccceeE-EEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE---EEecccCCCceeee
Confidence            467776 99999999999998 7999999999887776654 345667777777654311212   22333 57889999


Q ss_pred             eCCCCceEEEEec
Q 033738           83 DFSTPELLKTIDV   95 (112)
Q Consensus        83 ~~~~~~~~~~~~~   95 (112)
                      ++.+|.+-.++-.
T Consensus      1271 n~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWA 1283 (1431)
T ss_pred             ecccCcceEEEEc
Confidence            9999977666543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.70  E-value=0.00034  Score=43.46  Aligned_cols=87  Identities=17%  Similarity=0.103  Sum_probs=54.5

Q ss_pred             cCCCCEEEEEc----------CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738           16 SNDVKRLLVCT----------SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus        16 ~~~~~~l~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      |||++.++...          .+...++|+++++ ...+......+....|+|++.       .++.. .++.|++.+..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~-~~~l~~~~~~~~~~~~sP~g~-------~~~~v-~~~nly~~~~~   71 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE-ITPLTPPPPKLQDAKWSPDGK-------YIAFV-RDNNLYLRDLA   71 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE-EEESS-EETTBSEEEE-SSST-------EEEEE-ETTEEEEESST
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc-eEECcCCccccccceeecCCC-------eeEEE-ecCceEEEECC
Confidence            68888877643          2678999999875 444443356678899999995       22222 45789999987


Q ss_pred             CCceEEEEecC------------------CCEEEEEEcCCCcEe
Q 033738           86 TPELLKTIDVK------------------FPIFSMVRGKKGFAV  111 (112)
Q Consensus        86 ~~~~~~~~~~~------------------~~v~~~~~~~~~~~~  111 (112)
                      ++...+.....                  ..-..+-|+|||++|
T Consensus        72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~l  115 (353)
T PF00930_consen   72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYL  115 (353)
T ss_dssp             TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEE
T ss_pred             CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEE
Confidence            77444332211                  123567899999876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.70  E-value=0.0011  Score=42.70  Aligned_cols=96  Identities=15%  Similarity=0.072  Sum_probs=64.0

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc---CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC---Cc
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD---ET   78 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d---~~   78 (112)
                      -.+.|.. .+|.|+++.+++.+   +..+.++|++.. ....+.  +..-..+-|+|.++       +++.++.|   |.
T Consensus       273 ~~~pVhd-f~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r-------~il~agF~nl~gn  341 (561)
T COG5354         273 LKDPVHD-FTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHER-------YILFAGFDNLQGN  341 (561)
T ss_pred             cccccee-eeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCccc-------EEEEecCCccccc
Confidence            3677887 99999998877664   578889998744 333333  22235677899985       55565554   78


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +-+||.................-+.|+|+|+++
T Consensus       342 i~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~  374 (561)
T COG5354         342 IEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFY  374 (561)
T ss_pred             eEEeccCCceEEEEEeecCCceEeeccCCceEE
Confidence            999998755443322223355567899999875

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.69  E-value=6.2e-05  Score=46.06  Aligned_cols=103  Identities=13%  Similarity=0.107  Sum_probs=71.7

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCc---eeeeccccC-----CceEEEEEecCCCCccceeEEEEeee
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL---QISSLEGHT-----APVTTVIVVPASTPATKILSYCWTAS   74 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~---~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~   74 (112)
                      .+|+-.+.. +.++.|.+.++++.|-.|-+|.++-..   .+.-++++.     --+++..|+|...      ..++-.+
T Consensus       161 NaHtyhiNS-IS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c------n~f~YSS  233 (433)
T KOG1354|consen  161 NAHTYHINS-ISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC------NVFVYSS  233 (433)
T ss_pred             ccceeEeee-eeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc------cEEEEec
Confidence            357778887 999999999999999999999986422   122333332     2357788999764      3666788


Q ss_pred             cCCcEEEEeCCCCc-eE---EEEec-------------CCCEEEEEEcCCCcEeC
Q 033738           75 LDETIKYWDFSTPE-LL---KTIDV-------------KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        75 ~d~~i~~~~~~~~~-~~---~~~~~-------------~~~v~~~~~~~~~~~~~  112 (112)
                      ..|+|++.|++... |-   ..+..             -+.|..+.|+++|++++
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil  288 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL  288 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE
Confidence            89999999998421 11   11111             12578899999999873

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.68  E-value=0.0016  Score=46.10  Aligned_cols=70  Identities=9%  Similarity=0.082  Sum_probs=51.8

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-------------ccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-------------GHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      ++++++|+.+++-. ++.|++||..++.......             ..-.....+++++++.       ++++.+.++.
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-------lyVaDt~Nn~  881 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-------LFVADTNNSL  881 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-------EEEEECCCCE
Confidence            78899998777766 8999999998765332111             1112456889999985       6668888999


Q ss_pred             EEEEeCCCCce
Q 033738           79 IKYWDFSTPEL   89 (112)
Q Consensus        79 i~~~~~~~~~~   89 (112)
                      |++||+.++..
T Consensus       882 Irvid~~~~~~  892 (1057)
T PLN02919        882 IRYLDLNKGEA  892 (1057)
T ss_pred             EEEEECCCCcc
Confidence            99999988764

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.67  E-value=0.0011  Score=44.07  Aligned_cols=69  Identities=19%  Similarity=0.126  Sum_probs=49.8

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCce------------eeeccccCCceEEEEEecCCCCccceeEEEEeee
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQ------------ISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS   74 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   74 (112)
                      ... +.++|||++++.++  +.++.++|+++.+.            ..+.....++ ...+|.+++.       .+.+-.
T Consensus       323 PHG-V~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~-------aytslf  393 (635)
T PRK02888        323 PHG-VNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGN-------AYTTLF  393 (635)
T ss_pred             ccc-eEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCC-------EEEeEe
Confidence            345 89999999998887  79999999987542            2333333333 4568888874       455777


Q ss_pred             cCCcEEEEeCCC
Q 033738           75 LDETIKYWDFST   86 (112)
Q Consensus        75 ~d~~i~~~~~~~   86 (112)
                      -|..+-.||+.+
T Consensus       394 ~dsqv~kwn~~~  405 (635)
T PRK02888        394 LDSQIVKWNIEA  405 (635)
T ss_pred             ecceeEEEehHH
Confidence            789999999875

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.66  E-value=0.00084  Score=45.42  Aligned_cols=101  Identities=17%  Similarity=0.125  Sum_probs=70.0

Q ss_pred             ccCCCCCcCCCeEEcCCC-----------CEE-EEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeE
Q 033738            2 IRGGRSYVSSPPAFSNDV-----------KRL-LVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILS   68 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-----------~~l-~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   68 (112)
                      ++-|...|+. ++|.|..           +.+ +++. .|.|.+||...+..+..+..+..++..++|-+..+-.+.   
T Consensus        51 ie~h~s~V~~-VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd---  126 (1062)
T KOG1912|consen   51 IELHQSAVTS-VRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRD---  126 (1062)
T ss_pred             cccCccceeE-EEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchh---
Confidence            4557888887 9998742           233 3344 599999999888777778878888898888765431122   


Q ss_pred             EEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcC
Q 033738           69 YCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGK  106 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~  106 (112)
                      .++.......+.+|+..+|+......... ...++.+.|
T Consensus       127 ~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP  165 (1062)
T KOG1912|consen  127 VLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP  165 (1062)
T ss_pred             eeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCC
Confidence            23455667799999999998876665544 555566665

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.62  E-value=0.00015  Score=44.43  Aligned_cols=82  Identities=12%  Similarity=0.143  Sum_probs=57.1

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCce----eeeccccCCceEEEEEec-CCCCccceeEEEEeeecCCcEE
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQ----ISSLEGHTAPVTTVIVVP-ASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.|.+ +.|...++++..|. +|.|..+|++....    .....-|...|+++..-. ++.       ++.+.+-+|.|+
T Consensus       253 sDVfA-lQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q-------~LmaS~M~gkik  324 (425)
T KOG2695|consen  253 SDVFA-LQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQ-------KLMASDMTGKIK  324 (425)
T ss_pred             hhHHH-HHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccc-------eEeeccCcCcee
Confidence            35565 77777788888888 89999999986521    112223777788776544 442       566888999999


Q ss_pred             EEeCCCCce---EEEEecC
Q 033738           81 YWDFSTPEL---LKTIDVK   96 (112)
Q Consensus        81 ~~~~~~~~~---~~~~~~~   96 (112)
                      +||.+--++   +.+..+|
T Consensus       325 LyD~R~~K~~~~V~qYeGH  343 (425)
T KOG2695|consen  325 LYDLRATKCKKSVMQYEGH  343 (425)
T ss_pred             Eeeehhhhcccceeeeecc
Confidence            999886554   6666555

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.60  E-value=6.9e-05  Score=50.90  Aligned_cols=69  Identities=16%  Similarity=0.156  Sum_probs=57.7

Q ss_pred             cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      +.+ ++|+|..-.|+.+. .|.+.+|..++.+.-.....|..++..+.||++|.       .++++..-|.+.+|.+.
T Consensus        62 atS-LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~-------~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATS-LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGT-------VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhh-hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCC-------eEEEcCCCceeEEEEee
Confidence            344 89999888888887 69999999887765566667999999999999995       66699999999999765

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.59  E-value=0.0035  Score=39.98  Aligned_cols=90  Identities=11%  Similarity=0.130  Sum_probs=59.8

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceE-EEEEecCCC------------CccceeEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVT-TVIVVPAST------------PATKILSY   69 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~------------~~~~~~~~   69 (112)
                      +....+.. +..+|++++.++.. -|.|.++|+.++..++.+++....-. -+.......            +...++ +
T Consensus       305 D~~R~~~~-i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~-L  382 (415)
T PF14655_consen  305 DSKREGES-ICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF-L  382 (415)
T ss_pred             cCCceEEE-EEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE-E
Confidence            33445565 89999988777765 49999999999988888887654321 111111111            011233 5


Q ss_pred             EEeeecCCcEEEEeCCCCceEEEEec
Q 033738           70 CWTASLDETIKYWDFSTPELLKTIDV   95 (112)
Q Consensus        70 ~~~~~~d~~i~~~~~~~~~~~~~~~~   95 (112)
                      ++-+..-|.+.+|+++.|..+..+..
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEEe
Confidence            55677789999999999988777654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.57  E-value=0.0059  Score=37.49  Aligned_cols=95  Identities=16%  Similarity=0.130  Sum_probs=60.7

Q ss_pred             CcCCCeEEcCCCCEEEEEc--CCeEEEEeCCC--Cc---e--eeeccccCCceEEEEEecCCCCccceeEEEEeeecCC-
Q 033738            8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTST--GL---Q--ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE-   77 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~--~~---~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~-   77 (112)
                      .-+. ++||||++.++.+.  .+.+.-+++..  +.   .  ...+....+..-.++...++.       +.+++..++ 
T Consensus       164 ~~NG-la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-------lw~~a~~~g~  235 (307)
T COG3386         164 IPNG-LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-------LWVAAVWGGG  235 (307)
T ss_pred             ecCc-eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-------EEEecccCCc
Confidence            3455 99999999888875  48888887752  21   1  111112233334566666774       443444443 


Q ss_pred             cEEEEeCCCCceEEEEecC-CCEEEEEEc-CCCcEe
Q 033738           78 TIKYWDFSTPELLKTIDVK-FPIFSMVRG-KKGFAV  111 (112)
Q Consensus        78 ~i~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~~~  111 (112)
                      .|..|+.. |+.+..+..+ ..+.+++|- |+.+.|
T Consensus       236 ~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L  270 (307)
T COG3386         236 RVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTL  270 (307)
T ss_pred             eEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEE
Confidence            89999988 9999888888 477777774 344444

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.53  E-value=0.0058  Score=36.68  Aligned_cols=97  Identities=13%  Similarity=0.092  Sum_probs=55.2

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecccc-------CCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGH-------TAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      ++||||+..|+.+. .|+|+++|+... .+..+...       ...|..+.|-+......... -++....+|.++-+-+
T Consensus        49 l~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~v  126 (282)
T PF15492_consen   49 LAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLV  126 (282)
T ss_pred             EEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEE
Confidence            78999999999997 799999998743 33333321       23444555543321111111 2334555666665543


Q ss_pred             CC-----CceEEEEe--c--CCCEEEEEEcCCCcEe
Q 033738           85 ST-----PELLKTID--V--KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        85 ~~-----~~~~~~~~--~--~~~v~~~~~~~~~~~~  111 (112)
                      ..     ......+.  .  +..+.++.++|.-+.+
T Consensus       127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LL  162 (282)
T PF15492_consen  127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLL  162 (282)
T ss_pred             EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEE
Confidence            21     22222322  2  2378899999887655

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.53  E-value=0.00088  Score=43.63  Aligned_cols=98  Identities=19%  Similarity=0.211  Sum_probs=65.0

Q ss_pred             CCcCCCeEEcCCCCEEEEEc----CCeEEEEeCCC-Cce---eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            7 SYVSSPPAFSNDVKRLLVCT----SNTVSIFSTST-GLQ---ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~----~~~v~~~~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +.|.. .+|-|.|+.++.-+    ..++.+|..++ ...   +..+..  ...+.+.|+|.|.   .++ ..+-.+..|.
T Consensus       446 e~vi~-FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~---fvv-va~l~s~~g~  518 (698)
T KOG2314|consen  446 ESVIA-FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGR---FVV-VAALVSRRGD  518 (698)
T ss_pred             hheee-eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCc---EEE-EEEecccccc
Confidence            45666 89999998887654    27888988763 322   223322  3356889999994   333 3344456789


Q ss_pred             EEEEeCCCCceEEEE-ecCCCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTI-DVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  111 (112)
                      +.++|.....+..+- ..|...+.+.|.|.|+|+
T Consensus       519 l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYv  552 (698)
T KOG2314|consen  519 LEFYDTDYADLKDTASPEHFAATEVEWDPTGRYV  552 (698)
T ss_pred             eEEEecchhhhhhccCccccccccceECCCCCEE
Confidence            999998754443332 234477889999999886

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.50  E-value=0.00021  Score=49.00  Aligned_cols=78  Identities=24%  Similarity=0.305  Sum_probs=60.9

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC-CcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD-ETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d-~~i   79 (112)
                      |..|....++ ++|+.+.++|+.|+ .|.|++++..+|........|+..++.+.=+.++.   .   .+.+.++. ...
T Consensus      1097 frd~~~~fTc-~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs---~---~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1097 FRDETALFTC-IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGS---T---QLTSSSSSSPLS 1169 (1516)
T ss_pred             hhccccceee-EEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcc---e---eeeeccccCchH
Confidence            4556777777 99999999999999 89999999999988888899999999998888884   1   22233333 356


Q ss_pred             EEEeCCC
Q 033738           80 KYWDFST   86 (112)
Q Consensus        80 ~~~~~~~   86 (112)
                      .+|+..+
T Consensus      1170 aLW~~~s 1176 (1516)
T KOG1832|consen 1170 ALWDASS 1176 (1516)
T ss_pred             HHhcccc
Confidence            6887653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.50  E-value=0.00086  Score=44.57  Aligned_cols=92  Identities=13%  Similarity=0.194  Sum_probs=62.7

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~   89 (112)
                      -+++..+++++.|+ -|.+++|+-..+. ...++  +..+.+..+..++...       +.+.++..+.|.++.+..+.+
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~~e~-------lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSSVEY-------LVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecchhH-------hhhhhcCCceEEeehhhccCC
Confidence            45677789999998 6999999866554 33333  2344455666777763       566788889999998765432


Q ss_pred             E---EE--Eec--CCCEEEEEEcCCCcEeC
Q 033738           90 L---KT--IDV--KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        90 ~---~~--~~~--~~~v~~~~~~~~~~~~~  112 (112)
                      .   ..  ...  ...|+++.|++++..+|
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y  140 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLY  140 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEe
Confidence            1   11  111  23899999999998876

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.47  E-value=0.001  Score=29.13  Aligned_cols=33  Identities=9%  Similarity=0.066  Sum_probs=27.9

Q ss_pred             CceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738           49 APVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL   89 (112)
Q Consensus        49 ~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~   89 (112)
                      ..|..++|+|..+       +++.+..+|.+.++++ +++.
T Consensus        12 ~~v~~~~w~P~md-------LiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   12 SRVSCMSWCPTMD-------LIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CcEEEEEECCCCC-------EEEEEECCCeEEEEEC-CCcC
Confidence            4588999999996       8889999999999998 4543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.45  E-value=0.0052  Score=38.99  Aligned_cols=93  Identities=19%  Similarity=0.189  Sum_probs=55.8

Q ss_pred             eEEcCCCCEEEEE-c-C----CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee-c---------C
Q 033738           13 PAFSNDVKRLLVC-T-S----NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS-L---------D   76 (112)
Q Consensus        13 ~~~~~~~~~l~~~-~-~----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~---------d   76 (112)
                      ..++|||++++.+ + .    ..++++|+++++.+........ ...+.|.+++.      .++.+.. .         .
T Consensus       129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~------~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGK------GFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSS------EEEEEECSTTTSS-CCGCC
T ss_pred             eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCC------EEEEEEeCcccccccCCCC
Confidence            6789999998865 2 2    4699999999876542211111 12389999975      2223332 2         3


Q ss_pred             CcEEEEeCCCCce--EEEEecCC--C-EEEEEEcCCCcEeC
Q 033738           77 ETIKYWDFSTPEL--LKTIDVKF--P-IFSMVRGKKGFAVF  112 (112)
Q Consensus        77 ~~i~~~~~~~~~~--~~~~~~~~--~-v~~~~~~~~~~~~~  112 (112)
                      ..++.|.+.++..  ...+....  . ...+..++++++++
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~  242 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLF  242 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEE
T ss_pred             cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEE
Confidence            3477888776533  23443332  3 66788899998764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.41  E-value=0.0034  Score=41.83  Aligned_cols=93  Identities=10%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             CcCCCeEEcCCCCEEEEEc-------C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEe------
Q 033738            8 YVSSPPAFSNDVKRLLVCT-------S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT------   72 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-------~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------   72 (112)
                      .+.. .+++|||+.++...       |  ..+.+++.. +. ...+.... ....-.|+|++.   .+  +++.      
T Consensus       351 ~vss-paiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~-~~~lt~g~-~~t~PsWspDG~---~l--w~v~dg~~~~  421 (591)
T PRK13616        351 NITS-AALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GV-AVQVLEGH-SLTRPSWSLDAD---AV--WVVVDGNTVV  421 (591)
T ss_pred             Cccc-ceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Cc-ceeeecCC-CCCCceECCCCC---ce--EEEecCcceE
Confidence            4555 89999998876443       2  355555542 22 23332222 356778999964   11  1111      


Q ss_pred             ----eecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           73 ----ASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        73 ----~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                          ....+.+.+.++..++...  .....+..+.|+|||..+
T Consensus       422 ~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~Ri  462 (591)
T PRK13616        422 RVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRA  462 (591)
T ss_pred             EEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEE
Confidence                1123445544555444322  233479999999999865

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.37  E-value=0.0037  Score=42.84  Aligned_cols=85  Identities=11%  Similarity=0.084  Sum_probs=58.0

Q ss_pred             CEEEEEcCCeEEEEeCCCCc-eeee--cc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEe
Q 033738           20 KRLLVCTSNTVSIFSTSTGL-QISS--LE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID   94 (112)
Q Consensus        20 ~~l~~~~~~~v~~~~~~~~~-~~~~--~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~   94 (112)
                      +.++.-+++.+..||.+-.. .+..  ..  .......|++-+.+|        +++.|+.+|.||+||-...+.-..++
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G--------~iavgs~~G~IRLyd~~g~~AKT~lp  615 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG--------YIAVGSNKGDIRLYDRLGKRAKTALP  615 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc--------eEEEEeCCCcEEeecccchhhhhcCC
Confidence            44555567889999987532 2211  11  123456788877777        78899999999999954333334444


Q ss_pred             c-CCCEEEEEEcCCCcEeC
Q 033738           95 V-KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        95 ~-~~~v~~~~~~~~~~~~~  112 (112)
                      . +.+|..+..+.||++++
T Consensus       616 ~lG~pI~~iDvt~DGkwil  634 (794)
T PF08553_consen  616 GLGDPIIGIDVTADGKWIL  634 (794)
T ss_pred             CCCCCeeEEEecCCCcEEE
Confidence            3 44999999999999873

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.34  E-value=0.0096  Score=35.80  Aligned_cols=67  Identities=21%  Similarity=0.151  Sum_probs=47.4

Q ss_pred             eEEcCCCCEEEEEcCCeEEEEeCCCC--ceeeeccc---cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738           13 PAFSNDVKRLLVCTSNTVSIFSTSTG--LQISSLEG---HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus        13 ~~~~~~~~~l~~~~~~~v~~~~~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      ++.+.||+.|+...|..|.+-..+..  ..+.....   ..-.-+.++||||+.       +++.+...|.|+++|+..
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-------lLa~a~S~G~i~vfdl~g   74 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-------LLAYAESTGTIRVFDLMG   74 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-------EEEEEcCCCeEEEEeccc
Confidence            56788999999888888877765432  12222221   122346899999994       778899999999999873

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.32  E-value=0.0092  Score=36.26  Aligned_cols=94  Identities=16%  Similarity=0.266  Sum_probs=62.2

Q ss_pred             EEcCCCCEEEEEc-C-----CeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeee---c--------
Q 033738           14 AFSNDVKRLLVCT-S-----NTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS---L--------   75 (112)
Q Consensus        14 ~~~~~~~~l~~~~-~-----~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~--------   75 (112)
                      .|||||.+|+..- |     |.|-+||.+.+ +.+..+..|.-.-..+.|.+|++    .+ .++.++   .        
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGr----tl-vvanGGIethpdfgR~~l  194 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGR----TL-VVANGGIETHPDFGRTEL  194 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCc----EE-EEeCCceecccccCcccc
Confidence            6899999998764 3     78999998753 45677777776677889999996    11 122221   1        


Q ss_pred             -----CCcEEEEeCCCCceEEEEecC----C-CEEEEEEcCCCcEeC
Q 033738           76 -----DETIKYWDFSTPELLKTIDVK----F-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        76 -----d~~i~~~~~~~~~~~~~~~~~----~-~v~~~~~~~~~~~~~  112 (112)
                           ...+.+.|..+|+.+.+...+    . .+.-++..+||..+|
T Consensus       195 NldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf  241 (366)
T COG3490         195 NLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF  241 (366)
T ss_pred             chhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEE
Confidence                 124555666667666554433    2 677788888887653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.27  E-value=0.00068  Score=46.45  Aligned_cols=94  Identities=16%  Similarity=0.140  Sum_probs=64.0

Q ss_pred             cCCCeEEcCCCCEEEEEc-----CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            9 VSSPPAFSNDVKRLLVCT-----SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      +..-.+|+|...+++.++     .|+|-+|- ++|++-+... ..-.+.+++|+|..-       .++.+-.-|.+.+|.
T Consensus        17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~-------vLa~gwe~g~~~v~~   87 (1416)
T KOG3617|consen   17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEF-------VLAQGWEMGVSDVQK   87 (1416)
T ss_pred             cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHH-------HHhhccccceeEEEe
Confidence            333367999999888775     37888873 5565433222 112245789999872       556777789999998


Q ss_pred             CCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           84 FSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        84 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ..+.+--.....|. ++..+.|+++|..+
T Consensus        88 ~~~~e~htv~~th~a~i~~l~wS~~G~~l  116 (1416)
T KOG3617|consen   88 TNTTETHTVVETHPAPIQGLDWSHDGTVL  116 (1416)
T ss_pred             cCCceeeeeccCCCCCceeEEecCCCCeE
Confidence            77655444444444 99999999999865

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.26  E-value=0.00053  Score=46.97  Aligned_cols=68  Identities=16%  Similarity=0.225  Sum_probs=51.5

Q ss_pred             cCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec---------CCcEEEEeCC
Q 033738           16 SNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL---------DETIKYWDFS   85 (112)
Q Consensus        16 ~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------d~~i~~~~~~   85 (112)
                      ..+++.+.+|. .|+|.+-|.++.+.++.+..|.+.+..+..  .|+       .++++|.         |..+++||++
T Consensus       184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GN-------lLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGN-------LLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCC-------eEEEeecccccccccccchhhhhhhh
Confidence            34567777787 799999999999999999999998877665  453       4557664         5678999988


Q ss_pred             CCceEEE
Q 033738           86 TPELLKT   92 (112)
Q Consensus        86 ~~~~~~~   92 (112)
                      ..+.+..
T Consensus       255 mmral~P  261 (1118)
T KOG1275|consen  255 MMRALSP  261 (1118)
T ss_pred             hhhccCC
Confidence            6554433

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.25  E-value=0.0024  Score=41.18  Aligned_cols=93  Identities=13%  Similarity=0.084  Sum_probs=65.4

Q ss_pred             CCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC----------
Q 033738            7 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD----------   76 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d----------   76 (112)
                      ..+.. .++||.|.+|++..-..|.+|+-.....+..+.  ...|..+.|+|.+.       |+.+-...          
T Consensus        33 ~p~~~-~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~k-------YL~tw~~~pi~~pe~e~s  102 (561)
T COG5354          33 WPVAY-VSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEK-------YLVTWSREPIIEPEIEIS  102 (561)
T ss_pred             cchhh-eeecCcchheehhhccceEEccccchhheeeee--cCCceecccCcccc-------eeeeeccCCccChhhccC
Confidence            34555 889999999988877778999877665444443  24578899999985       66665443          


Q ss_pred             -----CcEEEEeCCCCceEEEEecCC-C--EE-EEEEcCCCc
Q 033738           77 -----ETIKYWDFSTPELLKTIDVKF-P--IF-SMVRGKKGF  109 (112)
Q Consensus        77 -----~~i~~~~~~~~~~~~~~~~~~-~--v~-~~~~~~~~~  109 (112)
                           ..+.+||+.+|..+..+.... +  .+ -+.|+-+.+
T Consensus       103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~  144 (561)
T COG5354         103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK  144 (561)
T ss_pred             CccccCceeEEeccCceeEeeccccCCcccccceeeeeecch
Confidence                 248999999999888877644 2  33 355554443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.24  E-value=0.0014  Score=28.69  Aligned_cols=29  Identities=17%  Similarity=0.244  Sum_probs=25.5

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS   36 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~   36 (112)
                      ..|.. ++|+|...+++.++ +|.|.++.++
T Consensus        12 ~~v~~-~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSC-MSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEE-EEECCCCCEEEEEECCCeEEEEECC
Confidence            45776 99999999999998 8999999983

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.20  E-value=0.013  Score=39.20  Aligned_cols=92  Identities=12%  Similarity=-0.004  Sum_probs=58.9

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee----------------
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS----------------   74 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------------   74 (112)
                      +-++|||+.+...+  .+.+.++|.++.+...++.... ....++++|++.       ++.+.+                
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk-------~afvTsyNsE~G~tl~em~a~e  269 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGK-------YAFSTCYNSEEGVTLAEMMAAE  269 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCC-------EEEEeccCcccCcceeeecccc
Confidence            34567887765445  4788888988776555554322 224556666663       221221                


Q ss_pred             ------------------------cCCcEEEEeCCC-----CceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           75 ------------------------LDETIKYWDFST-----PELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        75 ------------------------~d~~i~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                                              .++.+.+.|.++     ...+..+..+.....+.++|||+++|
T Consensus       270 ~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkyly  336 (635)
T PRK02888        270 RDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFI  336 (635)
T ss_pred             CceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEE
Confidence                                    124577888776     35566677777888899999999875

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.17  E-value=0.00039  Score=43.11  Aligned_cols=42  Identities=17%  Similarity=0.400  Sum_probs=32.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE   45 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~   45 (112)
                      .-||+..|.. ++.-++. .|++++ |+++++||+.+++.+..+.
T Consensus       190 clGH~eFVS~-isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  190 CLGHKEFVST-ISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             ccccHhheee-eeeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence            3589999997 8887654 466776 9999999999998765553

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.17  E-value=0.0058  Score=37.87  Aligned_cols=73  Identities=15%  Similarity=0.201  Sum_probs=52.3

Q ss_pred             CCcCCCeEEcCCCCEEEEEcCCeEEEEeCCC-CceeeeccccC------------Cc---eEEEEEecCCCCccceeEEE
Q 033738            7 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTST-GLQISSLEGHT------------AP---VTTVIVVPASTPATKILSYC   70 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~-~~~~~~~~~~~------------~~---v~~~~~~~~~~~~~~~~~~~   70 (112)
                      ..|.+ +.|+++|+++++-+--+|++||+.. .+++..++.|.            ..   -.-++|+-++.       ++
T Consensus       273 sSISD-vKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-------~v  344 (433)
T KOG1354|consen  273 SSISD-VKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-------YV  344 (433)
T ss_pred             hhhhc-eEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc-------eE
Confidence            45677 9999999999988889999999854 33333333221            11   24567887773       77


Q ss_pred             EeeecCCcEEEEeCCCC
Q 033738           71 WTASLDETIKYWDFSTP   87 (112)
Q Consensus        71 ~~~~~d~~i~~~~~~~~   87 (112)
                      .+|+....+++++...|
T Consensus       345 ~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  345 MTGSYNNVFRVFNLARG  361 (433)
T ss_pred             ecccccceEEEecCCCC
Confidence            89999999999996544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.08  E-value=0.00048  Score=40.87  Aligned_cols=87  Identities=11%  Similarity=0.106  Sum_probs=49.2

Q ss_pred             EcCCCCEEEEEcC------CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc
Q 033738           15 FSNDVKRLLVCTS------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE   88 (112)
Q Consensus        15 ~~~~~~~l~~~~~------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~   88 (112)
                      ....++.+.++.-      +..+.|+++..+...........|.+++-+|...   +   ++.+|+.||.+-+||.+...
T Consensus       140 ~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq---~---~v~cgt~dg~~~l~d~rn~~  213 (319)
T KOG4714|consen  140 ICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQ---H---LVCCGTDDGIVGLWDARNVA  213 (319)
T ss_pred             eeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccc---c---EEEEecCCCeEEEEEccccc
Confidence            3344555555542      3445555543322211112233488888888764   2   44588899999999998753


Q ss_pred             eE-EEEecCC-CEEEEEEcCC
Q 033738           89 LL-KTIDVKF-PIFSMVRGKK  107 (112)
Q Consensus        89 ~~-~~~~~~~-~v~~~~~~~~  107 (112)
                      .. ..+..|. +++.+.|+|.
T Consensus       214 ~p~S~l~ahk~~i~eV~FHpk  234 (319)
T KOG4714|consen  214 MPVSLLKAHKAEIWEVHFHPK  234 (319)
T ss_pred             chHHHHHHhhhhhhheeccCC
Confidence            22 2233333 6777777763

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.06  E-value=0.00085  Score=45.23  Aligned_cols=91  Identities=24%  Similarity=0.363  Sum_probs=62.1

Q ss_pred             eEEcCC-CCEEEEEcCCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC--c
Q 033738           13 PAFSND-VKRLLVCTSNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP--E   88 (112)
Q Consensus        13 ~~~~~~-~~~l~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--~   88 (112)
                      ++|+.. ++.+++.....+++||++.+ .++..+++|...+..++|.....      +.+.+++.|++++.||..+.  +
T Consensus       164 Vkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~------s~~~s~~~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  164 VKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY------SEIMSSSNDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             eeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh------hhhcccCCCCceeeecccccccc
Confidence            777764 44444444788999999875 45567778888888888865543      24568999999999998754  2


Q ss_pred             eEEEEecCCCEEEEEEcCCCc
Q 033738           89 LLKTIDVKFPIFSMVRGKKGF  109 (112)
Q Consensus        89 ~~~~~~~~~~v~~~~~~~~~~  109 (112)
                      ...+.....+++-.++.|-|+
T Consensus       238 ~~~~vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  238 SKRTVTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             cceeccccCcceeccccccCc
Confidence            333334444676667776554

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.0018  Score=40.65  Aligned_cols=74  Identities=18%  Similarity=0.106  Sum_probs=56.3

Q ss_pred             EEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCc
Q 033738           30 VSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGF  109 (112)
Q Consensus        30 v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  109 (112)
                      +++.+..+.+....+..+...|..++++|..+      -++..++.+..|++.|+++..++..+..+..+++.+|.-+..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~------GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~  248 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNE------GLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDER  248 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCcccc------ceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCc
Confidence            44545444444445556677788999999874      245678889999999999998888888888999999987653

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.04  E-value=0.017  Score=34.79  Aligned_cols=72  Identities=13%  Similarity=-0.054  Sum_probs=49.6

Q ss_pred             CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738           19 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        19 ~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~   97 (112)
                      |++++.|. .+.+++.+.++|....++..-+.--......+++.       .+..++.|+..+..|.++..++...+-+.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~g-------lIycgshd~~~yalD~~~~~cVykskcgG  135 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGG-------LIYCGSHDGNFYALDPKTYGCVYKSKCGG  135 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCc-------eEEEecCCCcEEEecccccceEEecccCC
Confidence            45566666 78888888888876666654322112334456664       66789999999999999888877665443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.01  E-value=0.0043  Score=43.50  Aligned_cols=50  Identities=30%  Similarity=0.391  Sum_probs=41.3

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEE
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIV   56 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~   56 (112)
                      +++|.+ ++|+.+|..++.|- +|.|.+||...++.++.+..++.+...+-+
T Consensus       130 ~~~Vts-vafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~  180 (1206)
T KOG2079|consen  130 QGPVTS-VAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF  180 (1206)
T ss_pred             CCccee-eEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence            457776 99999999999886 899999999998888888877776665533

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.04  Score=34.94  Aligned_cols=93  Identities=25%  Similarity=0.253  Sum_probs=64.1

Q ss_pred             eEEcCCCCEEEEEc----CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc
Q 033738           13 PAFSNDVKRLLVCT----SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE   88 (112)
Q Consensus        13 ~~~~~~~~~l~~~~----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~   88 (112)
                      ++++|+++.++.+.    ++.+.+.|..+.+.+........+ ..++++|++.      ..+++...++.+.+.|.....
T Consensus       121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~------~vyv~~~~~~~v~vi~~~~~~  193 (381)
T COG3391         121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGN------KVYVTNSDDNTVSVIDTSGNS  193 (381)
T ss_pred             EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCC------eEEEEecCCCeEEEEeCCCcc
Confidence            88999998877664    378889898888776665444444 7889999995      234455678899999976554


Q ss_pred             eEE-----EEecCCCEEEEEEcCCCcEeC
Q 033738           89 LLK-----TIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        89 ~~~-----~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      ...     .......-..+.+.|+|+.+|
T Consensus       194 v~~~~~~~~~~~~~~P~~i~v~~~g~~~y  222 (381)
T COG3391         194 VVRGSVGSLVGVGTGPAGIAVDPDGNRVY  222 (381)
T ss_pred             eeccccccccccCCCCceEEECCCCCEEE
Confidence            442     122223445678888888654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.013  Score=39.92  Aligned_cols=74  Identities=19%  Similarity=0.162  Sum_probs=56.3

Q ss_pred             CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738           19 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        19 ~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~   97 (112)
                      ++.++.|+ +|.+++.+.+ +.. .....|...      ..+|.       ++++|+.||.+.+-.+-+.+...+...+.
T Consensus        49 ~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Ge-------y~asCS~DGkv~I~sl~~~~~~~~~df~r  113 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGE-------YVASCSDDGKVVIGSLFTDDEITQYDFKR  113 (846)
T ss_pred             cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCc-------eEEEecCCCcEEEeeccCCccceeEecCC
Confidence            57788888 8999998876 333 222223221      44564       88999999999999988888888888888


Q ss_pred             CEEEEEEcCC
Q 033738           98 PIFSMVRGKK  107 (112)
Q Consensus        98 ~v~~~~~~~~  107 (112)
                      ++.+++++|+
T Consensus       114 piksial~Pd  123 (846)
T KOG2066|consen  114 PIKSIALHPD  123 (846)
T ss_pred             cceeEEeccc
Confidence            9999999998

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.017  Score=39.43  Aligned_cols=83  Identities=14%  Similarity=0.182  Sum_probs=52.8

Q ss_pred             CCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCC-CCccceeEEEEeeecCCcEEEEeCC---CCceEEE
Q 033738           18 DVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS-TPATKILSYCWTASLDETIKYWDFS---TPELLKT   92 (112)
Q Consensus        18 ~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~~~~---~~~~~~~   92 (112)
                      +|.++++++ ||++.+..+-+.+...++. ...++..++++|+- .++++   .+++||..| +.++.-.   ....+..
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk---~fv~GG~ag-lvL~er~wlgnk~~v~l  156 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSK---QFVSGGMAG-LVLSERNWLGNKDSVVL  156 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhh---heeecCcce-EEEehhhhhcCccceee
Confidence            589999999 8999998887776555554 34677899999982 11111   345888877 7666432   1122212


Q ss_pred             EecCCCEEEEEEc
Q 033738           93 IDVKFPIFSMVRG  105 (112)
Q Consensus        93 ~~~~~~v~~~~~~  105 (112)
                      .....+|.++.|.
T Consensus       157 ~~~eG~I~~i~W~  169 (846)
T KOG2066|consen  157 SEGEGPIHSIKWR  169 (846)
T ss_pred             ecCccceEEEEec
Confidence            2233477777775

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.0044  Score=40.99  Aligned_cols=54  Identities=17%  Similarity=0.129  Sum_probs=39.6

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeec-cccCCceEEEEEec
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL-EGHTAPVTTVIVVP   58 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~   58 (112)
                      |...+..+++|.|||+.++.|- ||+|++.|..++..+..+ ......+.++-|++
T Consensus        60 p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   60 PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            4445553399999999999997 999999999988766552 22345566666653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.80  E-value=0.033  Score=39.34  Aligned_cols=88  Identities=11%  Similarity=0.106  Sum_probs=54.9

Q ss_pred             CeEEcCCCCEEEEEc---C-CeEEEEeCCCCceeeec----cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738           12 PPAFSNDVKRLLVCT---S-NTVSIFSTSTGLQISSL----EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus        12 ~~~~~~~~~~l~~~~---~-~~v~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      +++|.|.|+++++..   + ..|.+|.-+ |-.-..|    ......|..++|++++.       +++....| .|.+|-
T Consensus       261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~-------iLAv~~~~-~vqLWt  331 (928)
T PF04762_consen  261 ALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSE-------ILAVWLED-RVQLWT  331 (928)
T ss_pred             CccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCC-------EEEEEecC-CceEEE
Confidence            489999999999875   2 566666633 4222222    23456789999999985       44444444 499998


Q ss_pred             CCCCceE--EEEec--CCCEEEEEEcCCC
Q 033738           84 FSTPELL--KTIDV--KFPIFSMVRGKKG  108 (112)
Q Consensus        84 ~~~~~~~--~~~~~--~~~v~~~~~~~~~  108 (112)
                      ..+...-  +.+..  ...+..+.|+|..
T Consensus       332 ~~NYHWYLKqei~~~~~~~~~~~~Wdpe~  360 (928)
T PF04762_consen  332 RSNYHWYLKQEIRFSSSESVNFVKWDPEK  360 (928)
T ss_pred             eeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence            7765432  22222  2244457788754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.78  E-value=0.041  Score=34.59  Aligned_cols=70  Identities=11%  Similarity=0.157  Sum_probs=39.7

Q ss_pred             CCEEEEEc-CCeEEEEeCCCCceeeeccccCC-ceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC
Q 033738           19 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTA-PVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK   96 (112)
Q Consensus        19 ~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~   96 (112)
                      +..++.++ ++.+..+|..+++.+........ .......  .+.       .++.++.+|.++++|..+|+.+..++.+
T Consensus       279 ~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~-------~l~~~~~~G~l~~~d~~tG~~~~~~~~~  349 (377)
T TIGR03300       279 DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGG-------YLVVGDFEGYLHWLSREDGSFVARLKTD  349 (377)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECC-------EEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence            34444444 56666666666654433321111 1111111  121       4557788999999999999988777654


Q ss_pred             C
Q 033738           97 F   97 (112)
Q Consensus        97 ~   97 (112)
                      .
T Consensus       350 ~  350 (377)
T TIGR03300       350 G  350 (377)
T ss_pred             C
Confidence            3

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.73  E-value=0.072  Score=34.59  Aligned_cols=36  Identities=25%  Similarity=0.455  Sum_probs=24.8

Q ss_pred             cCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           75 LDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        75 ~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      .++.+.+||..+++.+..+... +|..+.|+++|+++
T Consensus       124 ~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~v  159 (443)
T PF04053_consen  124 SSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELV  159 (443)
T ss_dssp             ETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEE
T ss_pred             CCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEE
Confidence            3457999999999998888754 48999999999875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.68  E-value=0.053  Score=34.41  Aligned_cols=91  Identities=16%  Similarity=0.161  Sum_probs=44.6

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccC-CceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHT-APVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      |..+... -+|.+||+.|+.++  +  ..+...|+.+++ +.+++... .......++|+.+   .++    -.-....+
T Consensus        34 h~~YF~~-~~ft~dG~kllF~s~~dg~~nly~lDL~t~~-i~QLTdg~g~~~~g~~~s~~~~---~~~----Yv~~~~~l  104 (386)
T PF14583_consen   34 HRLYFYQ-NCFTDDGRKLLFASDFDGNRNLYLLDLATGE-ITQLTDGPGDNTFGGFLSPDDR---ALY----YVKNGRSL  104 (386)
T ss_dssp             E---TTS---B-TTS-EEEEEE-TTSS-EEEEEETTT-E-EEE---SS-B-TTT-EE-TTSS---EEE----EEETTTEE
T ss_pred             cceeecC-CCcCCCCCEEEEEeccCCCcceEEEEcccCE-EEECccCCCCCccceEEecCCC---eEE----EEECCCeE
Confidence            4456666 78999998777665  3  578888999886 55555432 2222455677774   222    23344678


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEE
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVR  104 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~  104 (112)
                      +-.|+++++.......+. .+....|
T Consensus       105 ~~vdL~T~e~~~vy~~p~~~~g~gt~  130 (386)
T PF14583_consen  105 RRVDLDTLEERVVYEVPDDWKGYGTW  130 (386)
T ss_dssp             EEEETTT--EEEEEE--TTEEEEEEE
T ss_pred             EEEECCcCcEEEEEECCcccccccce
Confidence            888999887655555544 4433444

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.67  E-value=0.0025  Score=39.01  Aligned_cols=101  Identities=19%  Similarity=0.173  Sum_probs=68.2

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCc---eeeeccccC-----CceEEEEEecCCCCccceeEEEEeeec
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL---QISSLEGHT-----APVTTVIVVPASTPATKILSYCWTASL   75 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~---~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~   75 (112)
                      .|.-.+.. +.+..|.+.++++.|-.|.+|++....   .+.-++++.     .-+++..|+|...      ..+.-.+.
T Consensus       170 aH~yhiNS-iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c------n~fmYSsS  242 (460)
T COG5170         170 AHPYHINS-ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC------NVFMYSSS  242 (460)
T ss_pred             cceeEeee-eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc------ceEEEecC
Confidence            46667776 999999999999999999999986431   233333332     2356778888764      24556777


Q ss_pred             CCcEEEEeCCCCc-e-----EE--EEec---------CCCEEEEEEcCCCcEe
Q 033738           76 DETIKYWDFSTPE-L-----LK--TIDV---------KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        76 d~~i~~~~~~~~~-~-----~~--~~~~---------~~~v~~~~~~~~~~~~  111 (112)
                      .|.|++-|++... |     +.  ++.+         -+.+..+.|+++|++|
T Consensus       243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryI  295 (460)
T COG5170         243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYI  295 (460)
T ss_pred             CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEE
Confidence            8999999988421 1     11  1110         1257888999999876

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.0092  Score=41.98  Aligned_cols=71  Identities=18%  Similarity=0.227  Sum_probs=49.8

Q ss_pred             CEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738           20 KRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        20 ~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~   97 (112)
                      ..++.++ .|.+-..|.... .+...=..-+++|++++++.++.       .+..|-.+|.|.+||...++.++.+..+.
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-------~l~~G~~~G~V~v~D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-------LLLAGLGDGHVTVWDMHRAKILKVITEHG  172 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-------eeccccCCCcEEEEEccCCcceeeeeecC
Confidence            3455665 477777776532 11122223467899999999994       66688889999999999988887776544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=96.52  E-value=0.016  Score=43.24  Aligned_cols=72  Identities=15%  Similarity=0.120  Sum_probs=55.1

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc-cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG-HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      -..|.+ +.-+|...+.++|+ ||.+++|....++.+..++. ....|+.+.|+..|.       -+..+..||.+.+|.
T Consensus      2208 v~~v~r-~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-------k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2208 VENVRR-MTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-------KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             cCceee-ecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-------ceeeeccCCceeecc
Confidence            344554 55567778888998 99999999888777766652 347788999998884       455778899999998


Q ss_pred             CC
Q 033738           84 FS   85 (112)
Q Consensus        84 ~~   85 (112)
                      ..
T Consensus      2280 ~~ 2281 (2439)
T KOG1064|consen 2280 AS 2281 (2439)
T ss_pred             cC
Confidence            76

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.50  E-value=0.087  Score=35.48  Aligned_cols=91  Identities=10%  Similarity=0.101  Sum_probs=50.2

Q ss_pred             cCCCeEEcCCCCEEEEEcCC-------------eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec
Q 033738            9 VSSPPAFSNDVKRLLVCTSN-------------TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL   75 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~~~-------------~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   75 (112)
                      ... ..|+|||+.+.+..++             .+.+.+++.+.. ..  ...+.|..++||||+.   +++ +++    
T Consensus       399 ~t~-PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-~~--~~~g~Issl~wSpDG~---RiA-~i~----  466 (591)
T PRK13616        399 LTR-PSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-AS--RVPGPISELQLSRDGV---RAA-MII----  466 (591)
T ss_pred             CCC-ceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchh-hh--ccCCCcCeEEECCCCC---EEE-EEE----
Confidence            455 8999999877766532             233233332221 11  2245689999999994   343 322    


Q ss_pred             CCcEEE---EeCCCCce-E---EEEecC-C-CEEEEEEcCCCcEe
Q 033738           76 DETIKY---WDFSTPEL-L---KTIDVK-F-PIFSMVRGKKGFAV  111 (112)
Q Consensus        76 d~~i~~---~~~~~~~~-~---~~~~~~-~-~v~~~~~~~~~~~~  111 (112)
                      ++.+++   -....|.. +   ..+... . .+.++.|.+++..+
T Consensus       467 ~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~  511 (591)
T PRK13616        467 GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV  511 (591)
T ss_pred             CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE
Confidence            357776   34344531 1   112111 1 35778898887643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.50  E-value=0.03  Score=39.98  Aligned_cols=94  Identities=11%  Similarity=0.121  Sum_probs=57.1

Q ss_pred             eEEcCCCCEEEEEc-----C-CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738           13 PAFSNDVKRLLVCT-----S-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-----~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      +.|--||+++++..     + ..+++||-+ |..-..-....+.-.+++|-|.|.   ++. .+-.-++|..|.++....
T Consensus       201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs---~iA-~iq~~~sd~~IvffErNG  275 (1265)
T KOG1920|consen  201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS---LIA-AIQCKTSDSDIVFFERNG  275 (1265)
T ss_pred             EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC---eEe-eeeecCCCCcEEEEecCC
Confidence            88999999998742     4 789999976 432111122333346889999883   222 222334566788886431


Q ss_pred             ---CceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           87 ---PELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        87 ---~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                         |+-...++... .+..++|+.++..+
T Consensus       276 L~hg~f~l~~p~de~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  276 LRHGEFVLPFPLDEKEVEELAWNSNSDIL  304 (1265)
T ss_pred             ccccccccCCcccccchheeeecCCCCce
Confidence               22222222233 48899999888765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.48  E-value=0.041  Score=35.65  Aligned_cols=79  Identities=16%  Similarity=0.111  Sum_probs=45.5

Q ss_pred             CCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC-----------
Q 033738           19 VKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP-----------   87 (112)
Q Consensus        19 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-----------   87 (112)
                      |..|+..+++.|.+||.++++.++.+...  +|..+.|++++.       +++-.+ +..+.+++....           
T Consensus       117 G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~-------~val~t-~~~i~il~~~~~~~~~~~~~g~e  186 (443)
T PF04053_consen  117 GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGE-------LVALVT-KDSIYILKYNLEAVAAIPEEGVE  186 (443)
T ss_dssp             SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSS-------EEEEE--S-SEEEEEE-HHHHHHBTTTB-G
T ss_pred             CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCC-------EEEEEe-CCeEEEEEecchhcccccccCch
Confidence            77777777779999999999888888743  378999999985       444444 447777765422           


Q ss_pred             ceEEEEec-CCCEEEEEEcCC
Q 033738           88 ELLKTIDV-KFPIFSMVRGKK  107 (112)
Q Consensus        88 ~~~~~~~~-~~~v~~~~~~~~  107 (112)
                      ........ ...|.+..|..+
T Consensus       187 ~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  187 DAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             GGEEEEEEE-S--SEEEEETT
T ss_pred             hceEEEEEecceeEEEEEEcC
Confidence            13334433 446777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.43  E-value=0.084  Score=31.47  Aligned_cols=86  Identities=19%  Similarity=0.166  Sum_probs=57.7

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEe--CCCCce-----eeecc---ccCCce-EEEEEecCCCCccceeEEEEeeecCCcE
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFS--TSTGLQ-----ISSLE---GHTAPV-TTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~--~~~~~~-----~~~~~---~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      ++|+.+.+.++...  +-+|.-||  .++|..     +..++   ..+... -.++...++.       +++++-+.+++
T Consensus       163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-------L~Va~~ng~~V  235 (310)
T KOG4499|consen  163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-------LYVATFNGGTV  235 (310)
T ss_pred             ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-------EEEEEecCcEE
Confidence            88888888777664  67887777  555532     11111   111111 2334444563       56677778899


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEc
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRG  105 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~  105 (112)
                      ...|..+|+.+..+..+. .+++++|-
T Consensus       236 ~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  236 QKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             EEECCCCCcEEEEEEcCCCceEEEEec
Confidence            999999999999998877 88888885

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.43  E-value=0.011  Score=40.19  Aligned_cols=59  Identities=12%  Similarity=0.169  Sum_probs=45.0

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeee-cc-ccCCceEEEEEecCCC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS-LE-GHTAPVTTVIVVPAST   61 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~-~~-~~~~~v~~~~~~~~~~   61 (112)
                      |.||.+.|.- +.|+.+.+.|.+.. +|-|.+|-+-.+.-... +. .+.+-|.++.|..+|.
T Consensus        67 LeGH~~sV~v-vTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~  128 (1189)
T KOG2041|consen   67 LEGHNASVMV-VTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT  128 (1189)
T ss_pred             hccCcceEEE-EEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc
Confidence            6899999998 99999889998887 89999998876643321 11 2345578999999983

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=96.42  E-value=0.017  Score=40.16  Aligned_cols=100  Identities=17%  Similarity=0.180  Sum_probs=64.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-C---------CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-S---------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW   71 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~---------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   71 (112)
                      +..|++.+.   +|+-.|+.|++++ .         ..|++||++..+.+.-+.-+.++ ..+.|.|.-.      +.++
T Consensus       213 ~~aHs~siS---DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~------t~~~  282 (1118)
T KOG1275|consen  213 FDAHSGSIS---DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT------TRLA  282 (1118)
T ss_pred             eecccccee---eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc------ceEE
Confidence            456777775   4666789998876 2         35899999987766655555454 5678888764      3455


Q ss_pred             eeecCCcEEEEeCCC-Cce---EEEEec-CCCEEEEEEcCCCcEe
Q 033738           72 TASLDETIKYWDFST-PEL---LKTIDV-KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        72 ~~~~d~~i~~~~~~~-~~~---~~~~~~-~~~v~~~~~~~~~~~~  111 (112)
                      .++..|...+-|..+ +++   +..+.. .+.+..+.++++|+.+
T Consensus       283 V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~al  327 (1118)
T KOG1275|consen  283 VTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDAL  327 (1118)
T ss_pred             EEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceE
Confidence            777778888888322 122   222222 2247777888877654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.38  E-value=0.057  Score=33.69  Aligned_cols=79  Identities=18%  Similarity=0.249  Sum_probs=51.0

Q ss_pred             eEEcCCCCEEEEEc----C-------CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738           13 PAFSNDVKRLLVCT----S-------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus        13 ~~~~~~~~~l~~~~----~-------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      +++++..++|+.--    +       ..|.++|+.+++.+..+... .++.+++.+.+..  ..|   ++....++.+.+
T Consensus       243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~--P~L---~~~~~~~~~l~v  316 (342)
T PF06433_consen  243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDK--PLL---YALSAGDGTLDV  316 (342)
T ss_dssp             EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS---EE---EEEETTTTEEEE
T ss_pred             eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCC--cEE---EEEcCCCCeEEE
Confidence            56666555554321    1       36889999999988888742 4577899998874  222   223346789999


Q ss_pred             EeCCCCceEEEEecCC
Q 033738           82 WDFSTPELLKTIDVKF   97 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~   97 (112)
                      ||..+|+.+..+..-.
T Consensus       317 ~D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  317 YDAATGKLVRSIEQLG  332 (342)
T ss_dssp             EETTT--EEEEE---S
T ss_pred             EeCcCCcEEeehhccC
Confidence            9999999988887543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.32  E-value=0.032  Score=34.92  Aligned_cols=32  Identities=19%  Similarity=0.231  Sum_probs=25.7

Q ss_pred             CCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCc
Q 033738            7 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL   39 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~   39 (112)
                      ..+.. ..|||+|+.++...++.|.+++..++.
T Consensus        43 ~~~~~-~~~sP~g~~~~~v~~~nly~~~~~~~~   74 (353)
T PF00930_consen   43 PKLQD-AKWSPDGKYIAFVRDNNLYLRDLATGQ   74 (353)
T ss_dssp             TTBSE-EEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred             ccccc-ceeecCCCeeEEEecCceEEEECCCCC
Confidence            34555 899999999999999999999987663

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.29  E-value=0.14  Score=32.56  Aligned_cols=93  Identities=23%  Similarity=0.188  Sum_probs=65.6

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee--cCCcEEEEeCCCCc
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS--LDETIKYWDFSTPE   88 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~   88 (112)
                      +..++++..++...  ++.+.+.|..+........... ....+++++++.      ..+++..  .++.+.+.|..++.
T Consensus        79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~------~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGK------YVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCC------EEEEEecccCCceEEEEeCCCCe
Confidence            67888887665554  6999999977766555444333 446889999985      2333444  47899999999888


Q ss_pred             eEEEEecCCCEEEEEEcCCCcEeC
Q 033738           89 LLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        89 ~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      .+........-..+++.|+|+.+|
T Consensus       152 ~~~~~~vG~~P~~~a~~p~g~~vy  175 (381)
T COG3391         152 VTATIPVGNTPTGVAVDPDGNKVY  175 (381)
T ss_pred             EEEEEecCCCcceEEECCCCCeEE
Confidence            887766554227889999998664

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.22  E-value=0.035  Score=36.89  Aligned_cols=104  Identities=13%  Similarity=0.173  Sum_probs=64.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      ++.|+..|.. +.|-.+-+.+++ .|+-+.+||.--+..+.+..  ...+.+..+..-++-.  +.+  .++.++...++
T Consensus       780 Y~aHkk~i~~-igfL~~lr~i~S-cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~--~~i--liAgcsaeSTV  853 (1034)
T KOG4190|consen  780 YQAHKKPIHD-IGFLADLRSIAS-CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVD--RHI--LIAGCSAESTV  853 (1034)
T ss_pred             hhhccCcccc-eeeeeccceeee-ccCcceeecccccchhHhhhcCcccCCCceeEecccCc--chh--eeeeccchhhh
Confidence            4567888887 877776665533 37889999986665554222  2333444444444421  222  34455778899


Q ss_pred             EEEeCCCCceEEEEec-----CC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDV-----KF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~-----~~-~v~~~~~~~~~~~~  111 (112)
                      +++|.+.++....++.     +. .+++++..+.|+.+
T Consensus       854 Kl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~l  891 (1034)
T KOG4190|consen  854 KLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKL  891 (1034)
T ss_pred             eeeecccccceeeEEeccCCCCchheeEEEeccCcchh
Confidence            9999988765544432     22 57888888888754

>PRK10115 protease 2; Provisional

Probab=96.19  E-value=0.23  Score=34.14  Aligned_cols=66  Identities=12%  Similarity=0.105  Sum_probs=42.1

Q ss_pred             eEEcCCCCEEEEEc--C----CeEEEEeCCCCceee-eccccCCceEEEEEecCCCCccceeEEEEeeec-----CCcEE
Q 033738           13 PAFSNDVKRLLVCT--S----NTVSIFSTSTGLQIS-SLEGHTAPVTTVIVVPASTPATKILSYCWTASL-----DETIK   80 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~----~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----d~~i~   80 (112)
                      +.++|||++|+.+.  +    ..+++.|+.++..+. .+.. .  ...++|.+++.      .++.+...     ...++
T Consensus       132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~~------~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDSW------TFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCCC------EEEEEEecCCCCCCCEEE
Confidence            78999999988764  2    468888998775332 2221 1  14589999885      22333322     24677


Q ss_pred             EEeCCCC
Q 033738           81 YWDFSTP   87 (112)
Q Consensus        81 ~~~~~~~   87 (112)
                      .+++.++
T Consensus       203 ~h~lgt~  209 (686)
T PRK10115        203 RHTIGTP  209 (686)
T ss_pred             EEECCCC
Confidence            7888877

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=96.14  E-value=0.029  Score=23.33  Aligned_cols=30  Identities=37%  Similarity=0.422  Sum_probs=23.0

Q ss_pred             CCCCEEEEEc--CCeEEEEeCCCCceeeeccc
Q 033738           17 NDVKRLLVCT--SNTVSIFSTSTGLQISSLEG   46 (112)
Q Consensus        17 ~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~   46 (112)
                      |+++.|+.+.  ++.|.++|..+++....+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            6788777665  69999999988876666654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.10  E-value=0.15  Score=35.23  Aligned_cols=74  Identities=16%  Similarity=0.266  Sum_probs=47.1

Q ss_pred             cCCCeEEcCCCCEEEEEcCCeEEEEeCCC--C--------cee---eec--------cccCCceEEEEEecCCCCcccee
Q 033738            9 VSSPPAFSNDVKRLLVCTSNTVSIFSTST--G--------LQI---SSL--------EGHTAPVTTVIVVPASTPATKIL   67 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~~~~v~~~~~~~--~--------~~~---~~~--------~~~~~~v~~~~~~~~~~~~~~~~   67 (112)
                      |.. +.++|+|++++..+...|.+..+..  |        +..   +.+        ......|..+.|+|.+.++.+++
T Consensus        87 v~~-i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   87 VHQ-ISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             EEE-EEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            444 7789999999888854444444421  1        110   011        12345678999999864334444


Q ss_pred             EEEEeeecCCcEEEEeCCCC
Q 033738           68 SYCWTASLDETIKYWDFSTP   87 (112)
Q Consensus        68 ~~~~~~~~d~~i~~~~~~~~   87 (112)
                          .-..|+.+|+||+...
T Consensus       166 ----vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  166 ----VLTSDNTLRLYDISDP  181 (717)
T ss_pred             ----EEecCCEEEEEecCCC
Confidence                6678999999998754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=0.083  Score=34.93  Aligned_cols=83  Identities=12%  Similarity=0.082  Sum_probs=50.5

Q ss_pred             EEEEEcCCeEEEEeCCCCc--eeeeccc----cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEe
Q 033738           21 RLLVCTSNTVSIFSTSTGL--QISSLEG----HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID   94 (112)
Q Consensus        21 ~l~~~~~~~v~~~~~~~~~--~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~   94 (112)
                      .|+--++..|.-||.+-..  .+....+    ......|.+-..+|        +++.++.+|.||+||.-..+.-..++
T Consensus       397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG--------~IvvgS~~GdIRLYdri~~~AKTAlP  468 (644)
T KOG2395|consen  397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG--------YIVVGSLKGDIRLYDRIGRRAKTALP  468 (644)
T ss_pred             cEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc--------eEEEeecCCcEEeehhhhhhhhhccc
Confidence            3444457889999986422  1111111    12334566666666        78899999999999973222223333


Q ss_pred             c-CCCEEEEEEcCCCcEe
Q 033738           95 V-KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        95 ~-~~~v~~~~~~~~~~~~  111 (112)
                      . +.+|..+..+-+|++|
T Consensus       469 gLG~~I~hVdvtadGKwi  486 (644)
T KOG2395|consen  469 GLGDAIKHVDVTADGKWI  486 (644)
T ss_pred             ccCCceeeEEeeccCcEE
Confidence            3 3378888878888765

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=95.97  E-value=0.11  Score=36.87  Aligned_cols=67  Identities=9%  Similarity=0.075  Sum_probs=45.2

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEE----eCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIF----STSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      +.|.+ +.+-++...++.+. +|.|.+.    +..... +.....-+..+.+++||||+.       .++..+.++++.+
T Consensus        76 ~~ivs-~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~E-------lla~vT~~~~l~~  146 (928)
T PF04762_consen   76 DKIVS-FQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEE-------LLALVTGEGNLLL  146 (928)
T ss_pred             CcEEE-EEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcC-------EEEEEeCCCEEEE
Confidence            45665 77888887777776 8888888    444332 333333456799999999996       4455555666666


Q ss_pred             E
Q 033738           82 W   82 (112)
Q Consensus        82 ~   82 (112)
                      .
T Consensus       147 m  147 (928)
T PF04762_consen  147 M  147 (928)
T ss_pred             E
Confidence            5

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.019  Score=36.89  Aligned_cols=81  Identities=16%  Similarity=0.121  Sum_probs=59.3

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC-Cc-----e---------eeeccccCCceEEEEEecCCCCccceeE
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST-GL-----Q---------ISSLEGHTAPVTTVIVVPASTPATKILS   68 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~-~~-----~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~   68 (112)
                      |..+|.. +.+.+-+..+.+.. .|.|..|.... .+     .         +..+........++.++|++.       
T Consensus       143 H~sPV~~-i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-------  214 (558)
T KOG0882|consen  143 HFSPVKK-IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-------  214 (558)
T ss_pred             ccCceEE-EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC-------
Confidence            7788887 99999998888887 79999998762 11     0         111112234557899999994       


Q ss_pred             EEEeeecCCcEEEEeCCCCceEEEE
Q 033738           69 YCWTASLDETIKYWDFSTPELLKTI   93 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~~~~   93 (112)
                      .+.+-+.|..|++++.++|+.++.+
T Consensus       215 qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  215 QISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             cccccCcccEEEEEEeccchhhhhh
Confidence            5667789999999999988765544

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.88  E-value=0.062  Score=36.38  Aligned_cols=67  Identities=15%  Similarity=0.143  Sum_probs=49.3

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCcee-----eec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQI-----SSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~-----~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      ..++++..+++.|+ .+.|.++-++.+.+.     ..+ ..|...|++++|++++.       .+.+|...|.+..-.+.
T Consensus        82 ~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-------k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen   82 RSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM-------KLYSGDSQGKVVLTELD  154 (726)
T ss_pred             EEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc-------EEeecCCCceEEEEEec
Confidence            67888888888888 688888877653221     111 13577899999999994       55699999998887665


Q ss_pred             C
Q 033738           86 T   86 (112)
Q Consensus        86 ~   86 (112)
                      .
T Consensus       155 s  155 (726)
T KOG3621|consen  155 S  155 (726)
T ss_pred             h
Confidence            5

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.85  E-value=0.1  Score=30.41  Aligned_cols=68  Identities=19%  Similarity=0.261  Sum_probs=44.0

Q ss_pred             CCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEE
Q 033738           17 NDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTI   93 (112)
Q Consensus        17 ~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~   93 (112)
                      +++..+++++ ++.+..+|..+|+.+..+... ..+.......++        .++....++.++.+|..+|+.+...
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~--------~v~v~~~~~~l~~~d~~tG~~~W~~  102 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPVVDGG--------RVYVGTSDGSLYALDAKTGKVLWSI  102 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEEEETT--------EEEEEETTSEEEEEETTTSCEEEEE
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceeeeccc--------ccccccceeeeEecccCCcceeeee
Confidence            3566666665 899999999999877655542 221111122233        2234457779999999999988774

...

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.79  E-value=0.18  Score=33.88  Aligned_cols=99  Identities=17%  Similarity=0.129  Sum_probs=55.2

Q ss_pred             CCCCcCCCeEEcCCC-----CEEEEEcCCeEEEEeCCC-----Cceeeecccc---CCce--EEEEEecCCCCccceeEE
Q 033738            5 GRSYVSSPPAFSNDV-----KRLLVCTSNTVSIFSTST-----GLQISSLEGH---TAPV--TTVIVVPASTPATKILSY   69 (112)
Q Consensus         5 h~~~v~~~~~~~~~~-----~~l~~~~~~~v~~~~~~~-----~~~~~~~~~~---~~~v--~~~~~~~~~~~~~~~~~~   69 (112)
                      .-+.|.+ +.|.|-+     .+||......|-+|.+..     .+.+.....+   .-++  ..+-|+|...    ++ .
T Consensus        55 qFEhV~G-lsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~----iL-~  128 (671)
T PF15390_consen   55 QFEHVHG-LSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA----IL-T  128 (671)
T ss_pred             ccceeee-eeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc----eE-E
Confidence            3467777 9999864     344444479999998752     2222211111   1112  4678999874    32 1


Q ss_pred             EEeeecCCcEEEEeC--CCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           70 CWTASLDETIKYWDF--STPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        70 ~~~~~~d~~i~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ++++ .|-. -+.++  ++.+....++....+.+.+|.+||+.+
T Consensus       129 VLT~-~dvS-V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen  129 VLTA-RDVS-VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             EEec-Ccee-EeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence            2222 2211 12233  333444455666689999999999875

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=95.70  E-value=0.17  Score=28.51  Aligned_cols=35  Identities=6%  Similarity=0.022  Sum_probs=25.4

Q ss_pred             ceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738           50 PVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus        50 ~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      .+..++|||.|-..+.- ++++..+.++.+.+|...
T Consensus        87 ~vv~~aWSP~Gl~~~~r-ClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGR-CLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCc-eEEEEEcCCCeEEEEecC
Confidence            67899999965322222 367788889999999765

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.62  E-value=0.24  Score=29.73  Aligned_cols=100  Identities=11%  Similarity=0.133  Sum_probs=58.8

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeecccc-CCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGH-TAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +-...+++ ++|.|+.+.|++..  .+.|..++.+ |+.++.+.-. .+..-.+++..++       .++++.-.++.+.
T Consensus        19 g~~~e~SG-LTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~-------~~vl~~Er~~~L~   89 (248)
T PF06977_consen   19 GILDELSG-LTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNG-------RYVLSEERDQRLY   89 (248)
T ss_dssp             T--S-EEE-EEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STT-------EEEEEETTTTEEE
T ss_pred             CccCCccc-cEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCC-------EEEEEEcCCCcEE
Confidence            33345777 99999987666665  5888888865 6667666532 3456788887776       2566666788999


Q ss_pred             EEeCCCC--c----eEEEEe--cC----CCEEEEEEcCCCcEeC
Q 033738           81 YWDFSTP--E----LLKTID--VK----FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~--~----~~~~~~--~~----~~v~~~~~~~~~~~~~  112 (112)
                      ++++...  .    ....+.  ..    ..+..++|.|.++.+|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~  133 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF  133 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE
Confidence            8887321  1    112222  11    2589999999876653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=95.62  E-value=0.3  Score=30.80  Aligned_cols=67  Identities=10%  Similarity=0.047  Sum_probs=42.3

Q ss_pred             CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEe
Q 033738           19 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID   94 (112)
Q Consensus        19 ~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~   94 (112)
                      +..++.++ ++.+..+|..+|+.+-..............  ++.       .++.++.++.++.+|..+|+.+....
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~-------~v~v~~~~g~l~ald~~tG~~~W~~~  132 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGG-------LVFVGTEKGEVIALDAEDGKELWRAK  132 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCC-------EEEEEcCCCEEEEEECCCCcEeeeec
Confidence            45666666 789999999888876554432221112222  232       34466778899999988887765544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=95.57  E-value=0.15  Score=31.99  Aligned_cols=75  Identities=15%  Similarity=0.232  Sum_probs=51.6

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC-CCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS-TGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      ++||.+.+.+ ...-|....+++.+ |.++++|--+ .++.-..+. ....+++++.+.++..       .++.+-.++.
T Consensus        20 ~eG~~d~vn~-~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-------~L~vg~~ngt   91 (404)
T KOG1409|consen   20 IEGSQDDVNA-AILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-------RLYVGQDNGT   91 (404)
T ss_pred             hcCchhhhhh-heeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-------EEEEEEecce
Confidence            5788888887 77778888888998 8999999643 333222221 2345567888877763       5557777788


Q ss_pred             EEEEeC
Q 033738           79 IKYWDF   84 (112)
Q Consensus        79 i~~~~~   84 (112)
                      +.-+.+
T Consensus        92 vtefs~   97 (404)
T KOG1409|consen   92 VTEFAL   97 (404)
T ss_pred             EEEEEh
Confidence            777754

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.54  E-value=0.051  Score=38.22  Aligned_cols=64  Identities=14%  Similarity=0.131  Sum_probs=48.7

Q ss_pred             eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcE
Q 033738           40 QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        40 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~  110 (112)
                      ..+.+..+....+|++|+-+.+       .++.|...|.+++++..+|........|. +++.+.=+.+|..
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~-------hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTN-------HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred             cchhhhccccceeeEEeecCCc-------eEEeeeccceEEEEEccCccccccccccccccccccccCCcce
Confidence            3456666778889999998884       77799999999999999998777766665 6665555555543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.51  E-value=0.3  Score=30.07  Aligned_cols=100  Identities=13%  Similarity=0.186  Sum_probs=59.2

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEcC-C-eEEEEeCCCCceeeeccc-cCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCTS-N-TVSIFSTSTGLQISSLEG-HTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~~-~-~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |-...+.+ +.|+|+.+.|.+..+ . .+...+ ..|+.++.++- .-+..-.+++..++.       +.++--.++.++
T Consensus        83 g~~~nvS~-LTynp~~rtLFav~n~p~~iVElt-~~GdlirtiPL~g~~DpE~Ieyig~n~-------fvi~dER~~~l~  153 (316)
T COG3204          83 GETANVSS-LTYNPDTRTLFAVTNKPAAIVELT-KEGDLIRTIPLTGFSDPETIEYIGGNQ-------FVIVDERDRALY  153 (316)
T ss_pred             cccccccc-eeeCCCcceEEEecCCCceEEEEe-cCCceEEEecccccCChhHeEEecCCE-------EEEEehhcceEE
Confidence            33455776 999999988887774 3 333333 34776766542 122234667766663       556667778888


Q ss_pred             EEeCCCCceEE-----EEec------CCCEEEEEEcCCCcEeC
Q 033738           81 YWDFSTPELLK-----TIDV------KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~~~~~-----~~~~------~~~v~~~~~~~~~~~~~  112 (112)
                      ++.+.....+.     .++.      ......++|.|....+|
T Consensus       154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~  196 (316)
T COG3204         154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF  196 (316)
T ss_pred             EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEE
Confidence            77665432211     1111      11567888888776553

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.51  E-value=0.15  Score=26.63  Aligned_cols=31  Identities=19%  Similarity=0.162  Sum_probs=15.1

Q ss_pred             eeecCCcEEEEeCCCCceEEEEecCCCEEEEEE
Q 033738           72 TASLDETIKYWDFSTPELLKTIDVKFPIFSMVR  104 (112)
Q Consensus        72 ~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~  104 (112)
                      .++.|..||+|+-.  +.+..+.....+.++.-
T Consensus        20 vGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~   50 (111)
T PF14783_consen   20 VGSDDFEIRVFKGD--EIVAEITETDKVTSLCS   50 (111)
T ss_pred             EecCCcEEEEEeCC--cEEEEEecccceEEEEE
Confidence            56666666666532  24444444444444433

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.48  E-value=0.072  Score=22.80  Aligned_cols=29  Identities=24%  Similarity=0.205  Sum_probs=23.0

Q ss_pred             CcCCCeEEcCCC---CEEEEEc-CCeEEEEeCCC
Q 033738            8 YVSSPPAFSNDV---KRLLVCT-SNTVSIFSTST   37 (112)
Q Consensus         8 ~v~~~~~~~~~~---~~l~~~~-~~~v~~~~~~~   37 (112)
                      .+.+ ++|+|+.   .+|+.+- .+.+.++|+++
T Consensus         2 AvR~-~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRC-CKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEE-EEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4666 8999854   5888777 69999999985

It contains a characteristic DLL sequence motif.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.32  E-value=0.18  Score=26.35  Aligned_cols=58  Identities=19%  Similarity=0.215  Sum_probs=36.2

Q ss_pred             cCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738           16 SNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus        16 ~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      ..|| +.|+.|+ |..|++|+-.  ..+..+.. ...+..+.-...+        .++.+-.+|+|-+|+-
T Consensus        11 d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~--------~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   11 DGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGG--------RFAYALANGTVGVYDR   70 (111)
T ss_pred             CCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCC--------EEEEEecCCEEEEEeC
Confidence            3344 5777887 8999999754  34555553 3456666555554        4556666676666653

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.20  E-value=0.48  Score=30.58  Aligned_cols=64  Identities=16%  Similarity=0.176  Sum_probs=44.1

Q ss_pred             eEEcCCCCEEEEEcCC------------eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738           13 PAFSNDVKRLLVCTSN------------TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus        13 ~~~~~~~~~l~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      ++.+|.|-.+|...|.            .|.+|+.. |+.+..+.-..+.+.++.|+.+.        -++....||.++
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e--------~LvvV~~dG~v~  104 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE--------ELVVVQSDGTVR  104 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC--------eEEEEEcCCEEE
Confidence            3455656555554432            47888765 66676666555788999998876        344677899999


Q ss_pred             EEeCC
Q 033738           81 YWDFS   85 (112)
Q Consensus        81 ~~~~~   85 (112)
                      ++|..
T Consensus       105 vy~~~  109 (410)
T PF04841_consen  105 VYDLF  109 (410)
T ss_pred             EEeCC
Confidence            99986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=95.05  E-value=0.057  Score=33.40  Aligned_cols=78  Identities=14%  Similarity=0.286  Sum_probs=48.8

Q ss_pred             cCCCeEEcCCCC-EEEEE-cCCeEEEEeCCCCce------e----------eeccccCCceEEEEEecCCCCccceeEEE
Q 033738            9 VSSPPAFSNDVK-RLLVC-TSNTVSIFSTSTGLQ------I----------SSLEGHTAPVTTVIVVPASTPATKILSYC   70 (112)
Q Consensus         9 v~~~~~~~~~~~-~l~~~-~~~~v~~~~~~~~~~------~----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   70 (112)
                      +.. ..|+|... .+... +.|.|++-|++....      +          .-+..-...+..+.|++.++       |+
T Consensus       224 ItS-aeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-------yI  295 (460)
T COG5170         224 ITS-AEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-------YI  295 (460)
T ss_pred             Hhh-cccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-------EE
Confidence            343 78888753 33333 479999999873210      1          11122345677889999995       55


Q ss_pred             EeeecCCcEEEEeCCC-CceEEEEec
Q 033738           71 WTASLDETIKYWDFST-PELLKTIDV   95 (112)
Q Consensus        71 ~~~~~d~~i~~~~~~~-~~~~~~~~~   95 (112)
                      ++-.. -++++||... ..++.++..
T Consensus       296 lsRdy-ltvkiwDvnm~k~pikTi~~  320 (460)
T COG5170         296 LSRDY-LTVKIWDVNMAKNPIKTIPM  320 (460)
T ss_pred             EEecc-ceEEEEecccccCCceeech
Confidence            45433 5899999874 456666644

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=95.00  E-value=0.51  Score=31.48  Aligned_cols=26  Identities=38%  Similarity=0.689  Sum_probs=22.5

Q ss_pred             EEEeeecCCcEEEEeCCCCceEEEEe
Q 033738           69 YCWTASLDETIKYWDFSTPELLKTID   94 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~~~~~   94 (112)
                      ++++.+.|+.+|+||+.++.++.+..
T Consensus       232 ~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  232 FLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCeEEEEec
Confidence            66799999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.96  E-value=0.15  Score=32.58  Aligned_cols=56  Identities=18%  Similarity=0.220  Sum_probs=34.6

Q ss_pred             EEEEecCCCCccceeEEEEeeecC--CcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           53 TVIVVPASTPATKILSYCWTASLD--ETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      ...++|+++   .++ +.++.+.+  ..++++|+++|+.+...-.......+.|.++++.+|
T Consensus       128 ~~~~Spdg~---~la-~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~  185 (414)
T PF02897_consen  128 GFSVSPDGK---RLA-YSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFF  185 (414)
T ss_dssp             EEEETTTSS---EEE-EEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEE
T ss_pred             eeeECCCCC---EEE-EEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEE
Confidence            567889984   333 43333333  469999999997654321111222389999987654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.95  E-value=0.12  Score=22.18  Aligned_cols=35  Identities=11%  Similarity=0.015  Sum_probs=25.0

Q ss_pred             CceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738           49 APVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP   87 (112)
Q Consensus        49 ~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~   87 (112)
                      +.+.++.|+|.....    .+++..-..+.+.++|++++
T Consensus         1 GAvR~~kFsP~~~~~----DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGN----DLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcc----cEEEEEccCCeEEEEEcccC
Confidence            357899999754100    15567778899999999853

It contains a characteristic DLL sequence motif.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=94.87  E-value=0.4  Score=27.92  Aligned_cols=61  Identities=21%  Similarity=0.184  Sum_probs=39.8

Q ss_pred             CCeEEEEeCCCCceeeecccc--CCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEec
Q 033738           27 SNTVSIFSTSTGLQISSLEGH--TAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDV   95 (112)
Q Consensus        27 ~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~   95 (112)
                      ++.|..+|.++++.+-.....  .....+.....++        .++.++.++.++.||..+|+.+.....
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~l~~~d~~tG~~~W~~~~   64 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGG--------RVYVASGDGNLYALDAKTGKVLWRFDL   64 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETT--------EEEEEETTSEEEEEETTTSEEEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCC--------EEEEEcCCCEEEEEECCCCCEEEEeec
Confidence            478899999888877655431  1222221332344        444567899999999999988766654

...

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.82  E-value=0.29  Score=34.25  Aligned_cols=63  Identities=13%  Similarity=0.165  Sum_probs=41.5

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      ++-+.+| .++.|+ +|.||+||-...+....+++-+.+|..+..+.+|+       ++++.+ +..+-+++.
T Consensus       583 ~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGk-------wilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  583 FATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGK-------WILATC-KTYLLLIDT  646 (794)
T ss_pred             EEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCc-------EEEEee-cceEEEEEE
Confidence            4445555 566666 89999999543344456667788999999999995       333332 345556553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.75  E-value=0.63  Score=29.68  Aligned_cols=27  Identities=7%  Similarity=0.146  Sum_probs=21.3

Q ss_pred             EEEeeecCCcEEEEeCCCCceEEEEec
Q 033738           69 YCWTASLDETIKYWDFSTPELLKTIDV   95 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~   95 (112)
                      .++.++.+|.++..|..+|+.+...+.
T Consensus       337 ~l~v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        337 YLVVGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            455678889999999999988776654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=94.58  E-value=0.73  Score=29.68  Aligned_cols=38  Identities=13%  Similarity=0.201  Sum_probs=29.0

Q ss_pred             cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEE
Q 033738           47 HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKT   92 (112)
Q Consensus        47 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~   92 (112)
                      ..++|++++.|.-|        +++.+..+|.+.+.|++....+..
T Consensus        85 ~~g~vtal~~S~iG--------Fvaigy~~G~l~viD~RGPavI~~  122 (395)
T PF08596_consen   85 KQGPVTALKNSDIG--------FVAIGYESGSLVVIDLRGPAVIYN  122 (395)
T ss_dssp             -S-SEEEEEE-BTS--------EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             cCCcEeEEecCCCc--------EEEEEecCCcEEEEECCCCeEEee
Confidence            46889999998777        788899999999999986665544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.52  E-value=0.57  Score=28.14  Aligned_cols=93  Identities=14%  Similarity=0.043  Sum_probs=52.5

Q ss_pred             CcCCCeEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            8 YVSSPPAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      .+.. .++++|++.++...  +  ..+.++...  ....... .......-.|++++.       .......+...+++.
T Consensus        25 ~~~s-~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~-------~W~v~~~~~~~~~~~   93 (253)
T PF10647_consen   25 DVTS-PAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGW-------VWTVDDGSGGVRVVR   93 (253)
T ss_pred             cccc-eEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCC-------EEEEEcCCCceEEEE
Confidence            3555 89999998877654  4  455555443  2222222 223456678888874       333444455555553


Q ss_pred             -CCCCceE-EEEecC--C-CEEEEEEcCCCcEe
Q 033738           84 -FSTPELL-KTIDVK--F-PIFSMVRGKKGFAV  111 (112)
Q Consensus        84 -~~~~~~~-~~~~~~--~-~v~~~~~~~~~~~~  111 (112)
                       ..++... ......  . .|.++.++|||..+
T Consensus        94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~Rv  126 (253)
T PF10647_consen   94 DSASGTGEPVEVDWPGLRGRITALRVSPDGTRV  126 (253)
T ss_pred             ecCCCcceeEEecccccCCceEEEEECCCCcEE
Confidence             3333222 222222  2 79999999999765

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.35  E-value=0.79  Score=29.08  Aligned_cols=33  Identities=6%  Similarity=-0.034  Sum_probs=18.6

Q ss_pred             cEEEEeCCCCceEEEEec-CCCEEEEEEcCCCcEe
Q 033738           78 TIKYWDFSTPELLKTIDV-KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        78 ~i~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~  111 (112)
                      .+.-++...++. ..+.. ......++|+|+|+.+
T Consensus       165 ~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~  198 (367)
T TIGR02604       165 GLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVF  198 (367)
T ss_pred             eEEEEecCCCeE-EEEecCcCCCccceECCCCCEE
Confidence            344445544433 33332 2366788999988764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.30  E-value=0.3  Score=31.83  Aligned_cols=100  Identities=15%  Similarity=-0.015  Sum_probs=56.2

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEE--ecCCCCccceeEEEEeeecCCcE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIV--VPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      .|...+.. ++.+.+|.++.+.+  |..++++|+.+...+..++-..-+ ..+.|  ++..    .+..+.++.-.++.+
T Consensus        51 aHL~~I~s-l~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd----~~s~IAVs~~~sg~i  124 (558)
T KOG0882|consen   51 AHLGVILS-LAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGD----KISLIAVSLFKSGKI  124 (558)
T ss_pred             HHHHHHHh-hhccccceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCC----eeeeEEeecccCCCc
Confidence            35556666 88899999998865  799999998765444333322211 12233  2322    122234455567889


Q ss_pred             EEEeCCCCceE--EEEecCC-CEEEEEEcCCCc
Q 033738           80 KYWDFSTPELL--KTIDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        80 ~~~~~~~~~~~--~~~~~~~-~v~~~~~~~~~~  109 (112)
                      .++|-....+.  ..-..|. +|..+.+++.+.
T Consensus       125 ~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D  157 (558)
T KOG0882|consen  125 FVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD  157 (558)
T ss_pred             EEECCcCCcCccceecccccCceEEEEeecccc
Confidence            99986644321  1112233 666666655543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.90  E-value=0.26  Score=29.15  Aligned_cols=59  Identities=17%  Similarity=0.219  Sum_probs=35.8

Q ss_pred             CEEEEEc-CCeEEEEeCCCCceeeeccccC-CceEEEEEecCCCCccceeEEEEee--ecCCcEEEEeCC
Q 033738           20 KRLLVCT-SNTVSIFSTSTGLQISSLEGHT-APVTTVIVVPASTPATKILSYCWTA--SLDETIKYWDFS   85 (112)
Q Consensus        20 ~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~~~~~~   85 (112)
                      .+..++. ++.|+.|+++..+.+.....|+ .++.....+..+.       .+..+  +.|..++.|++.
T Consensus       115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~-------~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDE-------FLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCc-------eEEeeccccchhhhhcchh
Confidence            3555665 8999999998777666555555 3344443433332       33344  666777777765

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.85  E-value=0.21  Score=20.62  Aligned_cols=35  Identities=26%  Similarity=0.154  Sum_probs=24.7

Q ss_pred             EEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEE
Q 033738           70 CWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVR  104 (112)
Q Consensus        70 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~  104 (112)
                      +++...++.+.++|..++..+..+........+.|
T Consensus         7 yv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         7 YVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            34556678999999988888777776554444544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=93.30  E-value=0.44  Score=33.76  Aligned_cols=67  Identities=21%  Similarity=0.184  Sum_probs=43.4

Q ss_pred             CCCCcCCCeEEcCCCCEEEE-Ec-CC-----eEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeec
Q 033738            5 GRSYVSSPPAFSNDVKRLLV-CT-SN-----TVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL   75 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~-~~-~~-----~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   75 (112)
                      +...+.. .+|||||+.|+. .+ .+     .|.+-++.+. ..+..+......|......++|+  +.|+ |+-.++.
T Consensus       348 ~~~~i~s-P~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gd--t~iv-yv~~a~n  422 (912)
T TIGR02171       348 DTISVYH-PDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGD--TVIV-YVSDASN  422 (912)
T ss_pred             CCCceec-CcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCC--eEEE-EEcCCCC
Confidence            4556676 899999999987 44 32     4888888763 33456666666677777777774  4343 4444443

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.30  E-value=0.98  Score=26.62  Aligned_cols=67  Identities=10%  Similarity=0.047  Sum_probs=43.2

Q ss_pred             EEcCCCCEEEEEc-CCeEEEEeCCCCceeeec-------c-------ccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738           14 AFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL-------E-------GHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus        14 ~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      .+..+++++.+.+ +|.+++||+.+++.+..-       .       .....|..+.++.+|.       .+++- .+|.
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-------PiV~l-sng~   88 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-------PIVTL-SNGD   88 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-------EEEEE-eCCC
Confidence            3556778887777 899999999877543211       1       2345577788887773       33333 3467


Q ss_pred             EEEEeCCCCc
Q 033738           79 IKYWDFSTPE   88 (112)
Q Consensus        79 i~~~~~~~~~   88 (112)
                      .+.|+..-+.
T Consensus        89 ~y~y~~~L~~   98 (219)
T PF07569_consen   89 SYSYSPDLGC   98 (219)
T ss_pred             EEEeccccce
Confidence            7888766443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.16  E-value=0.82  Score=27.53  Aligned_cols=45  Identities=13%  Similarity=0.108  Sum_probs=37.0

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEe
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVV   57 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   57 (112)
                      +++..+|++.++.- .++|...|..+|+.+..+.-....+++++|-
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            66777777777776 6899999999999888887778889999884

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.14  E-value=1.1  Score=26.89  Aligned_cols=99  Identities=12%  Similarity=0.099  Sum_probs=57.7

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEE-eCCCCce-eeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIF-STSTGLQ-ISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~-~~~~~~~-~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      .+.. ..|++++....... +...+++ +...+.. ...+.  ...+.|..+++|||+   .+++ +++....++.+.+-
T Consensus        67 ~l~~-PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG---~RvA-~v~~~~~~~~v~va  141 (253)
T PF10647_consen   67 SLTR-PSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDG---TRVA-VVVEDGGGGRVYVA  141 (253)
T ss_pred             cccc-ccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCC---cEEE-EEEecCCCCeEEEE
Confidence            4454 78999977666655 4555554 2222321 11222  122279999999999   4565 56666666788776


Q ss_pred             eCC---CC------ceEEEEec-CCCEEEEEEcCCCcEe
Q 033738           83 DFS---TP------ELLKTIDV-KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~---~~------~~~~~~~~-~~~v~~~~~~~~~~~~  111 (112)
                      -+.   .+      ........ ...+.++.|.+++..+
T Consensus       142 ~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  142 GVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             EEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence            432   23      11111111 2378899999988754

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.12  E-value=1.7  Score=31.96  Aligned_cols=68  Identities=12%  Similarity=0.097  Sum_probs=46.1

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      +.|.+ +.+..+.+.++.+. .|.|.+.|.++.. +.....-...|.+++|+|++.       .++-.+..+++.+.+
T Consensus        69 ~~i~s-~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee-------~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   69 DEIVS-VQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEE-------LLALITGRQTLLFMT  137 (1265)
T ss_pred             cceEE-EEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCc-------EEEEEeCCcEEEEEe
Confidence            45665 77888887777776 7888888877653 333333456789999999995       444555556666543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=92.86  E-value=1.3  Score=26.74  Aligned_cols=62  Identities=13%  Similarity=0.067  Sum_probs=40.0

Q ss_pred             eccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC--CEEEEEEcCCCcEe
Q 033738           43 SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF--PIFSMVRGKKGFAV  111 (112)
Q Consensus        43 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~  111 (112)
                      .+.+-...+..++|.|+..      .+++.....+.|..++. +|+.++.+....  ....+++..++.++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~------tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~v   79 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTG------TLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYV   79 (248)
T ss_dssp             E-TT--S-EEEEEEETTTT------EEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEE
T ss_pred             ECCCccCCccccEEcCCCC------eEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEE
Confidence            3444455689999999864      35567777888888886 488888876553  78888887776654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.77  E-value=0.43  Score=33.95  Aligned_cols=79  Identities=11%  Similarity=0.158  Sum_probs=52.6

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEec---------CCCCccceeEEEEeeecCCcEEEE
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP---------ASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      ++.+|+|++.+... -+.|.+.|+.....++.+++....  .+.|-+         .++....++ +.+-+-+.|.+-+|
T Consensus       327 lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGYRDA--sc~fv~vkek~~~s~~~~sRvAlF-LvIyAPRrgiLEVW  403 (1244)
T KOG2727|consen  327 LSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGYRDA--SCVFVEVKEKKGKSEPVKSRVALF-LVIYAPRRGILEVW  403 (1244)
T ss_pred             eeeCCCccEEEEecccCcEEEEehhhhhHHHHhcccccc--eeEEEEcccccCCCccCcCceeEE-EEEecccccHHHHH
Confidence            78899998887776 489999999887777777765443  233333         111111222 44556777889999


Q ss_pred             eCCCCceEEEEe
Q 033738           83 DFSTPELLKTID   94 (112)
Q Consensus        83 ~~~~~~~~~~~~   94 (112)
                      .+.+|..+..+.
T Consensus       404 ~~q~gpRV~Afn  415 (1244)
T KOG2727|consen  404 QMQTGPRVLAFN  415 (1244)
T ss_pred             HhccCCeEEEEe
Confidence            998887666554

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=92.33  E-value=0.24  Score=33.68  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=45.6

Q ss_pred             CcCCCeEEcC-CCCEEEEEcCCeEEEEeC-CCCc-eeeeccc----cCCceEEEEEecCCCCccceeEEEEeeec-CCcE
Q 033738            8 YVSSPPAFSN-DVKRLLVCTSNTVSIFST-STGL-QISSLEG----HTAPVTTVIVVPASTPATKILSYCWTASL-DETI   79 (112)
Q Consensus         8 ~v~~~~~~~~-~~~~l~~~~~~~v~~~~~-~~~~-~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-d~~i   79 (112)
                      .+.. +.++| .++++++..|+.+-+||. ...+ .+..+..    ....+..++|+|...      ..+++... .++|
T Consensus       197 ~vqG-~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt------glla~l~RdS~tI  269 (783)
T KOG1008|consen  197 YVQG-ITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT------GLLAVLSRDSITI  269 (783)
T ss_pred             hccc-ceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc------chhhhhccCcceE
Confidence            4555 77788 678887777999999994 3222 2222222    223488999999764      23345554 4789


Q ss_pred             EEEeCC
Q 033738           80 KYWDFS   85 (112)
Q Consensus        80 ~~~~~~   85 (112)
                      +++|+.
T Consensus       270 rlydi~  275 (783)
T KOG1008|consen  270 RLYDIC  275 (783)
T ss_pred             EEeccc
Confidence            999875

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.99  E-value=1.6  Score=25.77  Aligned_cols=22  Identities=9%  Similarity=0.329  Sum_probs=18.5

Q ss_pred             EEEeeecCCcEEEEeCCCCceE
Q 033738           69 YCWTASLDETIKYWDFSTPELL   90 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~   90 (112)
                      ++++.+.+|.+++||+.+++++
T Consensus        24 ~Ll~iT~~G~l~vWnl~~~k~~   45 (219)
T PF07569_consen   24 YLLAITSSGLLYVWNLKKGKAV   45 (219)
T ss_pred             EEEEEeCCCeEEEEECCCCeec
Confidence            6678889999999999987654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.82  E-value=2.8  Score=28.23  Aligned_cols=29  Identities=21%  Similarity=0.182  Sum_probs=23.7

Q ss_pred             EEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738           69 YCWTASLDETIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~   97 (112)
                      +++.+..++.++.+|.++|+.+...+...
T Consensus       474 lvf~g~~~G~l~a~D~~TGe~lw~~~~g~  502 (527)
T TIGR03075       474 LVFYGTLEGYFKAFDAKTGEELWKFKTGS  502 (527)
T ss_pred             EEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence            34457779999999999999998887655

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=91.41  E-value=0.04  Score=37.05  Aligned_cols=87  Identities=25%  Similarity=0.315  Sum_probs=50.8

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEec-CCCCccceeEEEEeeecCCcEEEEe-CCCCc-
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP-ASTPATKILSYCWTASLDETIKYWD-FSTPE-   88 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~-~~~~~-   88 (112)
                      ++|..+.+++.+|. ...+.++|++... ...-...+..+..+.+.| ...       |+ +...|+.+.+|| ..+-+ 
T Consensus       160 ~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~n-------Y~-cs~~dg~iAiwD~~rnien  230 (783)
T KOG1008|consen  160 VCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPN-------YF-CSNSDGDIAIWDTYRNIEN  230 (783)
T ss_pred             cccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCC-------ce-eccccCceeeccchhhhcc
Confidence            67777778888887 6789999987432 111122344566677777 332       44 445599999999 33221 


Q ss_pred             eEEEEec-----CCCEEEEEEcCCC
Q 033738           89 LLKTIDV-----KFPIFSMVRGKKG  108 (112)
Q Consensus        89 ~~~~~~~-----~~~v~~~~~~~~~  108 (112)
                      ++..+..     ...+..++|+|..
T Consensus       231 pl~~i~~~~N~~~~~l~~~aycPtr  255 (783)
T KOG1008|consen  231 PLQIILRNENKKPKQLFALAYCPTR  255 (783)
T ss_pred             HHHHHhhCCCCcccceeeEEeccCC
Confidence            1111111     1147777777743

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=91.40  E-value=2  Score=25.67  Aligned_cols=71  Identities=14%  Similarity=0.183  Sum_probs=38.2

Q ss_pred             CEEEEEc-CCeEEEEeCCCCcee-eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC
Q 033738           20 KRLLVCT-SNTVSIFSTSTGLQI-SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK   96 (112)
Q Consensus        20 ~~l~~~~-~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~   96 (112)
                      ..++.|+ ++.|.+|...-.... ..+......+-+.  -|.++..    ++..+++.++.+|.|+...++.+....++
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~--Ip~~~~~----~~~c~~~~dg~ir~~n~~p~k~~g~~g~h  143 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG--IPNGRDS----SLGCVGAQDGRIRACNIKPNKVLGYVGQH  143 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceec--ccccccc----ceeEEeccCCceeeeccccCceeeeeccc
Confidence            4556666 899999887632111 1222222222221  2333200    14457888999999998876665554443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=91.36  E-value=2.6  Score=26.98  Aligned_cols=66  Identities=8%  Similarity=0.039  Sum_probs=41.5

Q ss_pred             CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEE-EEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEe
Q 033738           19 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTT-VIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID   94 (112)
Q Consensus        19 ~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~   94 (112)
                      +..++.++ ++.+.-+|.++|+..-...... .+.+ .... ++        .++.+..++.++-+|.++|+.+....
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~-~~--------~v~v~~~~g~l~ald~~tG~~~W~~~  187 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVS-DG--------LVLVHTSNGMLQALNESDGAVKWTVN  187 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEE-CC--------EEEEECCCCEEEEEEccCCCEeeeec
Confidence            44566666 7999999999998765554322 2211 1111 23        23356677889999999888776554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=90.44  E-value=4.4  Score=28.05  Aligned_cols=77  Identities=16%  Similarity=0.239  Sum_probs=49.7

Q ss_pred             CCeEEEEeCCCCceee--eccccCCceEEEEEec--CCCCccceeEEEEeeecCCcEEEEeC-----CC----CceEEEE
Q 033738           27 SNTVSIFSTSTGLQIS--SLEGHTAPVTTVIVVP--ASTPATKILSYCWTASLDETIKYWDF-----ST----PELLKTI   93 (112)
Q Consensus        27 ~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~~~~~-----~~----~~~~~~~   93 (112)
                      ...+.+||...+....  .+ ...+.|.+++|..  ++.       .+++.|..+.|.++.-     ..    -..+..+
T Consensus        50 ~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~q-------siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i  121 (631)
T PF12234_consen   50 RSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQ-------SILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI  121 (631)
T ss_pred             CCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCC-------EEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence            4789999998775322  22 3567889999864  443       4557788888888732     11    1233333


Q ss_pred             ec----CCCEEEEEEcCCCcEe
Q 033738           94 DV----KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        94 ~~----~~~v~~~~~~~~~~~~  111 (112)
                      ..    +.++.+..|.++|..+
T Consensus       122 ~i~~~T~h~Igds~Wl~~G~Lv  143 (631)
T PF12234_consen  122 DISSHTPHPIGDSIWLKDGTLV  143 (631)
T ss_pred             EeecCCCCCccceeEecCCeEE
Confidence            22    2378889999988765

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=90.29  E-value=2.8  Score=25.60  Aligned_cols=91  Identities=13%  Similarity=0.136  Sum_probs=55.9

Q ss_pred             EEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc--cCC---ceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738           14 AFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG--HTA---PVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP   87 (112)
Q Consensus        14 ~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~   87 (112)
                      -+..|++.|+.+. ...++.+|.++.+..+.+..  ...   .++-+.|. ++.       +++..-....|...|..+|
T Consensus       134 GLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-------IyANVW~td~I~~Idp~tG  205 (264)
T PF05096_consen  134 GLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-------IYANVWQTDRIVRIDPETG  205 (264)
T ss_dssp             EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-------EEEEETTSSEEEEEETTT-
T ss_pred             EEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-------EEEEeCCCCeEEEEeCCCC
Confidence            3446777777665 78999999887765555432  222   34456665 452       5556666677888899999


Q ss_pred             ceEEEEecC----------------CCEEEEEEcCCCcEeC
Q 033738           88 ELLKTIDVK----------------FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        88 ~~~~~~~~~----------------~~v~~~~~~~~~~~~~  112 (112)
                      .++..+...                .-.+.++|.|.++.+|
T Consensus       206 ~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~  246 (264)
T PF05096_consen  206 KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLF  246 (264)
T ss_dssp             BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEE
T ss_pred             eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEE
Confidence            887766311                1368899998877654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=90.05  E-value=1.2  Score=22.35  Aligned_cols=39  Identities=15%  Similarity=-0.011  Sum_probs=24.3

Q ss_pred             eecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           73 ASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        73 ~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +..+|.+..||..+++....+..-.-.+.+++++|+..+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~v   71 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFV   71 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEE
Confidence            344577888888877665444444467778888888755

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.74  E-value=3.4  Score=25.78  Aligned_cols=92  Identities=9%  Similarity=0.085  Sum_probs=51.2

Q ss_pred             eEEcCCC-CEEEEEc--CCeEEEEeCCCCceeeeccccCCceE--EEEEecCCCCccceeEEEEeeec-----CCcEEEE
Q 033738           13 PAFSNDV-KRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVT--TVIVVPASTPATKILSYCWTASL-----DETIKYW   82 (112)
Q Consensus        13 ~~~~~~~-~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~-----d~~i~~~   82 (112)
                      +.++|.- ..++.+-  .....++|.+..+.+..+...++...  .=.|||++.       ++...-+     .|.|-+|
T Consensus        73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-------~LYATEndfd~~rGViGvY  145 (366)
T COG3490          73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-------LLYATENDFDPNRGVIGVY  145 (366)
T ss_pred             eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-------EEEeecCCCCCCCceEEEE
Confidence            4555543 3344443  34556777776655544443333221  225889995       4434333     3788999


Q ss_pred             eCCCC-ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           83 DFSTP-ELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      |.+.+ ..+-.+..+. ....+.|.+||+.+
T Consensus       146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtl  176 (366)
T COG3490         146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTL  176 (366)
T ss_pred             ecccccceecccccCCcCcceeEEecCCcEE
Confidence            98754 2334444444 55567778888765

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.65  E-value=1  Score=30.15  Aligned_cols=30  Identities=30%  Similarity=0.351  Sum_probs=22.4

Q ss_pred             eEEcC----CCCEEEEEc-CCeEEEEeCCCCceee
Q 033738           13 PAFSN----DVKRLLVCT-SNTVSIFSTSTGLQIS   42 (112)
Q Consensus        13 ~~~~~----~~~~l~~~~-~~~v~~~~~~~~~~~~   42 (112)
                      ..++.    +..++++.+ |+.+|+||+.+++++.
T Consensus       220 ~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  220 LAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             EEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred             EEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence            45555    567787888 9999999999988743

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.46  E-value=3.6  Score=25.66  Aligned_cols=94  Identities=12%  Similarity=0.075  Sum_probs=45.8

Q ss_pred             CCcCCCeEEcCCCCEEEEEcCC-eEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            7 SYVSSPPAFSNDVKRLLVCTSN-TVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~~~-~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      +.+.. +.-++||++++.+..| ...-||.-.. -.... .....++..+.|.|++.       +.+ ....+.++.=+.
T Consensus       145 gs~~~-~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~-------lw~-~~~Gg~~~~s~~  214 (302)
T PF14870_consen  145 GSIND-ITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGN-------LWM-LARGGQIQFSDD  214 (302)
T ss_dssp             --EEE-EEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS--------EEE-EETTTEEEEEE-
T ss_pred             ceeEe-EEECCCCcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCCCC-------EEE-EeCCcEEEEccC
Confidence            34444 6678999999888854 4556664321 11222 22457799999999984       322 347788888762


Q ss_pred             C-CCceEEE--Ee--cCC-CEEEEEEcCCCcE
Q 033738           85 S-TPELLKT--ID--VKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        85 ~-~~~~~~~--~~--~~~-~v~~~~~~~~~~~  110 (112)
                      . ..+.-..  ..  ... .+..++|.++++.
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~  246 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEI  246 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred             CCCccccccccCCcccCceeeEEEEecCCCCE
Confidence            2 1211111  11  112 4778888876653

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.08  E-value=4.7  Score=27.43  Aligned_cols=73  Identities=11%  Similarity=0.134  Sum_probs=42.8

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCC---------CCceeeec----------ccc-CCceEEEEEecCCCCccceeEEEE
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTS---------TGLQISSL----------EGH-TAPVTTVIVVPASTPATKILSYCW   71 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~---------~~~~~~~~----------~~~-~~~v~~~~~~~~~~~~~~~~~~~~   71 (112)
                      +..++.|..++-.+ +|.+.|+-.+         .++....+          ... .-.+...+|+|+.-.+.+++    
T Consensus       109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~----  184 (741)
T KOG4460|consen  109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV----  184 (741)
T ss_pred             EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE----
Confidence            66788898887666 7776654311         22211111          111 12345778999873224444    


Q ss_pred             eeecCCcEEEEeCCCCce
Q 033738           72 TASLDETIKYWDFSTPEL   89 (112)
Q Consensus        72 ~~~~d~~i~~~~~~~~~~   89 (112)
                      .-.+|..+|+||..+-..
T Consensus       185 iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EEecCcEEEEEecCCcch
Confidence            567789999999875443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.81  E-value=5.3  Score=26.71  Aligned_cols=54  Identities=20%  Similarity=0.131  Sum_probs=37.4

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCce----eeeccccCCceEEEEEecCC
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQ----ISSLEGHTAPVTTVIVVPAS   60 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~   60 (112)
                      .+.+.. ++||+|.+.++... +++|.+++....+.    ....+.....+....|+...
T Consensus        66 ~G~I~S-IkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~  124 (657)
T KOG2377|consen   66 KGEIKS-IKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST  124 (657)
T ss_pred             CCceeE-EEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe
Confidence            457776 99999999999887 89999998743221    12233344457777887664

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=88.38  E-value=4.8  Score=26.59  Aligned_cols=54  Identities=15%  Similarity=0.135  Sum_probs=28.1

Q ss_pred             CCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCc---eeeecc-c---------------cCCceEEEEEecCCC
Q 033738            7 SYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGL---QISSLE-G---------------HTAPVTTVIVVPAST   61 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~---~~~~~~-~---------------~~~~v~~~~~~~~~~   61 (112)
                      ..++. +.+|.|.++|+.++  +|.++.||+....   ...++. +               -.+....++.|.|++
T Consensus       312 ~LitD-I~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGk  386 (461)
T PF05694_consen  312 PLITD-ILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGK  386 (461)
T ss_dssp             ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSS
T ss_pred             CceEe-EEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCe
Confidence            45677 89999999998776  8999999997532   222221 0               112347888999995

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=88.05  E-value=5.5  Score=25.95  Aligned_cols=55  Identities=15%  Similarity=0.099  Sum_probs=36.0

Q ss_pred             CCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC--CCEEEEEEcCCCc
Q 033738           48 TAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK--FPIFSMVRGKKGF  109 (112)
Q Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~  109 (112)
                      .+++..++.||+++       +++.-..+|.+.+....-.+....+...  .....+.|+.+..
T Consensus       216 ~~~i~~iavSpng~-------~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  216 DGPIIKIAVSPNGK-------FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             CCCeEEEEECCCCC-------EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence            46789999999995       5556667788888765444455454444  3556677765543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=87.94  E-value=3.2  Score=27.16  Aligned_cols=44  Identities=5%  Similarity=-0.028  Sum_probs=33.5

Q ss_pred             cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738           47 HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        47 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~   97 (112)
                      ....+..+..+|.+.       +.+....=|+|.++|+..+..++.+++-.
T Consensus       306 ~~R~~~~i~~sP~~~-------laA~tDslGRV~LiD~~~~~vvrmWKGYR  349 (415)
T PF14655_consen  306 SKREGESICLSPSGR-------LAAVTDSLGRVLLIDVARGIVVRMWKGYR  349 (415)
T ss_pred             CCceEEEEEECCCCC-------EEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence            334567888999984       66666667999999999988887777543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.92  E-value=5.4  Score=27.12  Aligned_cols=43  Identities=16%  Similarity=0.071  Sum_probs=26.1

Q ss_pred             EEEeeecCCcEEEEeCCCCceEEEEec-CCCEEEEEEcCCCcEe
Q 033738           69 YCWTASLDETIKYWDFSTPELLKTIDV-KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~  111 (112)
                      |++.++..|.|++||.-..+.-..++. +..+-.+..+.+|+.+
T Consensus       575 yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~i  618 (776)
T COG5167         575 YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHI  618 (776)
T ss_pred             eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEE
Confidence            888999999999998643332222222 2255555555555543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.75  E-value=4.7  Score=24.88  Aligned_cols=74  Identities=12%  Similarity=0.109  Sum_probs=47.7

Q ss_pred             eEEcCCCC-EEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE
Q 033738           13 PAFSNDVK-RLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL   90 (112)
Q Consensus        13 ~~~~~~~~-~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~   90 (112)
                      +.+.+|.+ +++.|+ .+.+.-.|.++|+.+..-. -+.++.+-+.- -++       +++.++..+.+++.+..+|+..
T Consensus        16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgd-------fVV~GCy~g~lYfl~~~tGs~~   86 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGD-------FVVLGCYSGGLYFLCVKTGSQI   86 (354)
T ss_pred             EEEecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECC-------EEEEEEccCcEEEEEecchhhe
Confidence            44555654 555666 6888888999887653322 12334333333 232       6678999999999999999766


Q ss_pred             EEEec
Q 033738           91 KTIDV   95 (112)
Q Consensus        91 ~~~~~   95 (112)
                      ..+..
T Consensus        87 w~f~~   91 (354)
T KOG4649|consen   87 WNFVI   91 (354)
T ss_pred             eeeee
Confidence            55543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=87.48  E-value=4.1  Score=29.56  Aligned_cols=76  Identities=16%  Similarity=0.195  Sum_probs=42.9

Q ss_pred             EEcCCCCEEEEEc-CCeEEEEeCC-CC----ceeeeccccCC-ceEEEEEecCCCC---c-cceeEEEEeeecCCcEEEE
Q 033738           14 AFSNDVKRLLVCT-SNTVSIFSTS-TG----LQISSLEGHTA-PVTTVIVVPASTP---A-TKILSYCWTASLDETIKYW   82 (112)
Q Consensus        14 ~~~~~~~~l~~~~-~~~v~~~~~~-~~----~~~~~~~~~~~-~v~~~~~~~~~~~---~-~~~~~~~~~~~~d~~i~~~   82 (112)
                      .+||||..+++.. ||.++.|.+. ++    ++....+.|++ +-.|.-+......   . .+.+ .+-+..-++.+++|
T Consensus       242 ~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~-~Itttd~nre~k~w  320 (1283)
T KOG1916|consen  242 SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVL-RITTTDVNREEKFW  320 (1283)
T ss_pred             eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEE-EEecccCCcceeEe
Confidence            4799999999887 8988888653 22    34455566663 2223223221100   0 1111 23334446778889


Q ss_pred             eCCCCceE
Q 033738           83 DFSTPELL   90 (112)
Q Consensus        83 ~~~~~~~~   90 (112)
                      ....-+|+
T Consensus       321 ~~a~w~Cl  328 (1283)
T KOG1916|consen  321 AEAPWQCL  328 (1283)
T ss_pred             eccchhhh
Confidence            87666665

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.39  E-value=1.3  Score=17.97  Aligned_cols=15  Identities=7%  Similarity=-0.024  Sum_probs=10.0

Q ss_pred             cCCceEEEEEecCCC
Q 033738           47 HTAPVTTVIVVPAST   61 (112)
Q Consensus        47 ~~~~v~~~~~~~~~~   61 (112)
                      ....-....|+|+++
T Consensus         7 ~~~~~~~p~~SpDGk   21 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGK   21 (39)
T ss_dssp             SSSSEEEEEE-TTSS
T ss_pred             CCccccCEEEecCCC
Confidence            344557889999995

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=87.10  E-value=6.3  Score=25.62  Aligned_cols=84  Identities=11%  Similarity=0.138  Sum_probs=42.4

Q ss_pred             EEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEec-----CCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEec
Q 033738           21 RLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP-----ASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDV   95 (112)
Q Consensus        21 ~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~   95 (112)
                      +++.+++..++++...+.+.........-....+.+-+     .+       ..+++-..+|.++++.+..-+.+.....
T Consensus       228 ~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~-------~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  228 YVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGG-------YCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             EEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEE-------EEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             EEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCc-------eEEEEEECCCcEEEEECCCchHhhcccC
Confidence            55666788999998877665544332111122333321     22       2456778899999999987666665554


Q ss_pred             CC-----CEEEEEEcCCCcEe
Q 033738           96 KF-----PIFSMVRGKKGFAV  111 (112)
Q Consensus        96 ~~-----~v~~~~~~~~~~~~  111 (112)
                      +.     .+....++++|+.+
T Consensus       301 ~~~~d~~~~~~ssis~~Gdi~  321 (395)
T PF08596_consen  301 PPPLDSRRLSSSSISRNGDIF  321 (395)
T ss_dssp             SS---HHHHTT-EE-TTS-EE
T ss_pred             CCccccccccccEECCCCCEE
Confidence            32     23445567777654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.01  E-value=5.7  Score=25.00  Aligned_cols=46  Identities=17%  Similarity=0.217  Sum_probs=31.4

Q ss_pred             eEEcCCCCEEEEEcCCeEEEEeCCCCce---eeec----cccCCceEEEEEecC
Q 033738           13 PAFSNDVKRLLVCTSNTVSIFSTSTGLQ---ISSL----EGHTAPVTTVIVVPA   59 (112)
Q Consensus        13 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~---~~~~----~~~~~~v~~~~~~~~   59 (112)
                      ++|.|||+.+++-..|.|++++ ..+..   +..+    .........++++|+
T Consensus         7 ~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    7 MAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             EEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            8999999888876689999999 33332   2222    224456789999996

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=86.95  E-value=4.9  Score=24.18  Aligned_cols=61  Identities=20%  Similarity=0.287  Sum_probs=37.3

Q ss_pred             cCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738           16 SNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus        16 ~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      ...++.|+.|+ +| +.+++........... +...|..+...|+-+   .++    .- .|+.++++++..
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~---~ll----vL-sd~~l~~~~L~~   65 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELN---LLL----VL-SDGQLYVYDLDS   65 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccC---EEE----EE-cCCccEEEEchh
Confidence            34578888888 56 8999883332222222 223388888888763   222    22 348999998764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=86.30  E-value=2.5  Score=21.07  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=20.7

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCC
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTS   36 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~   36 (112)
                      ... +.++|+++.|+.++  .+.|+++..+
T Consensus        56 aNG-I~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   56 ANG-IAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             Cce-EEEcCCCCEEEEEeccCCeEEEEEec
Confidence            345 78899998888776  6888888754

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.14  E-value=8.8  Score=26.16  Aligned_cols=42  Identities=12%  Similarity=0.192  Sum_probs=32.1

Q ss_pred             CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCC
Q 033738           20 KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAST   61 (112)
Q Consensus        20 ~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (112)
                      -+++.|+ +|.|++||-...+....+++-+.+|..+..+.+|.
T Consensus       442 G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGK  484 (644)
T KOG2395|consen  442 GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGK  484 (644)
T ss_pred             ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCc
Confidence            3566777 89999999633334456777888999999999994

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=85.12  E-value=0.18  Score=33.18  Aligned_cols=90  Identities=9%  Similarity=0.089  Sum_probs=54.7

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeecccc-CCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGH-TAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~   89 (112)
                      ++|.-++..++...  .+.+.+||+++.. ..++... ...-.-..|++...       ..+.+...+.+.+++....+.
T Consensus        80 m~wDkegdvlavlAek~~piylwd~n~ey-tqqLE~gg~~s~sll~wsKg~~-------el~ig~~~gn~viynhgtsR~  151 (615)
T KOG2247|consen   80 MAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLESGGTSSKSLLAWSKGTP-------ELVIGNNAGNIVIYNHGTSRR  151 (615)
T ss_pred             hhhccccchhhhhhhcCCCeeechhhhhh-HHHHhccCcchHHHHhhccCCc-------cccccccccceEEEeccchhh
Confidence            67777776554443  6889999987643 2333221 11112356777663       344566788899998877665


Q ss_pred             EEEEecCC-CEEEEEEcCCCcE
Q 033738           90 LKTIDVKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        90 ~~~~~~~~-~v~~~~~~~~~~~  110 (112)
                      +....-|. .+.++++.+.+..
T Consensus       152 iiv~Gkh~RRgtq~av~lEd~v  173 (615)
T KOG2247|consen  152 IIVMGKHQRRGTQIAVTLEDYV  173 (615)
T ss_pred             hhhhcccccceeEEEeccccee
Confidence            54444233 7777888777654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=84.89  E-value=7.2  Score=24.24  Aligned_cols=81  Identities=10%  Similarity=0.059  Sum_probs=43.0

Q ss_pred             CCEEEEEcCCeEEEEeCCCCceeeeccc--cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC-CceEEEE-e
Q 033738           19 VKRLLVCTSNTVSIFSTSTGLQISSLEG--HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST-PELLKTI-D   94 (112)
Q Consensus        19 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~-~   94 (112)
                      +..++.+.++.+.+|++...+.+.....  ....+.++...  ++       +++.+.....+.++..+. +..+..+ +
T Consensus        98 ~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~-------~I~vgD~~~sv~~~~~~~~~~~l~~va~  168 (321)
T PF03178_consen   98 NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KN-------YILVGDAMKSVSLLRYDEENNKLILVAR  168 (321)
T ss_dssp             TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TT-------EEEEEESSSSEEEEEEETTTE-EEEEEE
T ss_pred             CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--cc-------EEEEEEcccCEEEEEEEccCCEEEEEEe
Confidence            4457667679999999876652222211  22244555443  42       556777777777764433 2222222 2


Q ss_pred             c--CCCEEEEEEcCCC
Q 033738           95 V--KFPIFSMVRGKKG  108 (112)
Q Consensus        95 ~--~~~v~~~~~~~~~  108 (112)
                      .  ..++.++.+-+++
T Consensus       169 d~~~~~v~~~~~l~d~  184 (321)
T PF03178_consen  169 DYQPRWVTAAEFLVDE  184 (321)
T ss_dssp             ESS-BEEEEEEEE-SS
T ss_pred             cCCCccEEEEEEecCC
Confidence            2  2267777776444

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=84.65  E-value=11  Score=26.10  Aligned_cols=66  Identities=11%  Similarity=0.057  Sum_probs=38.8

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCC--CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTST--GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      +.|+|....|+.-.  |-.| +.++..  .+...-+ ...+.|.|.+|.+||.   +   ++++.+..=.-++||-..
T Consensus       118 CVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~---R---LVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  118 CVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADI-KTSGLIHCACWTKDGQ---R---LVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             ccccCCCceEEEEecCceeE-eeeeeeCCceEEEec-cCCceEEEEEecCcCC---E---EEEEeCCeEEEEEecCch
Confidence            67888887776554  3222 223322  2222233 3567799999999995   2   334555555677888553

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=84.31  E-value=7.9  Score=24.26  Aligned_cols=87  Identities=11%  Similarity=0.075  Sum_probs=46.9

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEE-EEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTV-IVVPASTPATKILSYCWTASLDETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~   89 (112)
                      ..|.+++..|+...  .+.|.-|+..+++ ...+..... +.+. .....+        .++++.  .-+++++.+++..
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~-~~~~~~p~~-~~~~~~~d~~g--------~Lv~~~--~g~~~~~~~~~~~   97 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGK-KRVFPSPGG-FSSGALIDAGG--------RLIACE--HGVRLLDPDTGGK   97 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCc-eEEEECCCC-cccceeecCCC--------eEEEEc--cccEEEeccCCce
Confidence            66788888777776  6889999887664 333332222 2333 333343        222332  3455556555544


Q ss_pred             EEEEec---C---CCEEEEEEcCCCcEe
Q 033738           90 LKTIDV---K---FPIFSMVRGKKGFAV  111 (112)
Q Consensus        90 ~~~~~~---~---~~v~~~~~~~~~~~~  111 (112)
                      ...+..   .   ...+.....|+|.+.
T Consensus        98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~w  125 (307)
T COG3386          98 ITLLAEPEDGLPLNRPNDGVVDPDGRIW  125 (307)
T ss_pred             eEEeccccCCCCcCCCCceeEcCCCCEE
Confidence            222221   1   145566777777754

>smart00564 PQQ beta-propeller repeat

Probab=84.20  E-value=1.8  Score=16.66  Aligned_cols=23  Identities=35%  Similarity=0.328  Sum_probs=17.7

Q ss_pred             EEeeecCCcEEEEeCCCCceEEE
Q 033738           70 CWTASLDETIKYWDFSTPELLKT   92 (112)
Q Consensus        70 ~~~~~~d~~i~~~~~~~~~~~~~   92 (112)
                      ++.++.++.+..+|.++|+.+..
T Consensus         9 v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        9 VYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEcCCCEEEEEEcccCcEEEE
Confidence            44667789999999988877654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.94  E-value=2.1  Score=31.55  Aligned_cols=94  Identities=11%  Similarity=0.015  Sum_probs=54.4

Q ss_pred             eEEcCCCCEEEEEc---CCeEEEEeCCCCcee-----eec------cccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738           13 PAFSNDVKRLLVCT---SNTVSIFSTSTGLQI-----SSL------EGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus        13 ~~~~~~~~~l~~~~---~~~v~~~~~~~~~~~-----~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +...+|+...++..   +..|..||+......     .-+      .....-..++.|.|.-.      .-.+.+..|+.
T Consensus       106 ~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp------~n~av~l~dls  179 (1405)
T KOG3630|consen  106 FVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP------LNSAVDLSDLS  179 (1405)
T ss_pred             EEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc------chhhhhccccc
Confidence            44566665544332   357889998653211     111      11222335778888754      23456777888


Q ss_pred             EEEEeCCCC-ceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           79 IKYWDFSTP-ELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        79 i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      |++..+... .....++.....++++|+|.|+.++
T Consensus       180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~  214 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLF  214 (1405)
T ss_pred             hhhhhhhhhhhhhcccCcccceeeEEeccccceee
Confidence            888765432 2233344445889999999987653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.33  E-value=7.7  Score=24.28  Aligned_cols=59  Identities=14%  Similarity=0.012  Sum_probs=34.7

Q ss_pred             cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC--CEEEEEEcCCCcE
Q 033738           45 EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF--PIFSMVRGKKGFA  110 (112)
Q Consensus        45 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~  110 (112)
                      .+....+.++.|+|+.+       .+.+......--++-..+|..+.+++...  ....+.|..+|++
T Consensus        82 ~g~~~nvS~LTynp~~r-------tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~f  142 (316)
T COG3204          82 LGETANVSSLTYNPDTR-------TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQF  142 (316)
T ss_pred             ccccccccceeeCCCcc-------eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEE
Confidence            34445589999999985       33344444444455445588877776443  4444555544443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=83.21  E-value=11  Score=25.10  Aligned_cols=52  Identities=10%  Similarity=0.063  Sum_probs=35.6

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCce--eeecc-----ccCCceEEEEEecCC
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQ--ISSLE-----GHTAPVTTVIVVPAS   60 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~--~~~~~-----~~~~~v~~~~~~~~~   60 (112)
                      .-.. ++|.|||+.|++-. .|.|++++...+..  ...+.     ..++....++++|+-
T Consensus        31 ~Pw~-maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        31 KPWA-LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CceE-EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3444 89999999888887 69999987654421  11111     135667899999884

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=82.24  E-value=9.7  Score=23.74  Aligned_cols=38  Identities=26%  Similarity=0.292  Sum_probs=29.4

Q ss_pred             cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecccc
Q 033738            9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGH   47 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~   47 (112)
                      +.+ +...++|++|++.. -..|.+.+-++++.+-.+.+.
T Consensus       146 iNs-V~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~  184 (299)
T PF14269_consen  146 INS-VDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK  184 (299)
T ss_pred             eee-eeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence            454 66678889998887 589999998888877776544

>PF01011 PQQ: PQQ enzyme repeat family

Probab=81.77  E-value=2.7  Score=17.06  Aligned_cols=26  Identities=15%  Similarity=0.047  Sum_probs=21.6

Q ss_pred             eeecCCcEEEEeCCCCceEEEEecCC
Q 033738           72 TASLDETIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        72 ~~~~d~~i~~~~~~~~~~~~~~~~~~   97 (112)
                      .++.++.++-.|.++|+.+..+....
T Consensus         5 ~~~~~g~l~AlD~~TG~~~W~~~~~~   30 (38)
T PF01011_consen    5 VGTPDGYLYALDAKTGKVLWKFQTGP   30 (38)
T ss_dssp             EETTTSEEEEEETTTTSEEEEEESSS
T ss_pred             EeCCCCEEEEEECCCCCEEEeeeCCC
Confidence            45889999999999999988876543

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.25  E-value=8.6  Score=28.75  Aligned_cols=88  Identities=15%  Similarity=0.109  Sum_probs=48.0

Q ss_pred             eEEcCCC--CEEEEEcCCeEEEEeCCCCc-eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738           13 PAFSNDV--KRLLVCTSNTVSIFSTSTGL-QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~--~~l~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~   89 (112)
                      +.|.|.-  +.++.-.|..|++.-+.... ....++ -....++++|+|.|.       .++.+-..|++.-|... .+.
T Consensus       161 ~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGK-------Ql~iG~nnGt~vQy~P~-lei  231 (1405)
T KOG3630|consen  161 NVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGK-------QLFIGRNNGTEVQYEPS-LEI  231 (1405)
T ss_pred             ccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccc-------eeeEecCCCeEEEeecc-cce
Confidence            5666643  22223336777766543221 112222 345578999999995       44577778888877543 222


Q ss_pred             EEEEec-----CCCEEEEEEcCCCc
Q 033738           90 LKTIDV-----KFPIFSMVRGKKGF  109 (112)
Q Consensus        90 ~~~~~~-----~~~v~~~~~~~~~~  109 (112)
                      ...+..     ...|.++.|-....
T Consensus       232 k~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  232 KSEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             eecccCCCcCCCcceeEEEEeccee
Confidence            222221     12677777765443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=80.93  E-value=8.7  Score=27.61  Aligned_cols=65  Identities=12%  Similarity=0.201  Sum_probs=38.3

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      .+.. +.-+|.|+.++.+. |+++.+++.........+. ...+-..+.|...|         +++..+|+..--|.
T Consensus        16 ~~~a-iqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg---------l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   16 FTTA-IQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG---------LVTATSDRRALAWK   81 (1636)
T ss_pred             eeee-eeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc---------eEEEeccchhheee
Confidence            3444 66679999999998 9999999976543322222 11222334444433         23555666665564

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-11
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	5e-09
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	4e-08
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	9e-08
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-07
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-05
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-04
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	7e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-10
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-10
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	6e-10
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-09
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	8e-09
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	5e-08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-07
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	5e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	6e-04
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	1e-09
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	2e-08
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	3e-08
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	1e-07
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	3e-07
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	1e-04
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	4e-09
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-08
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	5e-08
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-07
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-07
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	4e-06
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	2e-05
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	6e-09
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	2e-07
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	2e-07
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-05
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	4e-05
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-04
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	9e-09
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	6e-06
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	2e-05
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	4e-05
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	8e-05
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	8e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	9e-09
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-08
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-07
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	8e-07
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-04
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-08
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	8e-08
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	7e-07
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	2e-06
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	5e-06
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	7e-06
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	2e-05
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-08
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-07
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	7e-06
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-04
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-04
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	1e-08
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	9e-05
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	1e-04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	7e-04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	9e-04
3ow8_A	321	WD repeat-containing protein 61; structural genomi	3e-08
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-07
3ow8_A	321	WD repeat-containing protein 61; structural genomi	3e-07
3ow8_A	321	WD repeat-containing protein 61; structural genomi	6e-07
3ow8_A	321	WD repeat-containing protein 61; structural genomi	6e-07
3ow8_A	321	WD repeat-containing protein 61; structural genomi	8e-06
3ow8_A	321	WD repeat-containing protein 61; structural genomi	4e-05
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	3e-08
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	7e-07
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	4e-06
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	4e-06
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	2e-05
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	4e-05
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	7e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-08
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-08
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	5e-08
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-07
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	5e-07
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-04
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	3e-08
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	4e-08
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	1e-06
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	3e-05
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	5e-05
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	7e-05
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	3e-08
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	5e-07
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-06
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-05
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-05
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	7e-05
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	5e-04
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	3e-08
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	5e-08
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	1e-07
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	6e-07
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	3e-05
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	3e-05
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	4e-04
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	4e-08
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	1e-06
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	1e-04
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	2e-04
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	7e-04
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	4e-08
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	2e-06
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	3e-06
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	2e-05
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	1e-04
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	4e-04
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	6e-04
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	5e-08
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	5e-08
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	4e-07
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	1e-04
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	2e-04
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	6e-04
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	5e-08
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	3e-07
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	3e-05
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	6e-05
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	6e-08
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	6e-08
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	2e-07
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	1e-05
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	4e-04
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	7e-08
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-07
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-07
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	3e-07
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	6e-05
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-04
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	1e-07
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	6e-07
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	6e-06
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	3e-05
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	2e-04
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	8e-04
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	1e-07
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	2e-06
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	2e-07
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	5e-07
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	1e-06
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	8e-04
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	2e-07
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	3e-06
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	5e-06
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	4e-05
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	2e-04
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	2e-04
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	2e-07
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	4e-05
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	4e-07
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	3e-06
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	1e-05
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	1e-05
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	7e-04
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	4e-07
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	6e-06
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	6e-06
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	1e-04
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	1e-04
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	5e-04
3jro_A	753	Fusion protein of protein transport protein SEC13	7e-07
3jro_A	753	Fusion protein of protein transport protein SEC13	6e-06
3jro_A	753	Fusion protein of protein transport protein SEC13	4e-05
3jro_A	753	Fusion protein of protein transport protein SEC13	2e-04
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	8e-07
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	1e-06
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	3e-06
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	6e-06
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	1e-05
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	1e-04
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-06
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	2e-04
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	5e-04
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	1e-06
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	2e-04
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	4e-04
2pm7_B	297	Protein transport protein SEC13, protein transport	1e-06
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-05
2pm7_B	297	Protein transport protein SEC13, protein transport	6e-05
2pm7_B	297	Protein transport protein SEC13, protein transport	7e-04
3jrp_A	379	Fusion protein of protein transport protein SEC13	1e-06
3jrp_A	379	Fusion protein of protein transport protein SEC13	5e-05
3jrp_A	379	Fusion protein of protein transport protein SEC13	7e-05
3jrp_A	379	Fusion protein of protein transport protein SEC13	3e-04
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	4e-06
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	2e-05
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	6e-04
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	4e-06
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	1e-05
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	2e-05
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	5e-05
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	5e-06
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	1e-05
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	2e-05
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	4e-04
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	7e-06
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	8e-06
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	6e-04
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	1e-05
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	6e-05
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	1e-04
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	3e-04
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	4e-04
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	6e-04
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	7e-04
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	2e-05
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	3e-05
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	1e-04
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	4e-05
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	6e-05
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	4e-04
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	8e-05
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	5e-04
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	7e-04

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            FS D    ++       +S F   +G  +  +E    PV   I   +   + K  +   
Sbjct: 213 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT--- 269

Query: 72  TASLDETIKYWDFSTPELLKT 92
               D TI+ WD +T + ++ 
Sbjct: 270 -VGADATIRVWDVTTSKCVQK 289

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 2   IRGGRSYVSSPPAFSNDVK--RLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVV 57
           I   +  V     F+      +         T+ ++  +T   +         +    V 
Sbjct: 245 IEDDQEPVQGG-IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303

Query: 58  PASTPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
             +T   +I+S     SLD T+ +++    E+LKTI
Sbjct: 304 VVATGNGRIIS----LSLDGTLNFYELGHDEVLKTI 335

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 14  AFSNDVKRLLVC-TSNTVSIFSTSTGLQISS-LEGHTAPVTTVIVVPASTPATKILSYCW 71
           + S     +        + ++   +    +S     T+ +  +   PA   A +      
Sbjct: 495 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 554

Query: 72  ---TASLDETIKYWDFSTP-ELLKT 92
              T SLD  I  +    P +++K 
Sbjct: 555 LVATGSLDTNIFIYSVKRPMKIIKA 579

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 47.6 bits (114), Expect = 9e-08
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 12/88 (13%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLL-VCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           +   +         +    R++ +    T++ +       + ++ GH   +T + V P  
Sbjct: 292 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP-- 349

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPE 88
                      + S D  I  W  S+  
Sbjct: 350 ---------LISGSYDGRIMEWSSSSMH 368

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 9/83 (10%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 14  AFSNDVKRLLVCTS---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
           ++  + +RL V      N     S  +G  +  + GH+  +    +  +     + ++  
Sbjct: 123 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP--MRSMT-- 178

Query: 71  WTASLDETIKYWDFSTPELLKTI 93
                D ++ ++     +   + 
Sbjct: 179 --VGDDGSVVFYQGPPFKFSASD 199

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 14  AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA 73
           + +ND    ++   + + I  + TG  I S+  ++       V  +       L      
Sbjct: 413 SANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS---PGSAVSLSQNYVAVGL---EEG 466

Query: 74  SLDETIKYWDFSTPELLKT 92
           +  +  K  D      LKT
Sbjct: 467 NTIQVFKLSDLEVSFDLKT 485

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 12/97 (12%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISS---LEGHTAPVTTVIV 56
           + G    +++            +      +V  +        +S        + V  V  
Sbjct: 156 VSGHSQRINAC-HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF 214

Query: 57  VPASTPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
            P S     +++       D  I  +D  + E LK I
Sbjct: 215 SPDSG--EFVIT----VGSDRKISCFDGKSGEFLKYI 245

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 9/97 (9%), Positives = 29/97 (29%), Gaps = 9/97 (9%)

Query: 3   RGGRSYVSSPPAFSNDVKRLLVCTSNTVSI----FSTSTGLQISSLEGHTAPVTTVIVVP 58
              R++ +   ++      +      +  +       S    +    GH + V T +   
Sbjct: 15  STQRNFTTHL-SYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 73

Query: 59  ASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDV 95
               +  + S          +  W ++  +   +++V
Sbjct: 74  PIKGSQYLCS----GDESGKVIVWGWTFDKESNSVEV 106

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 13/70 (18%)

Query: 28  NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87
             +  +S+S+  Q      H+  + ++     ++ A +  S     S D+T+K    +  
Sbjct: 357 GRIMEWSSSSMHQ-----DHSNLIVSL----DNSKAQEYSS----ISWDDTLKVNGITKH 403

Query: 88  ELLKTIDVKF 97
           E      V  
Sbjct: 404 EFGSQPKVAS 413

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           I+     V    AFS+D   +  C++   V I+ ++TG  + + + H+  V        S
Sbjct: 653 IKAHEDEVLCC-AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKS 711

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
                      T S D  +K WD +  E   T+
Sbjct: 712 NHLLLA-----TGSNDFFLKLWDLNQKECRNTM 739

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 14  AFSNDVKRLLVCTS---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
            F+N    LL+ T      + ++  +     +++ GHT  V         +P  ++L+  
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC----RFSPDDELLA-- 759

Query: 71  WTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKG 108
            + S D T++ WD  +    K+I+VK    S     + 
Sbjct: 760 -SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 796

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 54.1 bits (130), Expect = 6e-10
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           +R     V     FS D +R+  C +  T+ +F   TG ++  ++ H   V         
Sbjct: 611 VRPHTDAVYHA-CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTID 94
              + I +     S D+ +K WD +T +L+ T D
Sbjct: 670 ---SYIAT----CSADKKVKIWDSATGKLVHTYD 696

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 11/94 (11%)

Query: 2    IRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
              G +  V     F+ D K L+  +  + + +++  TG  +  L+ H   V         
Sbjct: 999  GVGHKKAVRHI-QFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDF----RL 1052

Query: 61   TPATKILSYCWTASLDETIKYWDFSTPELLKTID 94
               +++LS     S D T+K W+  T  + +   
Sbjct: 1053 LQDSRLLS----WSFDGTVKVWNVITGRIERDFT 1082

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 50.6 bits (121), Expect = 8e-09
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 7/81 (8%)

Query: 14   AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA 73
                D + L      TV +++  TG        H   V +  +   +   TK  S     
Sbjct: 1051 RLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA---TKFSS----T 1103

Query: 74   SLDETIKYWDFSTPELLKTID 94
            S D+T K W F     L  + 
Sbjct: 1104 SADKTAKIWSFDLLSPLHELK 1124

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 8/83 (9%)

Query: 14   AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
            A S+D  +    ++  T  I+S      +  L+GH   V              + +    
Sbjct: 1092 AISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDG---ILLAT---- 1144

Query: 73   ASLDETIKYWDFSTPELLKTIDV 95
               +  I+ W+ S  +LL +   
Sbjct: 1145 GDDNGEIRIWNVSDGQLLHSCAP 1167

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 2    IRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
                 + VS     S  ++ +        + I         SS  GH   V  +      
Sbjct: 957  DYLPEAQVSCC-CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI----QF 1011

Query: 61   TPATKILSYCWTASLDETIKYWDFSTPELL 90
            T   K L    ++S D  I+ W++ T + +
Sbjct: 1012 TADGKTLI---SSSEDSVIQVWNWQTGDYV 1038

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
            FS      ++  S   V +++  + L+++   GH + V  V+  P     +  L+    
Sbjct: 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG---SSFLT---- 899

Query: 73  ASLDETIKYWDFSTPELLKTI 93
           AS D+TI+ W+         I
Sbjct: 900 ASDDQTIRVWETKKVCKNSAI 920

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 48.3 bits (115), Expect = 5e-08
 Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 9/94 (9%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISS-LEGHTAPVTTVIVVPAS 60
                  V    ++S D  +++V   N V +F   T   ++    GH + +      P  
Sbjct: 794 PEDVEVIVKCC-SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD 852

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTID 94
                 +     A     ++ W+  +   +    
Sbjct: 853 H---LAVI----ALSQYCVELWNIDSRLKVADCR 879

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 8/70 (11%)

Query: 14   AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA 73
             FS D K L V     +  ++ +TG    +   +   +  + V P        ++     
Sbjct: 1185 CFSPDSKTL-VSAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDF---RTYVT----V 1236

Query: 74   SLDETIKYWD 83
                 +    
Sbjct: 1237 DNLGILYILQ 1246

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 20/103 (19%)

Query: 2    IRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISS---------LEGHTAPV 51
            ++G    V    AFS D   L        + I++ S G  + S            H   V
Sbjct: 1123 LKGHNGCVRCS-AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1181

Query: 52   TTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID 94
            T V      +P +K L      S    +K+W+ +T +  +T  
Sbjct: 1182 TDV----CFSPDSKTL-----VSAGGYLKWWNVATGDSSQTFY 1215

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 11/81 (13%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
            F  +   +L   +   + + +  TG          A V+        +P  + ++    
Sbjct: 929 VFQENETMVLAVDNIRGLQLIAGKTG---QIDYLPEAQVSCC----CLSPHLEYVA---F 978

Query: 73  ASLDETIKYWDFSTPELLKTI 93
              D  IK  +     +  + 
Sbjct: 979 GDEDGAIKIIELPNNRVFSSG 999

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 11/94 (11%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
            RG  S+V     FS D    L  +   T+ ++ T    +             V+     
Sbjct: 878 CRGHLSWVHGV-MFSPDGSSFLTASDDQTIRVWETKKVCKN--SAIVLKQEIDVVFQENE 934

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTID 94
           T    +L+          ++     T ++    +
Sbjct: 935 T---MVLA----VDNIRGLQLIAGKTGQIDYLPE 961

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 35  TSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID 94
           T   L    +  HT  V         +   + +    +   D+T++ +   T E L  I 
Sbjct: 602 TIKNLSRLVVRPHTDAVYHA----CFSQDGQRI---ASCGADKTLQVFKAETGEKLLDIK 654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 52.8 bits (128), Expect = 1e-09
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
            FS + K +L  T  NT+ ++  S G  + +  GH      +    + T    I+S    
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS---- 254

Query: 73  ASLDETIKYWDFSTPELLKTID 94
            S D  +  W+  T E+++ + 
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQ 276

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
           A+S+D   L+  +   T+ I+  S+G  + +L+GH+  V      P S     I+S    
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS---NLIVS---- 124

Query: 73  ASLDETIKYWDFSTPELLKTI 93
            S DE+++ WD  T + LKT+
Sbjct: 125 GSFDESVRIWDVKTGKCLKTL 145

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 49.0 bits (118), Expect = 3e-08
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 10/82 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            F+     L+V  S   +V I+   TG  + +L  H+ PV+ V         + I+S   
Sbjct: 114 NFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG---SLIVS--- 166

Query: 72  TASLDETIKYWDFSTPELLKTI 93
            +S D   + WD ++ + LKT+
Sbjct: 167 -SSYDGLCRIWDTASGQCLKTL 187

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPA 59
           + G    VSS   FS + + L   +S    + I+    G    ++ GH   ++ V     
Sbjct: 19  LAGHTKAVSSV-KFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76

Query: 60  STPATKILSYCWTASLDETIKYWDFSTPELLKT 92
           S     ++S    AS D+T+K WD S+ + LKT
Sbjct: 77  S---NLLVS----ASDDKTLKIWDVSSGKCLKT 102

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 9/81 (11%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPASTPATKILSYCW 71
            F+ D   ++  +      I+ T++G  + +L +    PV+ V   P       IL+   
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK---YILA--- 209

Query: 72  TASLDETIKYWDFSTPELLKT 92
            A+LD T+K WD+S  + LKT
Sbjct: 210 -ATLDNTLKLWDYSKGKCLKT 229

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 7/57 (12%)

Query: 36 STGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKT 92
                 +L GHT  V++V   P       + S    +S D+ IK W     +  KT
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNG---EWLAS----SSADKLIKIWGAYDGKFEKT 60

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 51.4 bits (124), Expect = 4e-09
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
           +F +  K L  C++  T+ ++       I ++ GH   V++V ++P       I+S    
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD---HIVS---- 209

Query: 73  ASLDETIKYWDFSTPELLKTI 93
           AS D+TIK W+  T   +KT 
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTF 230

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 14/93 (15%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVP-----ASTPATKIL 67
             + D   +  C++  TV ++  +T    + L  H   V  +   P     + + AT   
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300

Query: 68  SYCW--------TASLDETIKYWDFSTPELLKT 92
           +           + S D+TIK WD ST   L T
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 5   GRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPA 63
             +  S           LL  +   T+ ++  STG+ + +L GH   V  V+        
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG--- 350

Query: 64  TKILSYCWTASLDETIKYWDFSTPELLKTID 94
             ILS     + D+T++ WD+     +KT++
Sbjct: 351 KFILS----CADDKTLRVWDYKNKRCMKTLN 377

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 3   RGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
            G RS V+    F      + V  S   T+ ++   TG    +L+GHT  V  +    + 
Sbjct: 105 SGHRSPVTRV-IFHPVFSVM-VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKT 92
                + S     S D TIK WDF   E ++T
Sbjct: 163 ---KLLAS----CSADMTIKLWDFQGFECIRT 187

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
           +   +    +V  S   T+ ++   TG  + +  GH   V  V         T I S   
Sbjct: 199 SIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG---TLIAS--- 251

Query: 72  TASLDETIKYWDFSTPELLKTI 93
             S D+T++ W  +T E    +
Sbjct: 252 -CSNDQTVRVWVVATKECKAEL 272

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 28  NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87
                +      +  +L GH +PVT VI  P  +    ++S    AS D TIK WD+ T 
Sbjct: 89  RDPKEWIPRPP-EKYALSGHRSPVTRVIFHPVFS---VMVS----ASEDATIKVWDYETG 140

Query: 88  ELLKTI 93
           +  +T+
Sbjct: 141 DFERTL 146

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 14  AFSNDVKRLL-VCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
            F +  K +L      T+ ++       + +L  H   VT++            +    T
Sbjct: 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL----DFHKTAPYVV---T 397

Query: 73  ASLDETIKYWD 83
            S+D+T+K W+
Sbjct: 398 GSVDQTVKVWE 408

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 50.7 bits (122), Expect = 6e-09
 Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           +     Y +        ++R ++ T+   + +  ++  LQ    + H + +T +   P+ 
Sbjct: 93  MLKRADYTAVD-TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG 151

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKT 92
                ++S    +S D  +K W        +T
Sbjct: 152 ---EALIS----SSQDMQLKIWSVKDGSNPRT 176

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            F    + L + +S    + I+S   G    +L GH A VT + ++        +LS   
Sbjct: 146 KFFPSGEAL-ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG---RNVLS--- 198

Query: 72  TASLDETIKYWDFSTPELLKTID 94
            ASLD TI+ W+  T   + T +
Sbjct: 199 -ASLDGTIRLWECGTGTTIHTFN 220

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 11/95 (11%), Positives = 23/95 (24%), Gaps = 13/95 (13%)

Query: 3   RGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTG--LQISSLEGHTAPVTTVIVVP 58
                  +S      +    +        ++ +   +        L     P+  V    
Sbjct: 287 SKFTCSCNSL-TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV---- 341

Query: 59  ASTPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
                   +S    +  D +IK    S PE  +  
Sbjct: 342 YFAAGALFVS----SGFDTSIKLDIISDPESERPA 372

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 9/79 (11%), Positives = 22/79 (27%), Gaps = 8/79 (10%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISS-LEGHTAPVTTVIVVPASTPATKILSYCW 71
            F    K ++       +++ +  +  Q        T    ++ V          +    
Sbjct: 254 EFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV---DGNNANYIY--- 307

Query: 72  TASLDETIKYWDFSTPELL 90
               +  +  WD  +PE  
Sbjct: 308 AGYENGMLAQWDLRSPECP 326

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 10/94 (10%), Positives = 21/94 (22%), Gaps = 11/94 (11%)

Query: 2   IRGGRSYVSSPP--AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVP 58
           + G    V +     F      L          +F+T      S +              
Sbjct: 49  VLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR-DGSKMLKRADYTAVDTAKL 107

Query: 59  ASTPATKILSYCWTASLDETIKYWDFSTPELLKT 92
                 + +      + +  IK  D +     + 
Sbjct: 108 QM---RRFIL----GTTEGDIKVLDSNFNLQREI 134

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 18/98 (18%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
           A  +  + +L  +   T+ ++   TG  I +      P   V  +       + L    T
Sbjct: 188 AIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIST 247

Query: 73  -----------------ASLDETIKYWDFSTPELLKTI 93
                              +   I   +  + E    +
Sbjct: 248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL 285

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 50.6 bits (122), Expect = 9e-09
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
           A S D K    C S   ++++       +   +GHT   + +      +     L   WT
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI----DISNDGTKL---WT 200

Query: 73  ASLDETIKYWDFSTPELLKTIDVKFPIFS 101
             LD T++ WD      L+  D    IFS
Sbjct: 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFS 229

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 42.5 bits (101), Expect = 6e-06
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 11/93 (11%)

Query: 3   RGGRSYVSSPPAFSNDVKRLLVCTS-NTVSI--FSTSTGLQISSLEGHTAPVTTVIVVPA 59
               +Y+ S      D   L+V    +T+SI   +  T    + L         + + P 
Sbjct: 94  LNRDNYIRSC-KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152

Query: 60  STPATKILSYCWTASLDETIKYWDFSTPELLKT 92
           S         C++   D  I  WD     L++ 
Sbjct: 153 SK-------VCFSCCSDGNIAVWDLHNQTLVRQ 178

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 9/80 (11%)

Query: 14  AFSNDVKRLLVC-TSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
            +    + L V   S+ V +   +   +   L  H + V ++          K      +
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSL----KFAYCGKWF---VS 282

Query: 73  ASLDETIKYWDFSTPELLKT 92
              D  +  W       +  
Sbjct: 283 TGKDNLLNAWRTPYGASIFQ 302

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 12/92 (13%)

Query: 4  GGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAST 61
           G     S    + D +   V       +         QI++L  H   V  V      +
Sbjct: 7  MGSKPAYSF-HVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAV----TIS 60

Query: 62 PATKILSYCWTASLDETIKYWDFSTPELLKTI 93
            T+ +    T      +K WD S P     +
Sbjct: 61 NPTRHVY---TGGKG-CVKVWDISHPGNKSPV 88

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 11/80 (13%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
             SND    L      NTV  +    G Q+      T+ + ++       P  + L    
Sbjct: 190 DISND-GTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSL----GYCPTGEWL---A 240

Query: 72  TASLDETIKYWDFSTPELLK 91
                  ++    + P+  +
Sbjct: 241 VGMESSNVEVLHVNKPDKYQ 260

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 10/86 (11%), Positives = 24/86 (27%), Gaps = 14/86 (16%)

Query: 14  AFSNDVKRLLVCTSNTVSIFSTSTG-----LQISSLEGHTAPVTTVIVVPASTPATKILS 68
             SN  + +       V ++  S       +           + +  ++P       ++ 
Sbjct: 58  TISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG---CTLIV 114

Query: 69  YCWTASLDETIKYWDFS--TPELLKT 92
                    T+  WD +  TP +   
Sbjct: 115 ----GGEASTLSIWDLAAPTPRIKAE 136

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 50.5 bits (121), Expect = 9e-09
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            F    K  ++  S    + +F+ +TG ++   E H   + ++ V P       +LS   
Sbjct: 62  KFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLS--- 114

Query: 72  TASLDETIKYWDFST 86
             S D T+K W++  
Sbjct: 115 -GSDDLTVKLWNWEN 128

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 14 AFSNDVKRLLVC-TSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
           F      +L    S  V I++  T +++ S++    PV     +        I+     
Sbjct: 20 DFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK---NWIIV---- 72

Query: 73 ASLDETIKYWDFSTPELLKT 92
           S D  I+ ++++T E +  
Sbjct: 73 GSDDFRIRVFNYNTGEKVVD 92

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 14  AFSNDV-KRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
            +     K  ++  S   T+ I+   T   +++LEGH + V+  +  P       I+S  
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL---PIIIS-- 245

Query: 71  WTASLDETIKYWDFSTPELLKTID 94
              S D T+K W+ ST ++ KT++
Sbjct: 246 --GSEDGTLKIWNSSTYKVEKTLN 267

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 45.1 bits (107), Expect = 8e-07
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQIS-SLEGHTAPVTTVIVVPASTPATKILSYCW 71
           A       +L  +   TV +++      +  + EGH   V  V   P     +   S   
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP--STFAS--- 158

Query: 72  TASLDETIKYWDFSTPELLKTI 93
              LD T+K W         T+
Sbjct: 159 -GCLDRTVKVWSLGQSTPNFTL 179

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)

Query: 3   RGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPA 59
            G   +V    AF+              TV ++S        +L  G    V  V   P 
Sbjct: 137 EGHEHFVMCV-AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195

Query: 60  STPATKILSYCWTASLDETIKYWDFSTPELLKT 92
                 +++    AS D TIK WD+ T   + T
Sbjct: 196 PD-KPYMIT----ASDDLTIKIWDYQTKSCVAT 223

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            F      +++  S   T+ I+++ST     +L         +   P        ++   
Sbjct: 235 VFHPT-LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR--KNYIA--- 288

Query: 72  TASLDETIKYWDFSTPELLKTID-VKFPIFS 101
            +  D           E   ++D V   ++S
Sbjct: 289 -SGFDNGFTVLSLGNDEPTLSLDPVGKLVWS 318

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 14/93 (15%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPA 59
           ++G   +V +         R+ V  S  NT+ ++S  TG  + +L GHT  V +  +   
Sbjct: 114 LKGHDDHVIT--CLQFCGNRI-VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD- 169

Query: 60  STPATKILSYCWTASLDETIKYWDFSTPELLKT 92
                 I+S     S D T+K W+  T E + T
Sbjct: 170 ----NIIIS----GSTDRTLKVWNAETGECIHT 194

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 47.7 bits (114), Expect = 8e-08
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
              ++   +++  S   T+ +++  TG  I +L GHT+ V  + +        +++S   
Sbjct: 166 QMRDN---IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-----KRVVS--- 214

Query: 72  TASLDETIKYWDFSTPELLKT 92
             S D T++ WD  T + L  
Sbjct: 215 -GSRDATLRVWDIETGQCLHV 234

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 28  NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87
            ++ ++   TG  I +L GH +  + + +         ++S     + D T+K WD  T 
Sbjct: 299 TSIRVWDVETGNCIHTLTGHQSLTSGMELKD-----NILVS----GNADSTVKIWDIKTG 349

Query: 88  ELLKT 92
           + L+T
Sbjct: 350 QCLQT 354

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 24/86 (27%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTV-----IVVPASTPATKI 66
                    +V  S   T+ ++   TG  +  L GH A V  V      VV         
Sbjct: 206 HLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--------- 253

Query: 67  LSYCWTASLDETIKYWDFSTPELLKT 92
                + + D  +K WD  T   L T
Sbjct: 254 -----SGAYDFMVKVWDPETETCLHT 274

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 15/69 (21%)

Query: 28  NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPA---TKILSYCWTASLDETIKYWDF 84
             V ++   T   + +L+GHT  V ++              ++S     SLD +I+ WD 
Sbjct: 259 FMVKVWDPETETCLHTLQGHTNRVYSL--------QFDGIHVVS----GSLDTSIRVWDV 306

Query: 85  STPELLKTI 93
            T   + T+
Sbjct: 307 ETGNCIHTL 315

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 42.3 bits (100), Expect = 7e-06
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 17/85 (20%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEG---HTAPVTTVIVVPASTPATKILS 68
              ++   +LV  +  +TV I+   TG  + +L+G   H + VT +           +++
Sbjct: 326 ELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-----NFVIT 377

Query: 69  YCWTASLDETIKYWDFSTPELLKTI 93
               +S D T+K WD  T E ++ +
Sbjct: 378 ----SSDDGTVKLWDLKTGEFIRNL 398

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 1   MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
            +   R  V  P    +  K   +      + +          L+GH   V T +     
Sbjct: 71  PLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCL----Q 126

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKT 92
               +I+S     S D T+K W   T + L+T
Sbjct: 127 FCGNRIVS----GSDDNTLKVWSAVTGKCLRT 154

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 5/80 (6%), Positives = 13/80 (16%), Gaps = 7/80 (8%)

Query: 14  AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA 73
              +      V    T  I+  + G     L+     +  +             +     
Sbjct: 32  KNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDI---IVQSA----R 84

Query: 74  SLDETIKYWDFSTPELLKTI 93
              +                
Sbjct: 85  PYGQRAVLKFAQYTGAHAIA 104

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 2/102 (1%), Positives = 12/102 (11%), Gaps = 17/102 (16%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISS-------LEGHTAPVT 52
                    +                  +  +         + +                
Sbjct: 104 AGRHTPGTFTN-QLQTSFSEP-RLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYV 161

Query: 53  TVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID 94
            + +   +    K         L   +          +    
Sbjct: 162 DIGIPANNK--GKQSI----GCLFWLLARMVLQMRGTILPGH 197

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 5/77 (6%), Positives = 13/77 (16%), Gaps = 10/77 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
               D   +           +         +    HT    T  +  +    ++      
Sbjct: 73  ENPQD-IIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF---SEPRL--- 125

Query: 72  TASLDETIKYWDFSTPE 88
              L +           
Sbjct: 126 -LILTDPRTDHQPIKES 141

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 3/91 (3%), Positives = 12/91 (13%), Gaps = 14/91 (15%)

Query: 3   RGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSL-----EGHTAPVTTVI 55
                          + K           ++         I                   
Sbjct: 154 TDSPMRYVDI-GIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPE 212

Query: 56  VVPASTPATKILSYCWTASLDETIKYWDFST 86
              A     +  +        +     +++ 
Sbjct: 213 E--AKEQEEEEAA----LVAPDYGAVAEYAA 237

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 3/57 (5%), Positives = 9/57 (15%), Gaps = 8/57 (14%)

Query: 36 STGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKT 92
          S   Q   +               +                 T   +  +  +  + 
Sbjct: 13 SQREQDIQMMLAADVHLGT----KNCDFQMERY----VYKRRTDGIYIINLGKTWEK 61

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
            +S+D  ++   +   T  ++  S+  Q   +  H APV T+     +   + +++    
Sbjct: 93  CWSDDGSKVFTASCDKTAKMWDLSSN-QAIQIAQHDAPVKTI-HWIKAPNYSCVMT---- 146

Query: 73  ASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
            S D+T+K+WD  +   +  + +    +   
Sbjct: 147 GSWDKTLKFWDTRSSNPMMVLQLPERCYCAD 177

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 39.2 bits (92), Expect = 9e-05
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 8/84 (9%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
           AF      L    S    S +      ++ + E    P++             I +Y   
Sbjct: 280 AFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISAC----CFNHNGNIFAY--- 332

Query: 73  ASLDETIKYWDFSTPELLKTIDVK 96
           AS  +  K  +F  P+    I ++
Sbjct: 333 ASSYDWSKGHEFYNPQKKNYIFLR 356

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 13/79 (16%)

Query: 14  AFSNDVK--RLLVCTS--NTVSI--FSTSTGLQISSLEGHTAPVTTVIVVPASTPATKIL 67
           +FS        L+  S  N V       S      + + HT PV  V      +      
Sbjct: 46  SFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS------ 99

Query: 68  SYCWTASLDETIKYWDFST 86
              +TAS D+T K WD S+
Sbjct: 100 -KVFTASCDKTAKMWDLSS 117

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 6/90 (6%), Positives = 18/90 (20%), Gaps = 9/90 (10%)

Query: 4   GGRSYVSSPPAFSNDVKRLLVCTSNTVSIF--STSTGLQISSLEGHTAPVTTVIVVPAST 61
             R Y +           ++      + ++                      V +     
Sbjct: 170 PERCYCAD--VIYPMA--VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQ 225

Query: 62  PATKILSYCWTASLDETIKYWDFSTPELLK 91
                 +     S++  +     + P   K
Sbjct: 226 ---NKPTGFALGSIEGRVAIHYINPPNPAK 252

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 36.1 bits (84), Expect = 9e-04
 Identities = 6/79 (7%), Positives = 20/79 (25%), Gaps = 9/79 (11%)

Query: 8  YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKIL 67
          + ++   F      +    +             I         +  +   P + P   ++
Sbjct: 4  FGTTS-GFGTSGTSMFGSATTDNHNPMK----DIEVTSSPDDSIGCLSFSPPTLPGNFLI 58

Query: 68 SYCWTASLDETIKYWDFST 86
          +     S    ++ W+   
Sbjct: 59 A----GSWANDVRCWEVQD 73

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 49.0 bits (118), Expect = 3e-08
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
           A+S D K L    +    ++IF  +TG  + +LEGH  P+ ++   P S     +++   
Sbjct: 171 AYSPDGKYL-ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS---QLLVT--- 223

Query: 72  TASLDETIKYWDFSTPELLKT 92
            AS D  IK +D     L  T
Sbjct: 224 -ASDDGYIKIYDVQHANLAGT 243

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
            FS D + L+  +    + I+         +L GH + V  V   P     T  +S    
Sbjct: 213 TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD---THFVS---- 265

Query: 73  ASLDETIKYWDFSTPELLKT 92
           +S D+++K WD  T   + T
Sbjct: 266 SSSDKSVKVWDVGTRTCVHT 285

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           I  G     +  AFS D + L   T    V+IF   +G +  SL+     + ++   P  
Sbjct: 118 IDAGPVDAWTL-AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG 176

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
                + S     ++D  I  +D +T +LL T+
Sbjct: 177 ---KYLAS----GAIDGIINIFDIATGKLLHTL 202

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 45.1 bits (108), Expect = 6e-07
 Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 10/83 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
             S+    +   +S    + ++    G QI S++       T+   P S     + +   
Sbjct: 87  DISHT-LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS---QYLAT--- 139

Query: 72  TASLDETIKYWDFSTPELLKTID 94
             +    +  +   + +   ++D
Sbjct: 140 -GTHVGKVNIFGVESGKKEYSLD 161

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 45.1 bits (108), Expect = 6e-07
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 28 NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST- 86
          N     +   G+     + H   + +V         ++ +    T SLD+ +K W +   
Sbjct: 12 NLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVV---TGSLDDLVKVWKWRDE 68

Query: 87 -PELLKT 92
            +L  +
Sbjct: 69 RLDLQWS 75

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 42.1 bits (100), Expect = 8e-06
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 14/88 (15%)

Query: 14  AFSNDVK---RLLVCTS--NTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKI 66
           A+  + K     +V  S  + V ++           SLEGH   V +V +          
Sbjct: 39  AWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL---PIA 95

Query: 67  LSYCWTASLDETIKYWDFSTPELLKTID 94
            S    +SLD  I+ WD    + +K+ID
Sbjct: 96  AS----SSLDAHIRLWDLENGKQIKSID 119

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
           AF  D     V +S   +V ++   T   + +   H   V  V         +KI+S   
Sbjct: 255 AFCPDDTHF-VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG---SKIVS--- 307

Query: 72  TASLDETIKYWD 83
               D+ I  +D
Sbjct: 308 -VGDDQEIHIYD 318

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 49.0 bits (118), Expect = 3e-08
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
           A  +D    + C++   + +    TG  + + EGH + V  +       P   I+S    
Sbjct: 191 AVVDDG-HFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI----KLLPNGDIVS---- 241

Query: 73  ASLDETIKYWDFSTPELLKTI 93
              D T++ W      L + I
Sbjct: 242 CGEDRTVRIWSKENGSLKQVI 262

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 44.8 bits (107), Expect = 7e-07
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 9/60 (15%)

Query: 35 TSTGLQIS-SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
            TG Q+S +L+GH   V  V     +   +K+ S     S D T++ W      L   +
Sbjct: 4  PFTGYQLSATLKGHDQDVRDV----VAVDDSKVAS----VSRDGTVRLWSKDDQWLGTVV 55

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 16/95 (16%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLV----CTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVV 57
           +  G+ +++S   + ++ + LL        N V +F+TS    + +L GH   V ++   
Sbjct: 55  VYTGQGFLNSV-CYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ 113

Query: 58  PASTPATKILSYCWTASLDETIKYWDFSTPELLKT 92
                   ++S     S D+T K W      L+  
Sbjct: 114 D-----GVVIS----GSWDKTAKVWK--EGSLVYN 137

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 14/84 (16%)

Query: 14 AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
             +D    +   S   TV ++S       + +      + +V           +L    
Sbjct: 25 VAVDD--SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS---EKELLLF--- 76

Query: 72 TASLDETIKY---WDFSTPELLKT 92
              D  I     +  S  + L T
Sbjct: 77 -GGKDTMINGVPLFATSGEDPLYT 99

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 12/92 (13%)

Query: 3   RGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEG-HTAPVTTVIVVPAS 60
           +   + V      S    + L  ++  T+ ++     ++     G H   V  +    A 
Sbjct: 139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKT--FSGIHNDVVRHL----AV 192

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKT 92
                 +S     S D  IK  D  T ++L+T
Sbjct: 193 VDDGHFIS----CSNDGLIKLVDMHTGDVLRT 220

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 37  TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
            G  + +L+ H A V    VV  S    K L+    AS D+TIK W     +++KT 
Sbjct: 131 EGSLVYNLQAHNASVWDAKVV--SFSENKFLT----ASADKTIKLWQ--NDKVIKTF 179

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 10/74 (13%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
               +   ++ C    TV I+S   G     +      + +V           I+     
Sbjct: 232 KLLPN-GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSV----DCMSNGDIIV---- 282

Query: 73  ASLDETIKYWDFST 86
            S D  ++ +    
Sbjct: 283 GSSDNLVRIFSQEK 296

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 14  AFSNDVKRLL-VCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
                 + L+ +  +  ++  +   G       GH   +T +    +S+   K L   ++
Sbjct: 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITAL----SSSADGKTL---FS 341

Query: 73  ASLDETIKYWDFSTPELLKT 92
           A  +  I  WD ST    + 
Sbjct: 342 ADAEGHINSWDISTGISNRV 361

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 48.7 bits (117), Expect = 4e-08
 Identities = 9/82 (10%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCW 71
            +S D  ++   ++  T+ I++ +T     ++  G       + ++        ++S   
Sbjct: 246 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ---ALVS--- 299

Query: 72  TASLDETIKYWDFSTPELLKTI 93
             S +  I + +     + +  
Sbjct: 300 -ISANGFINFVNPELGSIDQVR 320

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 48.3 bits (116), Expect = 5e-08
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQI---SSLEGHTAPVTTVIVVPASTPATKILSY 69
           AFSN+   L+       V  +S +   ++   +S   HTA V  V   P +    ++ + 
Sbjct: 498 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV---RLAT- 553

Query: 70  CWTASLDETIKYWDFSTPELLKTI 93
               SLD ++  W+ + P     I
Sbjct: 554 ---GSLDNSVIVWNMNKPSDHPII 574

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 14  AFSNDVKRLLVC---TSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
           ++ ++ KR+            +F   TG    +L G    + +V   P+     +I+S  
Sbjct: 110 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP--FRIIS-- 165

Query: 71  WTASLDETIKYWDFSTPELLKTI 93
              S D T+  ++    +   T 
Sbjct: 166 --GSDDNTVAIFEGPPFKFKSTF 186

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 10/94 (10%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPA 59
           + G    ++S   F       ++  S  NTV+IF        S+   HT  V +V   P 
Sbjct: 143 LTGQARAMNSV-DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD 201

Query: 60  STPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
               +   S       D TI  ++          
Sbjct: 202 G---SLFAS----TGGDGTIVLYNGVDGTKTGVF 228

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 14  AFSNDVKRLL-VCTSNTVSIFSTSTGLQISSLE-------GHTAPVTTVIVVPASTPATK 65
            ++ D           T+ +++   G +    E        H+  V  +   P     TK
Sbjct: 197 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG---TK 253

Query: 66  ILSYCWTASLDETIKYWDFSTPELLKTI 93
           I S    AS D+TIK W+ +T ++ KTI
Sbjct: 254 IAS----ASADKTIKIWNVATLKVEKTI 277

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPASTPATKILSYCW 71
           + S D K L    +   ++ +  STG+      + H   +T +     +T    + +   
Sbjct: 331 SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI----KTTSKGDLFT--- 383

Query: 72  TASLDETIKYWDFSTPELLKTIDVKFPIFSMVRG 105
             S D+ +K        +  +  V   + S   G
Sbjct: 384 -VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 416

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 11/84 (13%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTP-ATKILSYC 70
           A SND + + V    + V ++  S   +       H A +T+V    A +     +++  
Sbjct: 455 ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV----AFSNNGAFLVA-- 508

Query: 71  WTASLDETIKYWDFSTPELLKTID 94
                   +  +  +    L   +
Sbjct: 509 --TDQSRKVIPYSVANNFELAHTN 530

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 13/78 (16%)

Query: 14 AFSNDVKRLLVCTS---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
            +    ++  C      TV + S +          H+   T     P+         YC
Sbjct: 25 GNTPAGDKIQYCNGTSVYTVPVGSLTDTEI---YTEHSHQTTVAKTSPSGY-------YC 74

Query: 71 WTASLDETIKYWDFSTPE 88
           +  +   ++ WD +   
Sbjct: 75 ASGDVHGNVRIWDTTQTT 92

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 14  AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA 73
            + +D K ++      + ++  +       L GH  P++ +     +     +LS    A
Sbjct: 213 EWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN---KLLLS----A 265

Query: 74  SLDETIKYWDFSTPELLKT 92
           S D T++ W          
Sbjct: 266 SDDGTLRIWHGGNGNSQNC 284

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
            F++  K LL  +   T+ I+    G   +   GH+  + +     +     K++S    
Sbjct: 254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA----SWVGDDKVIS---- 305

Query: 73  ASLDETIKYWDFSTPELLKT 92
            S+D +++ W      LL  
Sbjct: 306 CSMDGSVRLWSLKQNTLLAL 325

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 7/88 (7%), Positives = 23/88 (26%), Gaps = 10/88 (11%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            ++ D   + +     N   +++  +G  +   E      +++     S   +  +   W
Sbjct: 156 KWNKDGTHI-ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW 214

Query: 72  -------TASLDETIKYWDFSTPELLKT 92
                         I  +  +       
Sbjct: 215 VDDDKFVIPGPKGAIFVYQITEKTPTGK 242

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 11/79 (13%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
           ++  D K  ++  S   +V ++S      ++       P+    +        K      
Sbjct: 296 SWVGDDK--VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG---QKYAV--- 347

Query: 72  TASLDETIKYWDFSTPELL 90
            A +D  +  +D       
Sbjct: 348 -AFMDGQVNVYDLKKLNSK 365

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
           A+S+D   + V       + +++  TG  ++ L  H AP+ +V      T    I+S   
Sbjct: 115 AWSHDGNSI-VTGVENGELRLWNK-TGALLNVLNFHRAPIVSVKWNKDGT---HIIS--- 166

Query: 72  TASLDETIKYWDFSTPELLKTID 94
              ++     W+  +  +++  +
Sbjct: 167 -MDVENVTILWNVISGTVMQHFE 188

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 9/82 (10%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQIS-SLEGHTAPVTTVIVVPASTPATKILSYCW 71
             S D ++  V      V+++        S SL G+   +   +            S   
Sbjct: 337 RISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPL---PIPLYASYQS--- 390

Query: 72  TASLDETIK-YWDFSTPELLKT 92
           +   D      W+ +  ++   
Sbjct: 391 SQDNDYIFDLSWNCAGNKISVA 412

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 48.7 bits (117), Expect = 3e-08
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 15/85 (17%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISS----LEGHTAPVTTVIVVPASTPATKIL 67
           A++      + C    N  SI++  T          L GHT  ++            +I+
Sbjct: 104 AYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC----RFLDDNQIV 158

Query: 68  SYCWTASLDETIKYWDFSTPELLKT 92
           +    +S D T   WD  T +   T
Sbjct: 159 T----SSGDTTCALWDIETGQQTTT 179

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 10/91 (10%)

Query: 3   RGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAST 61
            G   Y+S    F +D  +++  +   T +++   TG Q ++  GHT  V ++ + P + 
Sbjct: 140 AGHTGYLSCC-RFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT- 196

Query: 62  PATKILSYCWTASLDETIKYWDFSTPELLKT 92
                +S     + D + K WD       +T
Sbjct: 197 --RLFVS----GACDASAKLWDVREGMCRQT 221

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            +  D  RLL+  S    + I+ + T  ++ ++   ++ V T    P+      +     
Sbjct: 62  HWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG---NYVAC--- 114

Query: 72  TASLDETIKYWDFSTPE 88
              LD     ++  T E
Sbjct: 115 -GGLDNICSIYNLKTRE 130

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
           +FS    RLL+        +++      +   L GH   V+ + V         + +   
Sbjct: 277 SFSKS-GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG---MAVAT--- 329

Query: 72  TASLDETIKYWD 83
             S D  +K W+
Sbjct: 330 -GSWDSFLKIWN 340

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 10/81 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
           + + D  RL V  +   +  ++    G+   +  GH + +  +   P         +   
Sbjct: 191 SLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG---NAFAT--- 243

Query: 72  TASLDETIKYWDFSTPELLKT 92
             S D T + +D    + L T
Sbjct: 244 -GSDDATCRLFDLRADQELMT 263

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 11/80 (13%)

Query: 14 AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA 73
               + ++    +N +            +L GH A +  +     S     +LS    A
Sbjct: 25 CADATLSQI----TNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSR---LLLS----A 73

Query: 74 SLDETIKYWDFSTPELLKTI 93
          S D  +  WD  T   +  I
Sbjct: 74 SQDGKLIIWDSYTTNKVHAI 93

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 12/83 (14%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTG--LQISSLEGHTAPVTTVIVVPASTPATKILSY 69
            F  +        S   T  +F       L   S +     +T+V    +      +L+ 
Sbjct: 233 CFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR---LLLA- 287

Query: 70  CWTASLDETIKYWDFSTPELLKT 92
                 D     WD    +    
Sbjct: 288 ---GYDDFNCNVWDALKADRAGV 307

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 48.8 bits (117), Expect = 3e-08
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 28  NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87
                +      +I  ++GH  P+ TV    A +P     +   +   D  I+   F   
Sbjct: 295 FEARFYHKIFEEEIGRVQGHFGPLNTV----AISPQGTSYA---SGGEDGFIRLHHFEKS 347

Query: 88  ELLKTIDVKFPI 99
                 DV+   
Sbjct: 348 YFDFKYDVEKAA 359

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 4   GGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQ-ISSLEGHTAPVTTVIVVPAST 61
            G    +    +S   K ++       +S +  S   + + S++ H   ++ +     S 
Sbjct: 173 EGLDAATVA-GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQF---SP 228

Query: 62  PATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFS 101
             T  ++    +S D      D ST ++LK  +   P+ +
Sbjct: 229 DLTYFIT----SSRDTNSFLVDVSTLQVLKKYETDCPLNT 264

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
            ++ +   L  C+  ++ S++ +  G ++ +L+GHT  + ++ V   +      ++    
Sbjct: 39  KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT---KYCVT---- 91

Query: 73  ASLDETIKYWDFSTPELLKTID 94
            S D +IK WD S  + + T  
Sbjct: 92  GSADYSIKLWDVSNGQCVATWK 113

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 10/88 (11%), Positives = 25/88 (28%), Gaps = 9/88 (10%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTV-------IVVPASTPATK 65
            FS D+   +  +      +   ST   +   E    P+ T         ++       K
Sbjct: 225 QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC-PLNTAVITPLKEFIILGGGQEAK 283

Query: 66  ILSYCWTASLDETIKYWDFSTPELLKTI 93
            ++           +++     E +  +
Sbjct: 284 DVTTTSANEGKFEARFYHKIFEEEIGRV 311

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 14/96 (14%), Positives = 22/96 (22%), Gaps = 17/96 (17%)

Query: 14  AFSNDVKRLLVCTS------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKIL 67
            FS      L           +++I+          L   +      I            
Sbjct: 122 EFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI--ITHEGLDAAT 179

Query: 68  SYCW--------TASLDETIKYWDFST-PELLKTID 94
              W            D  I  +D S   E + +ID
Sbjct: 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID 215

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 27 SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86
          S+  +++   + ++   L GH  P+T V           + S     S D +   W    
Sbjct: 11 SSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEG---DLLFS----CSKDSSASVWYSLN 63

Query: 87 PELLKT 92
           E L T
Sbjct: 64 GERLGT 69

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 8/84 (9%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
                 K   V  S   ++ ++  S G  +++ +    PV  V   P        L+   
Sbjct: 81  DVDCFTKYC-VTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCG---NYFLAILD 135

Query: 72  -TASLDETIKYWDFSTPELLKTID 94
                  +I  ++         + 
Sbjct: 136 NVMKNPGSINIYEIERDSATHELT 159

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 48.7 bits (117), Expect = 4e-08
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 10/84 (11%)

Query: 14  AFSNDVKR-LLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
            FS +    ++V       V +++ +     ++  GHT  + TV V P         S C
Sbjct: 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-------SLC 230

Query: 71  WTASLDETIKYWDFSTPELLKTID 94
            +   D     WD +  + L T+D
Sbjct: 231 ASGGKDGQAMLWDLNEGKHLYTLD 254

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 14/86 (16%)

Query: 14  AFSNDVKRLLVCTS--NTVSI-----FSTSTGLQISSLEGHTAPVTTVIVVPASTPATKI 66
           A +     +++  S   T+ +       T+ G+   +L GH+  V+ V++          
Sbjct: 45  ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ---FA 101

Query: 67  LSYCWTASLDETIKYWDFSTPELLKT 92
           LS     S D T++ WD +T    + 
Sbjct: 102 LS----GSWDGTLRLWDLTTGTTTRR 123

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFST-STGLQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
           AFS+D  R +V  S   T+ +++T          E H+  V+ V   P S+    I+S  
Sbjct: 135 AFSSD-NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI-IVS-- 190

Query: 71  WTASLDETIKYWDFSTPELLKT 92
                D+ +K W+ +  +L   
Sbjct: 191 --CGWDKLVKVWNLANCKLKTN 210

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
             S+D +  L  +   T+ ++  +TG       GHT  V +V     +    +I+S    
Sbjct: 93  VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN---RQIVS---- 145

Query: 73  ASLDETIKYWDFSTPELL 90
            S D+TIK W+       
Sbjct: 146 GSRDKTIKLWNTLGVCKY 163

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 9/82 (10%), Positives = 24/82 (29%), Gaps = 16/82 (19%)

Query: 14  AFSNDVKRLLVCTSNTVSIFSTSTGLQI---------SSLEGHTAPVTTVIVVPASTPAT 64
            FS +   L   T  ++ I+     + +         +S +      T++          
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG---Q 319

Query: 65  KILSYCWTASLDETIKYWDFST 86
            + +       D  ++ W  + 
Sbjct: 320 TLFA----GYTDNLVRVWQVTI 337

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 3   RGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAST 61
               +Y+S+  +F+N   ++L  +   T +++   +G  + S  GH A V  + + P S 
Sbjct: 151 AMHTNYLSAC-SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP-SE 208

Query: 62  PATKILSYCWTASLDETIKYWDFSTPELLKTID 94
                +S       D+    WD  + + ++  +
Sbjct: 209 TGNTFVS----GGCDKKAMVWDMRSGQCVQAFE 237

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 16/87 (18%)

Query: 14  AFSNDVKRLLVCTS--NTVSIF------STSTGLQISSLEGHTAPVTTVIVVPASTPATK 65
           A++      + C    N  S++      + +   +  S+  HT  ++      +     +
Sbjct: 113 AYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD---MQ 168

Query: 66  ILSYCWTASLDETIKYWDFSTPELLKT 92
           IL+    AS D T   WD  + +LL++
Sbjct: 169 ILT----ASGDGTCALWDVESGQLLQS 191

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 10/87 (11%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            +  D KR +V +S    V ++ + T  +  ++      V      P+      I     
Sbjct: 71  DWCKD-KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG---CAIAC--- 123

Query: 72  TASLDETIKYWDFSTPELLKTIDVKFP 98
              LD     +  +  +       K  
Sbjct: 124 -GGLDNKCSVYPLTFDKNENMAAKKKS 149

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 10/82 (12%)

Query: 14  AFSNDVK-RLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
             +        V         ++   +G  + + E H + V +V       P+    +  
Sbjct: 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV----RYYPSGDAFA-- 256

Query: 71  WTASLDETIKYWDFSTPELLKT 92
            + S D T + +D      +  
Sbjct: 257 -SGSDDATCRLYDLRADREVAI 277

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            FS    RLL       T++++    G ++S L GH   V+T+ V P     T   S   
Sbjct: 291 DFSLS-GRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG---TAFCS--- 343

Query: 72  TASLDETIKYW 82
             S D T++ W
Sbjct: 344 -GSWDHTLRVW 353

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 7/68 (10%)

Query: 26  TSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS 85
            +  V            +L+GH   V  +          +I+S    +S D  +  WD  
Sbjct: 42  VAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDK---RRIVS----SSQDGKVIVWDSF 94

Query: 86  TPELLKTI 93
           T      +
Sbjct: 95  TTNKEHAV 102

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 7/82 (8%), Positives = 20/82 (24%), Gaps = 10/82 (12%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGH--TAPVTTVIVVPASTPATKILSYC 70
            +          +   T  ++      +++           ++V    +      + +  
Sbjct: 247 RYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR---LLFA-- 301

Query: 71  WTASLDETIKYWDFSTPELLKT 92
                D TI  WD      +  
Sbjct: 302 --GYNDYTINVWDVLKGSRVSI 321

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 48.3 bits (115), Expect = 5e-08
 Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 8/100 (8%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            F ++    +   +    +            +L  + A +    +        K+++   
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGD--DKLIA--- 117

Query: 72  TASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111
            AS D  I+  D                 +     K F +
Sbjct: 118 -ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM 156

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 10/92 (10%), Positives = 23/92 (25%), Gaps = 20/92 (21%)

Query: 14  AFSNDVK-RLLVCTS--NTVSIFSTSTGLQIS-------------SLEGHTAPVTTVIVV 57
            F+       L C      + ++       +                  H      +   
Sbjct: 117 KFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWC 176

Query: 58  PASTPATKILSYCWTASLDETIKYWDFSTPEL 89
           P+     K+      ++L++ I Y      +L
Sbjct: 177 PSRFSPEKLAV----SALEQAIIYQRGKDGKL 204

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 8/86 (9%)

Query: 14  AFSNDVKR---LLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILS 68
           +++  + R   L+        + IF  +  L    L    +   + +    S        
Sbjct: 221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSP--LASEESLTNSNMFDN-SADVDMDAQ 277

Query: 69  YCWTASLDETIKYWDFSTPELLKTID 94
               ++ +E  +       ELL   D
Sbjct: 278 GRSDSNTEEKAELQSNLQVELLSEHD 303

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 13  PAFSNDVKRLL-VCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
                D +      T     + S      +S  + H   V +V    +      ILS   
Sbjct: 270 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV----SWNLTGTILS--- 322

Query: 72  TASLDETIKYWDFSTPELLKTIDV 95
           +A  D  ++ W  +     K + V
Sbjct: 323 SAGDDGKVRLWKATYSNEFKCMSV 346

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 17/107 (15%)

Query: 14  AFSNDVK-RLLVCTS--NTVSIFSTSTGLQISS---------LEGHTAPVTTVIVVPAST 61
            +++    R++   S   TV ++      +  S         L      + +V   P + 
Sbjct: 64  DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AH 122

Query: 62  PATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKG 108
              K+         D  ++ +D   P  L++  +   +  +      
Sbjct: 123 LGLKLAC----LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 9/81 (11%), Positives = 27/81 (33%), Gaps = 9/81 (11%)

Query: 14  AFSNDVK--RLLVCTS--NTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKIL 67
           ++         L  ++    +       G     + L GH + + ++   P+     +++
Sbjct: 174 SWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI 233

Query: 68  SYCWTASLDETIKYWDFSTPE 88
           +   T   D  I+ +  +   
Sbjct: 234 A---TGCKDGRIRIFKITEKL 251

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 48.0 bits (115), Expect = 5e-08
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 15  FSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHT-----APVTTVIVVPASTPATKIL 67
            S +   L+  T   N V+++   +  +I  L+ +          T      S  +  +L
Sbjct: 29  HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88

Query: 68  SYCWTASLDETIKYWDFSTPELLKT 92
           +    A     I+  +  T + +K 
Sbjct: 89  A---VAGSRGIIRIINPITMQCIKH 110

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 11/84 (13%)

Query: 14  AFSNDVKR---LLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILS 68
           A++ D      LL        + I +  T   I    GH   +  +   P       +LS
Sbjct: 76  AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRD--PNLLLS 133

Query: 69  YCWTASLDETIKYWDFSTPELLKT 92
                S D  ++ W+  T  L+  
Sbjct: 134 ----VSKDHALRLWNIQTDTLVAI 153

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 14/87 (16%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQIS---SLEGHTAPVTTVIVVPASTP-ATKIL 67
            F      LL+  S  + + +++  T   ++    +EGH   V +            KI+
Sbjct: 122 KFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA----DYDLLGEKIM 177

Query: 68  SYCWTASLDETIKYWDFSTPELLKTID 94
           S      +D ++K W  ++  ++  I 
Sbjct: 178 S----CGMDHSLKLWRINSKRMMNAIK 200

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 4/58 (6%)

Query: 37 TGLQISSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
          +   ++SL E H  P+  V     S     ++           +  ++  +   ++ +
Sbjct: 6  SFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVF---ATVGSNRVTLYECHSQGEIRLL 60

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 14  AFSND-VKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
            FS + ++  +V  S   TV +++ S     S+L GHT  V+TV V P         S C
Sbjct: 524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG-------SLC 576

Query: 71  WTASLDETIKYWDFSTPELLKTIDVKFPIFS 101
            +   D  +  WD +  + L +++    I +
Sbjct: 577 ASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 13/94 (13%)

Query: 5   GRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPAT 64
             S + +   FS +   L   T + + I+   +   +  L+                   
Sbjct: 601 ANSVIHAL-CFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK 659

Query: 65  KILSYCW------------TASLDETIKYWDFST 86
           + + YC             +   D  I+ W    
Sbjct: 660 RKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 1   MIRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSI-----FSTSTGLQISSLEGHTAPVTT 53
            +R     V++  A   D   ++V  S   ++ +        + G+    L GH+  V  
Sbjct: 377 TMRAHTDMVTAI-ATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435

Query: 54  VIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKT 92
           V++          LS     S D  ++ WD +     + 
Sbjct: 436 VVLSSDG---QFALS----GSWDGELRLWDLAAGVSTRR 467

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
             S+D +  L  +    + ++  + G+      GHT  V +V     +    +I+S    
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN---RQIVS---- 489

Query: 73  ASLDETIKYWDFSTPELLKTIDVKF 97
           AS D TIK W+ +  E   TI    
Sbjct: 490 ASRDRTIKLWN-TLGECKYTISEGG 513

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQ---ISSLEGHTAPVTTVIVVPASTPATKILS 68
           AFS D  R +V  S   T+ +++T    +       EGH   V+ V   P +   T I+S
Sbjct: 479 AFSLD-NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT-IVS 536

Query: 69  YCWTASLDETIKYWDFSTPELLKT 92
               AS D+T+K W+ S  +L  T
Sbjct: 537 ----ASWDKTVKVWNLSNCKLRST 556

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 11/91 (12%)

Query: 3   RGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAST 61
           RG  + V +      +   ++       + ++ +     +  L GH   V  +       
Sbjct: 118 RGHMTSVIT--CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 175

Query: 62  PATKILSYCWTASLDETIKYWDFSTPELLKT 92
                     + S D T++ WD         
Sbjct: 176 LV--------SGSTDRTVRVWDIKKGCCTHV 198

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            +++    +LV  S   TV ++    G      EGH + V  + +V        I++   
Sbjct: 169 KYAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE-YKNIKYIVT--- 222

Query: 72  TASLDETIKYWDFSTPELLKT 92
             S D T+  W       +  
Sbjct: 223 -GSRDNTLHVWKLPKESSVPD 242

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 5   GRSYVSSPPAFSNDVKRLLVCTS-NTVSI-FSTSTGLQISSLEGHTAPVTTVIVVPASTP 62
            +     P     D  RL    +   +   ++     Q ++L GH   V T         
Sbjct: 76  LKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITC----LQFE 131

Query: 63  ATKILSYCWTASLDETIKYWDFSTPELLKT 92
              +++     + D+ I+ +D    + L  
Sbjct: 132 DNYVIT----GADDKMIRVYDSINKKFLLQ 157

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 28  NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87
           NT+ ++  +    +  L GHT  + + I              C +AS+D TI+ WD    
Sbjct: 290 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-------RCISASMDTTIRIWDLENG 342

Query: 88  ELLKT 92
           EL+ T
Sbjct: 343 ELMYT 347

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 12/81 (14%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            + ++ ++  +  S   T+ I+    G  + +L+GHTA V  + +         ++S   
Sbjct: 317 IYDHE-RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-----KFLVS--- 367

Query: 72  TASLDETIKYWDFSTPELLKT 92
            A+ D +I+ WD +      +
Sbjct: 368 -AAADGSIRGWDANDYSRKFS 387

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 28  NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87
             V          +  L GH A V TV     S     ++S     S D T+  WD +  
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTV-----SGHGNIVVS----GSYDNTLIVWDVAQM 300

Query: 88  ELLKT 92
           + L  
Sbjct: 301 KCLYI 305

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 11/90 (12%)

Query: 14  AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATK---ILSYC 70
            FSND + L    + T  ++  S G  ++ L   +A       +  S+  +    I S C
Sbjct: 71  KFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130

Query: 71  W--------TASLDETIKYWDFSTPELLKT 92
           +        T + D  I+ WD    +++  
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMI 160

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 11/92 (11%)

Query: 3   RGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
                Y+ S   FS D K L    +    + I+       +  L+GH   + ++   P+ 
Sbjct: 120 PSSDLYIRSV-CFSPDGKFL-ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 177

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPELLKT 92
               K++S     S D T++ WD  T +   T
Sbjct: 178 ---DKLVS----GSGDRTVRIWDLRTGQCSLT 202

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPA---TKILS 68
           A + + + + +  S    V  +   +G  +  L+GH   V +V V   S+         +
Sbjct: 317 ATTQNDEYI-LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375

Query: 69  YCWTASLDETIKYWDFST 86
                S D   + W +  
Sbjct: 376 ----GSGDCKARIWKYKK 389

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 14/92 (15%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPA--TKILSY 69
            +       LV  S   TV I+   TG    +L      VTTV    A +P     I + 
Sbjct: 172 DYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTV----AVSPGDGKYIAA- 224

Query: 70  CWTASLDETIKYWDFSTPELLKTIDVKFPIFS 101
               SLD  ++ WD  T  L++ +D +    +
Sbjct: 225 ---GSLDRAVRVWDSETGFLVERLDSENESGT 253

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 22/93 (23%)

Query: 14  AFSNDVKRL-------------LVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
            F+ D + +             L   +N     + ++G    +  GH   V +V    A+
Sbjct: 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV----AT 318

Query: 61  TP-ATKILSYCWTASLDETIKYWDFSTPELLKT 92
           T     ILS     S D  + +WD  +   L  
Sbjct: 319 TQNDEYILS----GSKDRGVLFWDKKSGNPLLM 347

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 7/55 (12%)

Query: 41 ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDV 95
           +    H+ P+            ++ +     A   +T  Y+    P L + IDV
Sbjct: 8  YNQRANHSKPIPPF----LLDLDSQSVP---DALKKQTNDYYILYNPALPREIDV 55

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 13/88 (14%)

Query: 14  AFSND--VKRLLVCTS--NTVSIFSTSTGLQISS-LEGHTAPVTTVIVVPASTPATKILS 68
               D    + ++ +     + I        +   L GH   V+++           +LS
Sbjct: 202 HLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSI----CCGKDYLLLS 257

Query: 69  YCWTASLDETIKYWDFSTPELLKTIDVK 96
               A  D+ I  WD+ T + L T D  
Sbjct: 258 ----AGGDDKIFAWDWKTGKNLSTFDYN 281

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 14  AFSNDVKRLLVCTSNTVSIFSTS------TGLQISSLEGHTAPVTTVIVVPASTPATKIL 67
           + + D   +++       ++S               + GH + +T V ++  S     I+
Sbjct: 156 SIAEDDTTVIIA-DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII 214

Query: 68  SYCWTASLDETIKYWDFSTPELLKTI 93
           +    +  DE IK   +    ++   
Sbjct: 215 T----SDRDEHIKISHYPQCFIVDKW 236

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 14/85 (16%)

Query: 14  AFSNDVKRLLVCTS----NTVSIFSTSTG--LQISSLEGHTAPVTTVIVVPASTPATKIL 67
            +S   K + + T     N +SI+S S+    +   +  H   V    + P       + 
Sbjct: 310 IWSPHSKEI-MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGR---ILS 365

Query: 68  SYCWTASLDETIKYWDFSTPELLKT 92
           +    A+ DE +K+W     + +K 
Sbjct: 366 T----AASDENLKFWRVYDGDHVKR 386

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 23/91 (25%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTV--------IVVPASTPA 63
           A+ +D    L      N V I+   + +   +   H A V  V        ++       
Sbjct: 224 AWRSD-GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG--- 279

Query: 64  TKILSYCWTASLDETIKYWDFSTPELLKTID 94
                     ++D+ I +W+ +T   + T+D
Sbjct: 280 ---------GTMDKQIHFWNAATGARVNTVD 301

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 11/87 (12%)

Query: 3   RGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAST 61
               +YV+S   +S+D   L V      V I+   +  ++ ++ GH A V  +      +
Sbjct: 131 TDESTYVASV-KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL------S 183

Query: 62  PATKILSYCWTASLDETIKYWDFSTPE 88
               +LS   + S    I + D     
Sbjct: 184 WNRHVLS---SGSRSGAIHHHDVRIAN 207

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 14  AFSNDVKRLLVCTS----NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSY 69
           A+      LL          +  ++ +TG ++++++  +  VT++I    S  + +I+S 
Sbjct: 266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIW---SPHSKEIMST 321

Query: 70  CWTASLDETIKYWDFSTPELLKTIDVK 96
                 D  +  W +S+  L K +D+ 
Sbjct: 322 H--GFPDNNLSIWSYSSSGLTKQVDIP 346

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 20/97 (20%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTV-----I 55
           I               D ++++     NT+ I+  +T      L GHT  V  +     +
Sbjct: 126 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 185

Query: 56  VVPASTPATKILSYCWTASLDETIKYWDFSTPELLKT 92
           ++              T S D T++ WD +T E+L T
Sbjct: 186 II--------------TGSSDSTVRVWDVNTGEMLNT 208

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 9/59 (15%)

Query: 28  NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86
           NT+ ++    G  +  LEGH   V  +          +I+S     + D  IK WD   
Sbjct: 316 NTIRLWDIECGACLRVLEGHEELVRCIRFDN-----KRIVS----GAYDGKIKVWDLVA 365

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 28  NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87
            T+ +++TST   + +L GH   +  +                 + S D TI+ WD    
Sbjct: 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---------RLVVSGSSDNTIRLWDIECG 326

Query: 88  ELLKT 92
             L+ 
Sbjct: 327 ACLRV 331

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 19/73 (26%)

Query: 28  NTVSIFSTSTGLQISSLEGHTAPVTTV-----IVVPASTPATKILSYCWTASLDETIKYW 82
           +TV ++  +TG  +++L  H   V  +     ++V              T S D +I  W
Sbjct: 193 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMV--------------TCSKDRSIAVW 238

Query: 83  DFSTPELLKTIDV 95
           D ++P  +    V
Sbjct: 239 DMASPTDITLRRV 251

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 24/77 (31%)

Query: 28  NTVSIFSTSTGLQISS---------LEGHTAPVTTVIVVPASTPA---TKILSYCWTASL 75
             + ++     L   +         L  H+  V  +             +I+S    +S 
Sbjct: 356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--------QFDEFQIVS----SSH 403

Query: 76  DETIKYWDFSTPELLKT 92
           D+TI  WDF      + 
Sbjct: 404 DDTILIWDFLNDPAAQA 420

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 22/73 (30%)

Query: 28  NTVSIFSTSTGLQISS---LEGHTAPVTTV-----IVVPASTPATKILSYCWTASLDETI 79
            +++++  ++   I+    L GH A V  V      +V              +AS D TI
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV--------------SASGDRTI 278

Query: 80  KYWDFSTPELLKT 92
           K W+ ST E ++T
Sbjct: 279 KVWNTSTCEFVRT 291

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 4   GGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEG--HTAPVTTVIVVPA 59
           G   Y     AF N+ K LLV  +N   V IF   T  ++  +E       V+++ +   
Sbjct: 166 GKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE 225

Query: 60  STPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
                 ++      +    I  WD     L+++ 
Sbjct: 226 CC---VLIL----GTTRGIIDIWDIRFNVLIRSW 252

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 8/105 (7%), Positives = 26/105 (24%), Gaps = 19/105 (18%)

Query: 8   YVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVP-------- 58
           +V     +  +   ++  +S   ++I++   G    +        +    +P        
Sbjct: 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL 321

Query: 59  -ASTPATKILSYCW---------TASLDETIKYWDFSTPELLKTI 93
                 +                T     +I  +  +     K +
Sbjct: 322 NFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAV 366

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 11  SPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILS 68
            P   ++D    ++       V  ++ +     +   GH + + T+   P         +
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG-------T 209

Query: 69  YCWTASLDETIKYWDFSTPELLKTID 94
              +A  D  I  W+ +  + + T+ 
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLS 235

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 14/86 (16%)

Query: 14  AFSNDVKRLLVCTS--NTVSI-----FSTSTGLQISSLEGHTAPVTTVIVVPASTPATKI 66
           A S     LL+  S   T+            G+ + S +GH+  V    +          
Sbjct: 24  ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG---AYA 80

Query: 67  LSYCWTASLDETIKYWDFSTPELLKT 92
           LS    AS D+T++ WD +T E  + 
Sbjct: 81  LS----ASWDKTLRLWDVATGETYQR 102

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
             + D    L  +   T+ ++  +TG       GH + V +V +   +   + I+S    
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA---SMIIS---- 124

Query: 73  ASLDETIKYWDFSTPELLKTI 93
            S D+TIK W     + L T+
Sbjct: 125 GSRDKTIKVWTIKG-QCLATL 144

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPA---TKILS 68
                   +++  S   T+ +++   G  +++L GH   V+ V VVP          I+S
Sbjct: 114 DIDKK-ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171

Query: 69  YCWTASLDETIKYWDFSTPELLKT 92
               A  D+ +K W+ +  ++   
Sbjct: 172 ----AGNDKMVKAWNLNQFQIEAD 191

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 4   GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSL--------EGHTAPVTTVI 55
             +  V S  AFS +   L   T+  + +FS      +  L        +       ++ 
Sbjct: 235 SAQDEVFSL-AFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL- 292

Query: 56  VVPASTPATKILSYCWTASLDETIKYWDFST 86
              A +   + L   +    D  I+ W   T
Sbjct: 293 ---AWSADGQTL---FAGYTDNVIRVWQVMT 317

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 14/86 (16%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSL---EGHTAPVTTVIVVPASTP-ATKIL 67
           A +      L   S   TV I+        +S      H  PV         +P   ++L
Sbjct: 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAA----CFSPDGARLL 312

Query: 68  SYCWTASLDETIKYWDFSTPELLKTI 93
           +          I+ +  S  +    +
Sbjct: 313 T----TDQKSEIRVYSASQWDCPLGL 334

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 42.4 bits (100), Expect = 6e-06
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 10/83 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSI--FSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSY 69
           A+       +   S    + +  F            G    +T +   P +T   +  + 
Sbjct: 126 AWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNT--NQFYA- 182

Query: 70  CWTASLDETIKYWDFSTPELLKT 92
              +S++ T +  DF    L   
Sbjct: 183 ---SSMEGTTRLQDFKGNILRVF 202

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 42.4 bits (100), Expect = 6e-06
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 20/96 (20%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHT--------------APVTTVIVV 57
            FS D  RL + T   + + ++S S       L  H                P   +IVV
Sbjct: 303 CFSPDGARL-LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV 361

Query: 58  PASTPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
               P     S   T     TI  +D ++ +++  +
Sbjct: 362 -GRYPDPNFKS--CTPYELRTIDVFDGNSGKMMCQL 394

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
             S   + ++   +   V + +   G ++ +L  H   VT V + P        L+   T
Sbjct: 216 DVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCC---DWFLA---T 268

Query: 73  ASLDETIKYWDFSTPELLKTI 93
           AS+D+T+K WD        + 
Sbjct: 269 ASVDQTVKIWDLRQVRGKASF 289

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 10/81 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPASTPATKILSYC 70
               D            T+ +F  ++G  +  L +  ++ ++++       P    L+  
Sbjct: 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLN---EFNPMGDTLA-- 416

Query: 71  WTASLDETIKYWDFSTPELLK 91
            +A     I  W        K
Sbjct: 417 -SAM-GYHILIWSQQEARTRK 435

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 16/96 (16%)

Query: 4   GGRSYVSSPP------AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVV 57
             RS V +        A    V++ L        + +  +   +          T++   
Sbjct: 73  PCRSIVRTLHQHKLGRASWPSVQQGL----QQSFLHTLDSYRILQKAAPFDRRATSLAWH 128

Query: 58  PASTPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
           P        ++     S    I  W+F   +    I
Sbjct: 129 PTHP---STVA---VGSKGGDIMLWNFGIKDKPTFI 158

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 44.9 bits (106), Expect = 7e-07
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 11/84 (13%)

Query: 14  AFSNDVK-RLLVCTS--NTVSIFSTSTG--LQISSLEGHTAPVTTVIVVPASTPATKILS 68
            ++      LL+  S    VS+             ++ H   V +    PA+       +
Sbjct: 106 QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165

Query: 69  YCW------TASLDETIKYWDFST 86
                    T   D  +K W +++
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNS 189

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 42.6 bits (100), Expect = 6e-06
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 14 AFSNDVKRLLVCTS-NTVSIF--STSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
                KRL  C+S  T+ IF     T   I +L GH  PV  V    A      IL+  
Sbjct: 16 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW--AHPKFGTILA-- 71

Query: 71 WTASLDETIKYWDFSTPELLK 91
           + S D  +  W        +
Sbjct: 72 -SCSYDGKVLIWKEENGRWSQ 91

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 10  SSPPAFSNDVKRLLVCTS-NTVSIF----STSTGLQISSLEGHTAPVTTVIVVPASTPAT 64
                 + + ++ +   + N V I+       T +  S+LEGH+  V  V   P     +
Sbjct: 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

Query: 65  KILSYCWTASLDETIKYWDFSTPE 88
            + S     S D T   W     +
Sbjct: 221 YLAS----VSQDRTCIIWTQDNEQ 240

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 8/82 (9%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTG--LQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
           A       L  C+    V I+    G   QI+    H+A V +V   P       +L   
Sbjct: 62  AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLV-- 118

Query: 71  WTASLDETIKYWDFSTPELLKT 92
             AS D  +   +F        
Sbjct: 119 --ASSDGKVSVVEFKENGTTSP 138

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 44.9 bits (107), Expect = 8e-07
 Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 7/81 (8%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            +      +   +S   T+ ++ T+T  Q + +      V +  + P ST    +     
Sbjct: 106 QWYPHDTGMFTSSSFDKTLKVWDTNTL-QTADVFNFEETVYSHHMSPVSTKHCLVAV--- 161

Query: 72  TASLDETIKYWDFSTPELLKT 92
             +    ++  D  +      
Sbjct: 162 -GTRGPKVQLCDLKSGSCSHI 181

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 11/91 (12%), Positives = 17/91 (18%), Gaps = 10/91 (10%)

Query: 20  KRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPA--TKILSYCWTASLDE 77
              L    +T  +              H   + T+       P     +LS       D 
Sbjct: 15  PLRLRRAESTRRVLGLELNKDRDVERIHGGGINTL----DIEPVEGRYMLS----GGSDG 66

Query: 78  TIKYWDFSTPELLKTIDVKFPIFSMVRGKKG 108
            I  +D            K            
Sbjct: 67  VIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 11/93 (11%)

Query: 2   IRGGRSYVSSPPAFSNDVKR--LLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVV 57
           +      V S    S    +  L+   +    V +    +G     L+GH   +  V   
Sbjct: 137 VFNFEETVYSH-HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS 195

Query: 58  PASTPATKILSYCWTASLDETIKYWDFSTPELL 90
           P       IL+   TAS D  +K WD       
Sbjct: 196 PRY---DYILA---TASADSRVKLWDVRRASGC 222

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 7/82 (8%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTA--PVTTVIVVPASTPATKILSYC 70
            F++D   LL   + N + ++++S G       G         +    +   +++ +   
Sbjct: 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF-- 309

Query: 71  WTASLDETIKYWDFSTPELLKT 92
                  TI  +   + E +  
Sbjct: 310 --VPYGSTIAVYTVYSGEQITM 329

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 28  NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87
           +T+++++  +G QI+ L+GH   V             + L    + S D  I  W  S  
Sbjct: 314 STIAVYTVYSGEQITMLKGHYKTVDCC----VFQSNFQELY---SGSRDCNILAWVPSLY 366

Query: 88  ELLK 91
           E + 
Sbjct: 367 EPVP 370

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 27/98 (27%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQI----------------SSLEGHTAPVTTVI 55
           ++S     +L   S  + V ++                        S+   H   V  + 
Sbjct: 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL- 251

Query: 56  VVPASTP-ATKILSYCWTASLDETIKYWDFSTPELLKT 92
                T     +L+       D  ++ W+ S  E    
Sbjct: 252 ---CFTSDGLHLLT----VGTDNRMRLWNSSNGENTLV 282

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 18/90 (20%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISS---------LEGHTAPVTTVIVVPASTP 62
           A+       L      + + +F                    + H+  V  V   P    
Sbjct: 259 AWCQL-TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP- 316

Query: 63  ATKILSYCWTASLDETIKYWDFSTPELLKT 92
              +L+   + S D  + +W +  PE L  
Sbjct: 317 --GLLA---SCSDDGEVAFWKYQRPEGLHH 341

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 12/86 (13%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSY 69
           A+S     L    S   T  I+  +      +++LEGH   V +V    A  P+  +L+ 
Sbjct: 68  AWSPCGNYL-ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSV----AWAPSGNLLA- 121

Query: 70  CWTASLDETIKYWDFSTPELLKTIDV 95
             T S D+++  W+    +  + + V
Sbjct: 122 --TCSRDKSVWVWEVDEEDEYECVSV 145

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 13/87 (14%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISS---LEGHTAPVTTVIVVPASTPATKILSY 69
           A++     L  C     + I+ T     I      EGH   V  V    A +P    L+ 
Sbjct: 23  AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV----AWSPCGNYLA- 77

Query: 70  CWTASLDETIKYWDFST--PELLKTID 94
             +AS D T   W  +    E + T++
Sbjct: 78  --SASFDATTCIWKKNQDDFECVTTLE 102

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 5/74 (6%)

Query: 14  AFSNDVKRLLVCTSN-TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
           +FS D+    +   + T  +      L  S ++ H+           ++    +      
Sbjct: 88  SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW----GASNDRLLSHRLVA 143

Query: 73  ASLDETIKYWDFST 86
             +  T   W F  
Sbjct: 144 TDVKGTTYIWKFHP 157

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 24/98 (24%)

Query: 14  AFSNDVKRLLVC----TSNTVSIFSTSTGLQISSLE-------------GHTAPVTTVIV 56
            FS     L +     +   ++++ T  G +I SL               H++ V ++  
Sbjct: 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL-- 297

Query: 57  VPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID 94
             +   + + L    +A  D  +++WD  T E + T++
Sbjct: 298 --SFNDSGETLC---SAGWDGKLRFWDVKTKERITTLN 330

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 20/106 (18%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQIS------SLEGHTAPVTTVIVVPASTPATK 65
             S     L+       TV I   ST   +       S+  ++  + +V      +P   
Sbjct: 193 DISER--GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV----KFSPQGS 246

Query: 66  ILSYCWTASLDET---IKYWDFSTPELLKTIDVKFPIFSMVRGKKG 108
           +L+    A    +   I  ++    E + ++ V         G+  
Sbjct: 247 LLA---IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 289

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 11/84 (13%)

Query: 14  AFSNDVK-RLLVCTS--NTVSIFSTSTG--LQISSLEGHTAPVTTVIVVPASTPATKILS 68
            ++      +L+  S    VS+             ++ H   V +    PA+       +
Sbjct: 106 QWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165

Query: 69  YCW------TASLDETIKYWDFST 86
                    T   D  +K W +++
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNS 189

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 14 AFSNDVKRLLVCTS-NTVSIF--STSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
                KR+  C+S  T+ IF     T   I +L GH  PV  V    A      IL+  
Sbjct: 16 VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW--AHPKFGTILA-- 71

Query: 71 WTASLDETIKYWDFSTPELLK 91
           + S D  +  W        +
Sbjct: 72 -SCSYDGKVMIWKEENGRWSQ 91

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 10  SSPPAFSNDVKRLLVCTS-NTVSIF----STSTGLQISSLEGHTAPVTTVIVVPASTPAT 64
                 + + ++ +   + N V I+       T +  S+LEGH+  V  V   P     +
Sbjct: 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

Query: 65  KILSYCWTASLDETIKYWDFSTPE 88
            + S     S D T   W     +
Sbjct: 221 YMAS----VSQDRTCIIWTQDNEQ 240

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 7/67 (10%)

Query: 28  NTVSIFSTSTG--LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS 85
             V I+    G   QI+    H+A V +V   P       +L     AS D  +   +F 
Sbjct: 77  GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLV----ASSDGKVSVVEFK 131

Query: 86  TPELLKT 92
                  
Sbjct: 132 ENGTTSP 138

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 11/84 (13%)

Query: 14  AFSNDVK-RLLVCTS--NTVSIFSTSTG--LQISSLEGHTAPVTTVIVVPASTPATKILS 68
            ++      LL+  S    VS+             ++ H   V +    PA+       +
Sbjct: 108 QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 167

Query: 69  YCW------TASLDETIKYWDFST 86
                    T   D  +K W +++
Sbjct: 168 GTKESRKFVTGGADNLVKIWKYNS 191

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 10  SSPPAFSNDVKRLLVCTS-NTVSIF----STSTGLQISSLEGHTAPVTTVIVVPASTPAT 64
                 + + ++ +   + N V I+       T +  S+LEGH+  V  V   P     +
Sbjct: 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222

Query: 65  KILSYCWTASLDETIKYWDFSTPE 88
            + S     S D T   W     +
Sbjct: 223 YLAS----VSQDRTCIIWTQDNEQ 242

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 14 AFSNDVKRLLVCTS-NTVSIF--STSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
                KRL  C+S  T+ IF     T   I +L GH  PV  V         T + S  
Sbjct: 18 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILAS-- 74

Query: 71 WTASLDETIKYWDFSTPELLK 91
             S D  +  W        +
Sbjct: 75 --CSYDGKVLIWKEENGRWSQ 93

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 14  AFSNDVK-RLLVCTS--NTVSIFSTSTG--LQISSLEGHTAPVTTVIVVPASTPATKILS 68
            +++     +L   S    V I+    G   QI+    H+A V +V   P       +L 
Sbjct: 62  DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLV 120

Query: 69  YCWTASLDETIKYWDFSTPELLKT 92
               AS D  +   +F        
Sbjct: 121 ----ASSDGKVSVVEFKENGTTSP 140

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 16/89 (17%)

Query: 14  AFSNDVK-RLLVCTS--NTVSIFSTSTGLQISS---LEGHTAPVTTVIVVPASTPATKIL 67
            ++      +L C S    +S+ + +   Q         HT     V   PA  P + I 
Sbjct: 110 CWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 169

Query: 68  SYCW----------TASLDETIKYWDFST 86
                         +   D  IK W    
Sbjct: 170 HPSGQKPNYIKRFASGGCDNLIKLWKEEE 198

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 21/82 (25%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 14 AFSNDVKRLLVCTS-NTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSYC 70
                 RL  C+S  +V IF    G Q  I+ L GH  PV  V           + S  
Sbjct: 20 QMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH-PMYGNILAS-- 76

Query: 71 WTASLDETIKYWDFSTPELLKT 92
             S D  +  W        K+
Sbjct: 77 --CSYDRKVIIWREENGTWEKS 96

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 7/88 (7%)

Query: 5   GRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQ---ISSLEGHTAPVTTVIVVPAS 60
           G           N +KR       N + ++      Q      LE H+  V  V   P+ 
Sbjct: 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI 224

Query: 61  TPATKILSYCWTASLDETIKYWDFSTPE 88
              T  ++   + S D  +  W      
Sbjct: 225 GLPTSTIA---SCSQDGRVFIWTCDDAS 249

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
             S   + L    S   + +       +I   + H A VT     P             T
Sbjct: 170 DVSVSRQMLATGDSTGRLLLLGLDGH-EIFKEKLHKAKVTHAEFNPRCD------WLMAT 222

Query: 73  ASLDETIKYWDFSTPELLKTI 93
           +S+D T+K WD    +   + 
Sbjct: 223 SSVDATVKLWDLRNIKDKNSY 243

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 22/95 (23%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHT--------------APVTTVIVV 57
            F+      L+ T   N + ++S+    +   +  H                P+  +IV 
Sbjct: 257 YFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVA 316

Query: 58  PASTPATKILSYCWTASLDETIKYWDFSTPELLKT 92
               P  ++L      +   TI  +D ++  L+  
Sbjct: 317 -GRYPDDQLL-----LNDKRTIDIYDANSGGLVHQ 345

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 8/77 (10%), Positives = 21/77 (27%), Gaps = 10/77 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSY 69
            +       +   S    + ++      +       G    +T +     +T   ++   
Sbjct: 80  EWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT--NQLFV- 136

Query: 70  CWTASLDETIKYWDFST 86
              +S+       DFS 
Sbjct: 137 ---SSIRGATTLRDFSG 150

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 11/85 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSL---EGHTAPVTTVIVVPASTPATKILS 68
            F+     L+  +S   TV ++        +S      H  PV      P    +TK+L+
Sbjct: 211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD--STKLLT 268

Query: 69  YCWTASLDETIKYWDFSTPELLKTI 93
                     I+ +          I
Sbjct: 269 ----TDQRNEIRVYSSYDWSKPDQI 289

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 9/83 (10%), Positives = 26/83 (31%), Gaps = 10/83 (12%)

Query: 14  AFSNDVKRLLVCTS-----NTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKIL 67
            +     + +   +       + ++    G L++        P+       A++   + L
Sbjct: 25  KWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFG-ATSLQQRYL 83

Query: 68  SYCWTASLDETIKYWDFSTPELL 90
           +   T      +  W+   PE+ 
Sbjct: 84  A---TGDFGGNLHIWNLEAPEMP 103

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPA---STPATKIL 67
           A S   +R L        + I++     + + S++GH   +  +  +        A +I+
Sbjct: 75  ATSLQ-QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIV 133

Query: 68  SYCWTASLDETIKYWDFSTPELLKTI 93
           +     S D T+K WD    +     
Sbjct: 134 T----GSRDGTVKVWDPRQKDDPVAN 155

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 15/92 (16%)

Query: 14  AFSND--VKRLLVCTS--NTVSIFSTST-----GLQISSLEGHTAPVTTVIVVPASTPAT 64
            F         LV TS      +F   T     G    S + H + V  V  +P +    
Sbjct: 216 EFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR--- 272

Query: 65  KILSYCWTASLDETIKYWDFSTPELLKTIDVK 96
           ++     TA     +  W +  P      D +
Sbjct: 273 ELFL---TAGGAGGLHLWKYEYPIQRSKKDSE 301

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 44 LEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKT 92
           +G    V     VP S    K ++    A     I+ ++    +L   
Sbjct: 14 QKGFNYTVFDCKWVPCSA---KFVTMGNFARGTGVIQLYEIQHGDLKLL 59

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
           +F+   + +L   S   TV+++      L++ S E H   +  V   P     T + S  
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP--HNETILAS-- 339

Query: 71  WTASLDETIKYWDFSTPELLKTID 94
             +  D  +  WD S     ++ +
Sbjct: 340 --SGTDRRLHVWDLSKIGEEQSTE 361

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 41.8 bits (99), Expect = 8e-06
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 14 AFSNDVKRLLVCTS-NTVSIFSTSTG--LQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
          A++ D  ++ +C + + V I+  S    +Q+  L+ H   VT V       P +  +   
Sbjct: 15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV----DWAPDSNRIV-- 68

Query: 71 WTASLDETIKYWDFSTPELLKT 92
           T   D     W         T
Sbjct: 69 -TCGTDRNAYVWTLKGRTWKPT 89

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 3   RGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVP 58
                +V     FS +  R+    S  +TV +      + +++L   T P+  V  + 
Sbjct: 199 SSSCGWVHGV-CFSANGSRV-AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 254

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 17/89 (19%)

Query: 14  AFSNDVKRLLVCTSNTVSIFSTS----------TGLQISSLEGHTAPVTTVIVVPASTPA 63
            +S  +K             S                  + + H + V  + + P     
Sbjct: 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNG--- 225

Query: 64  TKILSYCWTASLDETIKYWDFSTPELLKT 92
                Y  T   D+ +  WD       + 
Sbjct: 226 ----KYIATGGKDKKLLIWDILNLTYPQR 250

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 10/97 (10%), Positives = 31/97 (31%), Gaps = 11/97 (11%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
           + S +  + +        + I+               + +  +    A  P  + ++   
Sbjct: 220 SISPN-GKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQI----AFNPKLQWVA--- 271

Query: 72  TASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKG 108
             + D+ +K ++  T        ++    +   G+KG
Sbjct: 272 VGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTP-ATKILSYCW 71
           A S +    +  +   T+ ++   TG       GH + V +V    A +P   +ILS   
Sbjct: 83  ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSV----AFSPDNRQILS--- 135

Query: 72  TASLDETIKYWDFST 86
            A  +  IK W+   
Sbjct: 136 -AGAEREIKLWNILG 149

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSY 69
           AFS D  R ++       + +++     +   +  E H+  V+ V   P    A K+  +
Sbjct: 125 AFSPD-NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPF 183

Query: 70  CW---TASLDETIKYWDFSTPEL 89
                +   D  +K W+ +    
Sbjct: 184 APYFASVGWDGRLKVWNTNFQIR 206

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 14  AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW-- 71
           AF+  ++ + V T   V IF+  T  +         P+T         P     S  W  
Sbjct: 262 AFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ--CTSLAWNA 319

Query: 72  ------TASLDETIKYWDFST 86
                     D  I+ + F T
Sbjct: 320 LGKKLFAGFTDGVIRTFSFET 340

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 34  STSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKT 92
           +   G+   +L GH   V+ + +   +      +S    +S D+T++ WD  T    K 
Sbjct: 62  NGYFGIPHKALTGHNHFVSDLALSQENC---FAIS----SSWDKTLRLWDLRTGTTYKR 113

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 28 NTVSIFSTSTGLQISSLEGHTAPVTTV---IVVPASTPATKILSYCWTASLDETIKYWDF 84
          +++ I     G     LEGH+  VT++        +  +  ++S     S D+T+  W  
Sbjct: 5  SSLDIQVVKRG----ILEGHSDWVTSIVAGFSQKENEDSPVLIS----GSRDKTVMIWKL 56

Query: 85 STPE 88
             E
Sbjct: 57 YEEE 60

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 10/85 (11%)

Query: 14 AFSNDVKRLLVCTS-NTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSYC 70
          AF++     +  T+ N V ++           +   H   VT V       P +  +   
Sbjct: 18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCV----DWAPKSNRIV-- 71

Query: 71 WTASLDETIKYWDFSTPELLKTIDV 95
           T S D     ++       K   V
Sbjct: 72 -TCSQDRNAYVYEKRPDGTWKQTLV 95

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 16/104 (15%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGL-------QISSLEGHTAPVT 52
           + G  + V    A+      ++   S   TV ++    G         + +LEGHT  V 
Sbjct: 77  VCGHTAPVLDI-AWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135

Query: 53  TVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK 96
            V   P    A  +L    +A  D  I  WD  T   + T+   
Sbjct: 136 IVAWHPT---AQNVLL---SAGCDNVILVWDVGTGAAVLTLGPD 173

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 12/97 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            +S D   L+  +     V +     G  ++  +        V          KIL+  +
Sbjct: 183 DWSRD-GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHA--VFVSEGKILTTGF 239

Query: 72  TASLDETIKYWDFSTPELLKTID-------VKFPIFS 101
           +   +  +  WD    E   ++        V  P F 
Sbjct: 240 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFD 276

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 14/100 (14%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS-----NTVSIFSTSTGLQISS--LEGHTAPVTTV 54
             G +  +S    +       +   +      ++ I+             +GH   + ++
Sbjct: 210 NSGIKQQLSVV-EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSL 268

Query: 55  IVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID 94
                      +LS    +  D T+  W+  + E L    
Sbjct: 269 DWCHQD--EHLLLS----SGRDNTVLLWNPESAEQLSQFP 302

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 11/90 (12%), Positives = 33/90 (36%), Gaps = 13/90 (14%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQ----ISSLEGHTAPVTTVIVVPASTPATKIL 67
            +S++  +++       ++ ++ST+        ++    H++ V TV     +     +L
Sbjct: 74  DWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKF---NAKQDNVL 129

Query: 68  SYCWTASLDETIKYWDFSTPELLKTIDVKF 97
           +   +   +  I  WD +      +     
Sbjct: 130 A---SGGNNGEIFIWDMNKCTESPSNYTPL 156

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 8/77 (10%)

Query: 14  AFS-NDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71
            +   D   LL     NTV +++  +  Q+S               P +     + +   
Sbjct: 269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEA---PDLFA--- 322

Query: 72  TASLDETIKYWDFSTPE 88
            AS D  I+        
Sbjct: 323 CASFDNKIEVQTLQNLT 339

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 39.4 bits (91), Expect = 8e-05
 Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 7/82 (8%)

Query: 15  FSNDVKRLLVCTS-NTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWT 72
                 RLL+    N ++I  + T   +  +E      +  +              Y   
Sbjct: 90  SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-----EYFIW 144

Query: 73  ASLDETIKYWDFSTPELLKTID 94
           A    TI +  +          
Sbjct: 145 ADNRGTIGFQSYEDDSQYIVHS 166

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 14  AFSNDVKRLLVCTS--NTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSY 69
            +    + LL  +S  +TV I+         ++ L GH   V +           ++ S 
Sbjct: 160 IWHPS-EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG-VFRLCS- 216

Query: 70  CWTASLDETIKYWDFSTPELLKT 92
               S D T++ W +   +    
Sbjct: 217 ---GSDDSTVRVWKYMGDDEDDQ 236

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 8/89 (8%)

Query: 14  AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA 73
           AF      L + T            +++       + +  +  V           Y    
Sbjct: 24  AFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGI--------YLVVI 75

Query: 74  SLDETIKYWDFSTPELLKTIDVKFPIFSM 102
           +  +T+      + ++L T+ V   I S+
Sbjct: 76  NAKDTVYVLSLYSQKVLTTVFVPGKITSI 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.91
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.9
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.9
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.89
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.88
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.88
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.88
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.87
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.87
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.87
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.87
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.87
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.87
2pm7_B	297	Protein transport protein SEC13, protein transport	99.86
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.86
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.86
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.86
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.85
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.85
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.85
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.85
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.85
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.85
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.85
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.85
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.85
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.85
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.84
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.84
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.84
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.84
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.84
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.84
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.83
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.83
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.83
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.83
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.83
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.83
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.83
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.82
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.82
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.82
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.81
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.81
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.81
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.81
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.81
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.81
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.81
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.81
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.81
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.81
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.81
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.81
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.81
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.81
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.8
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.79
3jro_A	753	Fusion protein of protein transport protein SEC13	99.79
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.79
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.79
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.79
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.79
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.79
2pm7_B	297	Protein transport protein SEC13, protein transport	99.79
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.78
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.78
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.78
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.78
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.78
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.78
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.78
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.78
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.77
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.77
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.77
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.77
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.77
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.77
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.76
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.76
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.76
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.76
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.76
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.76
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.76
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.75
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.75
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.74
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.74
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.74
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.74
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.74
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.74
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.74
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.73
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.73
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.73
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.73
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.73
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.73
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.72
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.72
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.71
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.71
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.71
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.71
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.71
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.7
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.7
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.7
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.69
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.69
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.69
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.69
3jro_A	753	Fusion protein of protein transport protein SEC13	99.68
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.67
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.66
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.65
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.64
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.63
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.61
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.6
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.59
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.59
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.59
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.58
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.56
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.55
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.55
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.48
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.46
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.46
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.46
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.45
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.45
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.45
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.44
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.43
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.42
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.4
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.39
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.38
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.37
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.36
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.36
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.35
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.33
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.32
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.31
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.29
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.28
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.28
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.28
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.28
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.27
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.26
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.24
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.22
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.19
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.18
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.18
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.18
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.18
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.18
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.18
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.15
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.11
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.1
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.09
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.07
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.02
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.96
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.95
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.92
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.9
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.89
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.88
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.88
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.87
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.86
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.86
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.74
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.71
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.7
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.7
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.66
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.63
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.62
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.61
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.54
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.5
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.47
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.46
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.45
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.43
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.42
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.37
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.37
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.33
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.31
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.3
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.29
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.27
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.23
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.21
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.2
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.19
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.18
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.18
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.17
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.13
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.13
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.12
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.11
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.08
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.06
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.02
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.98
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.95
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.95
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.94
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.89
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.89
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.85
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.85
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.83
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.7
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.68
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.64
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.54
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.52
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.43
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.38
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.37
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.34
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.31
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.31
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.29
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.26
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.25
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.24
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.2
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.14
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.14
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.13
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.04
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.04
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.96
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.9
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.88
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.87
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.74
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.74
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.7
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.62
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.61
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.55
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.5
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.43
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.3
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.26
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.25
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.22
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.04
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.02
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.97
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.93
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.86
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.81
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.72
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.27
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.24
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.22
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.03
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.8
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	94.69
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.69
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.68
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.59
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	94.44
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	94.36
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.81
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.8
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.56
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	93.46
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	93.29
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	93.2
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.08
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.96
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.65
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	90.94
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	89.14
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.02
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.98
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	88.91
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	88.67
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	88.12
4a2l_A	795	BT_4663, two-component system sensor histidine kin	86.53
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	86.5
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	84.8
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	84.74
4a2l_A	795	BT_4663, two-component system sensor histidine kin	83.66
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	83.52
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	83.35
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	82.41
3v9f_A	781	Two-component system sensor histidine kinase/RESP	81.12
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	80.09

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.91  E-value=5.9e-23  Score=121.62  Aligned_cols=102  Identities=17%  Similarity=0.178  Sum_probs=94.9

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |++|.+.|.+ ++|+|+++.|++++ |+.|++||+.++..+..+..|..++.+++|+|++.       ++++++.|+.|+
T Consensus         9 ~~~h~~~V~~-~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~s~s~d~~i~   80 (304)
T 2ynn_A            9 FSNRSDRVKG-IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN-------WIIVGSDDFRIR   80 (304)
T ss_dssp             EEEECSCEEE-EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT-------EEEEEETTSEEE
T ss_pred             ecCCCCceEE-EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCC-------EEEEECCCCEEE
Confidence            6789999998 99999999999998 99999999999988888989999999999999985       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||+.+++++..+..|. .|.+++|+|+++++
T Consensus        81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  112 (304)
T 2ynn_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYV  112 (304)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEE
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEE
Confidence            99999999999998887 89999999999876

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.90  E-value=1.9e-22  Score=120.37  Aligned_cols=102  Identities=22%  Similarity=0.331  Sum_probs=94.1

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +++|...|.+ ++|+|++++|++++ |+.|++||+++++....+.+|...|.+++|+|++.       ++++++.|+.++
T Consensus       202 ~~~h~~~v~~-l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-------~l~s~s~D~~v~  273 (321)
T 3ow8_A          202 LEGHAMPIRS-LTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT-------HFVSSSSDKSVK  273 (321)
T ss_dssp             ECCCSSCCCE-EEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-------EEEEEETTSCEE
T ss_pred             EcccCCceeE-EEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCC-------EEEEEeCCCcEE
Confidence            4678889998 99999999999999 89999999999888888999999999999999995       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||+.+++++..+..+. .|.+++|+|+++.|
T Consensus       274 iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l  305 (321)
T 3ow8_A          274 VWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKI  305 (321)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EEeCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            99999999999988776 99999999999876

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.90  E-value=7.4e-23  Score=129.15  Aligned_cols=100  Identities=25%  Similarity=0.372  Sum_probs=90.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |+||.+.|.+ ++|+|||++|++++ |+.|++||. +++.+..+.+|.+.|.+++|+|++.       ++++++.|+.|+
T Consensus        12 L~GH~~~V~~-~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~-------~las~~~d~~i~   82 (577)
T 2ymu_A           12 LEAHSSSVRG-VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ-------TIASASDDKTVK   82 (577)
T ss_dssp             ECCCSSCEEE-EEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSS-------EEEEEETTSCEE
T ss_pred             ECCCCCcEEE-EEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCC-------EEEEEeCCCEEE
Confidence            6899999998 99999999999998 899999995 5777889999999999999999995       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||. +++.+..+..+. .|.+++|+|+++.+
T Consensus        83 vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l  113 (577)
T 2ymu_A           83 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI  113 (577)
T ss_dssp             EEET-TSCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EEEC-CCCEEEEEECCCCCEEEEEECCCCCEE
Confidence            9996 577888888776 99999999999876

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.89  E-value=2.3e-22  Score=123.35  Aligned_cols=102  Identities=25%  Similarity=0.309  Sum_probs=94.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|.+.|.+ ++|+|+++.+++++ |+.|++||+.+++....+.+|...|.+++|+|++.       ++++++.|+.|+
T Consensus       104 l~gh~~~V~~-~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~-------~l~sgs~D~~i~  175 (410)
T 1vyh_C          104 LSGHRSPVTR-VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-------LLASCSADMTIK  175 (410)
T ss_dssp             EECCSSCEEE-EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS-------EEEEEETTSCCC
T ss_pred             ecccCCcEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-------EEEEEeCCCeEE
Confidence            5689999998 99999999999998 99999999999988889999999999999999985       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||+.+++++..+..|. .|.+++|+|+++.+
T Consensus       176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l  207 (410)
T 1vyh_C          176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI  207 (410)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEE
T ss_pred             EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEE
Confidence            99999999988888777 99999999999876

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.88  E-value=2.8e-21  Score=114.44  Aligned_cols=103  Identities=24%  Similarity=0.300  Sum_probs=94.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|.+.|.+ ++|+|++++|++++ |+.+++|+..+++....+..|...|.+++|+|++.       ++++++.|+.++
T Consensus        19 ~~gh~~~v~~-~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~s~~~d~~i~   90 (312)
T 4ery_A           19 LAGHTKAVSS-VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-------LLVSASDDKTLK   90 (312)
T ss_dssp             ECCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-------EEEEEETTSEEE
T ss_pred             EcccCCcEEE-EEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCC-------EEEEECCCCEEE
Confidence            5789999998 99999999999998 99999999998888888889999999999999985       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      +||+++++++..+..+. .+.++.|+|++++++
T Consensus        91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  123 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV  123 (312)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            99999999999988777 899999999988763

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.88  E-value=1.5e-21  Score=116.50  Aligned_cols=101  Identities=26%  Similarity=0.321  Sum_probs=92.0

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      ..|...+.+ ++|+|++++|++++ |+.|++||+++++.+..+..|..+|.+++|+|++.       ++++++.|+.|++
T Consensus       161 ~~~~~~v~~-~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-------~l~s~s~dg~i~i  232 (321)
T 3ow8_A          161 DTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-------LLVTASDDGYIKI  232 (321)
T ss_dssp             ECSSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC-------EEEEECTTSCEEE
T ss_pred             cCCCceEEE-EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC-------EEEEEcCCCeEEE
Confidence            456677887 99999999999998 99999999999988889999999999999999995       7789999999999


Q ss_pred             EeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ||+++++....+..+. .|.+++|+|+++++
T Consensus       233 wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l  263 (321)
T 3ow8_A          233 YDVQHANLAGTLSGHASWVLNVAFCPDDTHF  263 (321)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EECCCcceeEEEcCCCCceEEEEECCCCCEE
Confidence            9999999988888777 89999999999876

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.88  E-value=2.4e-21  Score=116.30  Aligned_cols=102  Identities=21%  Similarity=0.336  Sum_probs=90.4

Q ss_pred             ccCCCCCcCCCeEE-----cC-CCCEEEEEc-CCeEEEEeCCCC-------ceeeeccccCCceEEEEEecCCCCcccee
Q 033738            2 IRGGRSYVSSPPAF-----SN-DVKRLLVCT-SNTVSIFSTSTG-------LQISSLEGHTAPVTTVIVVPASTPATKIL   67 (112)
Q Consensus         2 ~~~h~~~v~~~~~~-----~~-~~~~l~~~~-~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   67 (112)
                      |++|.+.|.+ ++|     ++ +++.|++++ |+.|++||+...       .....+.+|...|.+++|+|++.      
T Consensus        17 l~gH~~~V~~-~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~------   89 (343)
T 2xzm_R           17 LEGHSDWVTS-IVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC------   89 (343)
T ss_dssp             EECCSSCEEE-EEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT------
T ss_pred             eccchhhhhh-eeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC------
Confidence            6799999998 999     76 899999999 999999998643       34456788999999999999985      


Q ss_pred             EEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           68 SYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        68 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                       ++++++.|+.+++||+++++.+..+..|. .|.+++|+|+++++
T Consensus        90 -~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l  133 (343)
T 2xzm_R           90 -FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI  133 (343)
T ss_dssp             -EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEE
T ss_pred             -EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEE
Confidence             77899999999999999999999988877 99999999999876

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=5.2e-21  Score=114.65  Aligned_cols=102  Identities=23%  Similarity=0.403  Sum_probs=94.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|.+.|.+ ++|+|++++|++++ |+.|++||+.+++.+..+..|...|.+++|+|++.       ++++++.|+.++
T Consensus        28 l~~h~~~v~~-~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~s~~~dg~i~   99 (369)
T 3zwl_B           28 LTGHERPLTQ-VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK-------YCVTGSADYSIK   99 (369)
T ss_dssp             EECCSSCEEE-EEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-------EEEEEETTTEEE
T ss_pred             EEEeeceEEE-EEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCC-------EEEEEeCCCeEE
Confidence            5789999998 99999999999998 99999999999988899999999999999999985       778999999999


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +||+.+++.+..+.....+.+++|+|+++++
T Consensus       100 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l  130 (369)
T 3zwl_B          100 LWDVSNGQCVATWKSPVPVKRVEFSPCGNYF  130 (369)
T ss_dssp             EEETTTCCEEEEEECSSCEEEEEECTTSSEE
T ss_pred             EEECCCCcEEEEeecCCCeEEEEEccCCCEE
Confidence            9999999999988866699999999999876

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.87  E-value=2.8e-21  Score=118.53  Aligned_cols=102  Identities=24%  Similarity=0.333  Sum_probs=94.6

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +++|.+.|.+ ++|+|+++.|++++ |+.|++||+.+++.+..+.+|...|.+++|+|++.       ++++++.|+.++
T Consensus       146 l~~h~~~V~~-v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~-------~l~s~s~D~~i~  217 (410)
T 1vyh_C          146 LKGHTDSVQD-ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-------HIVSASRDKTIK  217 (410)
T ss_dssp             ECCCSSCEEE-EEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS-------EEEEEETTSEEE
T ss_pred             EeccCCcEEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC-------EEEEEeCCCeEE
Confidence            5789999998 99999999999998 99999999999888899999999999999999985       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||++++.++..+..+. .+.++.++|+|.++
T Consensus       218 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l  249 (410)
T 1vyh_C          218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI  249 (410)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EEECCCCcEEEEEeCCCccEEEEEECCCCCEE
Confidence            99999999999998877 89999999999876

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.87  E-value=7.4e-21  Score=114.12  Aligned_cols=102  Identities=19%  Similarity=0.261  Sum_probs=91.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|.+.|.+ ++|+|+++.+++++ |+.|++||++++.....+..|...|.+++|+|++.       ++++++.|+.++
T Consensus       180 ~~~h~~~v~~-~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-------~l~s~s~d~~v~  251 (340)
T 1got_B          180 FTGHTGDVMS-LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-------AFATGSDDATCR  251 (340)
T ss_dssp             ECCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS-------EEEEEETTSCEE
T ss_pred             EcCCCCceEE-EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC-------EEEEEcCCCcEE
Confidence            4679999998 99999999999998 99999999999988888999999999999999995       778999999999


Q ss_pred             EEeCCCCceEEEEecCC---CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF---PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~  111 (112)
                      +||+++++.+..+..+.   .+.+++|+|+|+++
T Consensus       252 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  285 (340)
T 1got_B          252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             EEECCCCcEEEEEccCCcccceEEEEECCCCCEE
Confidence            99999988877776443   79999999999876

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.87  E-value=5.2e-21  Score=113.99  Aligned_cols=102  Identities=25%  Similarity=0.382  Sum_probs=90.5

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCC-----CceeeeccccCCceEEEEEecCCCCccceeEEEEeee
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTST-----GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS   74 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   74 (112)
                      |++|.+.|.+ ++|+|++ +.|++++ |+.|++|++..     +..+..+.+|...|.+++|+|++.       ++++++
T Consensus        13 l~gH~~~V~~-l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-------~l~s~s   84 (319)
T 3frx_A           13 LEGHNGWVTS-LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA-------YALSAS   84 (319)
T ss_dssp             ECCCSSCEEE-EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS-------EEEEEE
T ss_pred             EccccceEEE-EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC-------EEEEEe
Confidence            6899999998 9999965 8899998 99999999864     234567889999999999999995       788999


Q ss_pred             cCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           75 LDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        75 ~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .|+.+++||+.+++.+..+..|. .|.+++|+|++.++
T Consensus        85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  122 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI  122 (319)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEE
T ss_pred             CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEE
Confidence            99999999999999999998877 99999999998865

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.87  E-value=2.7e-21  Score=116.51  Aligned_cols=100  Identities=19%  Similarity=0.192  Sum_probs=87.7

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+|.+.|.+ ++|+|+|++|++++ |+.|++||+++++.+..+.+|...|.+++|++++.      .++++++.|+.|++
T Consensus       124 ~~H~~~V~~-v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~------~~l~s~s~D~~v~i  196 (344)
T 4gqb_B          124 YEHDDIVST-VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD------SVFLSCSEDNRILL  196 (344)
T ss_dssp             ECCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCT------TEEEEEETTSCEEE
T ss_pred             cCCCCCEEE-EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCC------Cceeeecccccccc
Confidence            479999998 99999999999998 99999999999999999999999999999999884      25679999999999


Q ss_pred             EeCCCCceEEEEecC--C-CEEEEEEcCCCc
Q 033738           82 WDFSTPELLKTIDVK--F-PIFSMVRGKKGF  109 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~--~-~v~~~~~~~~~~  109 (112)
                      ||++++++...+...  . .+.+++|+|++.
T Consensus       197 wd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  227 (344)
T 4gqb_B          197 WDTRCPKPASQIGCSAPGYLPTSLAWHPQQS  227 (344)
T ss_dssp             EETTSSSCEEECC----CCCEEEEEECSSCT
T ss_pred             ccccccceeeeeecceeeccceeeeecCCCC
Confidence            999999888776532  2 789999998654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.87  E-value=1.4e-20  Score=111.47  Aligned_cols=102  Identities=27%  Similarity=0.443  Sum_probs=93.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|...|.+ ++|+|+++.|++++ |+.|++||+++++.+..+..|...+.+++|+|++.       ++++++.|+.++
T Consensus        61 ~~~h~~~v~~-~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~s~~~d~~i~  132 (312)
T 4ery_A           61 ISGHKLGISD-VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-------LIVSGSFDESVR  132 (312)
T ss_dssp             ECCCSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-------EEEEEETTSCEE
T ss_pred             hccCCCceEE-EEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC-------EEEEEeCCCcEE
Confidence            4678889998 99999999999998 99999999999988888999999999999999985       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||+++++++..+..+. ++.++.|+|+++++
T Consensus       133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  164 (312)
T 4ery_A          133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI  164 (312)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence            99999999988888776 89999999999876

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.86  E-value=8.6e-21  Score=112.02  Aligned_cols=102  Identities=20%  Similarity=0.263  Sum_probs=86.0

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC--CceeeeccccCCceEEEEEecC--CCCccceeEEEEeeecC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST--GLQISSLEGHTAPVTTVIVVPA--STPATKILSYCWTASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~d   76 (112)
                      +.+|.+.|.+ ++|+|+|++|++++ |+.|++||+..  .+.+..+.+|.+.|.+++|+++  +.       ++++++.|
T Consensus         5 ~~~h~~~V~~-~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~-------~l~s~s~D   76 (297)
T 2pm7_B            5 ANAHNEMIHD-AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-------ILASCSYD   76 (297)
T ss_dssp             CCSCSSCEEE-EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCS-------EEEEEETT
T ss_pred             ccCCcCceEE-EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCC-------EEEEEcCC
Confidence            6789999998 99999999999998 99999999874  3556788899999999999863  53       77899999


Q ss_pred             CcEEEEeCCCCc--eEEEEecCC-CEEEEEEcCC--CcEe
Q 033738           77 ETIKYWDFSTPE--LLKTIDVKF-PIFSMVRGKK--GFAV  111 (112)
Q Consensus        77 ~~i~~~~~~~~~--~~~~~~~~~-~v~~~~~~~~--~~~~  111 (112)
                      +.+++||+++++  .+..+..+. .|.+++|+|+  |.++
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l  116 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPML  116 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEE
Confidence            999999998774  455566555 8999999997  6554

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.86  E-value=1.4e-20  Score=111.50  Aligned_cols=102  Identities=19%  Similarity=0.297  Sum_probs=88.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|...+.+ ++|+|+++.|++++ |+.|++||+++++.+..+..|...|.+++|+|++.       ++++++.|+.++
T Consensus        51 ~~~~~~~v~~-~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~sgs~D~~v~  122 (304)
T 2ynn_A           51 IQVTETPVRA-GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-------YVLSGSDDLTVK  122 (304)
T ss_dssp             EECCSSCEEE-EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-------EEEEEETTSCEE
T ss_pred             eeccCCcEEE-EEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCC-------EEEEECCCCeEE
Confidence            4567888887 99999999999998 99999999999998899999999999999999995       778999999999


Q ss_pred             EEeCCCCc-eEEEEecCC-CEEEEEEcC-CCcEe
Q 033738           81 YWDFSTPE-LLKTIDVKF-PIFSMVRGK-KGFAV  111 (112)
Q Consensus        81 ~~~~~~~~-~~~~~~~~~-~v~~~~~~~-~~~~~  111 (112)
                      +||++++. ....+..|. .|.+++|+| ++..+
T Consensus       123 lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l  156 (304)
T 2ynn_A          123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (304)
T ss_dssp             EEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred             EEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence            99998874 445666666 899999999 45544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.86  E-value=2.9e-20  Score=112.20  Aligned_cols=101  Identities=19%  Similarity=0.317  Sum_probs=91.2

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecC--CCCccceeEEEEeeecCCcE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPA--STPATKILSYCWTASLDETI   79 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~d~~i   79 (112)
                      .+|.+.+.+ ++|+|+++.+++++ |+.|++||+++++.+..+.+|...+.+++++|+  +.       ++++++.|+.+
T Consensus       151 ~~h~~~v~~-~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~-------~l~sgs~Dg~v  222 (354)
T 2pbi_B          151 AMHTNYLSA-CSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN-------TFVSGGCDKKA  222 (354)
T ss_dssp             EECSSCEEE-EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC-------EEEEEETTSCE
T ss_pred             eccCCcEEE-EEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC-------EEEEEeCCCeE
Confidence            468888987 99999999999998 999999999999988999999999999999885  43       67799999999


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ++||+++++++..+..|. .|.+++|+|+++.+
T Consensus       223 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l  255 (354)
T 2pbi_B          223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGDAF  255 (354)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EEEECCCCcEEEEecCCCCCeEEEEEeCCCCEE
Confidence            999999999999988776 89999999999876

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.86  E-value=1.6e-20  Score=112.91  Aligned_cols=102  Identities=22%  Similarity=0.244  Sum_probs=86.3

Q ss_pred             ccCCCC-CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCcee---eeccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738            2 IRGGRS-YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI---SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus         2 ~~~h~~-~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      +++|.+ .+.. ++|+|+|++|++++ |+.|++||+..+...   ....+|...|.+++|+|++.       ++++++.|
T Consensus        11 ~~~h~~~~v~~-l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-------~l~s~s~D   82 (345)
T 3fm0_A           11 VPAHPDSRCWF-LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-------YLASASFD   82 (345)
T ss_dssp             ECCSTTSCEEE-EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS-------EEEEEETT
T ss_pred             ecCCCCCcEEE-EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC-------EEEEEECC
Confidence            568887 7887 99999999999998 999999999876432   22357899999999999995       78899999


Q ss_pred             CcEEEEeCCCC--ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           77 ETIKYWDFSTP--ELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        77 ~~i~~~~~~~~--~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +.+++||...+  +++..+..|. .|.+++|+|+++++
T Consensus        83 ~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l  120 (345)
T 3fm0_A           83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL  120 (345)
T ss_dssp             SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEE
Confidence            99999998876  3566777776 99999999999876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.85  E-value=7.1e-21  Score=113.26  Aligned_cols=102  Identities=19%  Similarity=0.248  Sum_probs=81.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc--eeeeccccCCceEEEEEecC--CCCccceeEEEEeeecC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL--QISSLEGHTAPVTTVIVVPA--STPATKILSYCWTASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~d   76 (112)
                      +.+|.+.|.+ ++|+|+|++|++++ |+.|++||+.++.  .+..+.+|.+.|.+++|+++  +.       ++++++.|
T Consensus         9 ~~~H~~~V~~-v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~-------~l~s~s~D   80 (316)
T 3bg1_A            9 DTSHEDMIHD-AQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN-------ILASCSYD   80 (316)
T ss_dssp             -----CCEEE-EEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSS-------CEEEEETT
T ss_pred             cccccCeEEE-eeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCC-------EEEEEECC
Confidence            5789999998 99999999999998 9999999998764  35678899999999999753  53       67799999


Q ss_pred             CcEEEEeCCCCc--eEEEEecCC-CEEEEEEcCC--CcEe
Q 033738           77 ETIKYWDFSTPE--LLKTIDVKF-PIFSMVRGKK--GFAV  111 (112)
Q Consensus        77 ~~i~~~~~~~~~--~~~~~~~~~-~v~~~~~~~~--~~~~  111 (112)
                      +.+++||++++.  ....+..|. .|.+++|+|+  +.++
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~l  120 (316)
T 3bg1_A           81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLIL  120 (316)
T ss_dssp             SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCE
T ss_pred             CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEE
Confidence            999999998874  455666665 8999999997  5443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.85  E-value=3.3e-20  Score=113.20  Aligned_cols=103  Identities=25%  Similarity=0.349  Sum_probs=90.6

Q ss_pred             ccCCCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCC-------ceeeeccccCCceEEEEEecCCCCccceeEEEEe
Q 033738            2 IRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTG-------LQISSLEGHTAPVTTVIVVPASTPATKILSYCWT   72 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   72 (112)
                      +.+|.+.|.+ ++|+| +++.|++++ |+.|++||+.++       +.+..+.+|...|.+++|+|++.      .++++
T Consensus        77 ~~~h~~~V~~-~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~------~~l~s  149 (402)
T 2aq5_A           77 VCGHTAPVLD-IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ------NVLLS  149 (402)
T ss_dssp             BCCCSSCEEE-EEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBT------TEEEE
T ss_pred             EecCCCCEEE-EEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCC------CEEEE
Confidence            5689999998 99999 899999998 999999999876       45677888999999999999973      26779


Q ss_pred             eecCCcEEEEeCCCCceEEEE--ecCC-CEEEEEEcCCCcEe
Q 033738           73 ASLDETIKYWDFSTPELLKTI--DVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        73 ~~~d~~i~~~~~~~~~~~~~~--~~~~-~v~~~~~~~~~~~~  111 (112)
                      ++.|+.+++||+++++.+..+  ..+. .+.+++|+|+++++
T Consensus       150 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  191 (402)
T 2aq5_A          150 AGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI  191 (402)
T ss_dssp             EETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred             EcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence            999999999999999998888  5555 89999999999865

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.85  E-value=3.7e-20  Score=111.31  Aligned_cols=101  Identities=19%  Similarity=0.262  Sum_probs=87.1

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC--ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG--LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      .+|...|.+ ++|+|++++|++++ |+.+++|+...+  +....+.+|...|.+++|+|++.       ++++++.|+.+
T Consensus        58 ~~h~~~v~~-~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-------~l~s~s~D~~v  129 (345)
T 3fm0_A           58 EGHQRTVRK-VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-------LLATCSRDKSV  129 (345)
T ss_dssp             SSCSSCEEE-EEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-------EEEEEETTSCE
T ss_pred             cccCCcEEE-EEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-------EEEEEECCCeE
Confidence            579999998 99999999999999 999999998765  34667888999999999999995       78899999999


Q ss_pred             EEEeCCCCc---eEEEEecCC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPE---LLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~---~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ++||+.++.   ++..+..+. .+.+++|+|+++++
T Consensus       130 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  165 (345)
T 3fm0_A          130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL  165 (345)
T ss_dssp             EEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred             EEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence            999998763   345555565 89999999999865

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.85  E-value=4.3e-20  Score=118.03  Aligned_cols=103  Identities=23%  Similarity=0.321  Sum_probs=88.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-------ccCCceEEEEEecCCCCccceeEEEEee
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-------GHTAPVTTVIVVPASTPATKILSYCWTA   73 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~   73 (112)
                      +.+|...|.+ ++|+|||+.|++++ |+.|++||..+++....+.       +|.+.|.+++|+|++.       +++++
T Consensus       186 l~~H~~~V~~-v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-------~l~s~  257 (611)
T 1nr0_A          186 FGEHTKFVHS-VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-------KIASA  257 (611)
T ss_dssp             ECCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-------EEEEE
T ss_pred             eccccCceEE-EEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-------EEEEE
Confidence            5689999998 99999999999998 9999999999888777663       6899999999999995       77899


Q ss_pred             ecCCcEEEEeCCCCceEEEE-------------------------------------------ecCC-CEEEEEEcCCCc
Q 033738           74 SLDETIKYWDFSTPELLKTI-------------------------------------------DVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        74 ~~d~~i~~~~~~~~~~~~~~-------------------------------------------~~~~-~v~~~~~~~~~~  109 (112)
                      +.|+.+++||+.+++++..+                                           ..|. .|.+++|+|+|+
T Consensus       258 s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~  337 (611)
T 1nr0_A          258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK  337 (611)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC
Confidence            99999999999887665443                                           2344 799999999998


Q ss_pred             EeC
Q 033738          110 AVF  112 (112)
Q Consensus       110 ~~~  112 (112)
                      +++
T Consensus       338 ~l~  340 (611)
T 1nr0_A          338 TLF  340 (611)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            763

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.85  E-value=4.2e-20  Score=118.07  Aligned_cols=102  Identities=20%  Similarity=0.224  Sum_probs=91.3

Q ss_pred             ccCCCCCcCCCeEEcCCCC-EEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVK-RLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~-~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.+|...|.+ ++|+|++. .|++++ |+.+++||..+++....+.+|...|.+++|+|++.       ++++++.|+.+
T Consensus       143 l~gh~~~v~~-v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~-------~las~s~D~~i  214 (611)
T 1nr0_A          143 LTGQARAMNS-VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-------LFASTGGDGTI  214 (611)
T ss_dssp             CCCCSSCEEE-EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-------EEEEEETTSCE
T ss_pred             ecCCCCCceE-EEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC-------EEEEEECCCcE
Confidence            5789999998 99999986 588888 99999999988888888999999999999999995       78899999999


Q ss_pred             EEEeCCCCceEEEEe-------cCC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTID-------VKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~-------~~~-~v~~~~~~~~~~~~  111 (112)
                      ++||..+++++..+.       .|. .|.+++|+|+|+++
T Consensus       215 ~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l  254 (611)
T 1nr0_A          215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI  254 (611)
T ss_dssp             EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred             EEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEE
Confidence            999999998888774       354 89999999999876

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.85  E-value=3.5e-20  Score=117.03  Aligned_cols=101  Identities=26%  Similarity=0.412  Sum_probs=90.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|...+.+ ++|+|++++|++++ |+.|++||. +++.+..+.+|...|.+++|+|++.       ++++++.|+.|+
T Consensus       463 ~~~~~~~v~~-~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~-------~l~s~~~dg~v~  533 (577)
T 2ymu_A          463 LTGHSSSVRG-VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ-------TIASASDDKTVK  533 (577)
T ss_dssp             EECCSSCEEE-EEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSS-------CEEEEETTSEEE
T ss_pred             EcCCCCCEEE-EEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCC-------EEEEEECcCEEE
Confidence            4678889998 99999999999998 899999996 4777888999999999999999995       777999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      +||. +++++..+..|. .|.+++|+|+|++|+
T Consensus       534 lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~  565 (577)
T 2ymu_A          534 LWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIA  565 (577)
T ss_dssp             EECT-TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred             EEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            9996 588888888877 999999999998763

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.85  E-value=4.2e-20  Score=112.29  Aligned_cols=103  Identities=18%  Similarity=0.224  Sum_probs=87.1

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccC-------CceEEEEEecCCCCccceeEEEEee
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHT-------APVTTVIVVPASTPATKILSYCWTA   73 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~   73 (112)
                      +.+|.+.|.+ ++|+|+++.|++++ |+.|++||+++++.+..+..+.       ..+.+++|+|++.       +++++
T Consensus       245 ~~~h~~~v~~-v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-------~l~~g  316 (380)
T 3iz6_a          245 YHGHEGDINS-VKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-------LLFAG  316 (380)
T ss_dssp             ECCCSSCCCE-EEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-------EEEEE
T ss_pred             ECCcCCCeEE-EEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC-------EEEEE
Confidence            4679999998 99999999999999 9999999999987766654322       2478999999996       77899


Q ss_pred             ecCCcEEEEeCCCCceEEEE----ecCC-CEEEEEEcCCCcEeC
Q 033738           74 SLDETIKYWDFSTPELLKTI----DVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        74 ~~d~~i~~~~~~~~~~~~~~----~~~~-~v~~~~~~~~~~~~~  112 (112)
                      +.|+.+++||...++.+..+    ..|. .|.+++|+|+|++|+
T Consensus       317 ~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  360 (380)
T 3iz6_a          317 YSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC  360 (380)
T ss_dssp             CTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEE
T ss_pred             ECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEE
Confidence            99999999999998887776    3444 899999999998763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.85  E-value=5.3e-20  Score=109.25  Aligned_cols=102  Identities=16%  Similarity=0.263  Sum_probs=87.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC----ceeeeccccCCceEEEEEec--CCCCccceeEEEEeee
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG----LQISSLEGHTAPVTTVIVVP--ASTPATKILSYCWTAS   74 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~   74 (112)
                      +.+|.+.|.+ ++|+|++++|++++ |+.|++||+.++    +....+..|...|.+++|+|  ++.       ++++++
T Consensus         7 ~~gH~~~v~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-------~l~s~~   78 (351)
T 3f3f_A            7 DSGHDDLVHD-VVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR-------IIASAS   78 (351)
T ss_dssp             ECCCSSCEEE-EEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS-------EEEEEE
T ss_pred             CcccccceeE-EEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC-------EEEEEc
Confidence            6789999998 99999999999998 899999999865    34566778999999999999  464       778999


Q ss_pred             cCCcEEEEeCCCC---------ceEEEEecCC-CEEEEEEcCC--CcEe
Q 033738           75 LDETIKYWDFSTP---------ELLKTIDVKF-PIFSMVRGKK--GFAV  111 (112)
Q Consensus        75 ~d~~i~~~~~~~~---------~~~~~~~~~~-~v~~~~~~~~--~~~~  111 (112)
                      .|+.+++||+.++         +.+..+..+. .+.+++|+|+  ++++
T Consensus        79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            9999999999876         4466666665 8999999999  7765

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.85  E-value=5e-20  Score=110.18  Aligned_cols=98  Identities=29%  Similarity=0.382  Sum_probs=81.6

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC-C---ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST-G---LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      +.+|.+.|.+ ++|+|++++|++++ |+.|++||++. +   +.+..+..|...|.+++|+|++.       ++++++.|
T Consensus       103 ~~~h~~~V~~-v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-------~l~s~s~D  174 (330)
T 2hes_X          103 IEGHENEVKG-VAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-------LLASSSYD  174 (330)
T ss_dssp             EC----CEEE-EEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-------EEEEEETT
T ss_pred             EcCCCCcEEE-EEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-------EEEEEcCC
Confidence            4689999998 99999999999998 99999999943 2   34567788999999999999985       77899999


Q ss_pred             CcEEEEeCCCC--ceEEEEecCC-CEEEEEEcCC
Q 033738           77 ETIKYWDFSTP--ELLKTIDVKF-PIFSMVRGKK  107 (112)
Q Consensus        77 ~~i~~~~~~~~--~~~~~~~~~~-~v~~~~~~~~  107 (112)
                      +.+++||..++  +++..+..|. .|.+++|+|+
T Consensus       175 ~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~  208 (330)
T 2hes_X          175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT  208 (330)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCS
T ss_pred             CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCC
Confidence            99999998766  5677777776 9999999998

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.85  E-value=7e-20  Score=109.90  Aligned_cols=101  Identities=22%  Similarity=0.353  Sum_probs=90.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|.+.+.+ +.|++++. +++++ |+.|++||+++++....+.+|.+.|.+++|+|++.       ++++++.|+.++
T Consensus       139 ~~~h~~~v~~-~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~sg~~d~~v~  209 (340)
T 1got_B          139 LAGHTGYLSC-CRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-------LFVSGACDASAK  209 (340)
T ss_dssp             EECCSSCEEE-EEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-------EEEEEETTSCEE
T ss_pred             ecCCCccEEE-EEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-------EEEEEeCCCcEE
Confidence            4578889987 99998876 55665 99999999999988889999999999999999985       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||++++.+...+..+. .+.+++|+|+++++
T Consensus       210 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l  241 (340)
T 1got_B          210 LWDVREGMCRQTFTGHESDINAICFFPNGNAF  241 (340)
T ss_dssp             EEETTTCSEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EEECCCCeeEEEEcCCcCCEEEEEEcCCCCEE
Confidence            99999999999988776 89999999999876

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.84  E-value=3.5e-20  Score=111.66  Aligned_cols=99  Identities=18%  Similarity=0.148  Sum_probs=80.9

Q ss_pred             CCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            5 GRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         5 h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      |...+.+ ++|+|+ ++++++++ |+.|++||+++++.+..+.+|...|.+++|+|++.      .++++++.|+.|++|
T Consensus       213 ~~~~~~~-~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~------~~lasgs~D~~i~vw  285 (344)
T 4gqb_B          213 PGYLPTS-LAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSV------PFLASLSEDCSLAVL  285 (344)
T ss_dssp             -CCCEEE-EEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSS------CCEEEEETTSCEEEE
T ss_pred             eecccee-eeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC------eEEEEEeCCCeEEEE
Confidence            4445666 999986 46788888 89999999999988899999999999999999974      256799999999999


Q ss_pred             eCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           83 DFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      |..++++.. +..|. .|.+++|+|+++.+
T Consensus       286 d~~~~~~~~-~~~H~~~V~~v~~sp~~~~l  314 (344)
T 4gqb_B          286 DSSLSELFR-SQAHRDFVRDATWSPLNHSL  314 (344)
T ss_dssp             CTTCCEEEE-ECCCSSCEEEEEECSSSTTE
T ss_pred             ECCCCcEEE-EcCCCCCEEEEEEeCCCCeE
Confidence            999887654 45555 99999999998743

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.1e-19  Score=108.78  Aligned_cols=99  Identities=18%  Similarity=0.224  Sum_probs=79.9

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC-------CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST-------GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      |...|.+ ++|+|+++.|++++ |+.|++||...       .+....+.+|...|.+++|+|++.       ++++++.|
T Consensus        57 h~~~v~~-v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-------~las~s~D  128 (330)
T 2hes_X           57 HKKAIRS-VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-------YLATCSRD  128 (330)
T ss_dssp             CCSCEEE-EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-------EEEEEETT
T ss_pred             ccCCEEE-EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-------EEEEEeCC
Confidence            8889998 99999999999998 99999999853       234566788999999999999995       78899999


Q ss_pred             CcEEEEeCCCC----ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           77 ETIKYWDFSTP----ELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        77 ~~i~~~~~~~~----~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +.+++||++..    +++..+..|. .|.+++|+|+++++
T Consensus       129 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l  168 (330)
T 2hes_X          129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALL  168 (330)
T ss_dssp             SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEE
T ss_pred             CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEE
Confidence            99999999432    4566677666 89999999999876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.84  E-value=5.7e-20  Score=119.79  Aligned_cols=102  Identities=18%  Similarity=0.182  Sum_probs=94.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +++|.+.|.+ ++|+|+++.+++++ ++.|++||..+++.+..+..|.+.|.+++|+|++.       ++++++.|+.++
T Consensus         9 ~~~h~~~v~~-i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~   80 (814)
T 3mkq_A            9 FSNRSDRVKG-IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN-------WIIVGSDDFRIR   80 (814)
T ss_dssp             EEEECSCEEE-EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT-------EEEEEETTSEEE
T ss_pred             eecCCCceEE-EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCC-------EEEEEeCCCeEE
Confidence            5789999998 99999999999998 89999999999988889999999999999999995       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||+.+++.+..+..+. .+.+++|+|+++.+
T Consensus        81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  112 (814)
T 3mkq_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYV  112 (814)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEE
T ss_pred             EEECCCCcEEEEEecCCCCEEEEEEeCCCCEE
Confidence            99999999999888776 89999999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.84  E-value=2.1e-19  Score=107.06  Aligned_cols=102  Identities=16%  Similarity=0.273  Sum_probs=90.7

Q ss_pred             ccCCCCCcCCCeEEcCCC------CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee
Q 033738            2 IRGGRSYVSSPPAFSNDV------KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS   74 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~------~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   74 (112)
                      +.+|...+.+ ++++|.+      ..+++++ |+.|++||+++.+....+.+|...|.+++|+|++.       ++++++
T Consensus       144 ~~~h~~~v~~-~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~-------~l~s~~  215 (319)
T 3frx_A          144 LLGHNDWVSQ-VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-------LIASAG  215 (319)
T ss_dssp             ECCCSSCEEE-EEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS-------EEEEEE
T ss_pred             EeccCCcEEE-EEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC-------EEEEEe
Confidence            4578888887 9999854      4788888 99999999998888888889999999999999995       788999


Q ss_pred             cCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           75 LDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        75 ~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      .|+.|++||+.+++++..+..+..+.+++|+|++..+
T Consensus       216 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l  252 (319)
T 3frx_A          216 KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWL  252 (319)
T ss_dssp             TTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEE
T ss_pred             CCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEE
Confidence            9999999999999999999888899999999999865

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.84  E-value=1.6e-19  Score=108.99  Aligned_cols=102  Identities=12%  Similarity=0.097  Sum_probs=88.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecccc--CCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGH--TAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +.+|...|.+ ++|+|+++.+++++ |+.|++||++.++....+..+  ...+.+++|+|++.       ++++++.|+.
T Consensus       236 ~~~h~~~v~~-v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-------~l~~g~~d~~  307 (354)
T 2pbi_B          236 FETHESDVNS-VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR-------LLFAGYNDYT  307 (354)
T ss_dssp             ECCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS-------EEEEEETTSC
T ss_pred             ecCCCCCeEE-EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC-------EEEEEECCCc
Confidence            4678899998 99999999999998 999999999887665555432  34678999999995       7789999999


Q ss_pred             EEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +++||+.++..+..+..|. .|.+++|+|+|++|
T Consensus       308 i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l  341 (354)
T 2pbi_B          308 INVWDVLKGSRVSILFGHENRVSTLRVSPDGTAF  341 (354)
T ss_dssp             EEEEETTTCSEEEEECCCSSCEEEEEECTTSSCE
T ss_pred             EEEEECCCCceEEEEECCCCcEEEEEECCCCCEE
Confidence            9999999999988888776 99999999999876

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=5.4e-20  Score=110.65  Aligned_cols=103  Identities=21%  Similarity=0.283  Sum_probs=88.5

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC--CCceeeeccccCCceEEEEEecC--CCCccceeEEEEeeec
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS--TGLQISSLEGHTAPVTTVIVVPA--STPATKILSYCWTASL   75 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~   75 (112)
                      ++.+|.+.|.+ ++|+|++++|++++ |+.|++||+.  +++....+..|...|.+++|+++  +.       ++++++.
T Consensus         6 ~~~~h~~~v~~-~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-------~l~s~~~   77 (379)
T 3jrp_A            6 IANAHNELIHD-AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-------ILASCSY   77 (379)
T ss_dssp             CEEECCCCEEE-EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-------EEEEEET
T ss_pred             EecCCcccEEE-EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCC-------EEEEecc
Confidence            36789999998 99999999999998 9999999997  55666788889999999999876  64       7789999


Q ss_pred             CCcEEEEeCCCCc--eEEEEecCC-CEEEEEEcCC--CcEe
Q 033738           76 DETIKYWDFSTPE--LLKTIDVKF-PIFSMVRGKK--GFAV  111 (112)
Q Consensus        76 d~~i~~~~~~~~~--~~~~~~~~~-~v~~~~~~~~--~~~~  111 (112)
                      |+.+++||+.+++  .+..+..+. .+.+++|+|+  +..+
T Consensus        78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  118 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL  118 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEE
Confidence            9999999999886  556665555 9999999999  7665

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.83  E-value=2.7e-19  Score=107.13  Aligned_cols=102  Identities=23%  Similarity=0.298  Sum_probs=88.7

Q ss_pred             ccCCCCCcCCCeEEcCC---CCEEEEEc-CCeEEEEeCCC-Ccee-eeccccCCceEEEEEecCCCCccceeEEEEeeec
Q 033738            2 IRGGRSYVSSPPAFSND---VKRLLVCT-SNTVSIFSTST-GLQI-SSLEGHTAPVTTVIVVPASTPATKILSYCWTASL   75 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~---~~~l~~~~-~~~v~~~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   75 (112)
                      +.+|.+.|.+ ++|+|+   |+.|++++ |+.|++||+.+ +... ..+..|...|.+++|+|++.       ++++++.
T Consensus        35 ~~~h~~~v~~-~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~s~~~  106 (368)
T 3mmy_A           35 TSSPDDSIGC-LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS-------KVFTASC  106 (368)
T ss_dssp             SSCCSSCEEE-EEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS-------EEEEEET
T ss_pred             ccCCCCceEE-EEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC-------EEEEEcC
Confidence            6789999998 999999   59999998 89999999987 5444 67778999999999999985       7779999


Q ss_pred             CCcEEEEeCCCCceEEEEecCCCEEEEEE--cCCCcEe
Q 033738           76 DETIKYWDFSTPELLKTIDVKFPIFSMVR--GKKGFAV  111 (112)
Q Consensus        76 d~~i~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~  111 (112)
                      |+.+++||+.+++.+........+.+++|  +|+++++
T Consensus       107 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  144 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCV  144 (368)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEE
T ss_pred             CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEE
Confidence            99999999999988776665559999999  8888765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.83  E-value=3e-19  Score=108.99  Aligned_cols=96  Identities=21%  Similarity=0.310  Sum_probs=87.1

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      .|.+ ++|+|+|++|++++ |+.|++||+.+++....+.+|...|.+++|+|++.       ++++++.|+.+++||+++
T Consensus       125 ~v~~-v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-------~l~s~s~d~~v~iwd~~~  196 (393)
T 1erj_A          125 YIRS-VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-------KLVSGSGDRTVRIWDLRT  196 (393)
T ss_dssp             BEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-------EEEEEETTSEEEEEETTT
T ss_pred             eEEE-EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC-------EEEEecCCCcEEEEECCC
Confidence            4776 99999999999998 99999999999988888999999999999999995       777999999999999999


Q ss_pred             CceEEEEecCCCEEEEEEcC-CCcEe
Q 033738           87 PELLKTIDVKFPIFSMVRGK-KGFAV  111 (112)
Q Consensus        87 ~~~~~~~~~~~~v~~~~~~~-~~~~~  111 (112)
                      +++...+..+..+.+++|+| +++++
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (393)
T 1erj_A          197 GQCSLTLSIEDGVTTVAVSPGDGKYI  222 (393)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCCEE
T ss_pred             CeeEEEEEcCCCcEEEEEECCCCCEE
Confidence            99988888777999999999 77765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.83  E-value=2.6e-19  Score=109.22  Aligned_cols=101  Identities=21%  Similarity=0.300  Sum_probs=86.9

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccC------------------CceEEEEEecCCCCccc
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHT------------------APVTTVIVVPASTPATK   65 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~~~~   65 (112)
                      +|.+.|.+ ++|+|||++|++++++.+++|++.+++.+..+..+.                  ..|.+++|+|++.    
T Consensus        62 ~h~~~V~~-v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~----  136 (393)
T 1erj_A           62 DHTSVVCC-VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK----  136 (393)
T ss_dssp             ECSSCCCE-EEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS----
T ss_pred             CCCCEEEE-EEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC----
Confidence            58889998 999999999999988999999999887766654332                  2488999999995    


Q ss_pred             eeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           66 ILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        66 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                         ++++++.|+.|++||+.+++.+..+..|. .|.+++|+|+++.++
T Consensus       137 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  181 (393)
T 1erj_A          137 ---FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV  181 (393)
T ss_dssp             ---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ---EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEE
Confidence               77899999999999999999988888777 899999999998763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.83  E-value=1.5e-19  Score=109.29  Aligned_cols=101  Identities=11%  Similarity=0.088  Sum_probs=85.1

Q ss_pred             CCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            4 GGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .|...+.+ ++|+|++ .++++++ |+.|++||+++++.+..+..+...|.+++|+|++.      .++++++.|+.|++
T Consensus       224 ~~~~~v~~-v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~------~~lasgs~D~~i~i  296 (357)
T 4g56_B          224 ASDTIPTS-VTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSS------PFLASISEDCTVAV  296 (357)
T ss_dssp             TCCSCEEE-EEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSS------CCEEEEETTSCEEE
T ss_pred             cccccccc-hhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCC------CEEEEEeCCCEEEE
Confidence            35556776 9999985 6788887 89999999999988888999999999999999874      25679999999999


Q ss_pred             EeCCCCceEEEEecCCCEEEEEEcC-CCcEe
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVRGK-KGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  111 (112)
                      ||+++++++..+.....|++++|+| ++.+|
T Consensus       297 wd~~~~~~~~~~~H~~~V~~vafsP~d~~~l  327 (357)
T 4g56_B          297 LDADFSEVFRDLSHRDFVTGVAWSPLDHSKF  327 (357)
T ss_dssp             ECTTSCEEEEECCCSSCEEEEEECSSSTTEE
T ss_pred             EECCCCcEeEECCCCCCEEEEEEeCCCCCEE
Confidence            9999998877665445999999998 67665

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.83  E-value=1.4e-19  Score=109.70  Aligned_cols=102  Identities=15%  Similarity=0.082  Sum_probs=85.3

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CC----eEEEEeCCCCce----eeeccccCCceEEEEEecCCCCccceeEEEEee
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SN----TVSIFSTSTGLQ----ISSLEGHTAPVTTVIVVPASTPATKILSYCWTA   73 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~----~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   73 (112)
                      .+|...+.+ ++|+|+++.+++++ ++    .++.|++.....    ...+..|...|++++|+|++.       +++++
T Consensus       216 ~~~~~~v~~-v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-------~lasg  287 (365)
T 4h5i_A          216 FDKNWSLSK-INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-------LAVLA  287 (365)
T ss_dssp             CCTTEEEEE-EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-------EEEEE
T ss_pred             CCCCCCEEE-EEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-------ceEEE
Confidence            457777887 99999999999887 54    688888765532    345667888999999999996       88899


Q ss_pred             ecCCcEEEEeCCCCceEEEE-ecCC-CEEEEEEcCCCcEeC
Q 033738           74 SLDETIKYWDFSTPELLKTI-DVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        74 ~~d~~i~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~~~  112 (112)
                      +.|+.|++||+++++++..+ ..|. +|++++|+|+|++|+
T Consensus       288 s~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la  328 (365)
T 4h5i_A          288 SNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA  328 (365)
T ss_dssp             ETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred             cCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE
Confidence            99999999999999998886 4566 999999999999873

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.83  E-value=2.8e-19  Score=115.56  Aligned_cols=102  Identities=14%  Similarity=0.269  Sum_probs=89.8

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCC-----ceeeeccccCCceEEEEEecCCCCccceeEEEEeee
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTG-----LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS   74 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   74 (112)
                      +++|.+.|.+ ++++|++ +.|++++ |+.|++|++...     .....+.+|...|.+++|+|++.       ++++++
T Consensus       378 l~~H~~~V~~-v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~-------~l~sgs  449 (694)
T 3dm0_A          378 MRAHTDMVTA-IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ-------FALSGS  449 (694)
T ss_dssp             EECCSSCEEE-EECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS-------EEEEEE
T ss_pred             cccCCceeEE-EEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC-------EEEEEe
Confidence            5789999998 9999875 7889998 999999998753     23456788999999999999995       778999


Q ss_pred             cCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           75 LDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        75 ~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .|+.|++||+.++..+..+..|. .|.+++|+|+++.+
T Consensus       450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  487 (694)
T 3dm0_A          450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI  487 (694)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEE
Confidence            99999999999999999888877 99999999999865

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.83  E-value=5.6e-19  Score=106.03  Aligned_cols=98  Identities=18%  Similarity=0.232  Sum_probs=84.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|...|.+ ++|+|++.++++++ |+.|++||+++++.+..+.+|...|.+++|+|++.       ++++++.|+.++
T Consensus        72 l~~h~~~V~~-~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-------~l~s~~~d~~i~  143 (343)
T 2xzm_R           72 LTGHNHFVSD-LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-------QILSAGAEREIK  143 (343)
T ss_dssp             ECCCSSCEEE-EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT-------EEEEEETTSCEE
T ss_pred             hccCCCceEE-EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC-------EEEEEcCCCEEE
Confidence            5689999998 99999999999998 99999999999988889999999999999999995       777999999999


Q ss_pred             EEeCCCCceEEEEe---cCC-CEEEEEEcCCC
Q 033738           81 YWDFSTPELLKTID---VKF-PIFSMVRGKKG  108 (112)
Q Consensus        81 ~~~~~~~~~~~~~~---~~~-~v~~~~~~~~~  108 (112)
                      +||+.. .......   .+. .+.+++|+|++
T Consensus       144 ~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~  174 (343)
T 2xzm_R          144 LWNILG-ECKFSSAEKENHSDWVSCVRYSPIM  174 (343)
T ss_dssp             EEESSS-CEEEECCTTTSCSSCEEEEEECCCC
T ss_pred             EEeccC-CceeeeecccCCCceeeeeeecccc
Confidence            999983 3333332   233 79999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.82  E-value=9.4e-20  Score=110.12  Aligned_cols=100  Identities=17%  Similarity=0.174  Sum_probs=86.9

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+|.+.|.+ ++|+|+++.|++++ |+.|++||+++++.+..+..|...|.+++|++++.      .++++++.|+.+++
T Consensus       136 ~~h~~~V~~-v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~------~~~~s~~~dg~v~~  208 (357)
T 4g56_B          136 YEHDDIVKT-LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD------TIFLSCGEDGRILL  208 (357)
T ss_dssp             CCCSSCEEE-EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS------SCEEEEETTSCEEE
T ss_pred             CCCCCCEEE-EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC------ceeeeeccCCceEE
Confidence            368889998 99999999999998 99999999999998899999999999999999874      25669999999999


Q ss_pred             EeCCCCceEEEEec--CC-CEEEEEEcCCCc
Q 033738           82 WDFSTPELLKTIDV--KF-PIFSMVRGKKGF  109 (112)
Q Consensus        82 ~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~  109 (112)
                      ||++++++...+..  +. .+.+++|+|++.
T Consensus       209 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  239 (357)
T 4g56_B          209 WDTRKPKPATRIDFCASDTIPTSVTWHPEKD  239 (357)
T ss_dssp             CCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred             EECCCCceeeeeeeccccccccchhhhhccc
Confidence            99999887765543  22 799999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.82  E-value=1.1e-19  Score=110.99  Aligned_cols=95  Identities=24%  Similarity=0.325  Sum_probs=82.8

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|.+.|.+ ++|+|+++.|++++ |+.|++||+.+++.+..+..|...|.+++|+|++.       ++++++.|+.++
T Consensus       135 ~~~h~~~v~~-~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~s~~~d~~v~  206 (420)
T 3vl1_A          135 DQAHVSEITK-LKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR-------NVLSASLDGTIR  206 (420)
T ss_dssp             TTSSSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT-------EEEEEETTSCEE
T ss_pred             cccccCccEE-EEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC-------EEEEEcCCCcEE
Confidence            4689999998 99999999999998 89999999999888888899999999999999985       777999999999


Q ss_pred             EEeCCCCceEEEEecC----CCEEEEEE
Q 033738           81 YWDFSTPELLKTIDVK----FPIFSMVR  104 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~----~~v~~~~~  104 (112)
                      +||+++++.+..+..+    ..+.++.+
T Consensus       207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~  234 (420)
T 3vl1_A          207 LWECGTGTTIHTFNRKENPHDGVNSIAL  234 (420)
T ss_dssp             EEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred             EeECCCCceeEEeecCCCCCCCccEEEE
Confidence            9999999988888642    14555544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=3.6e-19  Score=106.79  Aligned_cols=100  Identities=12%  Similarity=0.075  Sum_probs=84.6

Q ss_pred             CCCCCcCCCeEEcC--CCCEEEEEc-CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            4 GGRSYVSSPPAFSN--DVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         4 ~h~~~v~~~~~~~~--~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +|.+.|.+ ++++|  +++.+++++ |+.|++||+++++...... .+...+.+++|+|++.       ++++++.|+.|
T Consensus       123 ~~~~~v~~-~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-------~lasg~~dg~i  194 (343)
T 3lrv_A          123 DSANEIIY-MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-------LLALYSPDGIL  194 (343)
T ss_dssp             CCSSCEEE-EECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-------EEEEECTTSCE
T ss_pred             CCCCCEEE-EEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-------EEEEEcCCCEE
Confidence            45577887 99999  999999998 9999999999887765553 3455789999999995       78899999999


Q ss_pred             EEEeCCCCceE-EEEec-CC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELL-KTIDV-KF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~-~~~~~-~~-~v~~~~~~~~~~~~  111 (112)
                      ++||+++++.+ ..+.. |. +|.+++|+|+|.++
T Consensus       195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l  229 (343)
T 3lrv_A          195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWM  229 (343)
T ss_dssp             EEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEE
T ss_pred             EEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEE
Confidence            99999999887 67776 55 99999999999876

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.81  E-value=5.4e-19  Score=107.45  Aligned_cols=102  Identities=19%  Similarity=0.252  Sum_probs=87.5

Q ss_pred             cCCCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCC-CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            3 RGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTST-GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      .+|...+.+ +++++ +++.+++++ |+.|++||++. ...+..+.+|.+.|.+++|+|++.       ++++++.|+.+
T Consensus       202 ~~h~~~v~~-~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-------~l~s~s~D~~i  273 (380)
T 3iz6_a          202 SGHTADVLS-LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-------RFGTGSDDGTC  273 (380)
T ss_dssp             SSCCSCEEE-EEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-------EEEEECSSSCE
T ss_pred             CCCccCeEE-EEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-------eEEEEcCCCeE
Confidence            568888887 99977 789999998 99999999974 466778889999999999999995       78899999999


Q ss_pred             EEEeCCCCceEEEEecCC--------CEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVKF--------PIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~  112 (112)
                      ++||++++..+..+..+.        .+.+++|+|+|++++
T Consensus       274 ~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  314 (380)
T 3iz6_a          274 RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF  314 (380)
T ss_dssp             EEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE
T ss_pred             EEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEE
Confidence            999999999888775432        388999999998763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.81  E-value=2.8e-19  Score=108.39  Aligned_cols=78  Identities=15%  Similarity=0.172  Sum_probs=70.1

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeee-ccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS-LEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.+|...|.+ ++|+|||++|++|+ |+.|++||+++++.+.. +.+|...|++++|+|++.       ++++++.|++|
T Consensus       265 ~~~~~~~V~~-~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~-------~laS~S~D~tv  336 (365)
T 4h5i_A          265 VTNRFKGITS-MDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDST-------YVASVSAANTI  336 (365)
T ss_dssp             EESSCSCEEE-EEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSC-------EEEEEETTSEE
T ss_pred             ecCCCCCeEe-EEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCC-------EEEEEeCCCeE
Confidence            3568888997 99999999999998 99999999999988876 478999999999999996       88899999999


Q ss_pred             EEEeCCCC
Q 033738           80 KYWDFSTP   87 (112)
Q Consensus        80 ~~~~~~~~   87 (112)
                      ++||+...
T Consensus       337 rvw~ip~~  344 (365)
T 4h5i_A          337 HIIKLPLN  344 (365)
T ss_dssp             EEEECCTT
T ss_pred             EEEEcCCC
Confidence            99998653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.81  E-value=6.5e-19  Score=106.35  Aligned_cols=78  Identities=14%  Similarity=0.238  Sum_probs=71.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCe-EEEEeCCCCceeeecc-c-cCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNT-VSIFSTSTGLQISSLE-G-HTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~-v~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      +.+|.+.|.+ ++|+|+|++|++++ |++ |++||+++++.+..+. + |...|.+++|+|++.       ++++++.|+
T Consensus       191 ~~~h~~~v~~-~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~-------~l~s~s~d~  262 (355)
T 3vu4_A          191 IKAHTNPIKM-VRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS-------KLAVVSDKW  262 (355)
T ss_dssp             ECCCSSCEEE-EEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSC-------EEEEEETTC
T ss_pred             EEccCCceEE-EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCC-------EEEEEECCC
Confidence            5689999998 99999999999999 898 9999999998888887 4 899999999999995       788999999


Q ss_pred             cEEEEeCCCC
Q 033738           78 TIKYWDFSTP   87 (112)
Q Consensus        78 ~i~~~~~~~~   87 (112)
                      .+++||++.+
T Consensus       263 ~v~iw~~~~~  272 (355)
T 3vu4_A          263 TLHVFEIFND  272 (355)
T ss_dssp             EEEEEESSCC
T ss_pred             EEEEEEccCC
Confidence            9999999764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.81  E-value=7.6e-20  Score=110.46  Aligned_cols=100  Identities=14%  Similarity=0.034  Sum_probs=81.4

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC--ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG--LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      .+.+.|.+ ++|+|++++|++++ |+.|++||+.++  +....+..|...|.+++|+|++.       ++++++.|+.++
T Consensus         9 ~~~~~v~~-~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-------~l~s~s~d~~v~   80 (377)
T 3dwl_C            9 ILPKPSYE-HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN-------RIVTCSQDRNAY   80 (377)
T ss_dssp             ECSSCCSC-CEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC-------CEEEEETTSSEE
T ss_pred             cCCCcEEE-EEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC-------EEEEEeCCCeEE
Confidence            35678998 99999999999997 999999999887  66778889999999999999985       777999999999


Q ss_pred             EEeCCCCc---eEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPE---LLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~---~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||+.++.   ....+..+. .+.+++|+|+++.+
T Consensus        81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  115 (377)
T 3dwl_C           81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKF  115 (377)
T ss_dssp             EC------CCCCEEECCCCSSCEEEEECCTTSSCC
T ss_pred             EEEcCCCCceeeeeEecccCCceEEEEECCCCCEE
Confidence            99999876   455555555 99999999998765

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.81  E-value=1.9e-18  Score=102.80  Aligned_cols=102  Identities=17%  Similarity=0.337  Sum_probs=85.7

Q ss_pred             ccCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCc-----eeeeccccCCceEEEEEecCCCCccceeEEEEeee
Q 033738            2 IRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGL-----QISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS   74 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   74 (112)
                      |+||.+.|.+ ++|+|+ +++|++++ |+.|++||+.+.+     ....+.+|...|.+++|+|++.       ++++++
T Consensus        34 L~GH~~~V~~-v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~-------~l~s~~  105 (340)
T 4aow_A           34 LKGHNGWVTQ-IATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ-------FALSGS  105 (340)
T ss_dssp             ECCCSSCEEE-EEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS-------EEEEEE
T ss_pred             ECCccCCEEE-EEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC-------EEEEEc
Confidence            6899999998 999998 58999998 9999999987543     3456778999999999999995       788999


Q ss_pred             cCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           75 LDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        75 ~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .|+.+++|+...+........+. .+....++++++.+
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  143 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI  143 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             ccccceEEeecccceeeeecCCCCceeEEEEeecCccc
Confidence            99999999999887776666555 77777788777654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.81  E-value=7.9e-19  Score=107.13  Aligned_cols=102  Identities=15%  Similarity=0.155  Sum_probs=89.8

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeec--cccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSL--EGHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      +.+|...|.+ ++|+|++ +.|++++ |+.|++||+.+++....+  ..|...+.+++|+|++.       ++++++.|+
T Consensus       127 ~~~h~~~v~~-~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~  198 (402)
T 2aq5_A          127 LEGHTKRVGI-VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-------LICTSCRDK  198 (402)
T ss_dssp             EECCSSCEEE-EEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS-------CEEEEETTS
T ss_pred             ecCCCCeEEE-EEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC-------EEEEEecCC
Confidence            4678999998 9999998 6888888 999999999999888888  78999999999999985       677999999


Q ss_pred             cEEEEeCCCCceEEEE-ecCC--CEEEEEEcCCCcEe
Q 033738           78 TIKYWDFSTPELLKTI-DVKF--PIFSMVRGKKGFAV  111 (112)
Q Consensus        78 ~i~~~~~~~~~~~~~~-~~~~--~v~~~~~~~~~~~~  111 (112)
                      .+++||+++++.+..+ ..+.  .+..+.|+|+++++
T Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (402)
T 2aq5_A          199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL  235 (402)
T ss_dssp             EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred             cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence            9999999999988888 4554  48899999998876

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.81  E-value=1.3e-18  Score=104.43  Aligned_cols=106  Identities=13%  Similarity=0.058  Sum_probs=78.6

Q ss_pred             cCCCCCcCCCeEEcC---CCCEEEEEc-CCeEEEEeCCCCceeeeccccCC---ceEEEEEecCCCCccce---------
Q 033738            3 RGGRSYVSSPPAFSN---DVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTA---PVTTVIVVPASTPATKI---------   66 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~---~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~---------   66 (112)
                      .+|...+.. ++|+|   ++..|++++ |++|++||+++++.+..+.++..   .+.+++|+|++.   .+         
T Consensus       175 ~~~~~~v~~-l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~---~lvs~s~~~~~  250 (356)
T 2w18_A          175 FLMPPEETI-LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL---LFIVLSHPCAK  250 (356)
T ss_dssp             EECCCSSCE-EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE---EEEEEC-----
T ss_pred             ccCCCceee-EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC---EEEEeccCCCc
Confidence            356666766 77877   668899988 99999999999998888875432   345556666552   11         


Q ss_pred             --------------------------------------eE------EEEeeecCCcEEEEeCCCCceEEEEecCC-CEE-
Q 033738           67 --------------------------------------LS------YCWTASLDETIKYWDFSTPELLKTIDVKF-PIF-  100 (112)
Q Consensus        67 --------------------------------------~~------~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~-  100 (112)
                                                            +.      ++++++.|++|++||+.+++++.++..|. .+. 
T Consensus       251 w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs  330 (356)
T 2w18_A          251 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS  330 (356)
T ss_dssp             -------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC
T ss_pred             ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE
Confidence                                                  00      25677889999999999999999998765 444 


Q ss_pred             EEEEcCCCcEeC
Q 033738          101 SMVRGKKGFAVF  112 (112)
Q Consensus       101 ~~~~~~~~~~~~  112 (112)
                      +++|+|+|++|+
T Consensus       331 ~vafSPDG~~La  342 (356)
T 2w18_A          331 FVKWSGTDSHLL  342 (356)
T ss_dssp             EEEECSSSSEEE
T ss_pred             EEEECCCCCEEE
Confidence            589999999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.81  E-value=1.9e-19  Score=108.75  Aligned_cols=102  Identities=14%  Similarity=0.127  Sum_probs=80.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc---eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL---QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      +.+|.+.|.+ ++|+|++++|++++ |+.|++||+.+++   ....+..|...+.+++|+|++.       ++++++.|+
T Consensus        51 ~~~h~~~v~~-~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~  122 (377)
T 3dwl_C           51 FSDHDKIVTC-VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED-------KFAVGSGAR  122 (377)
T ss_dssp             BCCCSSCEEE-EEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS-------CCEEEESSS
T ss_pred             EecCCceEEE-EEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC-------EEEEEecCC
Confidence            5789999998 99999999999998 9999999998876   5566778999999999999985       667999999


Q ss_pred             cEEEEeCCCCc---eEEEEec-CC-CEEEEEEcCCCcEe
Q 033738           78 TIKYWDFSTPE---LLKTIDV-KF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        78 ~i~~~~~~~~~---~~~~~~~-~~-~v~~~~~~~~~~~~  111 (112)
                      .+++||+++++   ....+.. +. .+.+++|+|+++++
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C          123 VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            99999999876   3666665 44 99999999999876

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.81  E-value=7.6e-19  Score=111.32  Aligned_cols=100  Identities=13%  Similarity=0.129  Sum_probs=90.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc-cCCceEEEEEec----------CCCCccceeEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG-HTAPVTTVIVVP----------ASTPATKILSY   69 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~~~~~~~~   69 (112)
                      +.+|...+.+ ++|+|++++|++++ |+.|++||+.+++.+..+.. |...+.+++|+|          ++.       +
T Consensus       484 ~~~~~~~v~~-~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~-------~  555 (615)
T 1pgu_A          484 KTPLRAKPSY-ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED-------L  555 (615)
T ss_dssp             SSCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC-------E
T ss_pred             cCCccCceEE-EEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCC-------E
Confidence            4678889998 99999999999998 89999999999988888887 999999999999          885       7


Q ss_pred             EEeeecCCcEEEEeCCCC-ceEEEEecCC-CEEEEEEcCCCc
Q 033738           70 CWTASLDETIKYWDFSTP-ELLKTIDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        70 ~~~~~~d~~i~~~~~~~~-~~~~~~~~~~-~v~~~~~~~~~~  109 (112)
                      +++++.|+.|++||+.++ +++..+..|. .|.+++|+|+++
T Consensus       556 l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  597 (615)
T 1pgu_A          556 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST  597 (615)
T ss_dssp             EEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE
T ss_pred             EEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC
Confidence            789999999999999987 6777777766 999999999997

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.81  E-value=1.6e-18  Score=104.16  Aligned_cols=103  Identities=18%  Similarity=0.168  Sum_probs=88.5

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc--eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL--QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      ++.|.+.|.+ ++|+|+++.+++++ |+.|++||+.+++  ....+..|...+.+++|+|++.       ++++++.|+.
T Consensus         4 ~~~~~~~i~~-~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~~~~~dg~   75 (372)
T 1k8k_C            4 HSFLVEPISC-HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN-------RIVTCGTDRN   75 (372)
T ss_dssp             EESCSSCCCE-EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT-------EEEEEETTSC
T ss_pred             ecccCCCeEE-EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCC-------EEEEEcCCCe
Confidence            4568899998 99999999999997 9999999998876  6788888999999999999985       7779999999


Q ss_pred             EEEEeCCCCceEEEEe--cCC-CEEEEEEcCCCcEeC
Q 033738           79 IKYWDFSTPELLKTID--VKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~--~~~-~v~~~~~~~~~~~~~  112 (112)
                      +++||+.+++......  .+. .+.+++|+|++++++
T Consensus        76 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  112 (372)
T 1k8k_C           76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA  112 (372)
T ss_dssp             EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEE
T ss_pred             EEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEE
Confidence            9999998887555543  333 899999999998763

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.81  E-value=2.6e-18  Score=101.91  Aligned_cols=102  Identities=22%  Similarity=0.369  Sum_probs=91.8

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|...+.+ ++|+|+++.+++++ |+.|++||+++++....+..|...+.+++|+|++.       ++++++.|+.++
T Consensus       137 ~~~~~~~i~~-~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~  208 (337)
T 1gxr_A          137 LTSSAPACYA-LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-------KLWTGGLDNTVR  208 (337)
T ss_dssp             EECSSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-------EEEEEETTSEEE
T ss_pred             cccCCCceEE-EEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC-------EEEEEecCCcEE
Confidence            3467778887 99999999999998 89999999999988888888999999999999985       777999999999


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +||+++++.+..+.....+.+++|+|+++.+
T Consensus       209 ~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l  239 (337)
T 1gxr_A          209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWL  239 (337)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             EEECCCCceEeeecCCCceEEEEECCCCCEE
Confidence            9999999988888877799999999999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.81  E-value=1.3e-18  Score=106.21  Aligned_cols=104  Identities=21%  Similarity=0.326  Sum_probs=91.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee--cCCc
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS--LDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~d~~   78 (112)
                      +.+|.+.|.+ ++|+|+++.+++++ |+.|++||+.+++....+..|...+.+++|+|++.      .++++++  .|+.
T Consensus       213 ~~~~~~~v~~-~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~------~ll~~~~gs~d~~  285 (401)
T 4aez_A          213 LQGHSSEVCG-LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS------NLLATGGGTMDKQ  285 (401)
T ss_dssp             EECCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST------TEEEEECCTTTCE
T ss_pred             EcCCCCCeeE-EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC------CEEEEecCCCCCE
Confidence            4578889998 99999999999998 89999999999888888888999999999999874      2444654  7999


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      +++||+.+++++..+..+..+.+++|+|+++.++
T Consensus       286 i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  319 (401)
T 4aez_A          286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIM  319 (401)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEE
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEE
Confidence            9999999999999988777999999999998763

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.81  E-value=1.7e-18  Score=103.67  Aligned_cols=100  Identities=17%  Similarity=0.231  Sum_probs=87.6

Q ss_pred             CCCCcCCCeEEcCC----CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEec-CCCCccceeEEEEeeecCCc
Q 033738            5 GRSYVSSPPAFSND----VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP-ASTPATKILSYCWTASLDET   78 (112)
Q Consensus         5 h~~~v~~~~~~~~~----~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~d~~   78 (112)
                      |...+.+ ++|+|+    +++|++++ |+.|++||+.+++.+..+..|...|.+++|+| ++.       ++++++.|+.
T Consensus        68 ~~~~v~~-~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~l~s~~~dg~  139 (366)
T 3k26_A           68 ADENFYT-CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN-------LLLSVSKDHA  139 (366)
T ss_dssp             TTCCEEE-EEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT-------EEEEEETTSC
T ss_pred             CCCcEEE-EEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC-------EEEEEeCCCe
Confidence            5677887 999999    66888888 89999999999988888889999999999999 664       7779999999


Q ss_pred             EEEEeCCCCceEEEE---ecCC-CEEEEEEcCCCcEeC
Q 033738           79 IKYWDFSTPELLKTI---DVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        79 i~~~~~~~~~~~~~~---~~~~-~v~~~~~~~~~~~~~  112 (112)
                      |++||+++++.+..+   ..+. .+.+++|+|+++.++
T Consensus       140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  177 (366)
T 3k26_A          140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM  177 (366)
T ss_dssp             EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEE
Confidence            999999999988887   3444 999999999998763

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.81  E-value=1.3e-18  Score=117.72  Aligned_cols=100  Identities=25%  Similarity=0.374  Sum_probs=92.1

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|.+.|.+ ++|+|+|+++++++ |+.|++||..+++.+..+.+|...|.+++|+|++.       ++++++.|+.++
T Consensus       611 ~~~h~~~v~~-~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~-------~l~s~~~d~~v~  682 (1249)
T 3sfz_A          611 VRPHTDAVYH-ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS-------YIATCSADKKVK  682 (1249)
T ss_dssp             ECCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-------EEEEEETTSEEE
T ss_pred             EecccccEEE-EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCC-------EEEEEeCCCeEE
Confidence            4689999998 99999999999998 89999999999998899999999999999999995       788999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCc
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~  109 (112)
                      +||+.+++.+..+..+. .+.+++|+|+++
T Consensus       683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  712 (1249)
T 3sfz_A          683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSN  712 (1249)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred             EEECCCCceEEEEcCCCCcEEEEEEecCCC
Confidence            99999999999998877 999999999543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.80  E-value=3.6e-18  Score=104.92  Aligned_cols=102  Identities=16%  Similarity=0.159  Sum_probs=86.2

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCC-Cceee-------eccccCCceEEEEEecCC-CCccceeEEEEee
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTST-GLQIS-------SLEGHTAPVTTVIVVPAS-TPATKILSYCWTA   73 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~   73 (112)
                      .+|...|.+ ++|+|+++.|+++.|+.|++||++. ++...       .+..|...|.+++|+|++ .       +++++
T Consensus       174 ~~h~~~v~~-~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-------~l~s~  245 (447)
T 3dw8_B          174 NAHTYHINS-ISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-------TFVYS  245 (447)
T ss_dssp             SCCSSCCCE-EEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-------EEEEE
T ss_pred             cCCCcceEE-EEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-------EEEEE
Confidence            579999998 9999999999998889999999984 33333       356788999999999997 4       77899


Q ss_pred             ecCCcEEEEeCCCCce----EEEEecCC-------------CEEEEEEcCCCcEeC
Q 033738           74 SLDETIKYWDFSTPEL----LKTIDVKF-------------PIFSMVRGKKGFAVF  112 (112)
Q Consensus        74 ~~d~~i~~~~~~~~~~----~~~~~~~~-------------~v~~~~~~~~~~~~~  112 (112)
                      +.|+.|++||+++++.    +..+..+.             .+.+++|+|+|++++
T Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  301 (447)
T 3dw8_B          246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM  301 (447)
T ss_dssp             ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEE
T ss_pred             eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEE
Confidence            9999999999998876    67776654             799999999998763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.79  E-value=3.7e-18  Score=104.28  Aligned_cols=93  Identities=15%  Similarity=0.234  Sum_probs=84.3

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK   91 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~   91 (112)
                      ..++|+++.|++++ |+.|++||+.+++....+..|...|.+++|+|++.       ++++++.|+.+++||+.+++.+.
T Consensus       103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~s~s~d~~i~iwd~~~~~~~~  175 (420)
T 3vl1_A          103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGE-------ALISSSQDMQLKIWSVKDGSNPR  175 (420)
T ss_dssp             EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSS-------EEEEEETTSEEEEEETTTCCCCE
T ss_pred             EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCC-------EEEEEeCCCeEEEEeCCCCcCce
Confidence            57899999999998 89999999998887788889999999999999985       77899999999999999999988


Q ss_pred             EEecCC-CEEEEEEcCCCcEeC
Q 033738           92 TIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        92 ~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      .+..+. .+.+++|+|+++.++
T Consensus       176 ~~~~h~~~v~~~~~~~~~~~l~  197 (420)
T 3vl1_A          176 TLIGHRATVTDIAIIDRGRNVL  197 (420)
T ss_dssp             EEECCSSCEEEEEEETTTTEEE
T ss_pred             EEcCCCCcEEEEEEcCCCCEEE
Confidence            888776 999999999998763

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.79  E-value=8.5e-19  Score=114.39  Aligned_cols=103  Identities=21%  Similarity=0.283  Sum_probs=86.0

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC--CCceeeeccccCCceEEEEEecC--CCCccceeEEEEeeec
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS--TGLQISSLEGHTAPVTTVIVVPA--STPATKILSYCWTASL   75 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~   75 (112)
                      ++.+|.+.|.+ ++|+|+++.+++++ |+.|++||+.  +++....+.+|.+.|.+++|+|+  +.       ++++++.
T Consensus         4 ~l~gH~~~V~~-l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~-------~l~s~s~   75 (753)
T 3jro_A            4 IANAHNELIHD-AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-------ILASCSY   75 (753)
T ss_dssp             ----CCCCEEE-ECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS-------EEEEEET
T ss_pred             ecccCcceeEE-EEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC-------EEEEEeC
Confidence            46899999998 99999999999998 9999999987  45666788889999999999987  64       7789999


Q ss_pred             CCcEEEEeCCCCc--eEEEEecCC-CEEEEEEcCC--CcEe
Q 033738           76 DETIKYWDFSTPE--LLKTIDVKF-PIFSMVRGKK--GFAV  111 (112)
Q Consensus        76 d~~i~~~~~~~~~--~~~~~~~~~-~v~~~~~~~~--~~~~  111 (112)
                      |+.|++||+.++.  .+..+..+. .+.+++|+|+  ++.+
T Consensus        76 Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l  116 (753)
T 3jro_A           76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL  116 (753)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEE
Confidence            9999999999886  555666555 9999999998  7655

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.79  E-value=3.4e-18  Score=110.50  Aligned_cols=101  Identities=25%  Similarity=0.426  Sum_probs=90.8

Q ss_pred             cCCCCCcCCCeEEcCCC--CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            3 RGGRSYVSSPPAFSNDV--KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~--~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      .+|...|.+ ++|+|++  ..+++++ |+.|++||+++++....+.+|.+.|.+++|+|++.       ++++++.|+.|
T Consensus       514 ~~h~~~v~~-~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-------~l~sg~~Dg~i  585 (694)
T 3dm0_A          514 EGHRDWVSC-VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-------LCASGGKDGVV  585 (694)
T ss_dssp             TSCSSCEEE-EEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-------EEEEEETTSBC
T ss_pred             CCCCCcEEE-EEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-------EEEEEeCCCeE
Confidence            468888998 9999987  5788888 99999999999888888899999999999999995       78899999999


Q ss_pred             EEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ++||+++++.+..+..+..+.+++|+|++..+
T Consensus       586 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l  617 (694)
T 3dm0_A          586 LLWDLAEGKKLYSLEANSVIHALCFSPNRYWL  617 (694)
T ss_dssp             EEEETTTTEEEECCBCSSCEEEEEECSSSSEE
T ss_pred             EEEECCCCceEEEecCCCcEEEEEEcCCCcEE
Confidence            99999999988888777799999999998765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.79  E-value=5.7e-18  Score=102.73  Aligned_cols=95  Identities=24%  Similarity=0.349  Sum_probs=87.2

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-C---CeEEEEeCCCCceeeeccc-------------cCCceEEEEEecCCCCccceeE
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEG-------------HTAPVTTVIVVPASTPATKILS   68 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~---~~v~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~   68 (112)
                      ...+.+ ++|+|+++.|++++ |   +.|++||+.+++.+..+..             |...+.+++|+|++.       
T Consensus       233 ~~~i~~-i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------  304 (397)
T 1sq9_A          233 SNSIRS-VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-------  304 (397)
T ss_dssp             CCCEEE-EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-------
T ss_pred             CCccce-EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC-------
Confidence            888887 99999999999998 8   9999999999888888887             899999999999995       


Q ss_pred             EEEeeecCCcEEEEeCCCCceEEEEe------cC---------------C-CEEEEEEcCCC
Q 033738           69 YCWTASLDETIKYWDFSTPELLKTID------VK---------------F-PIFSMVRGKKG  108 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~~~~~------~~---------------~-~v~~~~~~~~~  108 (112)
                      ++++++.|+.+++||+++++++..+.      .+               . .+.+++|+|+|
T Consensus       305 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          305 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             EEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            77899999999999999999999988      55               4 89999999998

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.79  E-value=6.2e-18  Score=101.65  Aligned_cols=101  Identities=18%  Similarity=0.069  Sum_probs=89.6

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC------------------CCceeeeccccCCceEEEEEecCCCCc
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS------------------TGLQISSLEGHTAPVTTVIVVPASTPA   63 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~   63 (112)
                      .+|...+.+ ++|+|+++.+++++ |+.+++||+.                  .++.+..+..|...+.+++|+|++.  
T Consensus       139 ~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--  215 (372)
T 1k8k_C          139 KPIRSTVLS-LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS--  215 (372)
T ss_dssp             TTCCSCEEE-EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS--
T ss_pred             cccCCCeeE-EEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC--
Confidence            457888887 99999999999998 9999999953                  5667778888999999999999985  


Q ss_pred             cceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           64 TKILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        64 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                           ++++++.|+.+++||+++++++..+..+. ++.+++|+|++.++
T Consensus       216 -----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  259 (372)
T 1k8k_C          216 -----RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV  259 (372)
T ss_dssp             -----EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEE
T ss_pred             -----EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEE
Confidence                 77799999999999999999999988876 99999999999865

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.79  E-value=4e-19  Score=112.16  Aligned_cols=102  Identities=11%  Similarity=0.009  Sum_probs=85.6

Q ss_pred             ccCCCCCcCCCe--EEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCC--ceEEEEEecCCCCccceeEEEEeeec
Q 033738            2 IRGGRSYVSSPP--AFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTA--PVTTVIVVPASTPATKILSYCWTASL   75 (112)
Q Consensus         2 ~~~h~~~v~~~~--~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~   75 (112)
                      +.+|...|.+ +  .++|+| +.|++++ |++|++||+++++....+.+|..  .+.+++|+|++.       .+++++.
T Consensus       304 ~~~H~~~V~s-v~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~-------~l~s~~~  375 (524)
T 2j04_B          304 DQVHDSYILS-VSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY-------SYIYSDG  375 (524)
T ss_dssp             EECSSSCEEE-EEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT-------EEEEECS
T ss_pred             eecccccEEE-EEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC-------eEEEeCC
Confidence            4679999987 8  568888 8999998 99999999988776655655543  478899999985       5678999


Q ss_pred             CCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           76 DETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        76 d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      |+.+++||++++.++..+..|. .|.+++|+|+|+.+
T Consensus       376 d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l  412 (524)
T 2j04_B          376 ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMV  412 (524)
T ss_dssp             SSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBC
T ss_pred             CCcEEEEECcccccceeeecCCCceEEEEeCCCCCeE
Confidence            9999999999998877777776 99999999999865

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.79  E-value=1.4e-17  Score=98.82  Aligned_cols=100  Identities=18%  Similarity=0.298  Sum_probs=87.8

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc--eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL--QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +|...+.+ ++|+|+++.+++++ |+.|++||+.+++  ....+..+...+.+++|+|++.       ++++++.|+.++
T Consensus        95 ~~~~~v~~-~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~v~  166 (337)
T 1gxr_A           95 NRDNYIRS-CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-------VCFSCCSDGNIA  166 (337)
T ss_dssp             CTTSBEEE-EEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-------EEEEEETTSCEE
T ss_pred             CCCCcEEE-EEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC-------EEEEEeCCCcEE
Confidence            67888887 99999999999998 8999999998876  4556777888999999999985       777999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||+++++.+..+..+. .+.+++|+|+++.+
T Consensus       167 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  198 (337)
T 1gxr_A          167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKL  198 (337)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EEeCCCCceeeeeecccCceEEEEECCCCCEE
Confidence            99999999888888766 89999999999876

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.79  E-value=5.3e-18  Score=100.10  Aligned_cols=103  Identities=20%  Similarity=0.240  Sum_probs=81.4

Q ss_pred             ccCCCCCcCCCeEEcCC-------------CCEEEEEc-CCeEEEEeCCCCc----eeeeccccCCceEEEEEecCC--C
Q 033738            2 IRGGRSYVSSPPAFSND-------------VKRLLVCT-SNTVSIFSTSTGL----QISSLEGHTAPVTTVIVVPAS--T   61 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~-------------~~~l~~~~-~~~v~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~--~   61 (112)
                      +.+|...|.+ ++|+|+             ++.|++++ |+.|++||+++++    ....+.+|...|.+++|+|++  .
T Consensus       141 ~~~h~~~v~~-~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~  219 (297)
T 2pm7_B          141 IDAHAIGVNS-ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  219 (297)
T ss_dssp             EECCSSCEEE-EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             eecccCccce-EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence            3578888887 999997             56899998 9999999987654    456778899999999999985  2


Q ss_pred             CccceeEEEEeeecCCcEEEEeCCCCc--e-EEEE--ecC-CCEEEEEEcCCCcEe
Q 033738           62 PATKILSYCWTASLDETIKYWDFSTPE--L-LKTI--DVK-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        62 ~~~~~~~~~~~~~~d~~i~~~~~~~~~--~-~~~~--~~~-~~v~~~~~~~~~~~~  111 (112)
                            .++++++.|+.+++||++++.  . ...+  ..+ ..+.+++|+|+|++|
T Consensus       220 ------~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  269 (297)
T 2pm7_B          220 ------SYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL  269 (297)
T ss_dssp             ------EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred             ------eEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEE
Confidence                  377899999999999987643  1 1222  222 389999999999876

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.78  E-value=1.6e-18  Score=106.87  Aligned_cols=100  Identities=13%  Similarity=0.072  Sum_probs=78.6

Q ss_pred             CCCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCCce--eeeccccCCceEEEEEecC-CCCccceeEEEEeeecCCc
Q 033738            4 GGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPA-STPATKILSYCWTASLDET   78 (112)
Q Consensus         4 ~h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~d~~   78 (112)
                      +|...|.+ ++|+| ++++|++|+ ||.|++||+.++..  ...+.+|.+.|.+++|+|. +.       ++++++.|+.
T Consensus       117 ~~~~~V~~-l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~-------~l~s~s~D~~  188 (435)
T 4e54_B          117 PFDRRATS-LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN-------QFYASSMEGT  188 (435)
T ss_dssp             ECSSCEEE-EEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT-------EEEEECSSSC
T ss_pred             CCCCCEEE-EEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC-------EEEEEeCCCE
Confidence            57778998 99999 567899998 99999999977643  3455679999999999984 53       6779999999


Q ss_pred             EEEEeCCCCceEEEEecCC---CEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDVKF---PIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~  111 (112)
                      |++||++.+........+.   .+.+++|+|+++++
T Consensus       189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  224 (435)
T 4e54_B          189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMV  224 (435)
T ss_dssp             EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEE
T ss_pred             EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEE
Confidence            9999998654433333222   57889999998876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.78  E-value=8.2e-18  Score=113.81  Aligned_cols=104  Identities=21%  Similarity=0.241  Sum_probs=93.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +++|.+.|.+ ++|+|+++++++++ |+.|++||+.+++.+..+..|...+.+++|+|++.  .   .++++++.|+.++
T Consensus       653 ~~~h~~~v~~-~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~---~~l~sg~~d~~v~  726 (1249)
T 3sfz_A          653 IKAHEDEVLC-CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN--H---LLLATGSNDFFLK  726 (1249)
T ss_dssp             ECCCSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS--C---CEEEEEETTSCEE
T ss_pred             eccCCCCEEE-EEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCC--c---eEEEEEeCCCeEE
Confidence            4679999998 99999999999998 89999999999998999999999999999999642  1   2567999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||+.+++++..+..+. .+.+++|+|+++.+
T Consensus       727 vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l  758 (1249)
T 3sfz_A          727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELL  758 (1249)
T ss_dssp             EEETTSSSEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             EEECCCcchhheecCCCCCEEEEEEecCCCEE
Confidence            99999999999888777 99999999999876

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.78  E-value=6.7e-18  Score=106.83  Aligned_cols=94  Identities=12%  Similarity=0.086  Sum_probs=78.1

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCC-----ceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTA-----PVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      +|...|.+ ++|||||+.|++++ |+.|++||.+.  .+..+. |..     .+.+++|||++.       ++++++.||
T Consensus        83 ~~~~~V~~-vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~-------~LAsgs~DG  151 (588)
T 2j04_A           83 QPVCYPRV-CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIES-------SIVVGNEDG  151 (588)
T ss_dssp             SCSCCEEE-EEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSS-------CEEEEETTS
T ss_pred             CCCCcEEE-EEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCC-------EEEEEcCCC
Confidence            45778887 99999999999998 99999999654  556666 555     499999999996       788999999


Q ss_pred             cEEEEeCCCCc-------eEEEEe----cCC-CEEEEEEcCCC
Q 033738           78 TIKYWDFSTPE-------LLKTID----VKF-PIFSMVRGKKG  108 (112)
Q Consensus        78 ~i~~~~~~~~~-------~~~~~~----~~~-~v~~~~~~~~~  108 (112)
                      ++++||+.++.       .+.++.    .|. +|.+++|+|+|
T Consensus       152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg  194 (588)
T 2j04_A          152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV  194 (588)
T ss_dssp             EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE
T ss_pred             EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc
Confidence            99999999875       356653    233 99999999998

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.1e-17  Score=98.45  Aligned_cols=97  Identities=20%  Similarity=0.320  Sum_probs=87.0

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      |...+.+ ++|+|++. +++++ |+.|++||+++++.+..+..|...+.+++|+|++        .+++++.|+.+++||
T Consensus       183 ~~~~i~~-~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------~l~~~~~dg~v~iwd  252 (313)
T 3odt_A          183 HNDVVRH-LAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG--------DIVSCGEDRTVRIWS  252 (313)
T ss_dssp             CSSCEEE-EEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS--------CEEEEETTSEEEEEC
T ss_pred             CcccEEE-EEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC--------CEEEEecCCEEEEEE
Confidence            7778887 99999998 66776 9999999999998888999999999999999998        356899999999999


Q ss_pred             CCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           84 FSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        84 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +++++.+..+..+. .+.+++|+|+++++
T Consensus       253 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  281 (313)
T 3odt_A          253 KENGSLKQVITLPAISIWSVDCMSNGDII  281 (313)
T ss_dssp             TTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred             CCCCceeEEEeccCceEEEEEEccCCCEE
Confidence            99999999988877 99999999999754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.78  E-value=1.3e-18  Score=106.28  Aligned_cols=82  Identities=12%  Similarity=0.135  Sum_probs=71.1

Q ss_pred             ccCCCCCcCCCeEEcC--------CCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEe
Q 033738            2 IRGGRSYVSSPPAFSN--------DVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT   72 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~--------~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   72 (112)
                      +.||.+.|.+ ++|+|        |++.|++++ |++|++||+.++.....+..|...+.+++|+|++.      .++++
T Consensus       132 ~~gH~~~v~~-v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~------~~l~~  204 (393)
T 4gq1_A          132 KSGHHNFVND-IDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNP------NQLIV  204 (393)
T ss_dssp             TTSCSSCEEE-EEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEE------EEEEE
T ss_pred             cCCCCCceEE-EEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCC------ceEEe
Confidence            6789999998 99998        889999999 99999999988777777778889999999999874      36779


Q ss_pred             eecCCcEEEEeCCCCceE
Q 033738           73 ASLDETIKYWDFSTPELL   90 (112)
Q Consensus        73 ~~~d~~i~~~~~~~~~~~   90 (112)
                      ++.|+.+++||+++++..
T Consensus       205 ~~~d~~v~~wd~~t~~~~  222 (393)
T 4gq1_A          205 GERNGNIRIFDWTLNLSA  222 (393)
T ss_dssp             EETTSEEEEEETTCCC--
T ss_pred             cCCCCEEEEEECCCCccc
Confidence            999999999999877543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.78  E-value=8.7e-18  Score=111.53  Aligned_cols=100  Identities=17%  Similarity=0.132  Sum_probs=87.0

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .||.+.|.+ ++|+|++++|++|+ |+.|++|+....+....+ .+...|.+++|+| +.       ++++++.|+.|++
T Consensus        14 ~gh~~~V~~-lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~-------~L~S~s~D~~v~l   83 (902)
T 2oaj_A           14 YGMSSKPIA-AAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GI-------YLVVINAKDTVYV   83 (902)
T ss_dssp             EECSSCEEE-EEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TT-------EEEEEETTCEEEE
T ss_pred             cCCCCCcEE-EEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CC-------EEEEEECcCeEEE
Confidence            478899998 99999999999998 999999998876654444 3678899999999 64       6779999999999


Q ss_pred             EeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      ||+.+++++..+..+..|.+++|+|++++++
T Consensus        84 Wd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~  114 (902)
T 2oaj_A           84 LSLYSQKVLTTVFVPGKITSIDTDASLDWML  114 (902)
T ss_dssp             EETTTCSEEEEEECSSCEEEEECCTTCSEEE
T ss_pred             EECCCCcEEEEEcCCCCEEEEEECCCCCEEE
Confidence            9999999988887666999999999998763

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.78  E-value=1.1e-17  Score=105.94  Aligned_cols=101  Identities=16%  Similarity=0.280  Sum_probs=88.5

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCC----ceeeeccccCCc-eEEEEEec--CCCCccceeEEEEeeec
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTG----LQISSLEGHTAP-VTTVIVVP--ASTPATKILSYCWTASL   75 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~~~~~~~~~~~~~~   75 (112)
                      ..|.+.+.+ ++|+|+|+++++++++.+++||+.++    +....+.+|... |.+++|+|  ++.       ++++++.
T Consensus        15 ~~~~~~v~~-~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-------~l~s~~~   86 (615)
T 1pgu_A           15 STQRNFTTH-LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-------YLCSGDE   86 (615)
T ss_dssp             CCCTTCCCC-CEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-------EEEEEET
T ss_pred             CCccCceeE-EEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-------EEEEecC
Confidence            357888998 99999999999999999999999988    778889999999 99999999  985       7889999


Q ss_pred             CCcEEEEeCCCC--------ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           76 DETIKYWDFSTP--------ELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        76 d~~i~~~~~~~~--------~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      |+.+++||+.++        .....+..+. .+.+++|+|+++++
T Consensus        87 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  131 (615)
T 1pgu_A           87 SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL  131 (615)
T ss_dssp             TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEE
Confidence            999999999754        5566666555 99999999999876

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.5e-17  Score=101.20  Aligned_cols=102  Identities=22%  Similarity=0.323  Sum_probs=91.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|...+.+ ++|+|+++.|++++ |+.|++||+.+++....+..|...+.+++|+|++        ++++++.|+.++
T Consensus       243 ~~~~~~~i~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------~l~~~~~d~~i~  313 (425)
T 1r5m_A          243 LIGHHGPISV-LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--------KVISCSMDGSVR  313 (425)
T ss_dssp             ECCCSSCEEE-EEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--------EEEEEETTSEEE
T ss_pred             eccCCCceEE-EEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--------EEEEEeCCCcEE
Confidence            3568888887 99999999999998 8999999999888888888899999999999987        667999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      +||+++++.+..+..+. .+.+++|+|++++++
T Consensus       314 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  346 (425)
T 1r5m_A          314 LWSLKQNTLLALSIVDGVPIFAGRISQDGQKYA  346 (425)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEEECTTSSEEE
T ss_pred             EEECCCCcEeEecccCCccEEEEEEcCCCCEEE
Confidence            99999999988888766 999999999998763

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.77  E-value=2.3e-17  Score=100.09  Aligned_cols=101  Identities=16%  Similarity=0.126  Sum_probs=88.8

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc---c---CCceEEEEEecCCCCccceeEEEEeeec
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG---H---TAPVTTVIVVPASTPATKILSYCWTASL   75 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~   75 (112)
                      ..|...+.+ ++|+|++ .+++++ |+.|++||+++++.+..+..   |   ...+.+++|+|++.       ++++++.
T Consensus       183 ~~~~~~i~~-~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-------~l~~~~~  253 (397)
T 1sq9_A          183 MTPSQFATS-VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-------LLAIAHD  253 (397)
T ss_dssp             SSSCCCCCE-EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-------EEEEEEE
T ss_pred             cCCCCCceE-EEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC-------EEEEEec
Confidence            347788887 9999999 999998 89999999999888888887   8   89999999999985       7779999


Q ss_pred             C---CcEEEEeCCCCceEEEEec-------------CC-CEEEEEEcCCCcEeC
Q 033738           76 D---ETIKYWDFSTPELLKTIDV-------------KF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        76 d---~~i~~~~~~~~~~~~~~~~-------------~~-~v~~~~~~~~~~~~~  112 (112)
                      |   +.+++||+++++.+..+..             +. .+.+++|+|++++++
T Consensus       254 d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  307 (397)
T 1sq9_A          254 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  307 (397)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence            9   9999999999999888876             55 899999999998763

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.77  E-value=4e-18  Score=113.10  Aligned_cols=101  Identities=10%  Similarity=0.116  Sum_probs=82.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCcee--eec----c-----ccCCceEEEEEecCCCCccceeEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI--SSL----E-----GHTAPVTTVIVVPASTPATKILSY   69 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~--~~~----~-----~~~~~v~~~~~~~~~~~~~~~~~~   69 (112)
                      +.||...+.. ++|+|+++.|++++ |++|++||+.++...  ..+    .     +|...|.+++|+|++.       +
T Consensus       431 l~G~~~~v~s-v~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-------~  502 (902)
T 2oaj_A          431 LKGGVRTKRQ-KLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL-------E  502 (902)
T ss_dssp             CCCSBCCCCC-CCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-------E
T ss_pred             ccCCcCCCCc-ccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC-------e
Confidence            5778888886 99999999999999 999999999876421  111    1     6788999999999996       7


Q ss_pred             EEeeecCCcEEEEeCCCCc---------------------------------------------eEEEEecCC-CEEEEE
Q 033738           70 CWTASLDETIKYWDFSTPE---------------------------------------------LLKTIDVKF-PIFSMV  103 (112)
Q Consensus        70 ~~~~~~d~~i~~~~~~~~~---------------------------------------------~~~~~~~~~-~v~~~~  103 (112)
                      +++++.|++|++||+.+++                                             ++..+..|. .|++++
T Consensus       503 LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sva  582 (902)
T 2oaj_A          503 LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAIN  582 (902)
T ss_dssp             EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEE
T ss_pred             EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEE
Confidence            8899999999999987652                                             355666665 999999


Q ss_pred             EcCCCcEe
Q 033738          104 RGKKGFAV  111 (112)
Q Consensus       104 ~~~~~~~~  111 (112)
                      |+|+| +|
T Consensus       583 fSpdG-~l  589 (902)
T 2oaj_A          583 NSNIG-FV  589 (902)
T ss_dssp             ECBTS-EE
T ss_pred             ecCCc-EE
Confidence            99999 65

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.77  E-value=1.3e-17  Score=103.18  Aligned_cols=102  Identities=21%  Similarity=0.268  Sum_probs=87.8

Q ss_pred             ccCCCCCcCCCeEEcCC---CCEEEEEc-CCeEEEEeCCCCceeee-ccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738            2 IRGGRSYVSSPPAFSND---VKRLLVCT-SNTVSIFSTSTGLQISS-LEGHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~---~~~l~~~~-~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      +.+|...|.+ ++|+|+   +++|++++ |+.|++||+.+++.+.. +.+|...|.+++|+ ++.       ++++++.|
T Consensus       191 ~~~h~~~v~~-~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~-------~l~s~~~d  261 (450)
T 2vdu_B          191 ILGHVSMLTD-VHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY-------LLLSAGGD  261 (450)
T ss_dssp             SEECSSCEEE-EEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT-------EEEEEESS
T ss_pred             eecccCceEE-EEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC-------EEEEEeCC
Confidence            4678889998 999999   88999998 99999999998877766 56899999999999 885       77799999


Q ss_pred             CcEEEEeCCCCceEEEEecC--------------------------CCEEEEEEcCCCcEeC
Q 033738           77 ETIKYWDFSTPELLKTIDVK--------------------------FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~~~~~--------------------------~~v~~~~~~~~~~~~~  112 (112)
                      +.|++||+.+++++..+..+                          ..+..+.|+|++++++
T Consensus       262 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  323 (450)
T 2vdu_B          262 DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA  323 (450)
T ss_dssp             SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEE
T ss_pred             CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEE
Confidence            99999999999988777521                          2688999999998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.77  E-value=6.2e-18  Score=110.30  Aligned_cols=102  Identities=19%  Similarity=0.311  Sum_probs=90.0

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|.+.|.+ ++|+|+++.|++++ |+.|++||+.+++.+..+..|...+.+++|+|++.       ++++++.|+.++
T Consensus        51 ~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~  122 (814)
T 3mkq_A           51 IQVTETPVRA-GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-------YVLSGSDDLTVK  122 (814)
T ss_dssp             EECCSSCEEE-EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-------EEEEEETTSEEE
T ss_pred             EecCCCcEEE-EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC-------EEEEEcCCCEEE
Confidence            4578899998 99999999999998 89999999999988888999999999999999995       677999999999


Q ss_pred             EEeCCCC-ceEEEEecCC-CEEEEEEcC-CCcEe
Q 033738           81 YWDFSTP-ELLKTIDVKF-PIFSMVRGK-KGFAV  111 (112)
Q Consensus        81 ~~~~~~~-~~~~~~~~~~-~v~~~~~~~-~~~~~  111 (112)
                      +||+.++ .....+..+. .+.+++|+| +++.+
T Consensus       123 vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  156 (814)
T 3mkq_A          123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (814)
T ss_dssp             EEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             EEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence            9999887 5666666665 899999999 66654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=6.4e-18  Score=101.40  Aligned_cols=99  Identities=13%  Similarity=0.092  Sum_probs=78.8

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCcee-eeccc-cCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI-SSLEG-HTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      |...+.+ ++|+|+|+++++|+ |+.|++||+++++.. ..+.. |.++|.+++|+|++.       ++++++ ++.+++
T Consensus       169 ~~~~i~~-~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-------~l~s~~-~~~v~i  239 (343)
T 3lrv_A          169 SDVEYSS-GVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-------WMVVEC-DQTVVC  239 (343)
T ss_dssp             SSCCCCE-EEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSS-------EEEEEE-SSBEEE
T ss_pred             CCCceEE-EEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCC-------EEEEEe-CCeEEE
Confidence            4456777 99999999999998 999999999998766 67777 899999999999995       677888 459999


Q ss_pred             EeCCCCceEEEEec---CC-CE--EEEEEcCCCcEeC
Q 033738           82 WDFSTPELLKTIDV---KF-PI--FSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~~~~~~~---~~-~v--~~~~~~~~~~~~~  112 (112)
                      ||+++++.+..+..   +. .+  .+++|+|+|++++
T Consensus       240 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  276 (343)
T 3lrv_A          240 FDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI  276 (343)
T ss_dssp             EETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred             EEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence            99998876544332   22 33  4699999998763

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.77  E-value=1.8e-17  Score=100.37  Aligned_cols=101  Identities=10%  Similarity=0.098  Sum_probs=83.8

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeecc--ccCCceEEEEEec-CCCCccceeEEEEeeecC
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVP-ASTPATKILSYCWTASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~d   76 (112)
                      +.+|.+.|.+ ++|+|++ +.|++++ |+.|++||+.+++....+.  +|...|.+++|+| ++       .++++++.|
T Consensus        69 ~~~h~~~v~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~~l~s~~~d  140 (383)
T 3ei3_B           69 ASPFDRRVTS-LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT-------NQLFVSSIR  140 (383)
T ss_dssp             ECCCSSCEEE-EEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE-------EEEEEEETT
T ss_pred             ccCCCCCEEE-EEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC-------CEEEEEeCC
Confidence            4679999998 9999999 8999998 9999999999876665554  5889999999999 45       377799999


Q ss_pred             CcEEEEeCCCCceEEEEecC----CCEEEEEEcCCCcEe
Q 033738           77 ETIKYWDFSTPELLKTIDVK----FPIFSMVRGKKGFAV  111 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~  111 (112)
                      +.+++||+.. ..+..+..+    ..+.+++|+|+++++
T Consensus       141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l  178 (383)
T 3ei3_B          141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQML  178 (383)
T ss_dssp             TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEE
T ss_pred             CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEE
Confidence            9999999985 444555432    369999999999876

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.76  E-value=3.8e-17  Score=97.88  Aligned_cols=96  Identities=20%  Similarity=0.218  Sum_probs=87.0

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC-CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTST-GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      .+.+ ++|+|+++.+++++ |+.|++||+.+ .+....+..|...+.+++|+|++.       ++++++.|+.+++||++
T Consensus       177 ~~~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          177 AATV-AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-------YFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             CEEE-EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-------EEEEEETTSEEEEEETT
T ss_pred             ceeE-EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-------EEEEecCCceEEEEECC
Confidence            7776 99999999999998 89999999998 677788888999999999999985       77799999999999999


Q ss_pred             CCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           86 TPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +++.+..+.....+..++|+|+++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~l  274 (369)
T 3zwl_B          249 TLQVLKKYETDCPLNTAVITPLKEFI  274 (369)
T ss_dssp             TCCEEEEEECSSCEEEEEECSSSSEE
T ss_pred             CCceeeeecCCCCceeEEecCCCceE
Confidence            99999988877799999999999876

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.76  E-value=3.1e-17  Score=99.36  Aligned_cols=99  Identities=17%  Similarity=0.187  Sum_probs=84.9

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      |...+.+ ++|+|+++.+++++ |+.|++||++ ++.+..+..|...|.+++|+|++.      .++++++.|+.+++||
T Consensus       162 ~~~~v~~-~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~------~~l~s~~~d~~i~iwd  233 (383)
T 3ei3_B          162 WDYWYCC-VDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD------WLMATSSVDATVKLWD  233 (383)
T ss_dssp             SSCCEEE-EEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT------TEEEEEETTSEEEEEE
T ss_pred             CCCCeEE-EEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC------CEEEEEeCCCEEEEEe
Confidence            4567887 99999999999998 8999999994 667888888999999999999984      2567999999999999


Q ss_pred             CCC----CceEEEEecCCCEEEEEEcC-CCcEe
Q 033738           84 FST----PELLKTIDVKFPIFSMVRGK-KGFAV  111 (112)
Q Consensus        84 ~~~----~~~~~~~~~~~~v~~~~~~~-~~~~~  111 (112)
                      +++    +.++..+.....+.+++|+| +++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l  266 (383)
T 3ei3_B          234 LRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKL  266 (383)
T ss_dssp             GGGCCSTTCEEEEEECSSCEEEEEECTTTSCEE
T ss_pred             CCCCCcccceEEEecCCCceEEEEEcCCCCCEE
Confidence            987    66777775555999999999 98876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.76  E-value=1.2e-17  Score=99.43  Aligned_cols=106  Identities=14%  Similarity=0.127  Sum_probs=81.2

Q ss_pred             ccCCCCCcCCCeEEcCC-----------------CCEEEEEc-CCeEEEEeCCCC---ceeeeccccCCceEEEEEecCC
Q 033738            2 IRGGRSYVSSPPAFSND-----------------VKRLLVCT-SNTVSIFSTSTG---LQISSLEGHTAPVTTVIVVPAS   60 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~-----------------~~~l~~~~-~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~   60 (112)
                      +.+|...+.+ ++|+|+                 ++.|++++ |+.|++||++..   +....+.+|...|.+++|+|++
T Consensus       146 ~~~h~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~  224 (316)
T 3bg1_A          146 NNAHTIGCNA-VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI  224 (316)
T ss_dssp             TTSSSSCBCC-CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCS
T ss_pred             eccccCCcce-EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCC
Confidence            3578888887 999997                 46888888 999999999754   3556788899999999999985


Q ss_pred             CCccceeEEEEeeecCCcEEEEeCCCC---c-eEEEEecC-CCEEEEEEcCCCcEe
Q 033738           61 TPATKILSYCWTASLDETIKYWDFSTP---E-LLKTIDVK-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        61 ~~~~~~~~~~~~~~~d~~i~~~~~~~~---~-~~~~~~~~-~~v~~~~~~~~~~~~  111 (112)
                      ....   .++++++.|+.+++|++.+.   . ....+..+ ..+.+++|+|+|++|
T Consensus       225 ~~~~---~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l  277 (316)
T 3bg1_A          225 GLPT---STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANIL  277 (316)
T ss_dssp             SCSC---CEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCE
T ss_pred             CCCC---ceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEE
Confidence            1000   16779999999999998762   1 12233333 489999999999865

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.76  E-value=1.3e-16  Score=94.95  Aligned_cols=102  Identities=21%  Similarity=0.298  Sum_probs=89.7

Q ss_pred             ccCCCCCcCCCeEEcCCC--CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            2 IRGGRSYVSSPPAFSNDV--KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~--~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +.+|...+.. +++++++  ..+++++ |+.|++||+++++....+.+|.+.|.+++|+|++.       ++++++.|+.
T Consensus       167 ~~~~~~~v~~-~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~-------~l~s~s~Dg~  238 (340)
T 4aow_A          167 DESHSEWVSC-VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-------LCASGGKDGQ  238 (340)
T ss_dssp             SSSCSSCEEE-EEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-------EEEEEETTCE
T ss_pred             eccccCcccc-eEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC-------EEEEEeCCCe
Confidence            3567888887 8998875  4667777 89999999999988888999999999999999995       7789999999


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +++||+++++.+..+..+..+.++.|+|++..+
T Consensus       239 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  271 (340)
T 4aow_A          239 AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL  271 (340)
T ss_dssp             EEEEETTTTEEEEEEECSSCEEEEEECSSSSEE
T ss_pred             EEEEEeccCceeeeecCCceEEeeecCCCCcee
Confidence            999999999999999888899999999988654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.76  E-value=4.2e-17  Score=99.26  Aligned_cols=99  Identities=18%  Similarity=0.223  Sum_probs=79.7

Q ss_pred             CCCCcCCCeEEcCCCC-EEEEEc-CCeEEEEeC----CCCc------eeeeccc----------cCCceEEEEEecCCCC
Q 033738            5 GRSYVSSPPAFSNDVK-RLLVCT-SNTVSIFST----STGL------QISSLEG----------HTAPVTTVIVVPASTP   62 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~-~l~~~~-~~~v~~~~~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~~   62 (112)
                      |.+.|.+ ++|+|+++ +|++++ |+.|++|++    .+++      ....+..          |.+.|.+++|+|++. 
T Consensus        44 ~~~~v~~-~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  121 (425)
T 1r5m_A           44 KLDNIVS-STWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN-  121 (425)
T ss_dssp             ECSCCSE-EEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS-
T ss_pred             ccCceEE-EEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC-
Confidence            5588998 99999999 999998 899999999    7776      3333333          567899999999985 


Q ss_pred             ccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           63 ATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        63 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                            ++++++.|+.+++|| .++..+..+..+. .+.+++|+|++++++
T Consensus       122 ------~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (425)
T 1r5m_A          122 ------SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHII  165 (425)
T ss_dssp             ------EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEE
T ss_pred             ------EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEE
Confidence                  778999999999999 5677888887766 999999999998763

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.76  E-value=4.9e-18  Score=105.13  Aligned_cols=99  Identities=15%  Similarity=0.055  Sum_probs=79.5

Q ss_pred             CCCcCCCeEEcCCCCEEE----EEc-CCeEEEEeCCCC--------c---eeeeccccCCceEEEEEecCCCCccceeEE
Q 033738            6 RSYVSSPPAFSNDVKRLL----VCT-SNTVSIFSTSTG--------L---QISSLEGHTAPVTTVIVVPASTPATKILSY   69 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~----~~~-~~~v~~~~~~~~--------~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   69 (112)
                      ...|.+ ++|+|+|++|+    +++ |+.|++||+.++        +   ....+.+|...|.+++|+|+..      .+
T Consensus        92 ~~~v~~-l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~------~~  164 (434)
T 2oit_A           92 KFPIHH-LALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP------SM  164 (434)
T ss_dssp             SSCEEE-EEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT------TE
T ss_pred             CCcccE-EEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC------CE
Confidence            345777 99999999999    666 899999998654        1   1345566889999999999832      26


Q ss_pred             EEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           70 CWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        70 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +++++.|+.+++||++++..+.....+. .+.+++|+|+|+++
T Consensus       165 las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~l  207 (434)
T 2oit_A          165 VAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQL  207 (434)
T ss_dssp             EEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCE
T ss_pred             EEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEE
Confidence            7799999999999999887665555544 89999999999876

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.76  E-value=2.9e-17  Score=101.20  Aligned_cols=102  Identities=20%  Similarity=0.243  Sum_probs=85.5

Q ss_pred             ccCCCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCC---ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738            2 IRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTG---LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      +.+|...|.+ ++|+| ++..+++++ |+.|++||++++   +....+..|...+.+++|+|++.      .++++++.|
T Consensus       227 ~~~h~~~v~~-v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~------~~l~tg~~d  299 (430)
T 2xyi_A          227 FTGHTAVVED-VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE------FILATGSAD  299 (430)
T ss_dssp             ECCCSSCEEE-EEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCT------TEEEEEETT
T ss_pred             ecCCCCCEee-eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCC------CEEEEEeCC
Confidence            3578888998 99999 668888887 899999999876   45566778899999999999885      256799999


Q ss_pred             CcEEEEeCCC-CceEEEEecCC-CEEEEEEcCCCcE
Q 033738           77 ETIKYWDFST-PELLKTIDVKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        77 ~~i~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~  110 (112)
                      +.|++||+++ +.++..+..+. .+.+++|+|+++.
T Consensus       300 g~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~  335 (430)
T 2xyi_A          300 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET  335 (430)
T ss_dssp             SEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTT
T ss_pred             CeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCC
Confidence            9999999997 56677777666 9999999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.75  E-value=5.7e-17  Score=100.31  Aligned_cols=100  Identities=12%  Similarity=0.164  Sum_probs=85.6

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|.+.+..  ++.++++.+++++ |+.|++||+.+++.+..+.+|.+.|.+++|+|++        ++++++.|+.++
T Consensus       117 l~~h~~~v~~--~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--------~l~s~s~dg~i~  186 (464)
T 3v7d_B          117 LRGHMTSVIT--CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--------ILVSGSTDRTVR  186 (464)
T ss_dssp             EECCSSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--------EEEEEETTSCEE
T ss_pred             EcCCCCCcEE--EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--------EEEEEeCCCCEE
Confidence            5678887653  4555778999998 9999999999999889999999999999999887        677999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcC--CCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGK--KGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~~  111 (112)
                      +||+++++++..+..+. .+.+++|++  +++++
T Consensus       187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l  220 (464)
T 3v7d_B          187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI  220 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEE
T ss_pred             EEECCCCcEEEEECCCCCccEEEEEecCCCCCEE
Confidence            99999999999988776 999999984  55544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.75  E-value=3.9e-17  Score=101.12  Aligned_cols=101  Identities=11%  Similarity=0.117  Sum_probs=82.4

Q ss_pred             ccCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            2 IRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.+|...|.+ ++|+|+ ++.|++++ |+.|++||++++........|...+.+++|+|++.       ++++++.|+.+
T Consensus       145 ~~~h~~~V~~-v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~-------~lasgs~dg~v  216 (434)
T 2oit_A          145 LKDAGGMVID-MKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGK-------QLAVGKQNGTV  216 (434)
T ss_dssp             CCSGGGSEEE-EEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSS-------CEEEEETTSCE
T ss_pred             cCCCCCceEE-EEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCC-------EEEEEcCCCcE
Confidence            4568889998 999998 78899888 99999999998866555566788999999999995       77799999999


Q ss_pred             EEEeCCCCceEEEEecC-------C-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVK-------F-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-------~-~v~~~~~~~~~~~~  111 (112)
                      ++||.+ +.....+..+       . .+.++.|++++.++
T Consensus       217 ~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          217 VQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA  255 (434)
T ss_dssp             EEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred             EEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEE
Confidence            999998 5555554322       1 68899999887654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.74  E-value=3e-17  Score=101.25  Aligned_cols=100  Identities=7%  Similarity=-0.027  Sum_probs=79.7

Q ss_pred             ccCCCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            2 IRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      +.+|.+.|.+ ++|+| +++.|++++ |++|++||++++.......  .+...+.+++|+|++.       ++++++.|+
T Consensus       160 ~~gH~~~V~~-l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~g~~dg  231 (435)
T 4e54_B          160 GIGAGGSITG-LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR-------MVVTGDNVG  231 (435)
T ss_dssp             CCSSSCCCCE-EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT-------EEEEECSSS
T ss_pred             ccCCCCCEEE-EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCC-------EEEEEeCCC
Confidence            4579999998 99998 689999999 9999999998654322222  2334567899999995       778999999


Q ss_pred             cEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcE
Q 033738           78 TIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        78 ~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~  110 (112)
                      .|++||++ ++.+..+..|. .|.+++|+|+++.
T Consensus       232 ~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~  264 (435)
T 4e54_B          232 NVILLNMD-GKELWNLRMHKKKVTHVALNPCCDW  264 (435)
T ss_dssp             BEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSS
T ss_pred             cEeeeccC-cceeEEEecccceEEeeeecCCCce
Confidence            99999987 45556666666 9999999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.74  E-value=1.1e-16  Score=98.62  Aligned_cols=102  Identities=17%  Similarity=0.205  Sum_probs=83.5

Q ss_pred             ccCCCCCcCCCeEEcCCCC-EEEEEc-CCeEEEEeCCCCce-------eeeccccCCceEEEEEecCCCCccceeEEEEe
Q 033738            2 IRGGRSYVSSPPAFSNDVK-RLLVCT-SNTVSIFSTSTGLQ-------ISSLEGHTAPVTTVIVVPASTPATKILSYCWT   72 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~-~l~~~~-~~~v~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   72 (112)
                      +.+|...+.+ ++|+|++. .|++++ |+.|++|++..+..       ...+..|...|.+++|+|++.      .++++
T Consensus       177 ~~~h~~~v~~-l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~------~~l~s  249 (430)
T 2xyi_A          177 LRGHQKEGYG-LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE------SLFGS  249 (430)
T ss_dssp             EECCSSCCCC-EEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT------TEEEE
T ss_pred             ecCCCCCeEE-EEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC------CEEEE
Confidence            4578889998 99999998 899998 89999999987321       345567889999999999543      26779


Q ss_pred             eecCCcEEEEeCCCC---ceEEEEecCC-CEEEEEEcCCCcE
Q 033738           73 ASLDETIKYWDFSTP---ELLKTIDVKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        73 ~~~d~~i~~~~~~~~---~~~~~~~~~~-~v~~~~~~~~~~~  110 (112)
                      ++.|+.|++||++++   ..+..+..+. .+.+++|+|+++.
T Consensus       250 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  291 (430)
T 2xyi_A          250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF  291 (430)
T ss_dssp             EETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTT
T ss_pred             EeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCC
Confidence            999999999999976   4666666665 9999999999874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.74  E-value=3.1e-17  Score=99.94  Aligned_cols=100  Identities=15%  Similarity=0.208  Sum_probs=85.5

Q ss_pred             CCCCCcCCCeEEcCCC-CEEEEEc-CC---eEEEEeCCCC-ceeeecc-ccCCceEEEEEec-CCCCccceeEEEEeeec
Q 033738            4 GGRSYVSSPPAFSNDV-KRLLVCT-SN---TVSIFSTSTG-LQISSLE-GHTAPVTTVIVVP-ASTPATKILSYCWTASL   75 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~-~~l~~~~-~~---~v~~~~~~~~-~~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~   75 (112)
                      +|...+.+ ++|+|++ ..+++++ ++   .|++||++++ .....+. .|...+.+++|+| ++.       ++++++.
T Consensus       212 ~~~~~v~~-~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-------~l~s~~~  283 (416)
T 2pm9_A          212 GIKQQLSV-VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-------LLLSSGR  283 (416)
T ss_dssp             CCCCCEEE-EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-------CEEEEES
T ss_pred             ccCCceEE-EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-------eEEEEeC
Confidence            34778887 9999997 6788887 77   9999999886 5566777 7999999999999 664       6779999


Q ss_pred             CCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCC-cEe
Q 033738           76 DETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKG-FAV  111 (112)
Q Consensus        76 d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~~~  111 (112)
                      |+.+++||+++++.+..+..+. .+.+++|+|++ .++
T Consensus       284 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l  321 (416)
T 2pm9_A          284 DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLF  321 (416)
T ss_dssp             SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEE
T ss_pred             CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEE
Confidence            9999999999999999988776 89999999998 554

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.74  E-value=4.5e-17  Score=97.04  Aligned_cols=100  Identities=9%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc---eeeeccccCCceEEEEEecCCCCccceeE-EEEeeecC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL---QISSLEGHTAPVTTVIVVPASTPATKILS-YCWTASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~d   76 (112)
                      ..+|.+.|.+ ++|+|+++.|++++ |+.|++|++.++.   ....+..|...+.+++|+|++       . ++++++.|
T Consensus         7 ~~~h~~~v~~-~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~l~~~~~d   78 (342)
T 1yfq_A            7 EQAPKDYISD-IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-------DLQIYVGTVQ   78 (342)
T ss_dssp             SSCCSSCEEE-EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-------SEEEEEEETT
T ss_pred             ccCCCCcEEE-EEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-------CcEEEEEcCC
Confidence            4679999998 99999999999998 9999999998765   244555788999999999997       4 56699999


Q ss_pred             CcEEEEeC-CCCceEEEEec--CC-CEEEEEEcCCCcEe
Q 033738           77 ETIKYWDF-STPELLKTIDV--KF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        77 ~~i~~~~~-~~~~~~~~~~~--~~-~v~~~~~~~~~~~~  111 (112)
                      +.+++||+ .+++. ..+..  +. .+.+++|+| ++.+
T Consensus        79 g~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l  115 (342)
T 1yfq_A           79 GEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKL  115 (342)
T ss_dssp             SCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEE
T ss_pred             CeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEE
Confidence            99999999 87755 55555  55 999999999 7655

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.74  E-value=1e-16  Score=97.15  Aligned_cols=101  Identities=17%  Similarity=0.189  Sum_probs=84.7

Q ss_pred             ccCCCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCCceeeecc-------------ccCCceEEEEEecCCCCccce
Q 033738            2 IRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQISSLE-------------GHTAPVTTVIVVPASTPATKI   66 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~   66 (112)
                      +.+|.+.|.+ ++|+| +++.|++++ |+.|++||+.++.....+.             .|...|.+++|+|++.     
T Consensus        39 ~~~h~~~v~~-~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----  112 (408)
T 4a11_B           39 ERIHGGGINT-LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT-----  112 (408)
T ss_dssp             CCCCSSCEEE-EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT-----
T ss_pred             eeccCCcEEE-EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC-----
Confidence            5679999998 99999 999999998 9999999998765443332             4888999999999442     


Q ss_pred             eEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCc
Q 033738           67 LSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGF  109 (112)
Q Consensus        67 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  109 (112)
                       .++++++.|+.+++||+.+++....+.....+.++.++|.+.
T Consensus       113 -~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (408)
T 4a11_B          113 -GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVST  154 (408)
T ss_dssp             -TCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCS
T ss_pred             -cEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCC
Confidence             266799999999999999999988888777899999988543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.74  E-value=7e-18  Score=106.55  Aligned_cols=101  Identities=13%  Similarity=0.070  Sum_probs=81.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc-eeeeccccCCceEEE--EEecCC-CCccceeEEEEeeecC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-QISSLEGHTAPVTTV--IVVPAS-TPATKILSYCWTASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~~~~~~~~~~~~~~d   76 (112)
                      +.+|...|.+ ++|++++ .|++|+ |++|++||++++. ....+..|...|.++  .++|++ .       ++++++.|
T Consensus       262 l~~h~~~v~s-v~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~-------~laS~S~D  332 (524)
T 2j04_B          262 LSLADSLITT-FDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT-------VVSTVAVD  332 (524)
T ss_dssp             ECCTTTCEEE-EEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC-------EEEEEETT
T ss_pred             EEcCCCCEEE-EEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe-------EEEEeccC
Confidence            3578888987 9999865 788888 9999999998764 345578899999999  567776 4       77899999


Q ss_pred             CcEEEEeCCCCceEEEEecCC---CEEEEEEcCCCcEe
Q 033738           77 ETIKYWDFSTPELLKTIDVKF---PIFSMVRGKKGFAV  111 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~  111 (112)
                      +++++||+++++++..+..+.   .+.+++|+|+++.+
T Consensus       333 ~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l  370 (524)
T 2j04_B          333 GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY  370 (524)
T ss_dssp             SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred             CeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence            999999999887766665443   47889999988754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.2e-16  Score=96.16  Aligned_cols=97  Identities=22%  Similarity=0.229  Sum_probs=81.9

Q ss_pred             ccCCCCCcCCCeEEcCC--CCEEEEEc-CCeEEEEeCCCCc--eeeeccccCCceEEEEEecC--CCCccceeEEEEeee
Q 033738            2 IRGGRSYVSSPPAFSND--VKRLLVCT-SNTVSIFSTSTGL--QISSLEGHTAPVTTVIVVPA--STPATKILSYCWTAS   74 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~--~~~l~~~~-~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~   74 (112)
                      +.+|...|.+ ++|+++  ++.|++++ |+.|++||+.+++  ....+..|...+.+++|+|+  +.       ++++++
T Consensus        51 ~~~h~~~v~~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~l~~~~  122 (379)
T 3jrp_A           51 LTGHEGPVWR-VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-------LLLVAS  122 (379)
T ss_dssp             ECCCSSCEEE-EEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-------EEEEEE
T ss_pred             ecCCCCcEEE-EEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-------EEEEec
Confidence            4679999998 999987  89999998 9999999998876  56677788999999999998  74       777999


Q ss_pred             cCCcEEEEeCCCCce--EEEEecCC-CEEEEEEcC
Q 033738           75 LDETIKYWDFSTPEL--LKTIDVKF-PIFSMVRGK  106 (112)
Q Consensus        75 ~d~~i~~~~~~~~~~--~~~~~~~~-~v~~~~~~~  106 (112)
                      .|+.+++||+.++..  ...+..+. .+.+++|+|
T Consensus       123 ~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~  157 (379)
T 3jrp_A          123 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  157 (379)
T ss_dssp             TTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred             CCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence            999999999987733  33444454 999999999

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.73  E-value=3.2e-16  Score=92.49  Aligned_cols=87  Identities=17%  Similarity=0.265  Sum_probs=72.9

Q ss_pred             cCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738            9 VSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      ... ++||+++ .|++|.|++|++||+.+++.+..+.  .|...|.+++|+|++.       ++++++.|+.+++||+++
T Consensus        28 ~~~-l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-------~l~sgs~Dg~v~iw~~~~   98 (318)
T 4ggc_A           28 LNL-VDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-------YLAVGTSSAEVQLWDVQQ   98 (318)
T ss_dssp             CBC-EEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-------EEEEEETTSEEEEEETTT
T ss_pred             ceE-EEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-------EEEEEECCCcEEEeecCC
Confidence            455 8999876 7777779999999999998776554  5677899999999995       788999999999999999


Q ss_pred             CceEEEEecCC-CEEEEEE
Q 033738           87 PELLKTIDVKF-PIFSMVR  104 (112)
Q Consensus        87 ~~~~~~~~~~~-~v~~~~~  104 (112)
                      ++++..+..|. .+.++.+
T Consensus        99 ~~~~~~~~~h~~~~~~~~~  117 (318)
T 4ggc_A           99 QKRLRNMTSHSARVGSLSW  117 (318)
T ss_dssp             TEEEEEEECCSSCEEEEEE
T ss_pred             ceeEEEecCccceEEEeec
Confidence            99999888776 5655544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.73  E-value=5.6e-17  Score=98.80  Aligned_cols=101  Identities=10%  Similarity=0.040  Sum_probs=84.9

Q ss_pred             ccCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCc------eee---eccccCCceEEEEEecCCCCccceeEEE
Q 033738            2 IRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGL------QIS---SLEGHTAPVTTVIVVPASTPATKILSYC   70 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~------~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~   70 (112)
                      +.+|...|.+ ++|+|+ ++.|++++ |+.|++||+.+++      ...   ....|...+.+++|+|++.      .++
T Consensus       109 ~~~h~~~v~~-~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l  181 (416)
T 2pm9_A          109 FSNHSSSVKT-VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLA------HVF  181 (416)
T ss_dssp             CCCSSSCCCE-EEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCT------TEE
T ss_pred             ccCCccceEE-EEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCC------cEE
Confidence            4678999998 999998 89999998 8999999998765      222   3356888999999999942      267


Q ss_pred             EeeecCCcEEEEeCCCCceEEEEecC-------CCEEEEEEcCCCc
Q 033738           71 WTASLDETIKYWDFSTPELLKTIDVK-------FPIFSMVRGKKGF  109 (112)
Q Consensus        71 ~~~~~d~~i~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~  109 (112)
                      ++++.|+.+++||+++++.+..+..+       ..+.+++|+|++.
T Consensus       182 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (416)
T 2pm9_A          182 ASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS  227 (416)
T ss_dssp             EEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT
T ss_pred             EEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC
Confidence            79999999999999999988888764       3899999999974

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.73  E-value=1.9e-17  Score=101.76  Aligned_cols=101  Identities=13%  Similarity=0.205  Sum_probs=82.9

Q ss_pred             ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCce----eeeccccCC------------ceEEEEEecCCCCc
Q 033738            2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQ----ISSLEGHTA------------PVTTVIVVPASTPA   63 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~----~~~~~~~~~------------~v~~~~~~~~~~~~   63 (112)
                      +.+|...|.+ ++|+|++ +.|++++ |+.|++||+++++.    ...+..+..            .+.+++|+|++.  
T Consensus       222 ~~~~~~~v~~-~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--  298 (447)
T 3dw8_B          222 MEELTEVITA-AEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR--  298 (447)
T ss_dssp             GGGCCCCEEE-EEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS--
T ss_pred             ccccCcceEE-EEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC--
Confidence            4578889998 9999998 8999998 99999999988765    566666665            899999999995  


Q ss_pred             cceeEEEEeeecCCcEEEEeCCC-CceEEEEecCCC----------------EEEEEEcCCCcEe
Q 033738           64 TKILSYCWTASLDETIKYWDFST-PELLKTIDVKFP----------------IFSMVRGKKGFAV  111 (112)
Q Consensus        64 ~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~----------------v~~~~~~~~~~~~  111 (112)
                           ++++++. +.+++||++. ++++..+..+..                +..++|+|+++++
T Consensus       299 -----~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l  357 (447)
T 3dw8_B          299 -----YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV  357 (447)
T ss_dssp             -----EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE
T ss_pred             -----EEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEE
Confidence                 6778888 9999999997 888877776653                2348999999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.73  E-value=2.8e-16  Score=96.00  Aligned_cols=98  Identities=18%  Similarity=0.226  Sum_probs=85.3

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      |...|.+ ++|+|+++.|++++ |+.|++||+.+++.+..+..|...+.+++|++  .       ++++++.|+.+++||
T Consensus       133 ~~~~v~~-v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~-------~l~~~~~dg~i~i~d  202 (401)
T 4aez_A          133 ESTYVAS-VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR--H-------VLSSGSRSGAIHHHD  202 (401)
T ss_dssp             TTCCEEE-EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET--T-------EEEEEETTSEEEEEE
T ss_pred             CCCCEEE-EEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC--C-------EEEEEcCCCCEEEEe
Confidence            6788887 99999999999998 99999999999988888989999999999943  2       677999999999999


Q ss_pred             CC-CCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           84 FS-TPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        84 ~~-~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      ++ .+..+..+..+. .+.+++|+|++++++
T Consensus       203 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  233 (401)
T 4aez_A          203 VRIANHQIGTLQGHSSEVCGLAWRSDGLQLA  233 (401)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             cccCcceeeEEcCCCCCeeEEEEcCCCCEEE
Confidence            98 456667777666 999999999998763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.73  E-value=5.8e-17  Score=96.15  Aligned_cols=98  Identities=13%  Similarity=0.168  Sum_probs=80.6

Q ss_pred             ccCCCCCcCCCeEEcC--CCCEEEEEc-CCeEEEEeCCCC---------ceeeeccccCCceEEEEEecC--CCCcccee
Q 033738            2 IRGGRSYVSSPPAFSN--DVKRLLVCT-SNTVSIFSTSTG---------LQISSLEGHTAPVTTVIVVPA--STPATKIL   67 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~--~~~~l~~~~-~~~v~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~   67 (112)
                      +.+|...|.+ ++|+|  +++.|++++ |+.|++||++++         +....+..|...+.+++|+|+  +.      
T Consensus        53 ~~~~~~~v~~-~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------  125 (351)
T 3f3f_A           53 WRAHDSSIVA-IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL------  125 (351)
T ss_dssp             EECCSSCEEE-EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS------
T ss_pred             eccCCCcEEE-EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc------
Confidence            4578999998 99999  699999998 999999999876         446677789999999999998  74      


Q ss_pred             EEEEeeecCCcEEEEeCCCCceEEEEe-------------cC-CCEEEEEEcCC
Q 033738           68 SYCWTASLDETIKYWDFSTPELLKTID-------------VK-FPIFSMVRGKK  107 (112)
Q Consensus        68 ~~~~~~~~d~~i~~~~~~~~~~~~~~~-------------~~-~~v~~~~~~~~  107 (112)
                       ++++++.|+.+++||+++++.+..+.             .+ ..+.++.|+|+
T Consensus       126 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  178 (351)
T 3f3f_A          126 -KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS  178 (351)
T ss_dssp             -EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCC
T ss_pred             -EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccC
Confidence             77799999999999998876543322             12 27889999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.73  E-value=1.8e-16  Score=94.99  Aligned_cols=106  Identities=12%  Similarity=-0.012  Sum_probs=83.1

Q ss_pred             ccCCCCCcCCCeEEcCC---C-CEEEEE-cCCeEEEEeCCCCceeeeccc-----cCCceEEEEEecCCCCccceeEEEE
Q 033738            2 IRGGRSYVSSPPAFSND---V-KRLLVC-TSNTVSIFSTSTGLQISSLEG-----HTAPVTTVIVVPASTPATKILSYCW   71 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~---~-~~l~~~-~~~~v~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~   71 (112)
                      ..+|.+.|.+ ++|+|+   + ..++++ +++.|++||+.+++.+..+..     +...+.+++|+|+.....   .+++
T Consensus        14 ~~~h~~~v~~-i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~l~   89 (366)
T 3k26_A           14 KEDHNQPLFG-VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH---PLLA   89 (366)
T ss_dssp             ECTTCSCEEE-EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC---EEEE
T ss_pred             ecCCCCceEE-EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC---CEEE
Confidence            3579999998 999984   3 444444 488999999998766655543     557799999999931000   2677


Q ss_pred             eeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcC-CCcEe
Q 033738           72 TASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGK-KGFAV  111 (112)
Q Consensus        72 ~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~~~  111 (112)
                      +++.|+.|++||+.+++.+..+..+. .+.+++|+| +++++
T Consensus        90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  131 (366)
T 3k26_A           90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLL  131 (366)
T ss_dssp             EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEE
T ss_pred             EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEE
Confidence            99999999999999999999888766 999999999 77765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.72  E-value=5e-17  Score=97.15  Aligned_cols=102  Identities=19%  Similarity=0.310  Sum_probs=83.3

Q ss_pred             cCCCCCcCCCeEEcC---CCCEEEEEc-CCeEEEEeCCCCceeeecc-----ccCCceEEEEEecCCCCccceeEEEEee
Q 033738            3 RGGRSYVSSPPAFSN---DVKRLLVCT-SNTVSIFSTSTGLQISSLE-----GHTAPVTTVIVVPASTPATKILSYCWTA   73 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~---~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~   73 (112)
                      ..|...+.+ ++|+|   +++.+++++ |+.|++||+++++....+.     .|...+.+++|+|++.      .+++++
T Consensus       206 ~~~~~~v~~-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~  278 (357)
T 3i2n_A          206 TNIKNGVCS-LEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR------ELFLTA  278 (357)
T ss_dssp             EECSSCEEE-EEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE------EEEEEE
T ss_pred             cCCCCceEE-EEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC------cEEEEE
Confidence            346778887 99999   899999998 8999999998765544443     7899999999999983      267799


Q ss_pred             ecCCcEEEEeCCCC-------------------ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           74 SLDETIKYWDFSTP-------------------ELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        74 ~~d~~i~~~~~~~~-------------------~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +.|+.+++||++.+                   +.+..+..+. .+.+++|+|+++++
T Consensus       279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  336 (357)
T 3i2n_A          279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGL  336 (357)
T ss_dssp             ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTE
T ss_pred             eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeE
Confidence            99999999998754                   3455666666 89999999999865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.72  E-value=4.9e-17  Score=97.20  Aligned_cols=102  Identities=11%  Similarity=0.161  Sum_probs=81.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEE-EEc----CCeEEEEeCCCCceeeec-cccCCceEEEEEecC---CCCccceeEEEEe
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLL-VCT----SNTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPA---STPATKILSYCWT   72 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~-~~~----~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~~~~~~~~~~~   72 (112)
                      +++|.+.|.+ ++|+|++..++ +++    |+.|++||+.+++..... ..|...|.+++|+|+   +.       ++++
T Consensus        14 ~~~h~~~v~~-~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~l~~   85 (357)
T 3i2n_A           14 QKGFNYTVFD-CKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQR-------YLAT   85 (357)
T ss_dssp             EEECSSCEEE-EEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTC-------CEEE
T ss_pred             ccCCCCceEE-EEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCc-------eEEE
Confidence            4679999998 99999996655 553    689999999987654332 368889999999998   43       6779


Q ss_pred             eecCCcEEEEeCCCCc-eEEEEecCC-CEEEEEE------cCCCcEe
Q 033738           73 ASLDETIKYWDFSTPE-LLKTIDVKF-PIFSMVR------GKKGFAV  111 (112)
Q Consensus        73 ~~~d~~i~~~~~~~~~-~~~~~~~~~-~v~~~~~------~~~~~~~  111 (112)
                      ++.|+.+++||+.+++ .+..+..+. .+.++.|      +|+++.+
T Consensus        86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l  132 (357)
T 3i2n_A           86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEI  132 (357)
T ss_dssp             EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEE
T ss_pred             ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEE
Confidence            9999999999999887 777887776 8999954      6777665

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.8e-16  Score=92.48  Aligned_cols=95  Identities=13%  Similarity=0.040  Sum_probs=81.6

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|.+.|.+ ++| |+++.|++++ |+.|++||+.+++....+..|...+.+++|+|++.       ++++++.|+.++
T Consensus        14 l~~h~~~v~~-~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~   84 (313)
T 3odt_A           14 LKGHDQDVRD-VVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKE-------LLLFGGKDTMIN   84 (313)
T ss_dssp             ECCCSSCEEE-EEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTT-------EEEEEETTSCEE
T ss_pred             hhCCCCCcEE-EEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCC-------EEEEecCCCeEE
Confidence            6789999998 999 9999999998 99999999998887888888999999999999995       778999999999


Q ss_pred             EEeCCCC---ceEEEEecCC-CEEEEEEc
Q 033738           81 YWDFSTP---ELLKTIDVKF-PIFSMVRG  105 (112)
Q Consensus        81 ~~~~~~~---~~~~~~~~~~-~v~~~~~~  105 (112)
                      +|++...   +.+..+..+. .+.++.|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSFQ  113 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEEE
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEec
Confidence            9998654   4556666665 88888883

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.71  E-value=3.2e-16  Score=96.96  Aligned_cols=100  Identities=18%  Similarity=0.211  Sum_probs=87.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|...+.+ ++|+|+++.+++++ |+.|++||+++++.+..+..|...+.++++++  .       ++++++.|+.++
T Consensus       306 ~~~~~~~v~~-~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~-------~l~s~s~dg~v~  375 (464)
T 3v7d_B          306 LSGHTDRIYS-TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--K-------FLVSAAADGSIR  375 (464)
T ss_dssp             ECCCSSCEEE-EEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS--S-------EEEEEETTSEEE
T ss_pred             ecCCCCCEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC--C-------EEEEEeCCCcEE
Confidence            4578889998 99999999999998 89999999999998999999999999999973  2       677999999999


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +||+.++...........+..++|+|+++++
T Consensus       376 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l  406 (464)
T 3v7d_B          376 GWDANDYSRKFSYHHTNLSAITTFYVSDNIL  406 (464)
T ss_dssp             EEETTTCCEEEEEECTTCCCEEEEEECSSEE
T ss_pred             EEECCCCceeeeecCCCCccEEEEEeCCCEE
Confidence            9999998877777665677778889988765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=2e-16  Score=97.91  Aligned_cols=100  Identities=14%  Similarity=0.137  Sum_probs=84.5

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee----eccccCCceEEEEEecC---CCCccceeEEEEeeec
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS----SLEGHTAPVTTVIVVPA---STPATKILSYCWTASL   75 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~   75 (112)
                      +|...+.+ ++|+|+++.|++++ ++.+++|++.++....    .+..|...|.+++|+|+   +.       ++++++.
T Consensus       147 ~~~~~v~~-~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-------~l~s~~~  218 (450)
T 2vdu_B          147 CFSKRPNA-ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-------FIITSDR  218 (450)
T ss_dssp             ECSSCEEE-EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-------EEEEEET
T ss_pred             cCCCCceE-EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-------EEEEEcC
Confidence            45677887 99999999999998 8999999998765443    67788999999999999   73       7789999


Q ss_pred             CCcEEEEeCCCCceEEEEe-cCC-CEEEEEEcCCCcEeC
Q 033738           76 DETIKYWDFSTPELLKTID-VKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        76 d~~i~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~~~~~  112 (112)
                      |+.|++||+.++..+..+. .+. .+.+++|+ ++++++
T Consensus       219 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~  256 (450)
T 2vdu_B          219 DEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL  256 (450)
T ss_dssp             TSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred             CCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence            9999999999998887743 454 89999999 888763

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.71  E-value=6.2e-16  Score=93.37  Aligned_cols=85  Identities=18%  Similarity=0.150  Sum_probs=71.5

Q ss_pred             CEEEE--Ec-CCeEEEEeCCCCc----------------eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc-E
Q 033738           20 KRLLV--CT-SNTVSIFSTSTGL----------------QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET-I   79 (112)
Q Consensus        20 ~~l~~--~~-~~~v~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~-i   79 (112)
                      ..++.  ++ ++.|++||+.+++                ....+.+|.+.|.+++|+|++.       ++++++.|++ +
T Consensus       148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-------~l~s~s~d~~~v  220 (355)
T 3vu4_A          148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-------MVATCSQDGTII  220 (355)
T ss_dssp             TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-------EEEEEETTCSEE
T ss_pred             cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-------EEEEEeCCCCEE
Confidence            45555  34 7999999998754                1567788999999999999995       7889999998 9


Q ss_pred             EEEeCCCCceEEEEe-c-CC-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTID-V-KF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~-~-~~-~v~~~~~~~~~~~~  111 (112)
                      ++||+++++++..+. . +. .|.+++|+|+|+++
T Consensus       221 ~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l  255 (355)
T 3vu4_A          221 RVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKL  255 (355)
T ss_dssp             EEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEE
T ss_pred             EEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEE
Confidence            999999999999998 3 44 99999999999876

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.71  E-value=4.6e-17  Score=99.43  Aligned_cols=90  Identities=16%  Similarity=0.054  Sum_probs=71.6

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCce-----eeeccccCCceEEEEEec--------CCCCccceeEEEEeeecCCc
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQ-----ISSLEGHTAPVTTVIVVP--------ASTPATKILSYCWTASLDET   78 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~d~~   78 (112)
                      ..+.+++..+++++ |++|++||.+.+..     +..+.+|.+.|.+++|+|        ++.       ++++++.|++
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-------~las~s~D~t  167 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-------VIASVGDDCT  167 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-------EEEEEETTSE
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-------EEEEEECCCe
Confidence            34455667888998 99999999987643     234678999999999998        553       7789999999


Q ss_pred             EEEEeCCCCceEEEEecC-CCEEEEEEcCCCc
Q 033738           79 IKYWDFSTPELLKTIDVK-FPIFSMVRGKKGF  109 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~  109 (112)
                      +++||+.++.++..+..+ .++.+++|+|++.
T Consensus       168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~  199 (393)
T 4gq1_A          168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNP  199 (393)
T ss_dssp             EEEEEEETTEEEEEEEECSSCEEEEEEETTEE
T ss_pred             EEEEECCCCceeeeecCCCCCcEEEEECCCCC
Confidence            999999887766665554 4999999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.70  E-value=9.9e-16  Score=92.87  Aligned_cols=103  Identities=14%  Similarity=0.236  Sum_probs=80.9

Q ss_pred             ccCCCCCcCCCeEEcCCCC-EEEEEc-CCeEEEEeCCCCc-eeeec---------------cccCCceEEEEEecCCCCc
Q 033738            2 IRGGRSYVSSPPAFSNDVK-RLLVCT-SNTVSIFSTSTGL-QISSL---------------EGHTAPVTTVIVVPASTPA   63 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~-~l~~~~-~~~v~~~~~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~~   63 (112)
                      +.+|...|.+ ++|+|+++ .+++++ |+.|++||++++. ....+               ..|...+.+++|+|++.  
T Consensus       182 ~~~~~~~v~~-~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--  258 (408)
T 4a11_B          182 LQGHRQEILA-VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL--  258 (408)
T ss_dssp             ECCCCSCEEE-EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS--
T ss_pred             ecCCCCcEEE-EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC--
Confidence            4578889998 99999998 577887 8999999997654 22222               46788899999999985  


Q ss_pred             cceeEEEEeeecCCcEEEEeCCCC-----------------------------------------------ceEEEEecC
Q 033738           64 TKILSYCWTASLDETIKYWDFSTP-----------------------------------------------ELLKTIDVK   96 (112)
Q Consensus        64 ~~~~~~~~~~~~d~~i~~~~~~~~-----------------------------------------------~~~~~~~~~   96 (112)
                           ++++++.|+.+++||+.++                                               +.+..+..+
T Consensus       259 -----~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  333 (408)
T 4a11_B          259 -----HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH  333 (408)
T ss_dssp             -----EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred             -----EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence                 7779999999999997654                                               334445555


Q ss_pred             C-CEEEEEEcCCCcEeC
Q 033738           97 F-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        97 ~-~v~~~~~~~~~~~~~  112 (112)
                      . .|.+++|+|++++++
T Consensus       334 ~~~v~~~~~s~~~~~l~  350 (408)
T 4a11_B          334 YKTVDCCVFQSNFQELY  350 (408)
T ss_dssp             SSCEEEEEEETTTTEEE
T ss_pred             CCeEEEEEEcCCCCEEE
Confidence            5 899999999998763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.70  E-value=4.1e-16  Score=92.87  Aligned_cols=98  Identities=14%  Similarity=0.212  Sum_probs=83.5

Q ss_pred             CCCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCC------ceeeeccccCC---------ceEEEEEecCCCCccce
Q 033738            4 GGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTG------LQISSLEGHTA---------PVTTVIVVPASTPATKI   66 (112)
Q Consensus         4 ~h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~------~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~   66 (112)
                      .|...+.+ ++|+| +++.+++++ |+.+++|+++..      +....+..|..         .+.+++|+|++.     
T Consensus       191 ~~~~~i~~-i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-----  264 (342)
T 1yfq_A          191 GLKYQIRD-VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-----  264 (342)
T ss_dssp             SCSSCEEE-EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-----
T ss_pred             CCCCceeE-EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-----
Confidence            45667887 99999 999999998 899999999776      55566666644         899999999985     


Q ss_pred             eEEEEeeecCCcEEEEeCCCCceEEEEecC-C-CEEEEEEcCCCcEe
Q 033738           67 LSYCWTASLDETIKYWDFSTPELLKTIDVK-F-PIFSMVRGKKGFAV  111 (112)
Q Consensus        67 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~~~  111 (112)
                        ++++++.|+.+++||+.+++.+..+..+ . ++.+++  |+++++
T Consensus       265 --~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l  307 (342)
T 1yfq_A          265 --FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNIL  307 (342)
T ss_dssp             --CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEE
T ss_pred             --EEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeE
Confidence              6779999999999999999999988876 5 899988  888776

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.70  E-value=1.5e-15  Score=93.30  Aligned_cols=90  Identities=18%  Similarity=0.298  Sum_probs=75.5

Q ss_pred             CcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            8 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      +... ++||++ +.|++|.|++|++||..+++....+.  .|...|++++|+|++.       ++++++.|+.|++||+.
T Consensus       107 y~~~-l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-------~lasgs~Dg~v~iWd~~  177 (420)
T 4gga_A          107 YLNL-VDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-------YLAVGTSSAEVQLWDVQ  177 (420)
T ss_dssp             TCBC-EEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-------EEEEEETTSCEEEEETT
T ss_pred             ccee-EEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC-------EEEEEECCCeEEEEEcC
Confidence            4555 899975 57777779999999999998766554  5677899999999995       78899999999999999


Q ss_pred             CCceEEEEecCC-CEEEEEEcC
Q 033738           86 TPELLKTIDVKF-PIFSMVRGK  106 (112)
Q Consensus        86 ~~~~~~~~~~~~-~v~~~~~~~  106 (112)
                      +++++..+..|. .+.++.+++
T Consensus       178 ~~~~~~~~~~h~~~v~~~s~~~  199 (420)
T 4gga_A          178 QQKRLRNMTSHSARVGSLSWNS  199 (420)
T ss_dssp             TTEEEEEECCCSSCEEEEEEET
T ss_pred             CCcEEEEEeCCCCceEEEeeCC
Confidence            999999988877 788777653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.69  E-value=1.9e-15  Score=92.83  Aligned_cols=99  Identities=18%  Similarity=0.188  Sum_probs=84.6

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+|...|.+ ++|+|+|++|++|+ |+.|++||+++++.+..+.+|...+.+++++  +.       ++++++.|+.+++
T Consensus       144 ~~~~~~V~s-v~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~-------~l~sgs~d~~i~~  213 (420)
T 4gga_A          144 EQPGEYISS-VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SY-------ILSSGSRSGHIHH  213 (420)
T ss_dssp             CSTTCCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT-------EEEEEETTSEEEE
T ss_pred             cCCCCcEEE-EEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CC-------EEEEEeCCCceeE
Confidence            467788998 99999999999998 9999999999999999999999999888775  32       6779999999999


Q ss_pred             EeCCCC-ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           82 WDFSTP-ELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ||.... ..+..+..+. .+..+.++|+++++
T Consensus       214 ~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l  245 (420)
T 4gga_A          214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL  245 (420)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eeecccceeeEEecccccceeeeeecCCCCee
Confidence            998764 4456666666 89999999998865

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.69  E-value=5.3e-16  Score=95.13  Aligned_cols=103  Identities=13%  Similarity=0.085  Sum_probs=88.3

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+|.+.+.+ ++|+|+++.+++++ |+.|++||+++++....+..+...+.+++|+|++.      .+++++..++.+++
T Consensus       166 ~~~~~~v~~-~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~i~~  238 (433)
T 3bws_A          166 KKKLGFVET-ISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD------LVYCSNWISEDISV  238 (433)
T ss_dssp             HTTCCEEEE-EEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT------EEEEEETTTTEEEE
T ss_pred             cccCCceeE-EEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC------EEEEEecCCCcEEE
Confidence            367778887 99999999999998 89999999998888888888888999999999985      23346668999999


Q ss_pred             EeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      ||+++++.+..+..+..+.+++|+|+|+.++
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          239 IDRKTKLEIRKTDKIGLPRGLLLSKDGKELY  269 (433)
T ss_dssp             EETTTTEEEEECCCCSEEEEEEECTTSSEEE
T ss_pred             EECCCCcEEEEecCCCCceEEEEcCCCCEEE
Confidence            9999998888887777899999999998763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.69  E-value=6.9e-16  Score=92.38  Aligned_cols=96  Identities=20%  Similarity=0.307  Sum_probs=81.6

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEE--ecCCCCccceeEEEEeeecCCc
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIV--VPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +.+|.+.|.+ ++|+|+++.|++++ |+.|++||+.+++... +..|...+.+++|  +|++.       ++++++.|+.
T Consensus        82 ~~~h~~~v~~-~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-------~l~~~~~dg~  152 (368)
T 3mmy_A           82 QQMHTGPVLD-VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS-------CVMTGSWDKT  152 (368)
T ss_dssp             EEECSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE-------EEEEEETTSE
T ss_pred             eccccCCEEE-EEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC-------EEEEccCCCc
Confidence            4578899998 99999999999998 9999999999887544 5668999999999  77773       6789999999


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcC
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGK  106 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~  106 (112)
                      +++||+++++.+..+..+..+.++.+.+
T Consensus       153 i~vwd~~~~~~~~~~~~~~~~~~~~~~~  180 (368)
T 3mmy_A          153 LKFWDTRSSNPMMVLQLPERCYCADVIY  180 (368)
T ss_dssp             EEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred             EEEEECCCCcEEEEEecCCCceEEEecC
Confidence            9999999999888888777666665554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.69  E-value=5.7e-16  Score=95.22  Aligned_cols=94  Identities=16%  Similarity=0.216  Sum_probs=78.7

Q ss_pred             CCCCcCCCeE--EcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc--cCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            5 GRSYVSSPPA--FSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG--HTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         5 h~~~v~~~~~--~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +...+.+ +.  ++++++.+++++ |+.|++||+++++.+..+..  |.+.|.+++|+|++.       ++++++.|+.+
T Consensus       167 ~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-------~l~s~~~dg~i  238 (437)
T 3gre_A          167 KNEYAVR-MRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC-------VLILGTTRGII  238 (437)
T ss_dssp             SCCCEEE-EEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC-------EEEEEETTSCE
T ss_pred             cccCceE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC-------EEEEEcCCCeE
Confidence            3444554 55  568899999998 89999999999988888877  788999999999985       77899999999


Q ss_pred             EEEeCCCCceEEEEe-cCC-CEEEEEEcC
Q 033738           80 KYWDFSTPELLKTID-VKF-PIFSMVRGK  106 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~-~~~-~v~~~~~~~  106 (112)
                      ++||+++++++..+. .+. ++.+++|+|
T Consensus       239 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  267 (437)
T 3gre_A          239 DIWDIRFNVLIRSWSFGDHAPITHVEVCQ  267 (437)
T ss_dssp             EEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred             EEEEcCCccEEEEEecCCCCceEEEEecc
Confidence            999999999988875 344 899996665

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.68  E-value=8.9e-16  Score=100.34  Aligned_cols=98  Identities=21%  Similarity=0.223  Sum_probs=82.5

Q ss_pred             ccCCCCCcCCCeEEcCC--CCEEEEEc-CCeEEEEeCCCCc--eeeeccccCCceEEEEEecC--CCCccceeEEEEeee
Q 033738            2 IRGGRSYVSSPPAFSND--VKRLLVCT-SNTVSIFSTSTGL--QISSLEGHTAPVTTVIVVPA--STPATKILSYCWTAS   74 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~--~~~l~~~~-~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~   74 (112)
                      +.+|.+.|.+ ++|+|+  ++.+++++ |+.|++||+.+++  ....+..|...|.+++|+|+  +.       ++++++
T Consensus        49 l~~h~~~V~~-l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-------~l~sgs  120 (753)
T 3jro_A           49 LTGHEGPVWR-VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-------LLLVAS  120 (753)
T ss_dssp             ECCCSSCEEE-EEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-------EEEEEE
T ss_pred             ccCCcCceEE-EEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCC-------EEEEEe
Confidence            4689999998 999988  89999998 9999999998875  56677789999999999998  74       778999


Q ss_pred             cCCcEEEEeCCCCc--eEEEEecCC-CEEEEEEcCC
Q 033738           75 LDETIKYWDFSTPE--LLKTIDVKF-PIFSMVRGKK  107 (112)
Q Consensus        75 ~d~~i~~~~~~~~~--~~~~~~~~~-~v~~~~~~~~  107 (112)
                      .|+.+++||++++.  ....+..+. .+.++.|+|.
T Consensus       121 ~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A          121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred             CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence            99999999998763  233444444 9999999993

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.67  E-value=4.7e-17  Score=100.03  Aligned_cols=88  Identities=19%  Similarity=0.214  Sum_probs=72.8

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      |.+.|.+ ++|+|+++.|++++ |+.|++||+++++.+..+. .+...|.+++|+|.-.++.   .++++++.|+.|++|
T Consensus       213 h~~~v~~-~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~---~~l~s~~~dg~i~iw  288 (437)
T 3gre_A          213 RHGAVSS-ICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNS---VIVVGGSSKTFLTIW  288 (437)
T ss_dssp             GGCCEEE-EEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTE---EEEEEESTTEEEEEE
T ss_pred             CCCceEE-EEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCc---cEEEEEcCCCcEEEE
Confidence            7888998 99999999999998 9999999999988777765 6777899998876521111   266799999999999


Q ss_pred             eCCCCceEEEEecC
Q 033738           83 DFSTPELLKTIDVK   96 (112)
Q Consensus        83 ~~~~~~~~~~~~~~   96 (112)
                      |+++++++..+..+
T Consensus       289 d~~~~~~~~~~~~~  302 (437)
T 3gre_A          289 NFVKGHCQYAFINS  302 (437)
T ss_dssp             ETTTTEEEEEEESS
T ss_pred             EcCCCcEEEEEEcC
Confidence            99999988887744

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.66  E-value=3.1e-15  Score=92.10  Aligned_cols=100  Identities=12%  Similarity=0.067  Sum_probs=77.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-C---CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEE-eeecC
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW-TASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~d   76 (112)
                      +.+|...+.+ ++|+|||+.|++++ +   ..|++||+.+++. ..+..+...+.+++|+|++.       .++ +++.+
T Consensus       174 l~~~~~~v~~-~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~spdg~-------~la~~~~~~  244 (415)
T 2hqs_A          174 VHRSPQPLMS-PAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGS-------KLAFALSKT  244 (415)
T ss_dssp             EEEESSCEEE-EEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSS-------EEEEEECTT
T ss_pred             EeCCCCccee-eEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-EEeecCCCcccCEEEcCCCC-------EEEEEEecC
Confidence            3467778887 99999999999887 5   4999999998865 45666777899999999995       333 55554


Q ss_pred             C--cEEEEeCCCCceEEEEecC-CCEEEEEEcCCCcEe
Q 033738           77 E--TIKYWDFSTPELLKTIDVK-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        77 ~--~i~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~  111 (112)
                      +  .|++||+.+++.. .+..+ ..+.+++|+|+|+.|
T Consensus       245 g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~l  281 (415)
T 2hqs_A          245 GSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNL  281 (415)
T ss_dssp             SSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEE
T ss_pred             CCceEEEEECCCCCEE-eCcCCCCcccceEECCCCCEE
Confidence            4  5999999988764 44444 389999999999865

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.65  E-value=1.2e-14  Score=88.09  Aligned_cols=97  Identities=20%  Similarity=0.193  Sum_probs=80.1

Q ss_pred             CCcCCCeEEcCCCCEE-EEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            7 SYVSSPPAFSNDVKRL-LVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l-~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      ..+.+ ++|+|+++.+ ++++ ++.|++||+.+++....+..+. .+.+++|+|++.      .+++++..++.+++||+
T Consensus        32 ~~~~~-~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~------~l~~~~~~~~~v~v~d~  103 (391)
T 1l0q_A           32 SNPMG-AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGK------QVYVTNMASSTLSVIDT  103 (391)
T ss_dssp             SSEEE-EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSS------EEEEEETTTTEEEEEET
T ss_pred             CCcce-EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCC------EEEEEECCCCEEEEEEC
Confidence            34666 9999999977 5665 8999999999888777776544 889999999985      23345667799999999


Q ss_pred             CCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           85 STPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      .+++.+..+..+..+.+++|+|+|+.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~s~dg~~l  130 (391)
T 1l0q_A          104 TSNTVAGTVKTGKSPLGLALSPDGKKL  130 (391)
T ss_dssp             TTTEEEEEEECSSSEEEEEECTTSSEE
T ss_pred             CCCeEEEEEeCCCCcceEEECCCCCEE
Confidence            999998888887789999999999866

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.64  E-value=9.6e-15  Score=90.15  Aligned_cols=94  Identities=23%  Similarity=0.302  Sum_probs=81.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|.+.+..  +++++|+.+++++ |+.|++||+.+++....+.+|.+.|.+++++  +.       ++++++.|+.++
T Consensus       114 l~~h~~~v~~--~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~-------~l~s~~~dg~i~  182 (445)
T 2ovr_B          114 LKGHDDHVIT--CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DN-------IIISGSTDRTLK  182 (445)
T ss_dssp             EECSTTSCEE--EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TT-------EEEEEETTSCEE
T ss_pred             ecccCCCcEE--EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CC-------EEEEEeCCCeEE
Confidence            5688887754  5777899999998 9999999999999889999999999999997  32       677999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcC
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGK  106 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~  106 (112)
                      +||+.+++.+..+..+. .+.++.|++
T Consensus       183 vwd~~~~~~~~~~~~h~~~v~~~~~~~  209 (445)
T 2ovr_B          183 VWNAETGECIHTLYGHTSTVRCMHLHE  209 (445)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred             EEECCcCcEEEEECCCCCcEEEEEecC
Confidence            99999999988888776 898888864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.63  E-value=9e-15  Score=92.80  Aligned_cols=88  Identities=14%  Similarity=0.072  Sum_probs=71.2

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCce-------eeec----cccCCceEEEEEecCCCCccceeEEEEeeec
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQ-------ISSL----EGHTAPVTTVIVVPASTPATKILSYCWTASL   75 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   75 (112)
                      .+.+ ++|||||+.|++++ ||+|++||+.++..       +..+    .+|...|.+++|+|++         +++++.
T Consensus       131 sv~s-vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---------Laass~  200 (588)
T 2j04_A          131 TYHC-FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---------LVAALS  200 (588)
T ss_dssp             CEEE-EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---------EEEEET
T ss_pred             cEEE-EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---------EEEEeC
Confidence            3776 99999999999999 99999999987742       3554    5677899999999974         348888


Q ss_pred             CCcEEEEeCCCCce---EEEEe-cCC-CEEEEEEc
Q 033738           76 DETIKYWDFSTPEL---LKTID-VKF-PIFSMVRG  105 (112)
Q Consensus        76 d~~i~~~~~~~~~~---~~~~~-~~~-~v~~~~~~  105 (112)
                      |+.+++||+..+..   ..++. .+. .|.+++|+
T Consensus       201 D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs  235 (588)
T 2j04_A          201 NNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV  235 (588)
T ss_dssp             TCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred             CCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence            99999999987763   34553 454 89999998

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.61  E-value=2e-14  Score=88.16  Aligned_cols=97  Identities=10%  Similarity=0.102  Sum_probs=80.6

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee-----eccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS-----SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+.+ ++|+|++..+++++ ++.|++||+.+++...     .+..|.+.+.+++|++++.       ++++++.|+.+++
T Consensus       124 ~~~~-~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~s~~~d~~v~~  195 (433)
T 3bws_A          124 QPKS-VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE-------LWVSQMQANAVHV  195 (433)
T ss_dssp             CBCC-CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE-------EEEEEGGGTEEEE
T ss_pred             CceE-EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE-------EEEEECCCCEEEE
Confidence            4556 99999667777776 7899999999887665     3456788899999999884       7779999999999


Q ss_pred             EeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           82 WDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      ||+++++.+..+..+. .+.+++|+|+++.+|
T Consensus       196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  227 (433)
T 3bws_A          196 FDLKTLAYKATVDLTGKWSKILLYDPIRDLVY  227 (433)
T ss_dssp             EETTTCCEEEEEECSSSSEEEEEEETTTTEEE
T ss_pred             EECCCceEEEEEcCCCCCeeEEEEcCCCCEEE
Confidence            9999999888887665 899999999998763

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.60  E-value=4e-14  Score=87.28  Aligned_cols=96  Identities=21%  Similarity=0.321  Sum_probs=81.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|...|.+ +++  +++.+++++ |+.|++||+++++.+..+..|...+.+++++  +.       ++++++.|+.++
T Consensus       252 ~~~~~~~v~~-~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~-------~l~~g~~dg~i~  319 (435)
T 1p22_A          252 LVGHRAAVNV-VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DR-------LVVSGSSDNTIR  319 (435)
T ss_dssp             ECCCSSCEEE-EEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TT-------EEEEEETTSCEE
T ss_pred             ecCCCCcEEE-EEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CC-------EEEEEeCCCeEE
Confidence            3568888876 777  788999998 9999999999998888999999999999884  32       677999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||+++++++..+..+. .+.+++|  +++.+
T Consensus       320 iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l  349 (435)
T 1p22_A          320 LWDIECGACLRVLEGHEELVRCIRF--DNKRI  349 (435)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEC--CSSEE
T ss_pred             EEECCCCCEEEEEeCCcCcEEEEEe--cCCEE
Confidence            99999999999998776 8999988  44443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.59  E-value=4.7e-14  Score=86.98  Aligned_cols=84  Identities=24%  Similarity=0.327  Sum_probs=74.2

Q ss_pred             EEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEE
Q 033738           14 AFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKT   92 (112)
Q Consensus        14 ~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~   92 (112)
                      +++++++.+++++ |+.|++||+.+++....+.+|.+.|.++++  ++.       ++++++.|+.|++||+.+++.+..
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~-------~l~sg~~dg~i~vwd~~~~~~~~~  208 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DER-------VIITGSSDSTVRVWDVNTGEMLNT  208 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSS-------EEEEEETTSCEEEEESSSCCEEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCC-------EEEEEcCCCeEEEEECCCCcEEEE
Confidence            4556899999998 999999999999888899999999999988  553       777999999999999999999988


Q ss_pred             EecCC-CEEEEEEcC
Q 033738           93 IDVKF-PIFSMVRGK  106 (112)
Q Consensus        93 ~~~~~-~v~~~~~~~  106 (112)
                      +..+. .+.++.|++
T Consensus       209 ~~~h~~~v~~l~~~~  223 (435)
T 1p22_A          209 LIHHCEAVLHLRFNN  223 (435)
T ss_dssp             ECCCCSCEEEEECCT
T ss_pred             EcCCCCcEEEEEEcC
Confidence            88776 899999874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.59  E-value=8.5e-14  Score=85.95  Aligned_cols=91  Identities=21%  Similarity=0.287  Sum_probs=78.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +.+|.+.|.+ +.++  ++.+++++ |+.|++||+.+++.+..+..|...|.+++++++         .+++++.|+.++
T Consensus       155 ~~~h~~~v~~-~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---------~l~s~s~dg~i~  222 (445)
T 2ovr_B          155 LVGHTGGVWS-SQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK---------RVVSGSRDATLR  222 (445)
T ss_dssp             CCCCSSCEEE-EEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT---------EEEEEETTSEEE
T ss_pred             EcCCCCCEEE-EEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC---------EEEEEeCCCEEE
Confidence            5678888887 8886  66888888 999999999999888888899999999998532         567999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEE
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVR  104 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~  104 (112)
                      +||+.+++.+..+..+. .+.++.+
T Consensus       223 ~wd~~~~~~~~~~~~~~~~v~~~~~  247 (445)
T 2ovr_B          223 VWDIETGQCLHVLMGHVAAVRCVQY  247 (445)
T ss_dssp             EEESSSCCEEEEEECCSSCEEEEEE
T ss_pred             EEECCCCcEEEEEcCCcccEEEEEE
Confidence            99999999988888776 8888888

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.59  E-value=1.9e-13  Score=80.59  Aligned_cols=99  Identities=18%  Similarity=0.194  Sum_probs=82.0

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+|...|.+ ++|+|+++.+++|+ |+.|++||+++++.+..+.+|...+.++.+  ++.       ++++++.++.+++
T Consensus        64 ~~~~~~V~~-v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~-------~l~s~~~~~~~~~  133 (318)
T 4ggc_A           64 EQPGEYISS-VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSY-------ILSSGSRSGHIHH  133 (318)
T ss_dssp             CSTTCCEEE-EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETT-------EEEEEETTSEEEE
T ss_pred             cCCCCeEEE-EEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCC-------EEEEEecCCceEe
Confidence            467788998 99999999999998 999999999999988999889888776654  443       6779999999999


Q ss_pred             EeCCCC-ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           82 WDFSTP-ELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      |+...+ ..+..+..+. .+..+.+.++++++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  165 (318)
T 4ggc_A          134 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL  165 (318)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eecCCCceeEEEEcCccCceEEEEEcCCCCEE
Confidence            998765 4445556655 88999999988765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.58  E-value=1.3e-13  Score=83.59  Aligned_cols=98  Identities=20%  Similarity=0.188  Sum_probs=80.3

Q ss_pred             CCcCCCeEEcCCCCEE-EEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            7 SYVSSPPAFSNDVKRL-LVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l-~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      ..+.. ++|+|+++.+ ++++ ++.|++||+.+++....+..+ ..+..++|+|++.      .++++++.++.+++||+
T Consensus       116 ~~~~~-~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~------~l~~~~~~~~~v~~~d~  187 (391)
T 1l0q_A          116 KSPLG-LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGT------KVYVANFDSMSISVIDT  187 (391)
T ss_dssp             SSEEE-EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSS------EEEEEETTTTEEEEEET
T ss_pred             CCcce-EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCC------EEEEEeCCCCEEEEEEC
Confidence            35566 9999999977 5666 899999999988877776654 4568999999985      23357788999999999


Q ss_pred             CCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           85 STPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      ++++....+..+..+.+++|+|+|+.++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~  215 (391)
T 1l0q_A          188 VTNSVIDTVKVEAAPSGIAVNPEGTKAY  215 (391)
T ss_dssp             TTTEEEEEEECSSEEEEEEECTTSSEEE
T ss_pred             CCCeEEEEEecCCCccceEECCCCCEEE
Confidence            9998888887777899999999998764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.56  E-value=4.2e-14  Score=85.10  Aligned_cols=78  Identities=13%  Similarity=0.173  Sum_probs=59.7

Q ss_pred             CCeEEEEeCC-CCceeeeccccCCceEEEEEec---CCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC----C
Q 033738           27 SNTVSIFSTS-TGLQISSLEGHTAPVTTVIVVP---ASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF----P   98 (112)
Q Consensus        27 ~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~----~   98 (112)
                      |+.|++|++. .++.+..+..|...+..++|++   ++.       ++++++.|++|++||+++|+++.++..+.    .
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~-------~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~  228 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE-------ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQAS  228 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT-------EEEEEETTSEEEEEETTTCCEEEEEECCC---CC
T ss_pred             CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc-------eEEEecCCCcEEEEECCCCcEEEEEcCCCcceee
Confidence            5777777773 3665666666777777777777   443       67799999999999999999999997543    5


Q ss_pred             EEEEEEcCCCcEe
Q 033738           99 IFSMVRGKKGFAV  111 (112)
Q Consensus        99 v~~~~~~~~~~~~  111 (112)
                      +.+++|+|+|..+
T Consensus       229 v~~vafSpdG~~l  241 (356)
T 2w18_A          229 VCHKAYSEMGLLF  241 (356)
T ss_dssp             CEEEEEEETTEEE
T ss_pred             eEEEEECCCCCEE
Confidence            6777899999865

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.55  E-value=9e-14  Score=93.54  Aligned_cols=100  Identities=10%  Similarity=0.039  Sum_probs=79.6

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC------
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD------   76 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d------   76 (112)
                      +|...+.. ++|+|||+.|++++ ++.+++||+.+++.......+.+.+..++|+|++.       ++++++.+      
T Consensus       376 ~~~~~~~~-~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~-------~la~~~~~~~~~~~  447 (1045)
T 1k32_A          376 ENLGNVFA-MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR-------FIAYGFPLKHGETD  447 (1045)
T ss_dssp             CCCCSEEE-EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC-------EEEEEEEECSSTTC
T ss_pred             CCccceee-eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCC-------eEEEEecCcccccc
Confidence            56667776 99999999999888 79999999998876666667888889999999995       44455443      


Q ss_pred             ----CcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           77 ----ETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        77 ----~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                          +.+++||+.+++ ...+..+. .+..++|+|+|+.++
T Consensus       448 ~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~  487 (1045)
T 1k32_A          448 GYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLY  487 (1045)
T ss_dssp             SCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEE
T ss_pred             CCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEE
Confidence                489999999887 44554444 788899999998764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.55  E-value=2e-13  Score=84.06  Aligned_cols=101  Identities=13%  Similarity=0.009  Sum_probs=74.5

Q ss_pred             cCCCCCcCCCeEEcCCCCEEE-EEc-C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec-CC
Q 033738            3 RGGRSYVSSPPAFSNDVKRLL-VCT-S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL-DE   77 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~-~~~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-d~   77 (112)
                      .+|.+.+.+ ++|+|||+.|+ +++ +  ..|++||+.+++ ...+..+...+..++|+|++.       +++.++. ++
T Consensus       219 ~~~~~~~~~-~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~spdg~-------~l~~~s~~~g  289 (415)
T 2hqs_A          219 ASFPRHNGA-PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQ-------NLAFTSDQAG  289 (415)
T ss_dssp             ECCSSCEEE-EEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSS-------EEEEEECTTS
T ss_pred             ecCCCcccC-EEEcCCCCEEEEEEecCCCceEEEEECCCCC-EEeCcCCCCcccceEECCCCC-------EEEEEECCCC
Confidence            456667777 99999999887 555 4  469999998876 466777778899999999995       4445544 44


Q ss_pred             --cEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           78 --TIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        78 --~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                        .+++||..+++..........+.+++|+|+|++|+
T Consensus       290 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~  326 (415)
T 2hqs_A          290 RPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV  326 (415)
T ss_dssp             SCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEE
T ss_pred             CcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEE
Confidence              68888988776533222334788999999998763

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.48  E-value=1.5e-12  Score=77.33  Aligned_cols=94  Identities=13%  Similarity=0.275  Sum_probs=73.9

Q ss_pred             CCeEEcCCCCEEEEEc--CCeEEEEeCCCCce-eeeccccCCceEEEEEecCCCCccceeEEEEeeecC-C--cEEEEeC
Q 033738           11 SPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQ-ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD-E--TIKYWDF   84 (112)
Q Consensus        11 ~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d-~--~i~~~~~   84 (112)
                      . ++|+|+|+.+++++  ++.|.+||..+++. ...+..+..+..+++|+|++.       ++++...+ +  .+++||.
T Consensus        44 ~-~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~-------~l~~~~~~~~~~~i~v~d~  115 (331)
T 3u4y_A           44 D-TAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQ-------FAVTVTGLNHPFNMQSYSF  115 (331)
T ss_dssp             E-EEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSS-------EEEECCCSSSSCEEEEEET
T ss_pred             e-EEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCC-------EEEEecCCCCcccEEEEEC
Confidence            5 89999999776654  68999999998876 556665555555599999995       44444444 3  8999999


Q ss_pred             CCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           85 STPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      .+++.+..+..+.....++|+|+|+++|
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~spdg~~l~  143 (331)
T 3u4y_A          116 LKNKFISTIPIPYDAVGIAISPNGNGLI  143 (331)
T ss_dssp             TTTEEEEEEECCTTEEEEEECTTSSCEE
T ss_pred             CCCCeEEEEECCCCccceEECCCCCEEE
Confidence            9999888888777789999999998654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.46  E-value=1e-12  Score=76.39  Aligned_cols=100  Identities=13%  Similarity=0.039  Sum_probs=73.0

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCC-Cceeeecccc-CCceEEEEEecCCCCccceeEEEEeee--cCCc
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTST-GLQISSLEGH-TAPVTTVIVVPASTPATKILSYCWTAS--LDET   78 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~--~d~~   78 (112)
                      ..|...+.+ ++|+|+|+.+++++++.|++||+.+ ++.......+ ...+.+++|+|++.       ++++++  .++.
T Consensus        38 ~~~~~~v~~-~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-------~l~~~~~~~~~~  109 (297)
T 2ojh_A           38 WQTPELFEA-PNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA-------LYAISDKVEFGK  109 (297)
T ss_dssp             EEESSCCEE-EEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS-------EEEEEECTTTSS
T ss_pred             ccCCcceEe-eEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCC-------EEEEEEeCCCCc
Confidence            346677887 9999999999998899999999998 7655554444 35678899999995       555666  3344


Q ss_pred             --EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           79 --IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 --i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                        +..++..++. ...+..+..+..++|+|+|+.+
T Consensus       110 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l  143 (297)
T 2ojh_A          110 SAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSF  143 (297)
T ss_dssp             CEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEE
T ss_pred             ceEEEEECCCCc-eEEeecCCCccceEECCCCCEE
Confidence              4445555554 3445445578889999999865

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.46  E-value=1.6e-12  Score=82.64  Aligned_cols=92  Identities=11%  Similarity=0.106  Sum_probs=78.4

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC--CCCce
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF--STPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~--~~~~~   89 (112)
                      ..++|++..+++++ ++.|.+||..+++.+..+..... +..++++|+++       ++++++.|+.|++||+  .++++
T Consensus       143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~-------~l~v~~~d~~V~v~D~~~~t~~~  214 (543)
T 1nir_A          143 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGR-------YLLVIGRDARIDMIDLWAKEPTK  214 (543)
T ss_dssp             SCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSC-------EEEEEETTSEEEEEETTSSSCEE
T ss_pred             cccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCC-------EEEEECCCCeEEEEECcCCCCcE
Confidence            35788888888887 89999999999988888774333 78999999996       7778888999999999  88888


Q ss_pred             EEEEecCCCEEEEEEcC----CCcEeC
Q 033738           90 LKTIDVKFPIFSMVRGK----KGFAVF  112 (112)
Q Consensus        90 ~~~~~~~~~v~~~~~~~----~~~~~~  112 (112)
                      +..+..+..+..++|+|    +|+++|
T Consensus       215 ~~~i~~g~~p~~va~sp~~~~dg~~l~  241 (543)
T 1nir_A          215 VAEIKIGIEARSVESSKFKGYEDRYTI  241 (543)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEE
T ss_pred             EEEEecCCCcceEEeCCCcCCCCCEEE
Confidence            88888777889999999    998875

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.46  E-value=8.5e-13  Score=85.56  Aligned_cols=99  Identities=8%  Similarity=-0.015  Sum_probs=71.9

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCc------------------eEEEEEecCCCCccce
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAP------------------VTTVIVVPASTPATKI   66 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~~~~~   66 (112)
                      |...+.. ++|||||+.|++++++.|++||+.+++.......+...                  +..++|+|+++     
T Consensus       112 ~~~~~~~-~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-----  185 (723)
T 1xfd_A          112 SNAKLQY-AGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-----  185 (723)
T ss_dssp             CSCCCSB-CCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-----
T ss_pred             ccccccc-cEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC-----
Confidence            3344666 99999999999999899999999887654443332222                  36899999995     


Q ss_pred             eEEEEeeecC----------------------------------CcEEEEeCCCCceEEEEecC------C-CEEEEEEc
Q 033738           67 LSYCWTASLD----------------------------------ETIKYWDFSTPELLKTIDVK------F-PIFSMVRG  105 (112)
Q Consensus        67 ~~~~~~~~~d----------------------------------~~i~~~~~~~~~~~~~~~~~------~-~v~~~~~~  105 (112)
                        .+++++.+                                  ..+++||+.+++....+..+      . .+..++|+
T Consensus       186 --~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~S  263 (723)
T 1xfd_A          186 --RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA  263 (723)
T ss_dssp             --EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES
T ss_pred             --EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEe
Confidence              33344432                                  27999999988765555543      3 78899999


Q ss_pred             CCCcEe
Q 033738          106 KKGFAV  111 (112)
Q Consensus       106 ~~~~~~  111 (112)
                      |||+.+
T Consensus       264 pDg~~l  269 (723)
T 1xfd_A          264 TSTKVA  269 (723)
T ss_dssp             SSSEEE
T ss_pred             CCCeEE
Confidence            999876

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.45  E-value=1.2e-12  Score=85.15  Aligned_cols=94  Identities=11%  Similarity=0.083  Sum_probs=73.8

Q ss_pred             cCCCeEEcCCCCEEEEEcCCeEEEEeCCCCc--eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738            9 VSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL--QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      +.. ++|||||+.|++++++.|++||+.++.  ....+..+...+..++|+|+++       +++.++ ++.|++||+.+
T Consensus       111 v~~-~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~-------~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          111 IVD-YQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGG-------FVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             SCC-CEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSS-------EEEEEE-TTEEEEEETTT
T ss_pred             cce-eEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCC-------EEEEEe-CCcEEEEecCC
Confidence            666 999999999999988999999998772  3556666778899999999995       444554 56999999998


Q ss_pred             CceEEEEecCC-C----------------EEEEEEcCCCcEe
Q 033738           87 PELLKTIDVKF-P----------------IFSMVRGKKGFAV  111 (112)
Q Consensus        87 ~~~~~~~~~~~-~----------------v~~~~~~~~~~~~  111 (112)
                      ++.......+. .                +..+.|+|||+.|
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l  223 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI  223 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEE
Confidence            87655443332 2                4779999999876

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.45  E-value=1.2e-12  Score=84.86  Aligned_cols=100  Identities=11%  Similarity=-0.006  Sum_probs=72.9

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCC-----CceeeeccccCCc--------------eEEEEEecCCCCcc
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTST-----GLQISSLEGHTAP--------------VTTVIVVPASTPAT   64 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~~~   64 (112)
                      .+...+.. ++|+|||+.|+++.++.|++||+.+     ++.......+...              +..++|+|+++   
T Consensus       118 ~~~~~~~~-~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~---  193 (706)
T 2z3z_A          118 DTNEETAS-LDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS---  193 (706)
T ss_dssp             CCTTCCTT-CEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS---
T ss_pred             CCcccccC-CcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC---
Confidence            34566776 9999999999997799999999987     6544433333222              47899999995   


Q ss_pred             ceeEEEEeee---------------------------------cCCcEEEEeCCCCceEEEEec--C-CCEEEEEEcCCC
Q 033738           65 KILSYCWTAS---------------------------------LDETIKYWDFSTPELLKTIDV--K-FPIFSMVRGKKG  108 (112)
Q Consensus        65 ~~~~~~~~~~---------------------------------~d~~i~~~~~~~~~~~~~~~~--~-~~v~~~~~~~~~  108 (112)
                          ++++++                                 .+..+++||+.+++.......  + ..+..++|+|+|
T Consensus       194 ----~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg  269 (706)
T 2z3z_A          194 ----CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE  269 (706)
T ss_dssp             ----EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS
T ss_pred             ----EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC
Confidence                444554                                 346799999998876544322  2 368899999999


Q ss_pred             cEe
Q 033738          109 FAV  111 (112)
Q Consensus       109 ~~~  111 (112)
                      +.+
T Consensus       270 ~~l  272 (706)
T 2z3z_A          270 NIL  272 (706)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            865

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.45  E-value=5.3e-12  Score=75.41  Aligned_cols=98  Identities=14%  Similarity=0.196  Sum_probs=77.2

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      ...+.. ++|+|+|+.++.++  ++.|.+||..+++....+....  ...++|+|++.      .++++...++.+.+||
T Consensus       230 ~~~~~~-~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~------~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          230 EHFFIN-ISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARN------EAYVTHRQAGKVSVID  300 (353)
T ss_dssp             CCCEEE-EEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTT------EEEEEETTTTEEEEEE
T ss_pred             Ccccce-EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCC------EEEEEECCCCeEEEEE
Confidence            334455 89999999877665  5999999999888776665433  25689999985      2344566789999999


Q ss_pred             CCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           84 FSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      ..+++.+..+..+..+..++|+|+|+.+|
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  329 (353)
T 3vgz_A          301 AKSYKVVKTFDTPTHPNSLALSADGKTLY  329 (353)
T ss_dssp             TTTTEEEEEEECCSEEEEEEECTTSCEEE
T ss_pred             CCCCeEEEEEecCCCCCeEEEcCCCCEEE
Confidence            99999988888777889999999999764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.44  E-value=1e-12  Score=85.50  Aligned_cols=95  Identities=9%  Similarity=0.039  Sum_probs=71.5

Q ss_pred             CCcCCCeEEcCCCCEEEEEc--CC-----eEEEEeCCCCceeeeccccCC------------------------ceEEEE
Q 033738            7 SYVSSPPAFSNDVKRLLVCT--SN-----TVSIFSTSTGLQISSLEGHTA------------------------PVTTVI   55 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~--~~-----~v~~~~~~~~~~~~~~~~~~~------------------------~v~~~~   55 (112)
                      ..+.. ++|+|||+.|++++  ++     .|++||+.+++....+..+..                        .+..++
T Consensus        37 ~~~~~-~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           37 PTLMK-PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCEE-EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCC-ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            34666 99999999999876  56     899999998875554443322                        267899


Q ss_pred             EecCCCCccceeEEEEeeecCCcEEEEeCCCC---ceEEEEecC-CCEEEEEEcCCCcEe
Q 033738           56 VVPASTPATKILSYCWTASLDETIKYWDFSTP---ELLKTIDVK-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~  111 (112)
                      |+|+++       ++++++. +.+++||+.++   ... .+..+ ..+..++|+|||+.|
T Consensus       116 ~SpDg~-------~l~~~~~-~~i~~~d~~~~~~~~~~-~l~~~~~~~~~~~~SPDG~~l  166 (741)
T 2ecf_A          116 WSPDAQ-------RLLFPLG-GELYLYDLKQEGKAAVR-QLTHGEGFATDAKLSPKGGFV  166 (741)
T ss_dssp             ECTTSS-------EEEEEET-TEEEEEESSSCSTTSCC-BCCCSSSCEEEEEECTTSSEE
T ss_pred             ECCCCC-------EEEEEeC-CcEEEEECCCCCcceEE-EcccCCcccccccCCCCCCEE
Confidence            999995       4555554 89999999987   443 34333 489999999999876

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.43  E-value=6.7e-13  Score=77.21  Aligned_cols=102  Identities=12%  Similarity=0.083  Sum_probs=73.9

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCC-CCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC---
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTS-TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD---   76 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d---   76 (112)
                      ..|...+.. ++|+|+|+.++.++  ++.+++|++. .+.....+..+...+..++|+|++.       +++.++.+   
T Consensus       169 ~~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-------~l~~~~~~~~~  240 (297)
T 2ojh_A          169 THGEGRNDG-PDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD-------KVVFVSYDADV  240 (297)
T ss_dssp             CCSSSCEEE-EEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS-------EEEEEEEETTC
T ss_pred             ccCCCcccc-ceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC-------EEEEEEcCCCC
Confidence            345566776 99999999887654  6888888875 3445667777777888999999995       44444443   


Q ss_pred             --------CcEEEEeCCCCceEEE--EecCC-CEEEEEEcCCCcEeC
Q 033738           77 --------ETIKYWDFSTPELLKT--IDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        77 --------~~i~~~~~~~~~~~~~--~~~~~-~v~~~~~~~~~~~~~  112 (112)
                              ..+++||+.+++....  ...+. .+..++|+|+|+.|+
T Consensus       241 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  287 (297)
T 2ojh_A          241 FDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFA  287 (297)
T ss_dssp             CSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEE
T ss_pred             CcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEE
Confidence                    5699999988765433  33434 888899999998763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.42  E-value=2.2e-11  Score=72.74  Aligned_cols=99  Identities=11%  Similarity=0.068  Sum_probs=76.7

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc----cCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG----HTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      ...+.. ++|+|+|+.+++++ ++.+.+||..+++....+..    +...+..++|+|++.      .++++...++.+.
T Consensus       184 ~~~~~~-~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~------~l~~~~~~~~~v~  256 (353)
T 3vgz_A          184 GKMSTG-LALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ------RAFITDSKAAEVL  256 (353)
T ss_dssp             CTTCCC-CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT------EEEEEESSSSEEE
T ss_pred             CCccce-EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC------EEEEEeCCCCEEE
Confidence            344666 99999999998888 89999999998877665543    344567899999985      2334555669999


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      +||..+++.+..+..+.+ ..++|+|+|+.+|
T Consensus       257 ~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~  287 (353)
T 3vgz_A          257 VVDTRNGNILAKVAAPES-LAVLFNPARNEAY  287 (353)
T ss_dssp             EEETTTCCEEEEEECSSC-CCEEEETTTTEEE
T ss_pred             EEECCCCcEEEEEEcCCC-ceEEECCCCCEEE
Confidence            999999998888776554 5689999998654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.40  E-value=3.5e-12  Score=75.78  Aligned_cols=100  Identities=9%  Similarity=-0.033  Sum_probs=71.7

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-C-CeEEEEeCC--CCc--eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-S-NTVSIFSTS--TGL--QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~-~~v~~~~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      |...+.. ++|+|+|+.+++++ + +.+.+|+++  ++.  .+..+.... .+..++|+|++.      .+++++..++.
T Consensus        36 ~~~~~~~-~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~------~l~~~~~~~~~  107 (343)
T 1ri6_A           36 VPGQVQP-MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQ------FVFVGSYNAGN  107 (343)
T ss_dssp             CSSCCCC-EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSS------EEEEEETTTTE
T ss_pred             cCCCCce-EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCC------EEEEEecCCCe
Confidence            4556776 99999999888776 4 999999987  443  233444333 678999999995      12334445889


Q ss_pred             EEEEeCC---CCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           79 IKYWDFS---TPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        79 i~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      +++||+.   .+.....+..+..+.+++|+|+|+.+|
T Consensus       108 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  144 (343)
T 1ri6_A          108 VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW  144 (343)
T ss_dssp             EEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEE
T ss_pred             EEEEECCCCccccccccccCCCCceEEEECCCCCEEE
Confidence            9999994   334455555555788899999998764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.39  E-value=1.9e-12  Score=83.93  Aligned_cols=93  Identities=12%  Similarity=0.023  Sum_probs=69.3

Q ss_pred             cCCCeEEcCCCCEEEEEc-C---------CeEEEEeCCCCceeeecc---ccCCceEEEEEecCCCCccceeEEEEeeec
Q 033738            9 VSSPPAFSNDVKRLLVCT-S---------NTVSIFSTSTGLQISSLE---GHTAPVTTVIVVPASTPATKILSYCWTASL   75 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~---------~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   75 (112)
                      +.. ++|||||+.|++++ +         +.+++||+.+++. ..+.   .+...+..++|||+++       .++.++.
T Consensus        63 v~~-~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~-------~la~~~~  133 (723)
T 1xfd_A           63 AIR-YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ-------QLIFIFE  133 (723)
T ss_dssp             CSE-EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT-------CEEEEET
T ss_pred             cce-EEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC-------EEEEEEC
Confidence            776 99999999999886 3         6789999988764 3333   3334478899999995       4445554


Q ss_pred             CCcEEEEeCCCCceEEEEecCC-CE------------------EEEEEcCCCcEe
Q 033738           76 DETIKYWDFSTPELLKTIDVKF-PI------------------FSMVRGKKGFAV  111 (112)
Q Consensus        76 d~~i~~~~~~~~~~~~~~~~~~-~v------------------~~~~~~~~~~~~  111 (112)
                       +.|++||..+++.......+. .+                  .+++|+|||+.|
T Consensus       134 -~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l  187 (723)
T 1xfd_A          134 -NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL  187 (723)
T ss_dssp             -TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred             -CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEE
Confidence             799999999887766554432 33                  689999999876

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.38  E-value=8.9e-13  Score=83.93  Aligned_cols=92  Identities=7%  Similarity=-0.081  Sum_probs=71.7

Q ss_pred             CCCeEEcCCCCEEEEEc-C----CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC--cEEEE
Q 033738           10 SSPPAFSNDVKRLLVCT-S----NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE--TIKYW   82 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~-~----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~~~   82 (112)
                      .. ++|+|||+.+++++ +    ..|++||+.+++ ...+..+.+.+...+|+|+++       .++++..++  .|++|
T Consensus       153 ~~-~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~~l~~~~~~~~~~~~SpDG~-------~l~~~~~~~~~~i~~~  223 (582)
T 3o4h_A          153 FG-FVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LRVFDSGEGSFSSASISPGMK-------VTAGLETAREARLVTV  223 (582)
T ss_dssp             CE-EEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CEEECCSSCEEEEEEECTTSC-------EEEEEECSSCEEEEEE
T ss_pred             ce-EEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ceEeecCCCccccceECCCCC-------EEEEccCCCeeEEEEE
Confidence            44 89999999999776 5    679999998876 456677778889999999995       555777787  89999


Q ss_pred             eCCCCceEEEEecCC-CEEEEE--------EcCCCcEe
Q 033738           83 DFSTPELLKTIDVKF-PIFSMV--------RGKKGFAV  111 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~-~v~~~~--------~~~~~~~~  111 (112)
                      |+.+++.. .+..+. .+..+.        |+|||..+
T Consensus       224 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~  260 (582)
T 3o4h_A          224 DPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLA  260 (582)
T ss_dssp             CTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred             cCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEE
Confidence            99988876 554443 555556        99999544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.37  E-value=8.2e-13  Score=85.75  Aligned_cols=92  Identities=17%  Similarity=0.282  Sum_probs=67.9

Q ss_pred             eEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCC---ceEEEEEecCCCCccceeEEEEeeec---------CCcEE
Q 033738           13 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTA---PVTTVIVVPASTPATKILSYCWTASL---------DETIK   80 (112)
Q Consensus        13 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~---------d~~i~   80 (112)
                      ++|+|||++++++.|+.|++||+.+++....+..+..   .+..++|||+++       +++.++.         ++.++
T Consensus        21 ~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~-------~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           21 PNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQ-------FVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSS-------EEEEEEEEEECSSSCEEEEEE
T ss_pred             cEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCC-------eEEEEecCceeEEeecceEEE
Confidence            8999999766555589999999998876555544332   378999999995       4445544         68999


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +||+.+++.+........+..++|+|||+.|
T Consensus        94 ~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~l  124 (719)
T 1z68_A           94 IYDLSNGEFVRGNELPRPIQYLCWSPVGSKL  124 (719)
T ss_dssp             EEETTTTEECCSSCCCSSBCCEEECSSTTCE
T ss_pred             EEECCCCccccceecCcccccceECCCCCEE
Confidence            9999988763111223468889999999865

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.36  E-value=4.3e-11  Score=76.14  Aligned_cols=94  Identities=11%  Similarity=0.103  Sum_probs=75.5

Q ss_pred             cCCCeEEcCCCCEEEEEc-CCeEEEEeC--CCCceeeeccccCCceEEEEEec----CCCCccceeEEEEeee-cCCcEE
Q 033738            9 VSSPPAFSNDVKRLLVCT-SNTVSIFST--STGLQISSLEGHTAPVTTVIVVP----ASTPATKILSYCWTAS-LDETIK   80 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~-~d~~i~   80 (112)
                      +.. ++++|||+++++++ ++.|.+||+  .+++.+..+.. ......++|+|    +++       ++++++ .++.+.
T Consensus       181 ~~~-v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~-------~l~v~~~~~~~v~  251 (543)
T 1nir_A          181 VHI-SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDR-------YTIAGAYWPPQFA  251 (543)
T ss_dssp             EEE-EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTT-------EEEEEEEESSEEE
T ss_pred             cce-EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCC-------EEEEEEccCCeEE
Confidence            555 88999999999998 899999999  77877777763 45578999999    985       444555 589999


Q ss_pred             EEeCCCCceEEEEecC-----------C-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVK-----------F-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~-----------~-~v~~~~~~~~~~~~  111 (112)
                      +||..+++++..+...           . .+..+.++|++..+
T Consensus       252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence            9999999988887642           2 68889999987654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.36  E-value=1.7e-11  Score=72.67  Aligned_cols=97  Identities=11%  Similarity=0.109  Sum_probs=73.3

Q ss_pred             CcCCCeEEcCCCCEEEEE-c-CCeEEEEeCCCCceeeeccccC-----CceEEEEEecCCCCccceeEEEEeee------
Q 033738            8 YVSSPPAFSNDVKRLLVC-T-SNTVSIFSTSTGLQISSLEGHT-----APVTTVIVVPASTPATKILSYCWTAS------   74 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~-~-~~~v~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~------   74 (112)
                      .+.. ++|+|+|+.++.+ . ++.|.+||+.+++....+....     ..+..++|+|++.       +++.+.      
T Consensus        35 ~~~~-~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-------~l~~~~~~~~~~  106 (337)
T 1pby_B           35 TPMV-PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK-------TLAIYESPVRLE  106 (337)
T ss_dssp             CCCC-EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS-------EEEEEEEEEEEC
T ss_pred             Cccc-eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCC-------EEEEEecccccc
Confidence            3566 9999999876544 4 6899999999887666554321     1456889999985       333443      


Q ss_pred             ------cCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           75 ------LDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        75 ------~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                            .++.+++||..+++.+..+.....+..++|+|+|+++|
T Consensus       107 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  150 (337)
T 1pby_B          107 LTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY  150 (337)
T ss_dssp             SSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEE
T ss_pred             cccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEE
Confidence                  47999999999988888877766788899999998654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.35  E-value=2.1e-11  Score=72.47  Aligned_cols=97  Identities=14%  Similarity=0.154  Sum_probs=71.3

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCe-EEEEeCCCCcee----eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNT-VSIFSTSTGLQI----SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~-v~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      ... ++|+|||+.+++++  ++. +.+|++.....+    ............++|+|+++      .++++...++.+++
T Consensus       130 ~~~-~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~------~l~v~~~~~~~v~v  202 (331)
T 3u4y_A          130 AVG-IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGN------FAFVANLIGNSIGI  202 (331)
T ss_dssp             EEE-EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSS------EEEEEETTTTEEEE
T ss_pred             ccc-eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCC------EEEEEeCCCCeEEE
Confidence            355 89999998666554  577 999998753222    11112344578999999995      23446667899999


Q ss_pred             EeCCCCce---EEEEecCCCEEEEEEcCCCcEeC
Q 033738           82 WDFSTPEL---LKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      ||+.+++.   +..+..+..+..++|+|+|+++|
T Consensus       203 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  236 (331)
T 3u4y_A          203 LETQNPENITLLNAVGTNNLPGTIVVSRDGSTVY  236 (331)
T ss_dssp             EECSSTTSCEEEEEEECSSCCCCEEECTTSSEEE
T ss_pred             EECCCCcccceeeeccCCCCCceEEECCCCCEEE
Confidence            99998888   77777767788999999999664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.33  E-value=1.5e-11  Score=83.03  Aligned_cols=98  Identities=12%  Similarity=-0.017  Sum_probs=79.0

Q ss_pred             CCCC-CcCCCeEEcCCCCEEEEEc-CCeEE-EEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            4 GGRS-YVSSPPAFSNDVKRLLVCT-SNTVS-IFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         4 ~h~~-~v~~~~~~~~~~~~l~~~~-~~~v~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      .|.. .+.. ++|+ ||+.+++++ +..+. +|+...++. ..+..+...+..++|+|++.       ++++++.++.++
T Consensus       334 ~~~~~~~~~-~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~-~~l~~~~~~~~~~~~SpDG~-------~la~~~~~~~v~  403 (1045)
T 1k32_A          334 EPLRIRYVR-RGGD-TKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGK-------FAVVANDRFEIM  403 (1045)
T ss_dssp             CCSCEEEEE-ECSS-SEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSS-------EEEEEETTSEEE
T ss_pred             CCCcceEEe-eeEc-CCCeEEEEECCCceEEEEECCCCCc-eEecCCccceeeeEECCCCC-------EEEEECCCCeEE
Confidence            3445 5666 8899 999998887 67888 899887653 44446777899999999995       667888999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +||+.+++.......+. .+.+++|+|+|+++
T Consensus       404 ~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~l  435 (1045)
T 1k32_A          404 TVDLETGKPTVIERSREAMITDFTISDNSRFI  435 (1045)
T ss_dssp             EEETTTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred             EEECCCCceEEeccCCCCCccceEECCCCCeE
Confidence            99999998877775555 78999999999876

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.32  E-value=1.6e-11  Score=80.29  Aligned_cols=96  Identities=14%  Similarity=0.142  Sum_probs=70.9

Q ss_pred             CCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCc-----eEEEEEecCCCCccceeEEEEeeecC-----
Q 033738            7 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAP-----VTTVIVVPASTPATKILSYCWTASLD-----   76 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~~~~~~~~d-----   76 (112)
                      ..... +.|+|||++++++ |+.|++||+.+++....+..+...     ....+|||++.       +++.++.+     
T Consensus        17 ~~~~~-~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~-------~l~~~~~~~~~~r   87 (740)
T 4a5s_A           17 LKLYS-LRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-------FILLEYNYVKQWR   87 (740)
T ss_dssp             CCCCC-EEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS-------EEEEEEEEEECSS
T ss_pred             ccccc-cEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC-------EEEEEECCeeeEE
Confidence            34555 9999999988887 999999999998766555554432     23478999995       44455543     


Q ss_pred             ----CcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           77 ----ETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        77 ----~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                          +.+.+||+.+++..........+..++|+|||+.|
T Consensus        88 ~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~l  126 (740)
T 4a5s_A           88 HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKL  126 (740)
T ss_dssp             SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCE
T ss_pred             EccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEE
Confidence                56789999998765433334489999999999865

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.31  E-value=4.4e-11  Score=71.27  Aligned_cols=94  Identities=14%  Similarity=0.136  Sum_probs=72.8

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccC-CceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHT-APVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL   90 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~   90 (112)
                      +++++++..+++++ ++.|++||..+++....+.... ..+..++|+|++.      .++++...++.+++||..+++.+
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~------~~~v~~~~~~~i~~~d~~t~~~~   78 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR------TAYVLNNHYGDIYGIDLDTCKNT   78 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS------EEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCC------EEEEEeCCCCcEEEEeCCCCcEE
Confidence            66788888888887 8999999999887776665433 1467899999985      23446667899999999999887


Q ss_pred             EEEecCC-------CEEEEEEcCCCcEeC
Q 033738           91 KTIDVKF-------PIFSMVRGKKGFAVF  112 (112)
Q Consensus        91 ~~~~~~~-------~v~~~~~~~~~~~~~  112 (112)
                      ..+..+.       .+..++|+|+|+++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~  107 (349)
T 1jmx_B           79 FHANLSSVPGEVGRSMYSFAISPDGKEVY  107 (349)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred             EEEEcccccccccccccceEECCCCCEEE
Confidence            7776433       277899999998764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.29  E-value=1.6e-10  Score=69.59  Aligned_cols=96  Identities=13%  Similarity=0.140  Sum_probs=66.5

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCce--eeec---cccCCceEEEEEecCCCCccceeEEE-Eeeec-CCcE
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQ--ISSL---EGHTAPVTTVIVVPASTPATKILSYC-WTASL-DETI   79 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~-d~~i   79 (112)
                      ... ++|+|||+.++.++  ++.|.+|++.++..  +..+   ..+......++|+|+++       ++ ++... ++.+
T Consensus       213 ~~~-~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~-------~l~v~~~~~~~~i  284 (361)
T 3scy_A          213 PRH-LIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK-------YLYASNRLKADGV  284 (361)
T ss_dssp             EEE-EEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS-------EEEEEECSSSCEE
T ss_pred             CeE-EEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC-------EEEEECCCCCCEE
Confidence            445 89999999887665  79999999986643  2222   22334467999999995       44 34444 5899


Q ss_pred             EEEeCC--CCc--eEEEEecCCCEEEEEEcCCCcEeC
Q 033738           80 KYWDFS--TPE--LLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      .+|++.  ++.  .+..+.....+..++|+|+|+++|
T Consensus       285 ~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~  321 (361)
T 3scy_A          285 AIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLL  321 (361)
T ss_dssp             EEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEE
T ss_pred             EEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEE
Confidence            999985  454  334444434778899999998764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.28  E-value=9.8e-12  Score=79.18  Aligned_cols=96  Identities=15%  Similarity=0.039  Sum_probs=73.3

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CC--eEEEEeCCCCceeeeccccCCceEEEE--------EecCCCCccceeEEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SN--TVSIFSTSTGLQISSLEGHTAPVTTVI--------VVPASTPATKILSYC   70 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~~   70 (112)
                      +.+|.+.+.. ++|||||+.|+++. ++  .|++||+++++.. .+..+...+..++        |+|++.       ++
T Consensus       190 l~~~~~~~~~-~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~-------~~  260 (582)
T 3o4h_A          190 FDSGEGSFSS-ASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGR-------LA  260 (582)
T ss_dssp             ECCSSCEEEE-EEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSC-------EE
T ss_pred             eecCCCcccc-ceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCc-------EE
Confidence            3456677776 99999999999665 66  8999999988765 6666666666666        999995       67


Q ss_pred             EeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           71 WTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        71 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ++++.++.+++|++  |+...  .....+.+++|+ +|+.+
T Consensus       261 ~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l  296 (582)
T 3o4h_A          261 VVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLV  296 (582)
T ss_dssp             EEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEE
T ss_pred             EEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEE
Confidence            78999999999999  65544  122367888888 77765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.28  E-value=1.9e-10  Score=68.89  Aligned_cols=100  Identities=10%  Similarity=0.128  Sum_probs=68.7

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCC-Cc--eeeeccc---------cCCceEEEEEecCCCCccceeEEE
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTST-GL--QISSLEG---------HTAPVTTVIVVPASTPATKILSYC   70 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~-~~--~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~   70 (112)
                      +...+.. ++|+|||+.|++++  ++.+.+|++.. +.  .+..+..         ....+.+++|+|+++       ++
T Consensus        84 ~~~~p~~-~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-------l~  155 (347)
T 3hfq_A           84 PGTPPAY-VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-------LA  155 (347)
T ss_dssp             ESCCCSE-EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-------EE
T ss_pred             CCCCCEE-EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-------EE
Confidence            4456666 99999999888776  69999999853 32  2222221         112477899999994       45


Q ss_pred             EeeecCCcEEEEeCC-CCceEEE--Eec--CCCEEEEEEcCCCcEeC
Q 033738           71 WTASLDETIKYWDFS-TPELLKT--IDV--KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        71 ~~~~~d~~i~~~~~~-~~~~~~~--~~~--~~~v~~~~~~~~~~~~~  112 (112)
                      ++...++.+++|++. +++....  +..  ......++|+|+|+++|
T Consensus       156 v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~  202 (347)
T 3hfq_A          156 VIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAF  202 (347)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             EEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEE
Confidence            577778899999998 5543322  222  22678899999998664

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.28  E-value=6.5e-11  Score=70.32  Aligned_cols=96  Identities=13%  Similarity=0.140  Sum_probs=67.5

Q ss_pred             CcCCCeEEcCCCCEEEEEc--CCeEEEEeCC---CCceeeeccccCCceEEEEEecCCCCccceeEEEEeee-cCCcEEE
Q 033738            8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTS---TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS-LDETIKY   81 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~   81 (112)
                      .+.. ++|+|+|+.+++++  ++.|.+||+.   ..+....+.. ...+.+++|+|++.       ++++++ .++.+++
T Consensus        85 ~~~~-~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-------~l~~~~~~~~~v~~  155 (343)
T 1ri6_A           85 SLTH-ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNR-------TLWVPALKQDRICL  155 (343)
T ss_dssp             CCSE-EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSS-------EEEEEEGGGTEEEE
T ss_pred             CCcE-EEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCC-------EEEEecCCCCEEEE
Confidence            5565 89999999886664  7899999994   3333334433 34578899999985       333444 8899999


Q ss_pred             EeCCC-CceEE----EEec--CCCEEEEEEcCCCcEeC
Q 033738           82 WDFST-PELLK----TIDV--KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~-~~~~~----~~~~--~~~v~~~~~~~~~~~~~  112 (112)
                      ||+.+ ++...    ....  ...+..++|+|+|+++|
T Consensus       156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~  193 (343)
T 1ri6_A          156 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  193 (343)
T ss_dssp             EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             EEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence            99987 65432    2222  23788899999998663

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.28  E-value=1.2e-11  Score=80.11  Aligned_cols=95  Identities=6%  Similarity=-0.111  Sum_probs=71.0

Q ss_pred             CCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738            7 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      ..+.. ++|+|| +.++.+.++.+++||+.+++. ..+..+...+..++|+|+++       .++. ..++.|++||+.+
T Consensus        82 ~~v~~-~~~spd-~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~SpdG~-------~la~-~~~~~i~v~~~~~  150 (706)
T 2z3z_A           82 FPSFR-TLDAGR-GLVVLFTQGGLVGFDMLARKV-TYLFDTNEETASLDFSPVGD-------RVAY-VRNHNLYIARGGK  150 (706)
T ss_dssp             CCCEE-EEETTT-TEEEEEETTEEEEEETTTTEE-EEEECCTTCCTTCEECTTSS-------EEEE-EETTEEEEEECBC
T ss_pred             cCcee-EEECCC-CeEEEEECCEEEEEECCCCce-EEccCCcccccCCcCCCCCC-------EEEE-EECCeEEEEecCc
Confidence            35776 999999 777777789999999988754 44444556678899999995       4445 3679999999988


Q ss_pred             -----CceEEEEecCC-C--------------EEEEEEcCCCcEeC
Q 033738           87 -----PELLKTIDVKF-P--------------IFSMVRGKKGFAVF  112 (112)
Q Consensus        87 -----~~~~~~~~~~~-~--------------v~~~~~~~~~~~~~  112 (112)
                           ++.......+. .              +.++.|+|||+.|+
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la  196 (706)
T 2z3z_A          151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA  196 (706)
T ss_dssp             TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE
T ss_pred             ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE
Confidence                 76654443333 2              47899999998763

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.27  E-value=5.1e-11  Score=76.77  Aligned_cols=98  Identities=10%  Similarity=0.040  Sum_probs=70.8

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-C----------CeEEEEeCCC------Cceeeecc-ccCCceEEEEEecCCCCccce
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-S----------NTVSIFSTST------GLQISSLE-GHTAPVTTVIVVPASTPATKI   66 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~----------~~v~~~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~   66 (112)
                      |...+.. ++|+|||+.|++++ +          ..|++||+.+      ++ ...+. .+...+..++|+|+++     
T Consensus       128 ~~~~~~~-~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~-----  200 (662)
T 3azo_A          128 GGLRWAD-PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGR-----  200 (662)
T ss_dssp             TCEEEEE-EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSS-----
T ss_pred             CCccccC-cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCC-----
Confidence            3445565 89999999998887 5          5899999987      54 45555 5556677889999995     


Q ss_pred             eEEEEeeecC--------CcEEEEeCC-CC---ceEEEEecC-CCEEEEEEcCCCcEe
Q 033738           67 LSYCWTASLD--------ETIKYWDFS-TP---ELLKTIDVK-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        67 ~~~~~~~~~d--------~~i~~~~~~-~~---~~~~~~~~~-~~v~~~~~~~~~~~~  111 (112)
                        +++..+.+        ..|++||+. ++   +.......+ ..+..+.|+|||+++
T Consensus       201 --~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~  256 (662)
T 3azo_A          201 --QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLI  256 (662)
T ss_dssp             --EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEE
T ss_pred             --EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEE
Confidence              44444433        479999998 56   444444443 488999999999854

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.26  E-value=1.4e-11  Score=79.98  Aligned_cols=97  Identities=9%  Similarity=0.048  Sum_probs=67.1

Q ss_pred             CCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeec-cccCCce-----------------EEEEEecCCCCccceeE
Q 033738            7 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSL-EGHTAPV-----------------TTVIVVPASTPATKILS   68 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~~~~~~   68 (112)
                      ..+.. ++|||||+.|+++.++.|++|++.+++..... .++...+                 ..++|+|+++       
T Consensus       110 ~~~~~-~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-------  181 (719)
T 1z68_A          110 RPIQY-LCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK-------  181 (719)
T ss_dssp             SSBCC-EEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS-------
T ss_pred             ccccc-ceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCC-------
Confidence            34666 99999999999999999999999887644322 1222212                 4799999995       


Q ss_pred             EEEeeecCC----------------------------------cEEEEeCCCCceE--EEE------ecCC-CEEEEEEc
Q 033738           69 YCWTASLDE----------------------------------TIKYWDFSTPELL--KTI------DVKF-PIFSMVRG  105 (112)
Q Consensus        69 ~~~~~~~d~----------------------------------~i~~~~~~~~~~~--~~~------~~~~-~v~~~~~~  105 (112)
                      ++++++.|.                                  .+++||+.+++..  ..+      ..+. .+..++|+
T Consensus       182 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  261 (719)
T 1z68_A          182 FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV  261 (719)
T ss_dssp             EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES
T ss_pred             EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe
Confidence            444554331                                  7889999887642  121      1233 68899999


Q ss_pred             CCCcEe
Q 033738          106 KKGFAV  111 (112)
Q Consensus       106 ~~~~~~  111 (112)
                      ||++.+
T Consensus       262 pD~~~~  267 (719)
T 1z68_A          262 TDERVC  267 (719)
T ss_dssp             SSSEEE
T ss_pred             CCCeEE
Confidence            998765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.24  E-value=8.2e-11  Score=70.12  Aligned_cols=94  Identities=7%  Similarity=0.060  Sum_probs=67.8

Q ss_pred             CcCCCeEEcCCCCEEEEE-c-CCeEEEEeCCCCceeeeccccC------CceEEEEEecCCCCccceeEEEEeeec----
Q 033738            8 YVSSPPAFSNDVKRLLVC-T-SNTVSIFSTSTGLQISSLEGHT------APVTTVIVVPASTPATKILSYCWTASL----   75 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~-~-~~~v~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~----   75 (112)
                      .+.. ++|+|+|+.++.+ . ++.|.+||+.+++....+....      ..+..++|+|+++       ++++++.    
T Consensus        44 ~~~~-~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-------~l~~~~~~~~~  115 (349)
T 1jmx_B           44 GPGT-AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK-------EVYATVNPTQR  115 (349)
T ss_dssp             SSCE-EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS-------EEEEEEEEEEE
T ss_pred             CCce-eEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCC-------EEEEEcccccc
Confidence            3555 8999999866544 4 7999999999887665554322      2257889999995       4445554    


Q ss_pred             --------CCcEEEEeCCCCc---eEEEEecCCCEEEEEEcCCCc
Q 033738           76 --------DETIKYWDFSTPE---LLKTIDVKFPIFSMVRGKKGF  109 (112)
Q Consensus        76 --------d~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~  109 (112)
                              ++.+.+||+.+++   .+.....+..+.+++|+|+|+
T Consensus       116 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  160 (349)
T 1jmx_B          116 LNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS  160 (349)
T ss_dssp             CSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred             cccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence                    3899999998743   334455555788899999998

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.22  E-value=3.5e-10  Score=68.11  Aligned_cols=95  Identities=11%  Similarity=0.129  Sum_probs=64.7

Q ss_pred             CCCeEEcCCCCEEEEEc--CCeEEEEeCCCCce------e-------eeccccCCceEEEEEecCCCCccceeEEEE-ee
Q 033738           10 SSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQ------I-------SSLEGHTAPVTTVIVVPASTPATKILSYCW-TA   73 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~   73 (112)
                      .+ ++|+|||+.++.++  ++.+.+|++.....      +       ............++|+|+++       +++ +.
T Consensus       158 ~~-~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~-------~l~v~~  229 (361)
T 3scy_A          158 HC-VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK-------FAYLIN  229 (361)
T ss_dssp             EE-EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS-------EEEEEE
T ss_pred             eE-EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC-------EEEEEc
Confidence            44 89999999776654  68999998864321      1       11122344567899999995       333 44


Q ss_pred             ecCCcEEEEeCCCCceE--EEEecC----CCEEEEEEcCCCcEeC
Q 033738           74 SLDETIKYWDFSTPELL--KTIDVK----FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        74 ~~d~~i~~~~~~~~~~~--~~~~~~----~~v~~~~~~~~~~~~~  112 (112)
                      ..++.+.+|++.++...  ..+...    .....++|+|+|+++|
T Consensus       230 ~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~  274 (361)
T 3scy_A          230 EIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLY  274 (361)
T ss_dssp             TTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEE
T ss_pred             CCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEE
Confidence            46899999999877542  223221    2467999999999774

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.19  E-value=1.3e-09  Score=66.02  Aligned_cols=104  Identities=12%  Similarity=-0.075  Sum_probs=70.7

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEE--EecCCCCccceeEEEE---------
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVI--VVPASTPATKILSYCW---------   71 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~---------   71 (112)
                      ++...+.. +.|+|||+.|+.++ ++.+++||+.+++.......+...+....  +++++.   .++....         
T Consensus        78 ~~~~~~~~-~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~---~l~~~~~~~~~~~~~~  153 (388)
T 3pe7_A           78 GRGDNTFG-GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT---KLVGIEIRREDWVPLT  153 (388)
T ss_dssp             SSCBCSSS-CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS---EEEEEEEEGGGCCCCC
T ss_pred             CCCCCccc-eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCC---eeccccccCccccccc
Confidence            34444445 89999999999888 78999999998875555544444443333  477774   2221000         


Q ss_pred             ---------eeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcC-CCcEe
Q 033738           72 ---------TASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGK-KGFAV  111 (112)
Q Consensus        72 ---------~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  111 (112)
                               ....+..|++||+.+++..........+..+.|+| +|+.|
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l  203 (388)
T 3pe7_A          154 DWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTV  203 (388)
T ss_dssp             SHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEE
T ss_pred             ccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEE
Confidence                     12234679999999987766655555889999999 98765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.18  E-value=6.1e-10  Score=67.45  Aligned_cols=95  Identities=14%  Similarity=0.058  Sum_probs=67.8

Q ss_pred             cCCCeEEcCCCCEEEEEc--CC--eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            9 VSSPPAFSNDVKRLLVCT--SN--TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      +.. ++|+|||+.|+..+  ++  .|.+||+.+++.......+...+....|+|+++       .++....++.+++||+
T Consensus        38 ~~~-~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~-------~l~~~~~~~~l~~~d~  109 (388)
T 3pe7_A           38 FYQ-KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD-------ALFYVKDGRNLMRVDL  109 (388)
T ss_dssp             TTS-CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS-------EEEEEETTTEEEEEET
T ss_pred             hcC-ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC-------EEEEEeCCCeEEEEEC
Confidence            444 78999999988776  44  589999988875554444444444678999995       5667778889999999


Q ss_pred             CCCceEEEEecCC-CEEEE--EEcCCCcEe
Q 033738           85 STPELLKTIDVKF-PIFSM--VRGKKGFAV  111 (112)
Q Consensus        85 ~~~~~~~~~~~~~-~v~~~--~~~~~~~~~  111 (112)
                      .+++.......+. .+...  .++|++..+
T Consensus       110 ~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l  139 (388)
T 3pe7_A          110 ATLEENVVYQVPAEWVGYGTWVANSDCTKL  139 (388)
T ss_dssp             TTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred             CCCcceeeeechhhcccccceeECCCCCee
Confidence            9988776666554 33333  347887654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.18  E-value=1.1e-10  Score=75.97  Aligned_cols=100  Identities=14%  Similarity=0.076  Sum_probs=66.5

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc------CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT------SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      +|...+.. ++|||||+.|+.+.      +..|++||+.+++....-.........++|+|++.       .++..+.+.
T Consensus       118 ~~~~~~~~-~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~-------~l~~~~~d~  189 (695)
T 2bkl_A          118 DGTVSLGT-WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSK-------GFYYEWLPT  189 (695)
T ss_dssp             SSCEEEEE-EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSS-------EEEEEECCC
T ss_pred             CCCEEEEE-EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCC-------EEEEEEecC
Confidence            34445665 89999999998442      26899999998875411111111125789999995       444555554


Q ss_pred             c-------------EEEEeCCCCce--EEEEec--C-CCEEEEEEcCCCcEe
Q 033738           78 T-------------IKYWDFSTPEL--LKTIDV--K-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        78 ~-------------i~~~~~~~~~~--~~~~~~--~-~~v~~~~~~~~~~~~  111 (112)
                      .             |++|++.++..  ...+..  + ..+..+.|+|+|++|
T Consensus       190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l  241 (695)
T 2bkl_A          190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYL  241 (695)
T ss_dssp             CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCE
T ss_pred             CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEE
Confidence            4             99999988762  223322  3 378899999999876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.18  E-value=3e-10  Score=67.33  Aligned_cols=87  Identities=17%  Similarity=0.158  Sum_probs=66.1

Q ss_pred             CEEEEEc-CCeEEEEeCCCCceeeeccccCC--ceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC
Q 033738           20 KRLLVCT-SNTVSIFSTSTGLQISSLEGHTA--PVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK   96 (112)
Q Consensus        20 ~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~   96 (112)
                      +++++++ ++.|.+||..+++....+.....  .+..++|+|++.      .++++...++.|.+||..+++.+..+...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~------~l~v~~~~~~~v~~~d~~~~~~~~~~~~~   75 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR------IAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSS------EEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCC------EEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence            3567776 89999999998877766653321  467899999985      23456677899999999999888777653


Q ss_pred             C------CEEEEEEcCCCcEeC
Q 033738           97 F------PIFSMVRGKKGFAVF  112 (112)
Q Consensus        97 ~------~v~~~~~~~~~~~~~  112 (112)
                      .      .+..++|+|+|+.+|
T Consensus        76 ~~~~~~~~~~~~~~s~dg~~l~   97 (337)
T 1pby_B           76 TPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEE
T ss_pred             CcccccccccceEECCCCCEEE
Confidence            3      567889999998764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.18  E-value=4.4e-10  Score=67.33  Aligned_cols=95  Identities=13%  Similarity=0.076  Sum_probs=65.4

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc----CCeEEEEeCCCCc--eeeeccccCCceEEEEEecCCCCccceeEEEEeee-cCCc
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT----SNTVSIFSTSTGL--QISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS-LDET   78 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~----~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~d~~   78 (112)
                      ...... ++|+|||+ +++++    ++.|.+|++.++.  .+..+..+...+..++|+|+++       ++++++ .++.
T Consensus        39 ~~~p~~-~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~-------~l~~~~~~~~~  109 (347)
T 3hfq_A           39 TQNPTY-LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ-------LVYSANYHKGT  109 (347)
T ss_dssp             CSCCCC-EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT-------EEEEEETTTTE
T ss_pred             cCCcce-EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC-------EEEEEeCCCCE
Confidence            345566 99999999 55443    3799999997654  3334344566778999999995       444555 7899


Q ss_pred             EEEEeCC-CCc--eEEEEecC----------CCEEEEEEcCCCc
Q 033738           79 IKYWDFS-TPE--LLKTIDVK----------FPIFSMVRGKKGF  109 (112)
Q Consensus        79 i~~~~~~-~~~--~~~~~~~~----------~~v~~~~~~~~~~  109 (112)
                      +.+|++. ++.  .+..+...          ..+.+++|+|+|+
T Consensus       110 v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~  153 (347)
T 3hfq_A          110 AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR  153 (347)
T ss_dssp             EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC
T ss_pred             EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc
Confidence            9999985 333  22333221          1378899999998

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.18  E-value=1.2e-09  Score=66.35  Aligned_cols=87  Identities=16%  Similarity=0.241  Sum_probs=69.7

Q ss_pred             eEEcCCCCEEEEEc------------CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738           13 PAFSNDVKRLLVCT------------SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus        13 ~~~~~~~~~l~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      ++++|+++.++.+.            .+.|.+||+.+++.+..+..+.  ...++++|+++       ++++++. +.+.
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~-------~l~v~n~-~~v~  328 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRN-------LMLTLDG-GNVN  328 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTT-------EEEEECS-SCEE
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCC-------EEEEeCC-CeEE
Confidence            68899988776542            2489999999998888887665  78999999995       4445555 9999


Q ss_pred             EEeCCCC--ceEEEEe-cCCCEEEEEEcCCCc
Q 033738           81 YWDFSTP--ELLKTID-VKFPIFSMVRGKKGF  109 (112)
Q Consensus        81 ~~~~~~~--~~~~~~~-~~~~v~~~~~~~~~~  109 (112)
                      +||..++  +.+..+. .......+.++|+|.
T Consensus       329 v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          329 VYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            9999999  8888874 445778899999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.18  E-value=2.4e-10  Score=74.82  Aligned_cols=90  Identities=11%  Similarity=-0.052  Sum_probs=66.2

Q ss_pred             eEEcCCCCEEEEEc-C---------CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738           13 PAFSNDVKRLLVCT-S---------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~---------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      ..|||||+.|+.++ +         +.+.+||+.+++ ...+..+...+...+|||+++       .++.+ .++.|++|
T Consensus        67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~-~~~l~~~~~~~~~~~~SPdG~-------~la~~-~~~~i~~~  137 (740)
T 4a5s_A           67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGH-------KLAYV-WNNDIYVK  137 (740)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTT-------CEEEE-ETTEEEEE
T ss_pred             eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc-EEEcccCCCcceeeEECCCCC-------EEEEE-ECCeEEEE
Confidence            57899999998887 3         567899999886 455666677899999999995       33344 56899999


Q ss_pred             eCCCCceEEEEecCC--CE-----------------EEEEEcCCCcEe
Q 033738           83 DFSTPELLKTIDVKF--PI-----------------FSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~--~v-----------------~~~~~~~~~~~~  111 (112)
                      +..++...+......  .+                 ..+.|+|||+.|
T Consensus       138 ~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~l  185 (740)
T 4a5s_A          138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL  185 (740)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE
T ss_pred             ECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEE
Confidence            998877544322111  12                 248999999876

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.15  E-value=3.6e-10  Score=73.72  Aligned_cols=96  Identities=10%  Similarity=0.046  Sum_probs=65.5

Q ss_pred             CcCCCeEEcCCCCEEEEEc--CC----eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc---
Q 033738            8 YVSSPPAFSNDVKRLLVCT--SN----TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET---   78 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~~----~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~---   78 (112)
                      .+.. ++|||||+.|+.+.  +|    .|++||+.+++.......+ ..+..++|+||++       .++.+..++.   
T Consensus       126 ~~~~-~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~-------~l~~~~~~~~~~~  196 (710)
T 2xdw_A          126 ALRG-YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGK-------GMFYNAYPQQDGK  196 (710)
T ss_dssp             EEEE-EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSS-------EEEEEECCCCSSC
T ss_pred             EEEE-EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCC-------EEEEEEECCcccc
Confidence            4555 89999999998775  22    8999999988755422222 2256789999995       3334444433   


Q ss_pred             -------------EEEEeCCCCceE--EEEecC--C-CEEEEEEcCCCcEeC
Q 033738           79 -------------IKYWDFSTPELL--KTIDVK--F-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        79 -------------i~~~~~~~~~~~--~~~~~~--~-~v~~~~~~~~~~~~~  112 (112)
                                   |++|++.++...  ......  . .+..+.|+|+|++|+
T Consensus       197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~  248 (710)
T 2xdw_A          197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVL  248 (710)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred             ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEE
Confidence                         999999877532  232322  2 578899999998763

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.11  E-value=1.5e-09  Score=69.97  Aligned_cols=101  Identities=11%  Similarity=0.123  Sum_probs=67.7

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-C--------CeEEEEeCC-CC--ceeeecc-ccCCceEEEEEecCCCCccceeEEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-S--------NTVSIFSTS-TG--LQISSLE-GHTAPVTTVIVVPASTPATKILSYC   70 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~--------~~v~~~~~~-~~--~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~   70 (112)
                      .+...+.. ++|||||+.|+..+ +        ..|++||+. ++  .....+. .+...+..++|+|++.       ++
T Consensus       185 ~~~~~~~~-~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-------l~  256 (662)
T 3azo_A          185 DAHRFVTG-PRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-------LI  256 (662)
T ss_dssp             SCSSEECC-CEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-------EE
T ss_pred             cCCCcccC-ceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-------EE
Confidence            33455666 89999999998776 4        379999998 56  1233343 3467788999999994       44


Q ss_pred             EeeecCC--cEEEEeCCCCceEEEEecCCC---------EEEEEEcCCCcEeC
Q 033738           71 WTASLDE--TIKYWDFSTPELLKTIDVKFP---------IFSMVRGKKGFAVF  112 (112)
Q Consensus        71 ~~~~~d~--~i~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~  112 (112)
                      +++..++  .|++||..+++.......+..         +..++|+|+++++|
T Consensus       257 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~  309 (662)
T 3azo_A          257 VATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV  309 (662)
T ss_dssp             EEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred             EEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence            5666777  677777766665443332221         45678888887653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.10  E-value=1.1e-09  Score=65.41  Aligned_cols=91  Identities=12%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             cCCCeEEcCCCCEEEEEc-C---C--eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec-------
Q 033738            9 VSSPPAFSNDVKRLLVCT-S---N--TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL-------   75 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~---~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-------   75 (112)
                      +.. ++|+|||+.|+..+ +   +  .|.+|++.+++... +..... +..++|+|++.       .++..+.       
T Consensus        61 ~~~-~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~-~~~~~wspdg~-------~l~~~~~~~~~~~~  130 (347)
T 2gop_A           61 ATM-PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKK-ILEAKN-IRSLEWNEDSR-------KLLIVGFKRREDED  130 (347)
T ss_dssp             CEE-EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE-EEEESE-EEEEEECTTSS-------EEEEEEECCCC---
T ss_pred             CCC-eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEE-EEcCCC-ccceeECCCCC-------EEEEEEccCCCcCC
Confidence            444 89999999998776 2   3  37888888775433 333334 88999999995       2223321       


Q ss_pred             --------------------CCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           76 --------------------DETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        76 --------------------d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                                          ...+++||+.+++.+..+... .+..+.|+|+| .+
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~  184 (347)
T 2gop_A          131 FIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IV  184 (347)
T ss_dssp             ------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EE
T ss_pred             cEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EE
Confidence                                256889999888763444333 77788999998 54

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.09  E-value=9.1e-09  Score=62.30  Aligned_cols=99  Identities=12%  Similarity=0.072  Sum_probs=67.3

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCC-CCcee--eecc--ccCCceEEEEEecCCCCccceeEEEEeee-cCC
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTS-TGLQI--SSLE--GHTAPVTTVIVVPASTPATKILSYCWTAS-LDE   77 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~d~   77 (112)
                      ...+.. ++|+|||+++++++  ++.|++|+++ +++..  ..+.  .+...+..++|+|+++       +++.++ .++
T Consensus       144 ~~~~~~-~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~-------~l~v~~~~~~  215 (365)
T 1jof_A          144 NTGIHG-MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN-------YLYALMEAGN  215 (365)
T ss_dssp             TCCEEE-EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS-------EEEEEETTTT
T ss_pred             CCcceE-EEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCC-------EEEEEECCCC
Confidence            345666 89999999887765  5899999998 66532  2232  2345678999999995       333444 578


Q ss_pred             cEEEEeCC--CCceE---EEEec---C----C-------CEEEEE-EcCCCcEeC
Q 033738           78 TIKYWDFS--TPELL---KTIDV---K----F-------PIFSMV-RGKKGFAVF  112 (112)
Q Consensus        78 ~i~~~~~~--~~~~~---~~~~~---~----~-------~v~~~~-~~~~~~~~~  112 (112)
                      .+.+|++.  +++..   ..+..   +    .       .+..++ |+|+|+++|
T Consensus       216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~  270 (365)
T 1jof_A          216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence            99999765  46542   12221   1    1       378899 999998774

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.07  E-value=1.7e-08  Score=60.16  Aligned_cols=99  Identities=14%  Similarity=0.013  Sum_probs=70.9

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC----CcE
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD----ETI   79 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d----~~i   79 (112)
                      +...+.+ ++|+++|++++++. ++.|.+||.++++...........+.++++++++.       ++++...+    +.|
T Consensus        43 ~~~~~~~-~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~-------l~v~~~~~~~~~~~i  114 (333)
T 2dg1_A           43 KGLQLEG-LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-------LFVCYLGDFKSTGGI  114 (333)
T ss_dssp             SCCCEEE-EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-------EEEEECTTSSSCCEE
T ss_pred             cCccccC-cEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc-------EEEEeCCCCCCCceE
Confidence            4445565 89999999777777 79999999987764433334556789999999985       44455555    689


Q ss_pred             EEEeCCCCceEEEEec---CCCEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDV---KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~  111 (112)
                      .+||..++.....+..   ...+..+.++|+|+.+
T Consensus       115 ~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~  149 (333)
T 2dg1_A          115 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFY  149 (333)
T ss_dssp             EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEE
T ss_pred             EEEeCCCCEEEEEEccCccCCcccceEECCCCCEE
Confidence            9999887765433321   2368899999998754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.02  E-value=1.3e-08  Score=61.61  Aligned_cols=96  Identities=15%  Similarity=0.162  Sum_probs=65.8

Q ss_pred             cCCCeEEcCCCCE--EEEE--------------cCCeEEEEeCC-CCceeeecc----ccCCceEEEEEecCCCCcccee
Q 033738            9 VSSPPAFSNDVKR--LLVC--------------TSNTVSIFSTS-TGLQISSLE----GHTAPVTTVIVVPASTPATKIL   67 (112)
Q Consensus         9 v~~~~~~~~~~~~--l~~~--------------~~~~v~~~~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~   67 (112)
                      ... ++++|||+.  ++++              .++.+.+|++. .++....+.    .+...+..++|+|+++      
T Consensus        85 ~~~-~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~------  157 (365)
T 1jof_A           85 PRA-NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET------  157 (365)
T ss_dssp             GGG-GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS------
T ss_pred             Ccc-EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC------
Confidence            445 889999984  4443              46889999987 354433332    2345688999999995      


Q ss_pred             EEEEeee-cCCcEEEEeCC-CCceE--EEEec---CCCEEEEEEcCCCcEeC
Q 033738           68 SYCWTAS-LDETIKYWDFS-TPELL--KTIDV---KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        68 ~~~~~~~-~d~~i~~~~~~-~~~~~--~~~~~---~~~v~~~~~~~~~~~~~  112 (112)
                       +++++. .++.|++|++. +++..  ..+..   ...+..++|+|+|+++|
T Consensus       158 -~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~  208 (365)
T 1jof_A          158 -YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLY  208 (365)
T ss_dssp             -EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             -EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEE
Confidence             333443 46799999998 67643  23331   33788999999998764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.96  E-value=3.4e-09  Score=64.17  Aligned_cols=80  Identities=15%  Similarity=0.118  Sum_probs=56.8

Q ss_pred             CcCCCeEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccCCce-EEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            8 YVSSPPAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHTAPV-TTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      .+.. ++|+|||+.|+...  +  ..+.+||+.+++. ..+....... ....|+|++.       .++....++.+++|
T Consensus        37 ~~~~-~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~spdg~-------~l~~~~~~~~l~~~  107 (396)
T 3c5m_A           37 YFYQ-KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA-VQLTEGKGDNTFGGFISTDER-------AFFYVKNELNLMKV  107 (396)
T ss_dssp             CTTS-CCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-EECCCSSCBCTTTCEECTTSS-------EEEEEETTTEEEEE
T ss_pred             eeec-CcCCCCCCEEEEEEecCCCceEEEEECCCCcE-EEeecCCCCccccceECCCCC-------EEEEEEcCCcEEEE
Confidence            3666 89999999988764  2  4789999987764 3343333332 2378999995       56677778899999


Q ss_pred             eCCCCceEEEEecC
Q 033738           83 DFSTPELLKTIDVK   96 (112)
Q Consensus        83 ~~~~~~~~~~~~~~   96 (112)
                      |+.+++.......+
T Consensus       108 d~~~~~~~~~~~~~  121 (396)
T 3c5m_A          108 DLETLEEQVIYTVD  121 (396)
T ss_dssp             ETTTCCEEEEEECC
T ss_pred             ECCCCCcEEEEecc
Confidence            99988766555533

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.95  E-value=3.4e-08  Score=58.06  Aligned_cols=96  Identities=7%  Similarity=-0.076  Sum_probs=69.9

Q ss_pred             CCCcCCCeEEcCCCC-EEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            6 RSYVSSPPAFSNDVK-RLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~-~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      .....+ ++|+|+|+ .++++. ++.|..|+..++  ...+..+...+..+++++++.       ++++...++.|.+||
T Consensus        27 ~~~~eg-~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-------l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           27 FTWTEG-PVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-------LIACSHGLRRLERQR   96 (296)
T ss_dssp             CSSEEE-EEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-------EEEEETTTTEEEEEC
T ss_pred             CccccC-CeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-------EEEEecCCCeEEEEc
Confidence            344555 89999998 555666 799999999876  555555667788999999985       555666678999999


Q ss_pred             CCCCceEEEEecC-----CCEEEEEEcCCCcEe
Q 033738           84 FSTPELLKTIDVK-----FPIFSMVRGKKGFAV  111 (112)
Q Consensus        84 ~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~  111 (112)
                      ..+++........     ..+..++++|+|+++
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~  129 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLW  129 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEE
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEE
Confidence            9888754433221     145678999998764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.92  E-value=8.9e-08  Score=56.52  Aligned_cols=95  Identities=18%  Similarity=0.120  Sum_probs=70.9

Q ss_pred             CCCeEEcCCCCEEEEEc--CCeEEEEeC--CCCce-----eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738           10 SSPPAFSNDVKRLLVCT--SNTVSIFST--STGLQ-----ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~--~~~v~~~~~--~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      .. ++|+||++.++.+.  ++.|..|++  .++..     ...+....+....+++.+++.       ++++....+.|.
T Consensus       152 ng-i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-------lwva~~~~~~v~  223 (297)
T 3g4e_A          152 NG-LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-------LWVACYNGGRVI  223 (297)
T ss_dssp             EE-EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-------EEEEEETTTEEE
T ss_pred             cc-eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-------EEEEEcCCCEEE
Confidence            44 88999998776554  689999987  34432     122223335567889999985       566767778899


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEc-CCCcEeC
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRG-KKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~~~~  112 (112)
                      .||..+|+.+..+..+. .+.+++|. |+++.||
T Consensus       224 ~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~  257 (297)
T 3g4e_A          224 RLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMY  257 (297)
T ss_dssp             EECTTTCCEEEEEECSSSBEEEEEEESGGGCEEE
T ss_pred             EEcCCCceEEEEEECCCCCceEEEEeCCCCCEEE
Confidence            99999899988888774 89999998 8887764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.90  E-value=1.4e-07  Score=55.04  Aligned_cols=95  Identities=12%  Similarity=0.208  Sum_probs=69.0

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecccc--CCceEEEEEecCCCCccceeEEEEeeecCC-cEEEE
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGH--TAPVTTVIVVPASTPATKILSYCWTASLDE-TIKYW   82 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~   82 (112)
                      ..+.. ++++++|+.+++.. ++.|++||.. ++.+..+...  ......+++++++.       ++++...++ .|++|
T Consensus       164 ~~p~~-i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~-------l~v~~~~~~~~i~~~  234 (286)
T 1q7f_A          164 EFPNG-VVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGE-------ILIADNHNNFNLTIF  234 (286)
T ss_dssp             SSEEE-EEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCC-------EEEEECSSSCEEEEE
T ss_pred             CCcEE-EEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCC-------EEEEeCCCCEEEEEE
Confidence            34565 89999998777766 7999999975 4445555433  24678999999985       556666665 99999


Q ss_pred             eCCCCceEEEEecCC---CEEEEEEcCCCcEe
Q 033738           83 DFSTPELLKTIDVKF---PIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~  111 (112)
                      |. +++.+..+..+.   .+..++++|+|+.+
T Consensus       235 ~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~  265 (286)
T 1q7f_A          235 TQ-DGQLISALESKVKHAQCFDVALMDDGSVV  265 (286)
T ss_dssp             CT-TSCEEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred             CC-CCCEEEEEcccCCCCcceeEEECCCCcEE
Confidence            95 466666665443   47789999999754

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.89  E-value=5.3e-08  Score=59.85  Aligned_cols=89  Identities=13%  Similarity=0.061  Sum_probs=67.1

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      +.. |.. ++|  |++.|+.+.++.|++||+.+......+..+...+..+.+.+.         -++.+..||.+.+||+
T Consensus        87 lp~-V~~-l~f--d~~~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p---------~~av~~~dG~L~v~dl  153 (388)
T 1xip_A           87 IPD-VIF-VCF--HGDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN---------TLVILNSVNDLSALDL  153 (388)
T ss_dssp             CTT-EEE-EEE--ETTEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS---------EEEEEETTSEEEEEET
T ss_pred             CCC-eeE-EEE--CCCEEEEEcCCcEEEEEchhhhccCccceeecceeeEEecCC---------CEEEEECCCCEEEEEc
Confidence            344 776 889  899999888899999999876555555566677777665432         1457789999999999


Q ss_pred             CCCceEEEEecCCCEEEEEEcCCCc
Q 033738           85 STPELLKTIDVKFPIFSMVRGKKGF  109 (112)
Q Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~  109 (112)
                      .++....   ....|.+++|+|+|.
T Consensus       154 ~~~~~~~---~~~~Vs~v~WSpkG~  175 (388)
T 1xip_A          154 RTKSTKQ---LAQNVTSFDVTNSQL  175 (388)
T ss_dssp             TTCCEEE---EEESEEEEEECSSEE
T ss_pred             cCCcccc---ccCCceEEEEcCCce
Confidence            9877643   223899999999983

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.88  E-value=7.3e-09  Score=62.72  Aligned_cols=92  Identities=11%  Similarity=-0.142  Sum_probs=62.1

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEE-------------------EEEecCCCCccceeEEEEe
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTT-------------------VIVVPASTPATKILSYCWT   72 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~~~~~~~~~   72 (112)
                      +.|+|||+.|+..+ ++.+++||+.+++.......+......                   ..++|++.   .++    .
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~---~~~----~  158 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS---WEK----F  158 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS---HHH----H
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc---cee----e
Confidence            78999999998887 789999999887644333323322222                   24456653   111    2


Q ss_pred             e-----ecCCcEEEEeCCCCceEEEEecCCCEEEEEEcC-CCcEe
Q 033738           73 A-----SLDETIKYWDFSTPELLKTIDVKFPIFSMVRGK-KGFAV  111 (112)
Q Consensus        73 ~-----~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  111 (112)
                      .     ..+..+++||+.+++..........+..+.|+| ++..+
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l  203 (396)
T 3c5m_A          159 AEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTV  203 (396)
T ss_dssp             HHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEE
T ss_pred             eeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEE
Confidence            1     456689999999887766665555888999999 77644

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.88  E-value=9.1e-08  Score=56.23  Aligned_cols=95  Identities=12%  Similarity=0.052  Sum_probs=66.9

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC-CCce---eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS-TGLQ---ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      ..... ++|+|+|+.+++.+ ++.|.+|++. .+..   ...+....+.+..+++++++.       ++++.  ++.|.+
T Consensus       172 ~~~~g-i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-------l~v~~--~~~v~~  241 (296)
T 3e5z_A          172 VKPNG-LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-------IWASA--GDGVHV  241 (296)
T ss_dssp             SSEEE-EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-------EEEEE--TTEEEE
T ss_pred             CCCcc-EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-------EEEEc--CCeEEE
Confidence            34455 89999999886666 7899999986 4443   223322344556889999985       44444  788999


Q ss_pred             EeCCCCceEEEEecCCCEEEEEE-cCCCcEeC
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVR-GKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~  112 (112)
                      ||.. ++.+..+..+..+.+++| .|+++.||
T Consensus       242 ~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~  272 (296)
T 3e5z_A          242 LTPD-GDELGRVLTPQTTSNLCFGGPEGRTLY  272 (296)
T ss_dssp             ECTT-SCEEEEEECSSCCCEEEEESTTSCEEE
T ss_pred             ECCC-CCEEEEEECCCCceeEEEECCCCCEEE
Confidence            9986 777777766555888889 57877653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.87  E-value=9e-08  Score=61.47  Aligned_cols=85  Identities=12%  Similarity=0.078  Sum_probs=67.5

Q ss_pred             CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC--CCceEEEEecC
Q 033738           20 KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS--TPELLKTIDVK   96 (112)
Q Consensus        20 ~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~~~~~~~~~   96 (112)
                      ..+++.. ++.|.++|..+++.+..+... ..+..+.++|+++       +++.++.++.+.+||+.  +++.+..+...
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr-------~lyv~~~dg~V~viD~~~~t~~~v~~i~~G  239 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR-------YLFVIGRDGKVNMIDLWMKEPTTVAEIKIG  239 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSC-------EEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCC-------EEEEEcCCCeEEEEECCCCCCcEeEEEecC
Confidence            4444555 799999999999877777643 3456899999996       55567889999999995  77888888777


Q ss_pred             CCEEEEEEc----CCCcEeC
Q 033738           97 FPIFSMVRG----KKGFAVF  112 (112)
Q Consensus        97 ~~v~~~~~~----~~~~~~~  112 (112)
                      .....++|+    |+|+++|
T Consensus       240 ~~P~~ia~s~~~~pDGk~l~  259 (567)
T 1qks_A          240 SEARSIETSKMEGWEDKYAI  259 (567)
T ss_dssp             SEEEEEEECCSTTCTTTEEE
T ss_pred             CCCceeEEccccCCCCCEEE
Confidence            777889999    6998875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.86  E-value=1e-07  Score=56.04  Aligned_cols=85  Identities=14%  Similarity=0.020  Sum_probs=67.1

Q ss_pred             CCCEEEEEc-CCeEEEEeCCCCceeeeccccC-CceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEec
Q 033738           18 DVKRLLVCT-SNTVSIFSTSTGLQISSLEGHT-APVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDV   95 (112)
Q Consensus        18 ~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~   95 (112)
                      .++.|++++ ++.|.+||.++++.+..+..+. ..+..+.++|++.       +++  +.++.++.||. +|+.+..+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-------ilv--s~~~~V~~~d~-~G~~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-------ILF--SYSKGAKMITR-DGRELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-------EEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-------EEE--eCCCCEEEECC-CCCEEEEEcC
Confidence            467788887 8999999998999888887655 3678889999995       444  34678999999 7888888876


Q ss_pred             C--CCEEEEEEcCCCcEeC
Q 033738           96 K--FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        96 ~--~~v~~~~~~~~~~~~~  112 (112)
                      +  ..+.++.+.++|+.++
T Consensus        74 ~~~~~~~~~~~~~dG~~lv   92 (276)
T 3no2_A           74 PAGCEMQTARILPDGNALV   92 (276)
T ss_dssp             CTTCEEEEEEECTTSCEEE
T ss_pred             CCCccccccEECCCCCEEE
Confidence            5  3677888888887763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.86  E-value=4.8e-08  Score=58.44  Aligned_cols=94  Identities=14%  Similarity=0.123  Sum_probs=67.9

Q ss_pred             CcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEe-------eecC
Q 033738            8 YVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWT-------ASLD   76 (112)
Q Consensus         8 ~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~d   76 (112)
                      .... ++++|+ ++.+++.. ++.|++|+.++++.+..+.  .+...+..++++| +.       .+.+       ...+
T Consensus       197 ~p~g-ia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~-------~~~~~g~~~v~~~~~  267 (329)
T 3fvz_A          197 VPHS-LALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF-------LFAVNGKPYFGDQEP  267 (329)
T ss_dssp             CEEE-EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE-------EEEEECCCCTTCSCC
T ss_pred             CCcE-EEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE-------EEEeCCCEEeccCCC
Confidence            3555 899998 55555655 7999999998787776663  3455678899998 31       2222       2334


Q ss_pred             CcEEEEeCCCCceEEEEe---cCC-CEEEEEEcCCCcE
Q 033738           77 ETIKYWDFSTPELLKTID---VKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~~~---~~~-~v~~~~~~~~~~~  110 (112)
                      ..+++|+..+++.+..+.   .+. ....++++|+|..
T Consensus       268 ~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~l  305 (329)
T 3fvz_A          268 VQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTV  305 (329)
T ss_dssp             CCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEE
T ss_pred             cEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCE
Confidence            589999999999888874   222 6899999999954

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.83  E-value=2e-08  Score=65.94  Aligned_cols=94  Identities=15%  Similarity=0.071  Sum_probs=61.6

Q ss_pred             CcCCCeEEcCCCCEEEEEc--C----CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC----
Q 033738            8 YVSSPPAFSNDVKRLLVCT--S----NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE----   77 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~----   77 (112)
                      .+.. ++|||||+.|+.+.  +    ..|++||+.+++.... ......+..++|+|+ +       .++.+..++    
T Consensus       164 ~~~~-~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~-------~l~~~~~~~~~~~  233 (741)
T 1yr2_A          164 ALDA-WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-D-------ALLYSRFAEPKEG  233 (741)
T ss_dssp             EEEE-EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-S-------EEEEEECCCC---
T ss_pred             EEEe-EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-C-------EEEEEEecCcccc
Confidence            3455 89999999998775  2    3699999998875432 111222346789999 6       333333332    


Q ss_pred             ----------cEEEEeCCCCce--EEEEecCC---CEEEEEEcCCCcEe
Q 033738           78 ----------TIKYWDFSTPEL--LKTIDVKF---PIFSMVRGKKGFAV  111 (112)
Q Consensus        78 ----------~i~~~~~~~~~~--~~~~~~~~---~v~~~~~~~~~~~~  111 (112)
                                .|++|++.++..  ...+....   .+..+.|+|||++|
T Consensus       234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l  282 (741)
T 1yr2_A          234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWV  282 (741)
T ss_dssp             -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEE
T ss_pred             cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEE
Confidence                      488999877652  22333222   48889999999876

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.79  E-value=5.2e-07  Score=52.66  Aligned_cols=95  Identities=14%  Similarity=0.132  Sum_probs=69.3

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      ..+.. ++++|+|+.+++.. ++.|.+||.. ++....+.  .+...+..+++++++.       ++++...++.|++||
T Consensus       121 ~~~~~-i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~-------l~v~~~~~~~i~~~~  191 (286)
T 1q7f_A          121 QHPRG-VTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-------IFISDNRAHCVKVFN  191 (286)
T ss_dssp             SCEEE-EEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-------EEEEEGGGTEEEEEE
T ss_pred             CCceE-EEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC-------EEEEECCCCEEEEEc
Confidence            34555 88999998777776 7899999965 44444443  2334578999999984       566777789999999


Q ss_pred             CCCCceEEEEecC---CCEEEEEEcCCCcEe
Q 033738           84 FSTPELLKTIDVK---FPIFSMVRGKKGFAV  111 (112)
Q Consensus        84 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~~  111 (112)
                      .. ++.+..+...   .....++++++|+++
T Consensus       192 ~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~  221 (286)
T 1q7f_A          192 YE-GQYLRQIGGEGITNYPIGVGINSNGEIL  221 (286)
T ss_dssp             TT-CCEEEEESCTTTSCSEEEEEECTTCCEE
T ss_pred             CC-CCEEEEEccCCccCCCcEEEECCCCCEE
Confidence            74 5666666543   368889999998754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.79  E-value=3.9e-07  Score=54.53  Aligned_cols=98  Identities=12%  Similarity=0.058  Sum_probs=70.7

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-C------------------------CeEEEEeCCCCceeeecc-ccCCceEEEEEecC
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-S------------------------NTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPA   59 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~------------------------~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~   59 (112)
                      .+.+.+ ++++|+|+.+++.. +                        +.|.+||..+++....+. .+......++++++
T Consensus        23 l~~v~~-va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSG-VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEE-EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             cCCceE-EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            345666 99999999998877 5                        369999998887665443 23346789999999


Q ss_pred             CCCccceeEEEEeeecCCcEEEEeCCCCc-eEEEEe---------cCC-CEEEEEEcC-CCcEe
Q 033738           60 STPATKILSYCWTASLDETIKYWDFSTPE-LLKTID---------VKF-PIFSMVRGK-KGFAV  111 (112)
Q Consensus        60 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~---------~~~-~v~~~~~~~-~~~~~  111 (112)
                      +.       ++++...++.|++||..... .+..+.         .+. ....++++| +|..+
T Consensus       102 g~-------l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ly  158 (329)
T 3fvz_A          102 GN-------YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVF  158 (329)
T ss_dssp             SC-------EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEE
T ss_pred             CC-------EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEE
Confidence            95       66788888999999976432 445542         112 578899999 66643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.79  E-value=3.5e-08  Score=59.91  Aligned_cols=87  Identities=14%  Similarity=0.164  Sum_probs=63.7

Q ss_pred             CCCCEEEEEc-------CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee----------cCCcE
Q 033738           17 NDVKRLLVCT-------SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS----------LDETI   79 (112)
Q Consensus        17 ~~~~~l~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------~d~~i   79 (112)
                      +++++++...       |+.+.+||..+++.+..+.....+  .++++|+++       +++.++          .++.|
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~-------~lyv~~~~~~~~~~g~~~~~v   83 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGK-------KIYTMTTYHERITRGKRSDVV   83 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSS-------EEEEEEEEETTSSSSCEEEEE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCC-------EEEEEEecccccccCCCCCEE
Confidence            3566666542       469999999988877777655444  899999995       333333          35679


Q ss_pred             EEEeCCCCceEEEEecC-------CCEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVK-------FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~  112 (112)
                      .+||..+++.+..+...       .....++++|+|+++|
T Consensus        84 ~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~  123 (361)
T 2oiz_A           84 EVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV  123 (361)
T ss_dssp             EEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred             EEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence            99999988888877643       2456789999999875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.76  E-value=8.2e-07  Score=52.85  Aligned_cols=98  Identities=5%  Similarity=-0.023  Sum_probs=64.5

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-C----CeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeec---
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-S----NTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASL---   75 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~----~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---   75 (112)
                      ...+.. ++++|+|+++++.. +    +.|.+||.+++.....+.  .....+..++++|++.       ++++...   
T Consensus        86 ~~~~~~-i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-------l~v~~~~~~~  157 (333)
T 2dg1_A           86 KANPAA-IKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-------FYFTDFRGYS  157 (333)
T ss_dssp             SSSEEE-EEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-------EEEEECCCBT
T ss_pred             CCCcce-EEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-------EEEEeccccc
Confidence            445666 89999999887776 4    589999988765332222  2345678999999985       4444432   


Q ss_pred             ---CCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           76 ---DETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        76 ---d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                         .+.+..+|...++.............++|+|+|+.+
T Consensus       158 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l  196 (333)
T 2dg1_A          158 TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVL  196 (333)
T ss_dssp             TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEE
T ss_pred             cCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEE
Confidence               345666676655544333333367889999998755

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.74  E-value=1.8e-07  Score=55.91  Aligned_cols=87  Identities=16%  Similarity=0.088  Sum_probs=60.4

Q ss_pred             cCCCeEEcCCCCEEEEEc----------CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC--
Q 033738            9 VSSPPAFSNDVKRLLVCT----------SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD--   76 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d--   76 (112)
                      +.. +.+  ||+.++...          +..|.+||+.+++. ..+    ..+...+|+|++.       .++....+  
T Consensus        17 ~~~-~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l----~~~~~~~~SpDg~-------~la~~~~~~~   81 (347)
T 2gop_A           17 LSD-PRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI----ENATMPRISPDGK-------KIAFMRANEE   81 (347)
T ss_dssp             EEE-EEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE----ESCEEEEECTTSS-------EEEEEEEETT
T ss_pred             ccc-ceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc----ccCCCeEECCCCC-------EEEEEEeccC
Confidence            344 666  888887542          35789999987753 333    4567899999995       33333322  


Q ss_pred             -C--cEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           77 -E--TIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        77 -~--~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                       +  .|++|++.+++.......+. +..+.|+|+|+.|
T Consensus        82 ~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l  118 (347)
T 2gop_A           82 KKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKL  118 (347)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEE
T ss_pred             CCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEE
Confidence             3  48888988887766655555 8999999999866

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.72  E-value=3.4e-07  Score=59.91  Aligned_cols=97  Identities=11%  Similarity=0.056  Sum_probs=60.4

Q ss_pred             cCCCeEEcCCCCEEEEEc-CCe----------------EEEEeCCCCcee--eecc--ccCCceEEEEEecCCCCcccee
Q 033738            9 VSSPPAFSNDVKRLLVCT-SNT----------------VSIFSTSTGLQI--SSLE--GHTAPVTTVIVVPASTPATKIL   67 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~~~----------------v~~~~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~~~~   67 (112)
                      +.. ++|+|||+.|+.++ ++.                |++|++.++...  ..+.  .+...+..+.|+|+++   .++
T Consensus       173 ~~~-~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~---~l~  248 (710)
T 2xdw_A          173 FSC-MAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR---YVL  248 (710)
T ss_dssp             SCC-EEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC---EEE
T ss_pred             cce-EEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC---EEE
Confidence            455 99999999998876 544                999999876521  2222  2344567899999995   222


Q ss_pred             EEEEeeec--CCcEEEEeCCC------Cc-eEEEEecCC-CEEEEEEcCCCcEe
Q 033738           68 SYCWTASL--DETIKYWDFST------PE-LLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        68 ~~~~~~~~--d~~i~~~~~~~------~~-~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                       +....+.  +..+++||+.+      +. ....+..+. .+.. .|+|+|+.+
T Consensus       249 -~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l  300 (710)
T 2xdw_A          249 -LSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVF  300 (710)
T ss_dssp             -EEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEE
T ss_pred             -EEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEE
Confidence             1111111  57899999876      43 344444433 3333 477777755

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.71  E-value=4.3e-07  Score=59.35  Aligned_cols=91  Identities=9%  Similarity=0.068  Sum_probs=57.2

Q ss_pred             CCCeEEcCCCCEEEEEc-CCe-------------EEEEeCCCCce----eeeccccCCceEEEEEecCCCCccceeEEEE
Q 033738           10 SSPPAFSNDVKRLLVCT-SNT-------------VSIFSTSTGLQ----ISSLEGHTAPVTTVIVVPASTPATKILSYCW   71 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~-~~~-------------v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   71 (112)
                      .. ++|+|||+.|+.++ +..             |++|++.++..    +.....+...+..+.|+|+++       +++
T Consensus       171 ~~-~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~-------~l~  242 (695)
T 2bkl_A          171 AT-PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK-------YLF  242 (695)
T ss_dssp             CC-CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC-------CEE
T ss_pred             cc-eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC-------EEE
Confidence            44 89999999998887 554             99999987652    222233445678999999995       333


Q ss_pred             eeecCC----cEEEEeCCCCceEEEEecCCCEEEEEEcCCCc
Q 033738           72 TASLDE----TIKYWDFSTPELLKTIDVKFPIFSMVRGKKGF  109 (112)
Q Consensus        72 ~~~~d~----~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  109 (112)
                      ..+.++    .+++++..++................+ ++|.
T Consensus       243 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~  283 (695)
T 2bkl_A          243 VYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR  283 (695)
T ss_dssp             EEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE
T ss_pred             EEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc
Confidence            433333    677777665554333333334444445 4554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.70  E-value=7.5e-07  Score=52.47  Aligned_cols=92  Identities=8%  Similarity=-0.037  Sum_probs=66.1

Q ss_pred             eEEc----CCCCEEEEE-c-CCeEEEEeCC-CCc-----eeeeccccC-CceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738           13 PAFS----NDVKRLLVC-T-SNTVSIFSTS-TGL-----QISSLEGHT-APVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus        13 ~~~~----~~~~~l~~~-~-~~~v~~~~~~-~~~-----~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      ++++    |+++.++.+ . ++.|.+|+.+ .+.     ....+..+. .....+++++++.       ++++...++.|
T Consensus       177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-------l~v~~~~~~~i  249 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-------LLVANWGSSHI  249 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-------EEEEEETTTEE
T ss_pred             EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-------EEEEEcCCCEE
Confidence            7888    998766555 4 6899999976 342     122233332 4567899999985       55666678899


Q ss_pred             EEEeCCCCceEEEEecC-CCEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVK-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~  111 (112)
                      ..||..+++.+..+..+ ..+.+++++|+|+.+
T Consensus       250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l  282 (314)
T 1pjx_A          250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTI  282 (314)
T ss_dssp             EEECTTCBSCSEEEECSSSCEEEEEECTTSSEE
T ss_pred             EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEE
Confidence            99999877776666665 478999999999854

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.70  E-value=2.6e-06  Score=50.98  Aligned_cols=94  Identities=11%  Similarity=0.000  Sum_probs=65.9

Q ss_pred             CCCeEEcCCCCEEEEEc--CCeEEEEeCC--CC-ce-----eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738           10 SSPPAFSNDVKRLLVCT--SNTVSIFSTS--TG-LQ-----ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~--~~~v~~~~~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      .. ++|+||++.++.+.  ++.|.+|+.+  ++ ..     ...+.........+++.+++.       ++++...++.|
T Consensus       182 ~~-i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-------lwva~~~~~~v  253 (326)
T 2ghs_A          182 NS-ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-------IWNARWGEGAV  253 (326)
T ss_dssp             EE-EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-------EEEEEETTTEE
T ss_pred             CC-eEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-------EEEEEeCCCEE
Confidence            44 88999998776554  6899999985  45 21     122222334557888888884       45555566789


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEc-CCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRG-KKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~~~~  112 (112)
                      ..||. +++.+..+..+. .+.+++|. ++++.+|
T Consensus       254 ~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~  287 (326)
T 2ghs_A          254 DRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLL  287 (326)
T ss_dssp             EEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             EEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEE
Confidence            99998 577777777665 78999998 8877653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.66  E-value=3.1e-06  Score=48.84  Aligned_cols=96  Identities=10%  Similarity=-0.095  Sum_probs=66.7

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      .... ++++++|+.+++.. ++.|.+|+...................+++++++.       ++++...++.|.+|+...
T Consensus       151 ~p~~-i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~-------l~v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          151 DPDG-VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-------VYVTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             SCCC-EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-------EEEEETTTSCEEEECTTC
T ss_pred             Ccee-EEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCC-------EEEEECCCCcEEEEcCCC
Confidence            4566 89999998766666 68999999876543332222335678999999884       556666788999999875


Q ss_pred             CceEEEEecC-CCEEEEEEcCCCcEe
Q 033738           87 PELLKTIDVK-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        87 ~~~~~~~~~~-~~v~~~~~~~~~~~~  111 (112)
                      .........+ ..+.+++++++|+.+
T Consensus       223 ~~~~~~~~~~~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          223 TTSTVLPFTGLNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             SCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred             CcceeeccCCCCCceeEEECCCCCEE
Confidence            4433222122 368899999998743

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.66  E-value=3.5e-07  Score=56.29  Aligned_cols=91  Identities=13%  Similarity=0.050  Sum_probs=64.2

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      |...+.. +.+.+.  .++.++ ||.+.+||+..+....    ....|.+++|+|++        + +.+..|+.+++|+
T Consensus       125 ~~~~v~~-i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--------~-~vg~~dg~i~~~~  188 (388)
T 1xip_A          125 FEKPVFQ-LKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--------L-AVLLKDRSFQSFA  188 (388)
T ss_dssp             CSSCEEE-EEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--------E-EEEETTSCEEEEE
T ss_pred             eecceee-EEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--------e-EEEEcCCcEEEEc
Confidence            3344544 555543  266565 9999999998776432    33579999999998        2 3678899999998


Q ss_pred             CCCCce--EEEE------e----cCCCEEEEEEcCCCcEe
Q 033738           84 FSTPEL--LKTI------D----VKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        84 ~~~~~~--~~~~------~----~~~~v~~~~~~~~~~~~  111 (112)
                      ...++.  ..++      .    ....|.++.|.+++.++
T Consensus       189 ~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~fl  228 (388)
T 1xip_A          189 WRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFL  228 (388)
T ss_dssp             EETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred             CCCccccccceecCCcccccccCCCeeEEEEEEecCCeEE
Confidence            877665  4555      2    12379999999988765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.63  E-value=3.7e-06  Score=54.13  Aligned_cols=92  Identities=10%  Similarity=-0.030  Sum_probs=67.5

Q ss_pred             CCCeEEcCCCCEEEEEc-CCeEEEEeCC--CCceeeeccccCCceEEEEEe----cCCCCccceeEEEEeeecCCcEEEE
Q 033738           10 SSPPAFSNDVKRLLVCT-SNTVSIFSTS--TGLQISSLEGHTAPVTTVIVV----PASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~-~~~v~~~~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      .. +.++|||+++++++ ++.|.+||+.  +.+.+..+.... ....++++    |+++      -.+++...++.+.++
T Consensus       200 ~~-v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk------~l~v~n~~~~~v~Vi  271 (567)
T 1qks_A          200 HI-SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDK------YAIAGAYWPPQYVIM  271 (567)
T ss_dssp             EE-EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTT------EEEEEEEETTEEEEE
T ss_pred             cc-eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCC------EEEEEEccCCeEEEE
Confidence            45 88999999998888 8999999995  677666666433 35789999    6885      233455667999999


Q ss_pred             eCCCCceEEEEecC-----------C-CEEEEEEcCCCc
Q 033738           83 DFSTPELLKTIDVK-----------F-PIFSMVRGKKGF  109 (112)
Q Consensus        83 ~~~~~~~~~~~~~~-----------~-~v~~~~~~~~~~  109 (112)
                      |..+.+.+..+...           . .+..+..++++.
T Consensus       272 D~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~  310 (567)
T 1qks_A          272 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  310 (567)
T ss_dssp             ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             ECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC
Confidence            99998888776532           1 455666666543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.62  E-value=3.4e-07  Score=56.29  Aligned_cols=93  Identities=15%  Similarity=0.137  Sum_probs=68.7

Q ss_pred             eEEcCCCCEEEEEc------CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEee--------ecCCc
Q 033738           13 PAFSNDVKRLLVCT------SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA--------SLDET   78 (112)
Q Consensus        13 ~~~~~~~~~l~~~~------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~d~~   78 (112)
                      ....|+++.++...      ++.|.++|..+++.+..+.....+ . ++++|+++   .+  |++..        ..++.
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~---~l--yVan~~~~r~~~G~~~~~  110 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGS---FI--AHASTVFSRIARGERTDY  110 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSS---CE--EEEEEEEEETTEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCC---EE--EEEcccccccccCCCCCE
Confidence            34578998888764      368999999999888888765555 4 99999995   22  22221        23578


Q ss_pred             EEEEeCCCCceEEEEecCC--------CEEEEEEcCCCcEeC
Q 033738           79 IKYWDFSTPELLKTIDVKF--------PIFSMVRGKKGFAVF  112 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~  112 (112)
                      +.+||..+.+.+..+..+.        ....+.++|||+++|
T Consensus       111 VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~ly  152 (386)
T 3sjl_D          111 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL  152 (386)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEE
T ss_pred             EEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEE
Confidence            9999999999888876431        456789999999775

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.61  E-value=2.1e-07  Score=60.91  Aligned_cols=97  Identities=8%  Similarity=0.121  Sum_probs=61.5

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc--C----CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC--
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT--S----NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD--   76 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~--~----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d--   76 (112)
                      |...+.. ++|||||++++.+.  .    ..|+++|+.+++.... .........++|+ |++       .++....+  
T Consensus       127 ~~~~l~~-~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~-------~l~y~~~~~~  196 (693)
T 3iuj_A          127 GTTALDQ-LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNE-------GFFYSSYDKP  196 (693)
T ss_dssp             SCCEEEE-EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTT-------EEEEEESSCC
T ss_pred             CcEEEEE-EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCC-------EEEEEEecCc
Confidence            4444555 89999999988543  1    5799999999875432 1111112467899 885       22233333  


Q ss_pred             -----------CcEEEEeCCCCce--EEEEec---C-CCEEEEEEcCCCcEe
Q 033738           77 -----------ETIKYWDFSTPEL--LKTIDV---K-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        77 -----------~~i~~~~~~~~~~--~~~~~~---~-~~v~~~~~~~~~~~~  111 (112)
                                 ..|++|++.++..  ...+..   + .....+.|+|||++|
T Consensus       197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l  248 (693)
T 3iuj_A          197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL  248 (693)
T ss_dssp             C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE
T ss_pred             ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE
Confidence                       4599999877543  233322   2 257789999999876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.56  E-value=2.8e-06  Score=50.86  Aligned_cols=95  Identities=11%  Similarity=-0.042  Sum_probs=66.2

Q ss_pred             CcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC---------
Q 033738            8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD---------   76 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d---------   76 (112)
                      .... +++ .+++.+++..  ++.|.++|+++++....+.... ....++++|+++       +++++..+         
T Consensus       132 ~p~~-i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~-------l~v~~~~~~~~~~~~~~  201 (328)
T 3dsm_A          132 STEQ-MVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNK-------MWTITDGGYEGSPYGYE  201 (328)
T ss_dssp             BCCC-EEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSE-------EEEEBCCBCTTCSSCBC
T ss_pred             Ccce-EEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCC-------EEEEECCCccCCccccC
Confidence            3444 666 3444444442  6899999999887766665432 346788899884       44444433         


Q ss_pred             -CcEEEEeCCCCceEEEEecC--CCEEEEEEcCCCcEeC
Q 033738           77 -ETIKYWDFSTPELLKTIDVK--FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        77 -~~i~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~  112 (112)
                       +.+.++|..+++....+..+  .....++++|+++.+|
T Consensus       202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ly  240 (328)
T 3dsm_A          202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLY  240 (328)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEE
T ss_pred             CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEE
Confidence             78999999988887777653  3688999999998775

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.54  E-value=8.7e-06  Score=47.79  Aligned_cols=90  Identities=6%  Similarity=0.014  Sum_probs=68.2

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK   91 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~   91 (112)
                      ++..++|+.+++.. ++.|..||.+ ++.+..+... .....+...+++.       +++++..++.+..+|..+|+.+.
T Consensus       130 v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~-------~~v~~~~~~~v~~~d~~tG~~~w  200 (276)
T 3no2_A          130 INKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGD-------CLVACGDAHCFVQLNLESNRIVR  200 (276)
T ss_dssp             CEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSC-------EEEECBTTSEEEEECTTTCCEEE
T ss_pred             ceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCC-------EEEEeCCCCeEEEEeCcCCcEEE
Confidence            67889999999887 8999999988 8877777654 3345667778885       66677778899999999999888


Q ss_pred             EEecCC-------CEEEEEEcCCCcEe
Q 033738           92 TIDVKF-------PIFSMVRGKKGFAV  111 (112)
Q Consensus        92 ~~~~~~-------~v~~~~~~~~~~~~  111 (112)
                      .+....       .+..+...++|+.+
T Consensus       201 ~~~~~~~~~~~l~~~~~~~~~~~G~i~  227 (276)
T 3no2_A          201 RVNANDIEGVQLFFVAQLFPLQNGGLY  227 (276)
T ss_dssp             EEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred             EecCCCCCCccccccccceEcCCCCEE
Confidence            875321       25666667777654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.53  E-value=4.8e-06  Score=50.96  Aligned_cols=88  Identities=11%  Similarity=0.117  Sum_probs=63.4

Q ss_pred             cCCCCEEEEEc--C-C---eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee----------cCCcE
Q 033738           16 SNDVKRLLVCT--S-N---TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS----------LDETI   79 (112)
Q Consensus        16 ~~~~~~l~~~~--~-~---~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------~d~~i   79 (112)
                      .|+++.++...  . .   .|.++|..+++.+..+.....+  .++++|+++       .++.+.          .++.+
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~-------~lyv~n~~~~~~~rg~~~~~v   99 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGS-------EFALASTSFSRIAKGKRTDYV   99 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCC-------EEEEEeccccccccCCCCCeE
Confidence            47787766554  2 2   8899999998877777654443  899999995       222332          36789


Q ss_pred             EEEeCCCCceEEEEecC--------CCEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVK--------FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~  112 (112)
                      .++|..+.+.+..+...        .....+.++|+|+++|
T Consensus       100 ~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~  140 (373)
T 2mad_H          100 EVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLL  140 (373)
T ss_pred             EEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEE
Confidence            99999988887776543        2345789999999875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.50  E-value=7.8e-07  Score=55.38  Aligned_cols=88  Identities=11%  Similarity=0.123  Sum_probs=65.5

Q ss_pred             CCCCEEEEEc--C----CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEee---------ecCCcEEE
Q 033738           17 NDVKRLLVCT--S----NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA---------SLDETIKY   81 (112)
Q Consensus        17 ~~~~~l~~~~--~----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---------~~d~~i~~   81 (112)
                      ++++.++...  +    +.|.++|..+.+.+..+.....+  .++++|+++   ++   +++.         ..++.|.+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk---~l---yVan~~~~~~~~G~~~~~Vsv  153 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGS---FF---AQASTVFERIARGKRTDYVEV  153 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSS---CE---EEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCC---EE---EEEeccccccccCCCCCEEEE
Confidence            5677666554  3    69999999999888888765555  899999995   22   2232         14678999


Q ss_pred             EeCCCCceEEEEecC--------CCEEEEEEcCCCcEeC
Q 033738           82 WDFSTPELLKTIDVK--------FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~  112 (112)
                      +|..+++.+..+...        .....+.++|||+++|
T Consensus       154 iD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~ly  192 (426)
T 3c75_H          154 FDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLL  192 (426)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEE
T ss_pred             EECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEE
Confidence            999999988887653        2345688999998875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.47  E-value=1e-05  Score=46.66  Aligned_cols=95  Identities=6%  Similarity=-0.126  Sum_probs=63.0

Q ss_pred             CCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            7 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      ..+.. ++++++|+.+++..++.|..||..... ...+. ........+++.+++.       ++++...++.|..|+..
T Consensus        67 ~~p~~-i~~~~~g~l~v~~~~~~i~~~d~~~~~-~~~~~~~~~~~p~~i~~~~~g~-------l~v~~~~~~~i~~~~~~  137 (270)
T 1rwi_B           67 YQPQG-LAVDGAGTVYVTDFNNRVVTLAAGSNN-QTVLPFDGLNYPEGLAVDTQGA-------VYVADRGNNRVVKLAAG  137 (270)
T ss_dssp             CSCCC-EEECTTCCEEEEETTTEEEEECTTCSC-CEECCCCSCSSEEEEEECTTCC-------EEEEEGGGTEEEEECTT
T ss_pred             CCcce-eEECCCCCEEEEcCCCEEEEEeCCCce-EeeeecCCcCCCcceEECCCCC-------EEEEECCCCEEEEEECC
Confidence            35566 899999986655557899999987553 33332 2234578999999884       55566677889999765


Q ss_pred             CCceEEEEecC-CCEEEEEEcCCCcE
Q 033738           86 TPELLKTIDVK-FPIFSMVRGKKGFA  110 (112)
Q Consensus        86 ~~~~~~~~~~~-~~v~~~~~~~~~~~  110 (112)
                      +.......... .....++++++|+.
T Consensus       138 ~~~~~~~~~~~~~~p~~i~~~~~g~l  163 (270)
T 1rwi_B          138 SKTQTVLPFTGLNDPDGVAVDNSGNV  163 (270)
T ss_dssp             CCSCEECCCCSCCSCCCEEECTTCCE
T ss_pred             CceeEeeccccCCCceeEEEeCCCCE
Confidence            54332222222 25677888888874

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.47  E-value=1.2e-05  Score=49.13  Aligned_cols=76  Identities=11%  Similarity=0.041  Sum_probs=54.7

Q ss_pred             CCeEEcCCCCEEEEEc-----------CCeEEEEeCCCCceeeecccc-------CCceEEEEEecCCCCccceeEEEEe
Q 033738           11 SPPAFSNDVKRLLVCT-----------SNTVSIFSTSTGLQISSLEGH-------TAPVTTVIVVPASTPATKILSYCWT   72 (112)
Q Consensus        11 ~~~~~~~~~~~l~~~~-----------~~~v~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~   72 (112)
                      . +.++|||+.++.+.           ++.|.++|..+.+.+..+...       ......++++|+++       +++.
T Consensus        70 ~-i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-------~l~v  141 (373)
T 2mad_H           70 N-PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-------DLLF  141 (373)
T ss_pred             C-eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC-------EEEE
Confidence            5 89999999988774           467999999887766555322       12235789999995       4334


Q ss_pred             ee--cCCcEEEEeCCCCceEEE-Eec
Q 033738           73 AS--LDETIKYWDFSTPELLKT-IDV   95 (112)
Q Consensus        73 ~~--~d~~i~~~~~~~~~~~~~-~~~   95 (112)
                      ++  .+..|.++| .+++.+.. +..
T Consensus       142 ~n~~~~~~v~viD-~t~~~~~~~i~~  166 (373)
T 2mad_H          142 FQFAAGPAVGLVV-QGGSSDDQLLSS  166 (373)
T ss_pred             EecCCCCeEEEEE-CCCCEEeEEcCC
Confidence            44  257899999 99888777 543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.46  E-value=9.4e-06  Score=48.88  Aligned_cols=101  Identities=7%  Similarity=-0.070  Sum_probs=67.9

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc------CCeEEEEeCCCCceeeeccc------cCCceEEEEEecCCCCccceeEEEEe
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT------SNTVSIFSTSTGLQISSLEG------HTAPVTTVIVVPASTPATKILSYCWT   72 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~------~~~v~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~   72 (112)
                      |...+.. ++++++|+++++-.      +..|.+||+.+++.+..+..      +......+++++++.      .++++
T Consensus        65 ~~~~p~g-v~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g------~~yvt  137 (343)
T 2qe8_A           65 TFDTVLG-IKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHN------FVYIS  137 (343)
T ss_dssp             CCSCEEE-EEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTT------EEEEE
T ss_pred             ceeEeeE-EEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCC------EEEEE
Confidence            3456666 89999987666543      37899999988875554432      123457889997643      23445


Q ss_pred             ee---cCCcEEEEeCCCCceEEEEecC------------------------------CCEEEEEEcCCCcEeC
Q 033738           73 AS---LDETIKYWDFSTPELLKTIDVK------------------------------FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        73 ~~---~d~~i~~~~~~~~~~~~~~~~~------------------------------~~v~~~~~~~~~~~~~  112 (112)
                      ..   .++.|.+||..+++....+..+                              ..+..++|+|+|+.+|
T Consensus       138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly  210 (343)
T 2qe8_A          138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLY  210 (343)
T ss_dssp             ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEE
T ss_pred             cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEE
Confidence            55   6789999999877665544221                              1357899999998664

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.45  E-value=2.2e-06  Score=52.48  Aligned_cols=77  Identities=6%  Similarity=0.032  Sum_probs=59.0

Q ss_pred             eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEee--------ecCCcEEEEeCCCCceEEEEecC----
Q 033738           29 TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA--------SLDETIKYWDFSTPELLKTIDVK----   96 (112)
Q Consensus        29 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~d~~i~~~~~~~~~~~~~~~~~----   96 (112)
                      .+.++|..+++.+..+.....+  .+.++|+++   ++  |+...        ..++.|.+||..+++.+.++..+    
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~---~l--yVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~  119 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGS---DF--ALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR  119 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSS---CE--EEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCC---EE--EEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence            8889999999988888766666  799999995   11  22221        24678999999999999888754    


Q ss_pred             ----CCEEEEEEcCCCcEeC
Q 033738           97 ----FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        97 ----~~v~~~~~~~~~~~~~  112 (112)
                          .....++++|||+++|
T Consensus       120 ~~~g~~P~~ia~SpDGk~ly  139 (368)
T 1mda_H          120 FSVGPRVHIIGNCASSACLL  139 (368)
T ss_dssp             CCBSCCTTSEEECTTSSCEE
T ss_pred             cccCCCcceEEEcCCCCEEE
Confidence                2356789999998775

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.43  E-value=1.1e-05  Score=47.33  Aligned_cols=92  Identities=11%  Similarity=-0.023  Sum_probs=68.7

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccC--C---ceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHT--A---PVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~--~---~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      ..+++||+.++.+. ++.+.++|.++.+....+....  .   ..+.+++. ++.       ++++...++.|.+.|..+
T Consensus       110 ~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-------lyvn~~~~~~V~vID~~t  181 (266)
T 2iwa_A          110 WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-------VWANIWQTDCIARISAKD  181 (266)
T ss_dssp             CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-------EEEEETTSSEEEEEETTT
T ss_pred             EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-------EEEecCCCCeEEEEECCC
Confidence            56788888777776 7899999999887776665322  1   34577777 553       445666678999999999


Q ss_pred             CceEEEEecC--------------CCEEEEEEcCCCcEeC
Q 033738           87 PELLKTIDVK--------------FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        87 ~~~~~~~~~~--------------~~v~~~~~~~~~~~~~  112 (112)
                      ++.+..+...              .....++|+|+++.+|
T Consensus       182 g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lf  221 (266)
T 2iwa_A          182 GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIF  221 (266)
T ss_dssp             CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEE
T ss_pred             CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEE
Confidence            9998888653              2458899999998765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.42  E-value=5.1e-06  Score=50.85  Aligned_cols=87  Identities=11%  Similarity=0.132  Sum_probs=66.6

Q ss_pred             eEEcCCCCEEEEE-c-C--------CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee-cCCcEEE
Q 033738           13 PAFSNDVKRLLVC-T-S--------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS-LDETIKY   81 (112)
Q Consensus        13 ~~~~~~~~~l~~~-~-~--------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~   81 (112)
                      +.++||++.++.+ . +        +.+.++|+.+.+.+..+.... ....++++|+++      -.+++.. .++.+.+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~------~l~va~~~~~~~VsV  341 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGA------SDNYANSAGTEVLDI  341 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSS------CEEEEEETTTTEEEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCC------EEEEEccCCCCeEEE
Confidence            6789999887754 2 2        356799999998888776543 468999999984      1344666 5899999


Q ss_pred             EeCCCCceEEEEecCCCEEEEEEcC
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVRGK  106 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~  106 (112)
                      +|..+++.+..+..+.....+++.+
T Consensus       342 ID~~t~kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          342 YDAASDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             EESSSCEEEEECCCCSCCCEEECCC
T ss_pred             EECCCCcEEEEEECCCCCCEEEeec
Confidence            9999999999998777666676654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.37  E-value=6.7e-06  Score=49.25  Aligned_cols=94  Identities=13%  Similarity=0.030  Sum_probs=64.6

Q ss_pred             cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccC-----CceEEEEEecCCCCccceeEEEEeee-cCCcEEE
Q 033738            9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHT-----APVTTVIVVPASTPATKILSYCWTAS-LDETIKY   81 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~   81 (112)
                      ... ++++++++.+++.. ++.|.+||..+++....+....     .....+++ .++.       ++++.. .++.|.+
T Consensus        86 p~~-i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~-------lyv~~~~~~~~v~v  156 (328)
T 3dsm_A           86 PRY-IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKY-------VYVNCWSYQNRILK  156 (328)
T ss_dssp             EEE-EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTE-------EEEEECTTCCEEEE
T ss_pred             CcE-EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCE-------EEEEcCCCCCEEEE
Confidence            344 78888885555553 7999999999887665554332     13446666 3442       333443 4889999


Q ss_pred             EeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +|..+++.+..+........+.++|+|+.+
T Consensus       157 iD~~t~~~~~~i~~g~~p~~i~~~~dG~l~  186 (328)
T 3dsm_A          157 IDTETDKVVDELTIGIQPTSLVMDKYNKMW  186 (328)
T ss_dssp             EETTTTEEEEEEECSSCBCCCEECTTSEEE
T ss_pred             EECCCCeEEEEEEcCCCccceEEcCCCCEE
Confidence            999999888888766566778888888754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.37  E-value=5.8e-05  Score=43.90  Aligned_cols=96  Identities=14%  Similarity=0.096  Sum_probs=66.0

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee-eccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS-SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      +...+.+ ++++++|+..++.. ++.|..||.. ++... ........+..+++.+++.       ++++...++.+..|
T Consensus        13 ~~~~~~~-i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-------l~v~~~~~~~i~~~   83 (299)
T 2z2n_A           13 QDTGPYG-ITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-------VWFTENAANKIGRI   83 (299)
T ss_dssp             SSCCEEE-EEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-------EEEEETTTTEEEEE
T ss_pred             cCCCccc-eEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-------EEEeCCCCCeEEEE
Confidence            4456666 89999999887776 7899999988 54322 2222345678999999884       55566667889999


Q ss_pred             eCCCCceEEEEec---CCCEEEEEEcCCCcEe
Q 033738           83 DFSTPELLKTIDV---KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~  111 (112)
                      |.. +.. ..+..   ...+..+++.++|..+
T Consensus        84 ~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~  113 (299)
T 2z2n_A           84 TKK-GII-KEYTLPNPDSAPYGITEGPNGDIW  113 (299)
T ss_dssp             CTT-SCE-EEEECSSTTCCEEEEEECTTSCEE
T ss_pred             CCC-CcE-EEEeCCCcCCCceeeEECCCCCEE
Confidence            976 433 33332   2378888888888653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.33  E-value=5.8e-05  Score=44.49  Aligned_cols=88  Identities=15%  Similarity=0.139  Sum_probs=61.2

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL   90 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~   90 (112)
                      +.|+|+++.|+...  ++.|..||..+++. ..+. ....+.++++++++.       ++++.  +..+.+||..+++..
T Consensus        18 p~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~-------l~v~~--~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           18 PVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGG-------YVATI--GTKFCALNWKEQSAV   86 (297)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSS-------EEEEE--TTEEEEEETTTTEEE
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCC-------EEEEE--CCeEEEEECCCCcEE
Confidence            88999776665554  69999999987653 3332 345688999999984       33332  568999999877654


Q ss_pred             EEEecC-----CCEEEEEEcCCCcEe
Q 033738           91 KTIDVK-----FPIFSMVRGKKGFAV  111 (112)
Q Consensus        91 ~~~~~~-----~~v~~~~~~~~~~~~  111 (112)
                      ......     ..+..+++.|+|+++
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~  112 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYF  112 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEE
Confidence            333321     157889999999854

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.31  E-value=1.7e-06  Score=55.76  Aligned_cols=94  Identities=14%  Similarity=0.100  Sum_probs=66.7

Q ss_pred             CCCeEEcCCCCEEEEEc--CCeEEEEeCCCCc------------eeeeccccCCceEEEEEecCCCCccceeEEEEeeec
Q 033738           10 SSPPAFSNDVKRLLVCT--SNTVSIFSTSTGL------------QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL   75 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   75 (112)
                      .+ +.++|||++++.++  +..|.++|+.+.+            ....+.. ......++|++++.       .+.+...
T Consensus       280 hG-v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~-------aY~t~~l  350 (595)
T 1fwx_A          280 HG-CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGN-------AYTSLFL  350 (595)
T ss_dssp             CC-EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSE-------EEEEETT
T ss_pred             eE-EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCe-------EEEEEec
Confidence            44 89999999988887  7999999998652            2233332 34457889999983       4557788


Q ss_pred             CCcEEEEeCCC----------CceEEEEecCCCE------EEEEEcCCCcEeC
Q 033738           76 DETIKYWDFST----------PELLKTIDVKFPI------FSMVRGKKGFAVF  112 (112)
Q Consensus        76 d~~i~~~~~~~----------~~~~~~~~~~~~v------~~~~~~~~~~~~~  112 (112)
                      |+++.+||+.+          ...+.++..+...      ..+..+|||+++|
T Consensus       351 dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~  403 (595)
T 1fwx_A          351 DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV  403 (595)
T ss_dssp             TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred             CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence            99999999876          4566666665432      1224468888775

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.30  E-value=1.4e-05  Score=49.22  Aligned_cols=89  Identities=15%  Similarity=0.165  Sum_probs=67.9

Q ss_pred             eEEcCCCCEEEEEc-----------CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738           13 PAFSNDVKRLLVCT-----------SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      +.++++++.++...           .+.|.++|+.+++.+..+... .++..++++++++  ..   ++++...++.+.+
T Consensus       285 ~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~--~~---ly~tn~~~~~VsV  358 (386)
T 3sjl_D          285 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEK--PL---LYALSTGDKTLYI  358 (386)
T ss_dssp             EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSS--CE---EEEEETTTTEEEE
T ss_pred             eeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCC--eE---EEEEcCCCCeEEE
Confidence            67888888877652           157999999999888877643 3567999999983  11   2334556899999


Q ss_pred             EeCCCCceEEEEecCCCEEEEEEcCC
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVRGKK  107 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~  107 (112)
                      +|..+++.+..+.....-..+.+++|
T Consensus       359 iD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          359 HDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             EECCCCcEEEEecCCCCCceeEECCc
Confidence            99999999999988776666777766

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.29  E-value=2.5e-05  Score=51.53  Aligned_cols=92  Identities=13%  Similarity=0.075  Sum_probs=55.9

Q ss_pred             CCCeEEcCCCCEEEEEc-CC--------------eEEEEeCCCCce--eeecc--ccCCceEEEEEecCCCCccceeEEE
Q 033738           10 SSPPAFSNDVKRLLVCT-SN--------------TVSIFSTSTGLQ--ISSLE--GHTAPVTTVIVVPASTPATKILSYC   70 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~-~~--------------~v~~~~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~   70 (112)
                      .. ++|+|| +.|+.++ ++              .|++|++.++..  ...+.  .+...+..+.|+|+++       ++
T Consensus       212 ~~-~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-------~l  282 (741)
T 1yr2_A          212 SG-LAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-------WV  282 (741)
T ss_dssp             CC-CEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-------EE
T ss_pred             cc-EEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-------EE
Confidence            44 899999 9888776 43              388999876542  12222  2223478899999995       33


Q ss_pred             Eeeec-----CCcEEEEeCCCC--ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           71 WTASL-----DETIKYWDFSTP--ELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        71 ~~~~~-----d~~i~~~~~~~~--~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +....     ...+++||+.++  ++...+..+. ...... .|+|+.+
T Consensus       283 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l  330 (741)
T 1yr2_A          283 VITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQL  330 (741)
T ss_dssp             EEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEE
T ss_pred             EEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEE
Confidence            33332     348999999876  4134443333 333333 3777654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.27  E-value=2.4e-05  Score=46.25  Aligned_cols=93  Identities=13%  Similarity=0.057  Sum_probs=61.9

Q ss_pred             CcCCCeEEcCCCCEEE-EEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            8 YVSSPPAFSNDVKRLL-VCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~-~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      .... +.|+|+|+.|+ +.. ++.|..|+.. ++ ...+......+..+++++++.       ++++...++.|..|+..
T Consensus        46 ~~eg-p~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~-------l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           46 WSEG-PAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQR-------LVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             SEEE-EEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSC-------EEEEETTTTEEEEECTT
T ss_pred             CccC-CeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCC-------EEEEECCCCEEEEECCC
Confidence            3445 88999998554 444 7899999874 54 344444556688999999985       44455556789999976


Q ss_pred             CCceEEEEec-C----CCEEEEEEcCCCcEe
Q 033738           86 TPELLKTIDV-K----FPIFSMVRGKKGFAV  111 (112)
Q Consensus        86 ~~~~~~~~~~-~----~~v~~~~~~~~~~~~  111 (112)
                       ++....... .    ..+..+++.|+|+..
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~  145 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIW  145 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEECTTSCEE
T ss_pred             -CCEEEEEeccCCCccCCCCCEEECCCCCEE
Confidence             553322211 1    145678889988764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.23  E-value=1.6e-05  Score=49.57  Aligned_cols=92  Identities=14%  Similarity=0.096  Sum_probs=63.9

Q ss_pred             eEEcCCCCEEEEEc-----------CCeEEEEeCCCCceeeecccc-------CCceEEEEEecCCCCccceeEEEEeee
Q 033738           13 PAFSNDVKRLLVCT-----------SNTVSIFSTSTGLQISSLEGH-------TAPVTTVIVVPASTPATKILSYCWTAS   74 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-----------~~~v~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~   74 (112)
                      +.++|||+.++.+.           ++.|.++|..+.+.+..+...       ......++++|+++       +++.+.
T Consensus       123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk-------~lyV~n  195 (426)
T 3c75_H          123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK-------NLLFYQ  195 (426)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS-------EEEEEE
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC-------EEEEEe
Confidence            89999998887664           468999999998877666421       12235779999995       333433


Q ss_pred             --cCCcEEEEeCCCCceEEEEecCCC--------EEEEEEcCCCcEe
Q 033738           75 --LDETIKYWDFSTPELLKTIDVKFP--------IFSMVRGKKGFAV  111 (112)
Q Consensus        75 --~d~~i~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~  111 (112)
                        .++.+.+.|..+++.+..+.....        -..+.++++|+.+
T Consensus       196 ~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~  242 (426)
T 3c75_H          196 FSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLA  242 (426)
T ss_dssp             CSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEE
T ss_pred             cCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEE
Confidence              367899999999988877765321        1124566777654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.21  E-value=7.1e-05  Score=43.79  Aligned_cols=92  Identities=10%  Similarity=0.085  Sum_probs=66.0

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecccc--CCc---eEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGH--TAP---VTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~--~~~---v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      ..+++|++.|+.+. ++.|.++|.++.+....+...  ..+   .+.++|. ++.       +++..-.+..|.+.|.++
T Consensus       130 ~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-------lyan~w~~~~I~vIDp~t  201 (262)
T 3nol_A          130 WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-------IFANVWQTNKIVRIDPET  201 (262)
T ss_dssp             CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-------EEEEETTSSEEEEECTTT
T ss_pred             eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-------EEEEEccCCeEEEEECCC
Confidence            45567787777766 788999999888777665532  122   3446775 552       455666678999999999


Q ss_pred             CceEEEEecC-------------CCEEEEEEcCCCcEeC
Q 033738           87 PELLKTIDVK-------------FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        87 ~~~~~~~~~~-------------~~v~~~~~~~~~~~~~  112 (112)
                      |+.+..+...             .-.+.++|+|+++.+|
T Consensus       202 G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf  240 (262)
T 3nol_A          202 GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF  240 (262)
T ss_dssp             CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred             CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence            9999888753             1357899999988775

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.20  E-value=0.00016  Score=41.99  Aligned_cols=94  Identities=11%  Similarity=-0.001  Sum_probs=63.7

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeec--cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL--EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      ..+.. ++++++|+..++.. ++.|..|+.+ ++ ...+  ......+..+++.+++.       ++++...++.+..||
T Consensus        57 ~~~~~-i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~-------l~v~~~~~~~i~~~d  126 (299)
T 2z2n_A           57 AKVMC-LTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGD-------IWFTEMNGNRIGRIT  126 (299)
T ss_dssp             CCEEE-EEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSC-------EEEEETTTTEEEEEC
T ss_pred             Cceee-EEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCC-------EEEEecCCceEEEEC
Confidence            44555 88899998888776 7889999976 33 2222  22345678899998884       555666678899999


Q ss_pred             CCCCceEEEEec--CCCEEEEEEcCCCcEe
Q 033738           84 FSTPELLKTIDV--KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        84 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~~  111 (112)
                      . +++.......  ...+..+++.++|..+
T Consensus       127 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~  155 (299)
T 2z2n_A          127 D-DGKIREYELPNKGSYPSFITLGSDNALW  155 (299)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred             C-CCCEEEecCCCCCCCCceEEEcCCCCEE
Confidence            8 5544332211  2367888888888653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.19  E-value=2.4e-05  Score=48.40  Aligned_cols=91  Identities=11%  Similarity=0.003  Sum_probs=59.2

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC--cEEEEeC
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE--TIKYWDF   84 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~~~~~   84 (112)
                      .... ++++++++++++.. ++.|+.||.+++........ ..... ++|++++.       .++.+..++  .+..++.
T Consensus       132 ~P~~-la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~-------~l~~~d~~~~~~I~~~d~  201 (409)
T 3hrp_A          132 YMWG-IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQ-------RVYSIGWEGTHTVYVYMK  201 (409)
T ss_dssp             CEEE-EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSS-------EEEEEBSSTTCEEEEEEG
T ss_pred             CceE-EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCC-------cEEEEecCCCceEEEEEc
Confidence            3444 88999998666666 69999999987754433333 22233 89999985       344555443  7888888


Q ss_pred             CCCceEEEE----e-cCCCEEEEEEcCCC
Q 033738           85 STPELLKTI----D-VKFPIFSMVRGKKG  108 (112)
Q Consensus        85 ~~~~~~~~~----~-~~~~v~~~~~~~~~  108 (112)
                      ..+.....+    . ....+..++++|++
T Consensus       202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~  230 (409)
T 3hrp_A          202 ASGWAPTRIGQLGSTFSGKIGAVALDETE  230 (409)
T ss_dssp             GGTTCEEEEEECCTTSCSCCCBCEECTTS
T ss_pred             CCCceeEEeeeccchhcCCcEEEEEeCCC
Confidence            766544444    2 22366778888843

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.18  E-value=5.2e-05  Score=44.56  Aligned_cols=95  Identities=6%  Similarity=-0.031  Sum_probs=59.7

Q ss_pred             CCcCCCeEEcCC-CCEEEEEcCCeEEEEeCCCCceeee-ccc----cCCceEEEEEecCCCCccceeEEEEeeecC----
Q 033738            7 SYVSSPPAFSND-VKRLLVCTSNTVSIFSTSTGLQISS-LEG----HTAPVTTVIVVPASTPATKILSYCWTASLD----   76 (112)
Q Consensus         7 ~~v~~~~~~~~~-~~~l~~~~~~~v~~~~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d----   76 (112)
                      ..+.. +.++++ |+++++.....|..||.+ ++.... ...    ....+..+++++++.       ++++...+    
T Consensus        71 ~~~~~-i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-------l~v~~~~~~~~~  141 (314)
T 1pjx_A           71 GIPAG-CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-------LWITAPAGEVAP  141 (314)
T ss_dssp             CCEEE-EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-------EEEEECBCBCTT
T ss_pred             CCCce-EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-------EEEEecCccccc
Confidence            45666 889999 766666555688999988 654322 211    123467899999885       44454443    


Q ss_pred             -----------CcEEEEeCCCCceEEEEecCCCEEEEEEc----CCCcEe
Q 033738           77 -----------ETIKYWDFSTPELLKTIDVKFPIFSMVRG----KKGFAV  111 (112)
Q Consensus        77 -----------~~i~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~  111 (112)
                                 +.+..++.. ++.............++++    |+|+.+
T Consensus       142 ~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l  190 (314)
T 1pjx_A          142 ADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQL  190 (314)
T ss_dssp             SCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEE
T ss_pred             ccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEE
Confidence                       567777765 5544333333356778888    888654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.18  E-value=0.00014  Score=43.52  Aligned_cols=88  Identities=9%  Similarity=-0.023  Sum_probs=59.8

Q ss_pred             eEEcCCCCEEEEE-c-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE
Q 033738           13 PAFSNDVKRLLVC-T-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL   90 (112)
Q Consensus        13 ~~~~~~~~~l~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~   90 (112)
                      +.|+|+++.++.. . ++.|..||.++++. ..+. ....+.++++++++.       ++++. . ..+.+||..+++..
T Consensus        54 p~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~v~~i~~~~dg~-------l~v~~-~-~gl~~~d~~~g~~~  122 (326)
T 2ghs_A           54 PTFDPASGTAWWFNILERELHELHLASGRK-TVHA-LPFMGSALAKISDSK-------QLIAS-D-DGLFLRDTATGVLT  122 (326)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEE-CSSCEEEEEEEETTE-------EEEEE-T-TEEEEEETTTCCEE
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEE-CCCcceEEEEeCCCe-------EEEEE-C-CCEEEEECCCCcEE
Confidence            7899986655544 4 68999999987653 3333 235688999999984       33333 3 45999998887654


Q ss_pred             EEEecC-----CCEEEEEEcCCCcEe
Q 033738           91 KTIDVK-----FPIFSMVRGKKGFAV  111 (112)
Q Consensus        91 ~~~~~~-----~~v~~~~~~~~~~~~  111 (112)
                      ......     ..+..+.++|+|+.+
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~~G~l~  148 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHPSGALW  148 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEE
T ss_pred             EEeeCCCCCCCCCCCCEEECCCCCEE
Confidence            333221     157889999998754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.17  E-value=4.5e-05  Score=45.11  Aligned_cols=90  Identities=16%  Similarity=0.067  Sum_probs=60.2

Q ss_pred             eEEcCCCCEEEEEc-C------CeEEEEeCCCCcee--eec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738           13 PAFSNDVKRLLVCT-S------NTVSIFSTSTGLQI--SSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~------~~v~~~~~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      ++|+||++.|+.+. .      +.|..|++......  ..+ ....+....+++.+++.       ++++. .+ .|.+|
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-------lwv~~-~~-gv~~~  263 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-------LWSSS-GT-GVCVF  263 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-------EEECC-SS-EEEEE
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-------EEEec-CC-cEEEE
Confidence            78999999777664 4      68999998654311  111 11223345678888884       33333 33 49999


Q ss_pred             eCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           83 DFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      +. +++.+..+..+..+.+++|.|+++.||
T Consensus       264 ~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~  292 (305)
T 3dr2_A          264 DS-DGQLLGHIPTPGTASNCTFDQAQQRLF  292 (305)
T ss_dssp             CT-TSCEEEEEECSSCCCEEEECTTSCEEE
T ss_pred             CC-CCCEEEEEECCCceeEEEEeCCCCEEE
Confidence            98 477777777666788899998887664

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.13  E-value=2.3e-05  Score=52.02  Aligned_cols=94  Identities=10%  Similarity=0.044  Sum_probs=58.1

Q ss_pred             cCCCeEEc-CCCCEEEEEc--C----CeEEEEeCCCC-ceee-eccccCCceEEEEEecCCCCccceeEEEEeeec-C--
Q 033738            9 VSSPPAFS-NDVKRLLVCT--S----NTVSIFSTSTG-LQIS-SLEGHTAPVTTVIVVPASTPATKILSYCWTASL-D--   76 (112)
Q Consensus         9 v~~~~~~~-~~~~~l~~~~--~----~~v~~~~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-d--   76 (112)
                      +.. .+|| |||+.++.+.  +    ..|+++|+.++ +.+. .+..   ....++|+|++.   .++   .+... .  
T Consensus       176 ~~~-~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~---~l~---y~~~d~~~~  245 (751)
T 2xe4_A          176 VME-VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHT---SLF---YVTKDETLR  245 (751)
T ss_dssp             EEE-EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTT---EEE---EEEECTTCC
T ss_pred             Eee-eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCC---EEE---EEEECCCCC
Confidence            444 8999 9999988664  2    25999999988 5321 1111   124678999984   232   22221 1  


Q ss_pred             -CcEEEEeCCCCce--EEEEec--CCCEEEEEEcCCCcEeC
Q 033738           77 -ETIKYWDFSTPEL--LKTIDV--KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        77 -~~i~~~~~~~~~~--~~~~~~--~~~v~~~~~~~~~~~~~  112 (112)
                       ..|+.+++.++..  ...+..  ......+.|+|||++|+
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~  286 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLC  286 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEE
Confidence             3578888877642  233332  22566789999998763

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.13  E-value=9.9e-05  Score=43.28  Aligned_cols=92  Identities=7%  Similarity=-0.016  Sum_probs=66.2

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecccc--CC---ceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGH--TA---PVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      ..+++|++.|+.+. ++.+.++|.++.+....+...  ..   .++.++|. ++.       +++....+..|.+.|.++
T Consensus       139 wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-------lyanvw~s~~I~vIDp~T  210 (268)
T 3nok_A          139 WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-------IYANIWHSSDVLEIDPAT  210 (268)
T ss_dssp             CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-------EEEEETTCSEEEEECTTT
T ss_pred             eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-------EEEEECCCCeEEEEeCCC
Confidence            34557788887776 789999999988777666532  11   33556766 553       455665678999999999


Q ss_pred             CceEEEEecC--------------CCEEEEEEcCCCcEeC
Q 033738           87 PELLKTIDVK--------------FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        87 ~~~~~~~~~~--------------~~v~~~~~~~~~~~~~  112 (112)
                      |+.+..+...              .-.+.++|+|+++.+|
T Consensus       211 G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlf  250 (268)
T 3nok_A          211 GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIF  250 (268)
T ss_dssp             CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEE
T ss_pred             CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEE
Confidence            9998887642              1468899999887665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.12  E-value=0.00011  Score=46.27  Aligned_cols=92  Identities=7%  Similarity=0.085  Sum_probs=64.9

Q ss_pred             eEEcCCCCEEEEEc-C------CeEEEEeCCCCceeeeccccCCc---eEEEEEecCCCCccceeEEEEeee--------
Q 033738           13 PAFSNDVKRLLVCT-S------NTVSIFSTSTGLQISSLEGHTAP---VTTVIVVPASTPATKILSYCWTAS--------   74 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~------~~v~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~--------   74 (112)
                      +..+|+| .+++.. +      +.+.++|.++.+.+..+.....+   -..+.|+|+++       .+++..        
T Consensus       143 ~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-------~mvsS~wg~p~~~~  214 (462)
T 2ece_A          143 VHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-------VLVSSEWAVPNTIE  214 (462)
T ss_dssp             EEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT-------EEEECBCCCHHHHT
T ss_pred             eeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCC-------EEEEccCcCccccc
Confidence            4567899 655543 3      68999999999888887633222   23578899985       444553        


Q ss_pred             -----------cCCcEEEEeCCCCceEEEEecCC---CEEEEEE--cCCCcEeC
Q 033738           75 -----------LDETIKYWDFSTPELLKTIDVKF---PIFSMVR--GKKGFAVF  112 (112)
Q Consensus        75 -----------~d~~i~~~~~~~~~~~~~~~~~~---~v~~~~~--~~~~~~~~  112 (112)
                                 ...+|.+||+.+++.+.++....   ....+.|  +|+|++.|
T Consensus       215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aY  268 (462)
T 2ece_A          215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGF  268 (462)
T ss_dssp             TCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEE
T ss_pred             cccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEE
Confidence                       36899999999988888887652   3445555  99998765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.11  E-value=6.2e-05  Score=46.60  Aligned_cols=92  Identities=11%  Similarity=0.148  Sum_probs=58.1

Q ss_pred             eEEcCCCCEEEEEc-CC--eEEEEeCCCCceeeec----cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738           13 PAFSNDVKRLLVCT-SN--TVSIFSTSTGLQISSL----EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~--~v~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      ++|+++++.|+.+. ++  .|.+++...+.....+    ........+++++|+..      .+++ +..++.|+.||..
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g------~lyv-~d~~~~I~~~d~~  248 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE------WLYF-VDSNKNFGRFNVK  248 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS------EEEE-ECTTCEEEEEETT
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC------eEEE-EECCCcEEEEECC
Confidence            78999999888887 43  8999987755433333    21345567899999432      1333 5567899999998


Q ss_pred             CCceEEE----EecCC-C--EEEEEEcCCCcEe
Q 033738           86 TPELLKT----IDVKF-P--IFSMVRGKKGFAV  111 (112)
Q Consensus        86 ~~~~~~~----~~~~~-~--v~~~~~~~~~~~~  111 (112)
                      ++.....    ..... .  ...++|+|++..+
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            7654322    11111 1  2289999964444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.08  E-value=0.00031  Score=40.70  Aligned_cols=92  Identities=14%  Similarity=0.108  Sum_probs=65.2

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccC-----CceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHT-----APVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      ..+.+|++.|+.+. ++.|.++|.++.+....+....     ..++.+.+. ++.       +++....+..|.+.|.++
T Consensus       108 wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-------lyanvw~s~~I~vIDp~t  179 (243)
T 3mbr_X          108 WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-------LLANVWLTSRIARIDPAS  179 (243)
T ss_dssp             CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-------EEEEETTTTEEEEECTTT
T ss_pred             eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-------EEEEECCCCeEEEEECCC
Confidence            45667787777776 7899999999887776665321     233456655 452       445555677999999999


Q ss_pred             CceEEEEecC--------------CCEEEEEEcCCCcEeC
Q 033738           87 PELLKTIDVK--------------FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        87 ~~~~~~~~~~--------------~~v~~~~~~~~~~~~~  112 (112)
                      |+.+..+...              .-.+.++++|+++.+|
T Consensus       180 G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf  219 (243)
T 3mbr_X          180 GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF  219 (243)
T ss_dssp             CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred             CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence            9998887632              1457899999888765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.06  E-value=0.00034  Score=40.49  Aligned_cols=93  Identities=12%  Similarity=0.035  Sum_probs=60.0

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL   90 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~   90 (112)
                      ++++++++.|+.+.  ++.|..++.+.......+.........+++++++.      .++++....+.|.+++.......
T Consensus        41 i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~------~lyv~d~~~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGR------TIFWTDSQLDRIEVAKMDGTQRR  114 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTT------EEEEEETTTTEEEEEETTSCSCE
T ss_pred             EEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCC------eEEEEECCCCEEEEEEcCCCCEE
Confidence            78888877776665  68999999876543323322224568899998653      24456666788999998643332


Q ss_pred             EEEecC-CCEEEEEEcCCCcEe
Q 033738           91 KTIDVK-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        91 ~~~~~~-~~v~~~~~~~~~~~~  111 (112)
                      ...... .....++++|++..+
T Consensus       115 ~~~~~~~~~P~~i~vd~~~g~l  136 (267)
T 1npe_A          115 VLFDTGLVNPRGIVTDPVRGNL  136 (267)
T ss_dssp             EEECSSCSSEEEEEEETTTTEE
T ss_pred             EEEECCCCCccEEEEeeCCCEE
Confidence            222222 366788898865544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.02  E-value=0.00015  Score=42.57  Aligned_cols=91  Identities=9%  Similarity=-0.033  Sum_probs=59.8

Q ss_pred             CCCeEEcCCCCEEEEEc---CCeEEEEeCCCCceeeeccccCCc-eEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738           10 SSPPAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSLEGHTAP-VTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~---~~~v~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      .. +.+++|+.++++.+   ++.|+++|+.+++.+..+...... ...+++.  +.      .++++...++.+.++|..
T Consensus        24 ~G-l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~------~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           24 QG-LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NE------KLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             EE-EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TT------EEEEEETTCSEEEEEETT
T ss_pred             cc-EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CC------EEEEEEecCCEEEEEECC
Confidence            45 89999875555544   479999999999887776532222 2344554  32      144456678899999999


Q ss_pred             CCceEEEEecC-CCEEEEEEcCCCcEe
Q 033738           86 TPELLKTIDVK-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        86 ~~~~~~~~~~~-~~v~~~~~~~~~~~~  111 (112)
                      +.+.+.++... ..-  ..++++|+.+
T Consensus        95 t~~v~~~i~~g~~~g--~glt~Dg~~l  119 (266)
T 2iwa_A           95 TLSNIKNFTHQMKDG--WGLATDGKIL  119 (266)
T ss_dssp             TTEEEEEEECCSSSC--CEEEECSSSE
T ss_pred             CCcEEEEEECCCCCe--EEEEECCCEE
Confidence            99988888755 221  2344566544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.98  E-value=7.4e-05  Score=49.12  Aligned_cols=74  Identities=12%  Similarity=0.033  Sum_probs=50.4

Q ss_pred             CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC--CEEEEEEc
Q 033738           28 NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF--PIFSMVRG  105 (112)
Q Consensus        28 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~  105 (112)
                      +.|..||+.+++..-.+.. ..+.....+..++.       .++.++.|+.++.||.++|+.+..+..+.  ...-+.|.
T Consensus       457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~-------~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~  528 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGN-------VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYM  528 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTT-------EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred             cEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCC-------EEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEE
Confidence            6799999999987666543 23333344555553       44467889999999999999998887654  22334555


Q ss_pred             CCCc
Q 033738          106 KKGF  109 (112)
Q Consensus       106 ~~~~  109 (112)
                      ++|+
T Consensus       529 ~~G~  532 (677)
T 1kb0_A          529 VDGR  532 (677)
T ss_dssp             ETTE
T ss_pred             eCCE
Confidence            6665

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.95  E-value=0.00027  Score=46.51  Aligned_cols=93  Identities=12%  Similarity=0.080  Sum_probs=54.4

Q ss_pred             eEEcCCCCEEEEEc-CC-------------eEEEEeCCCCce--eeec--cc-cCCceEEEEEecCCCCccceeEEEEe-
Q 033738           13 PAFSNDVKRLLVCT-SN-------------TVSIFSTSTGLQ--ISSL--EG-HTAPVTTVIVVPASTPATKILSYCWT-   72 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~-------------~v~~~~~~~~~~--~~~~--~~-~~~~v~~~~~~~~~~~~~~~~~~~~~-   72 (112)
                      ++|+ ||+.|+.++ +.             .|++|++.++..  ...+  .. +......+.++|+++   .++ +... 
T Consensus       180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~---~l~-~~~~~  254 (693)
T 3iuj_A          180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDR---FLL-ISAAN  254 (693)
T ss_dssp             CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSC---EEE-EEEES
T ss_pred             EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCC---EEE-EEEcc
Confidence            8999 999888776 53             499999876532  2222  22 334467889999995   332 2111 


Q ss_pred             eecCCcEEEEeCCCCc-eEEEEecCC-CEEEEEEcCCCcEe
Q 033738           73 ASLDETIKYWDFSTPE-LLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        73 ~~~d~~i~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .+....++++|+.++. ....+..+. ..... ++++|..+
T Consensus       255 ~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l  294 (693)
T 3iuj_A          255 STSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTL  294 (693)
T ss_dssp             SSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEE
T ss_pred             CCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEE
Confidence            2234589999987763 333443333 33333 45555443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.95  E-value=0.00063  Score=39.53  Aligned_cols=94  Identities=17%  Similarity=0.083  Sum_probs=64.5

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee-eccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS-SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      ....+ +.++++|+..++.. ++.|..+|.. ++... .+......+..+++.+++.       ++++...++.+..+|.
T Consensus        20 ~~p~~-i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-------l~v~~~~~~~v~~~d~   90 (300)
T 2qc5_A           20 SGPYG-ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-------IWFTENGANKIGKLSK   90 (300)
T ss_dssp             CCEEE-EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-------EEEEETTTTEEEEECT
T ss_pred             CCcce-eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-------EEEEecCCCeEEEECC
Confidence            34555 88899999887776 7999999987 54332 2222335678899988884       5556666788999998


Q ss_pred             CCCceEEEEec---CCCEEEEEEcCCCcEe
Q 033738           85 STPELLKTIDV---KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        85 ~~~~~~~~~~~---~~~v~~~~~~~~~~~~  111 (112)
                      . ++.. .+..   ...+..+++.++|+.+
T Consensus        91 ~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~  118 (300)
T 2qc5_A           91 K-GGFT-EYPLPQPDSGPYGITEGLNGDIW  118 (300)
T ss_dssp             T-SCEE-EEECSSTTCCEEEEEECSTTCEE
T ss_pred             C-CCeE-EecCCCCCCCCccceECCCCCEE
Confidence            7 5543 3332   2368888888888654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.94  E-value=0.00014  Score=47.95  Aligned_cols=75  Identities=11%  Similarity=-0.023  Sum_probs=51.2

Q ss_pred             CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC--CEEEEEEc
Q 033738           28 NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF--PIFSMVRG  105 (112)
Q Consensus        28 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~  105 (112)
                      +.+..||+.+++..-.++.+. +...-.+...+.       +++.++.|+.++.||.++|+.+..+..+.  ...-+.|.
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg-------lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~  526 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGN-------LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYS  526 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-------EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred             eeEEEEECCCCCeEeEccCCC-CccCccceECCC-------EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEE
Confidence            668999999998776655432 222224444553       45577899999999999999998887654  22335566


Q ss_pred             CCCcE
Q 033738          106 KKGFA  110 (112)
Q Consensus       106 ~~~~~  110 (112)
                      .+|+.
T Consensus       527 ~~G~q  531 (689)
T 1yiq_A          527 VDGEQ  531 (689)
T ss_dssp             ETTEE
T ss_pred             ECCEE
Confidence            67653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.89  E-value=0.00049  Score=43.39  Aligned_cols=94  Identities=12%  Similarity=0.048  Sum_probs=60.9

Q ss_pred             eEEcCCCCEEEEEc--------------------CCeEEEEeCCCCceeeecccc-C-CceEEEEE--ecCCCCccceeE
Q 033738           13 PAFSNDVKRLLVCT--------------------SNTVSIFSTSTGLQISSLEGH-T-APVTTVIV--VPASTPATKILS   68 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--------------------~~~v~~~~~~~~~~~~~~~~~-~-~~v~~~~~--~~~~~~~~~~~~   68 (112)
                      +.|+|+++.+++..                    +..|.+||+.+++.+..+... . .....+.|  +|+++      .
T Consensus       193 ~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~------~  266 (462)
T 2ece_A          193 FWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKL------M  266 (462)
T ss_dssp             EEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCC------E
T ss_pred             EEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCC------E
Confidence            67899999988884                    589999999988766666542 1 23345555  88885      1


Q ss_pred             EEEeee-----cCCcEEEEeCCCCce--EEEE--ec-----------------CCCEEEEEEcCCCcEeC
Q 033738           69 YCWTAS-----LDETIKYWDFSTPEL--LKTI--DV-----------------KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        69 ~~~~~~-----~d~~i~~~~~~~~~~--~~~~--~~-----------------~~~v~~~~~~~~~~~~~  112 (112)
                      .++++.     .+++|.+|....|..  .+.+  ..                 ......+.+++||++||
T Consensus       267 aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLY  336 (462)
T 2ece_A          267 GFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLY  336 (462)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEE
T ss_pred             EEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEE
Confidence            233444     667887766554421  1111  00                 13467788999999886

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.89  E-value=0.00082  Score=39.05  Aligned_cols=94  Identities=10%  Similarity=-0.060  Sum_probs=63.4

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee-eccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS-SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      ..+.. ++++++|+..++.. ++.|..+|.. ++... ........+..+++.+++.       ++++...++.+..+|.
T Consensus        62 ~~~~~-i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-------l~v~~~~~~~i~~~~~  132 (300)
T 2qc5_A           62 AKVMC-LIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-------IWFTQLNGDRIGKLTA  132 (300)
T ss_dssp             CCEEE-EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC-------EEEEETTTTEEEEECT
T ss_pred             Cccee-EEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCC-------EEEEccCCCeEEEECC
Confidence            34555 78889998777776 6889999987 54321 2222335678899998884       5556666788999998


Q ss_pred             CCCceEEE-Eec-CCCEEEEEEcCCCcE
Q 033738           85 STPELLKT-IDV-KFPIFSMVRGKKGFA  110 (112)
Q Consensus        85 ~~~~~~~~-~~~-~~~v~~~~~~~~~~~  110 (112)
                      . ++.... ... ...+..+++.++|+.
T Consensus       133 ~-g~~~~~~~~~~~~~~~~i~~d~~g~l  159 (300)
T 2qc5_A          133 D-GTIYEYDLPNKGSYPAFITLGSDNAL  159 (300)
T ss_dssp             T-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred             C-CCEEEccCCCCCCCceeEEECCCCCE
Confidence            7 554422 221 236788888888874

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.85  E-value=0.00082  Score=39.25  Aligned_cols=100  Identities=14%  Similarity=0.208  Sum_probs=67.1

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccc-cCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEG-HTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |-...+.. ++++|++..|++..  ++.|...|.+ ++.++.+.- .....-.+++.+++.       ++++.-.++.+.
T Consensus        24 g~~~~lSG-la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-------~~vs~E~~~~l~   94 (255)
T 3qqz_A           24 GITNNISS-LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-------FVISDERDYAIY   94 (255)
T ss_dssp             TCCSCEEE-EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-------EEEEETTTTEEE
T ss_pred             CcccCcce-eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-------EEEEECCCCcEE
Confidence            43456776 99999988777655  6889999988 776666542 224567888887773       555666678888


Q ss_pred             EEeCCCCc---eEEEEec-----C--CCEEEEEEcCCCcEeC
Q 033738           81 YWDFSTPE---LLKTIDV-----K--FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        81 ~~~~~~~~---~~~~~~~-----~--~~v~~~~~~~~~~~~~  112 (112)
                      ++++....   .+.....     +  .....++|+|.++.+|
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~  136 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFW  136 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEE
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEE
Confidence            88876533   2233321     1  1568999999887654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.85  E-value=0.00016  Score=43.53  Aligned_cols=95  Identities=7%  Similarity=-0.050  Sum_probs=60.7

Q ss_pred             cCCCeEEcCCCCEEEEEc-C-CeEEEEeCCC---Cc-----eeee--ccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738            9 VSSPPAFSNDVKRLLVCT-S-NTVSIFSTST---GL-----QISS--LEGHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~-~~v~~~~~~~---~~-----~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      +.. ++++|||+.|+.+. . ..+..++...   +.     ....  ..++.+....+++++++.       ++++...+
T Consensus       197 ~~g-ia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-------l~va~~~~  268 (343)
T 2qe8_A          197 VNG-IVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-------IYVGDLAH  268 (343)
T ss_dssp             EEE-EEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-------EEEEEGGG
T ss_pred             cce-eEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-------EEEEccCC
Confidence            355 89999999888776 3 5666665421   11     0001  112233445788999885       66677788


Q ss_pred             CcEEEEeCCCCceEEEEecC--CCEEEEEEcCCCcEe
Q 033738           77 ETIKYWDFSTPELLKTIDVK--FPIFSMVRGKKGFAV  111 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~  111 (112)
                      +.|.+||..+|+.......+  .....+++.++|..+
T Consensus       269 ~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~  305 (343)
T 2qe8_A          269 SAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLY  305 (343)
T ss_dssp             TEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEE
T ss_pred             CeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEE
Confidence            99999998567644333332  268899999888654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.83  E-value=0.00092  Score=41.91  Aligned_cols=98  Identities=16%  Similarity=0.201  Sum_probs=66.2

Q ss_pred             CcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCce------------eeeccc------cCCceEEEEEecCCCCccceeEE
Q 033738            8 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQ------------ISSLEG------HTAPVTTVIVVPASTPATKILSY   69 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~------------~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~   69 (112)
                      .+.. +..+|+|++|+..++..|.+..+..+..            .+.+.-      ...+|..+.|+|-+..+..++  
T Consensus        67 ~i~q-lvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LV--  143 (452)
T 3pbp_A           67 DTFH-VISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIV--  143 (452)
T ss_dssp             TTCE-EEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEE--
T ss_pred             ceeE-EEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEE--
Confidence            3555 8899999999999989999998873210            111211      246799999999875444454  


Q ss_pred             EEeeecCCcEEEEeCCCCc--eEEEEe-------cC---CCEEEEEEcCCCcEe
Q 033738           70 CWTASLDETIKYWDFSTPE--LLKTID-------VK---FPIFSMVRGKKGFAV  111 (112)
Q Consensus        70 ~~~~~~d~~i~~~~~~~~~--~~~~~~-------~~---~~v~~~~~~~~~~~~  111 (112)
                        .-..|+.|++||+....  +. .+.       ..   ..+.+++|.+++-.+
T Consensus       144 --VLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTL  194 (452)
T 3pbp_A          144 --VLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTL  194 (452)
T ss_dssp             --EEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCE
T ss_pred             --EEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEE
Confidence              77889999999987532  22 221       11   267888888766433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.70  E-value=0.00064  Score=39.82  Aligned_cols=77  Identities=4%  Similarity=-0.061  Sum_probs=51.5

Q ss_pred             eEEcCCCCEEEEEc-CC--eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738           13 PAFSNDVKRLLVCT-SN--TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~   89 (112)
                      +.++ ++.++.+.+ ++  .|+.+|+++++.+..+..... .......+++.      .++.....++.+.++|..+.+.
T Consensus        48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~------~ly~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           48 FFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKD------KIVGLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETT------EEEEEESSSSEEEEEETTTCCE
T ss_pred             EEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCC------EEEEEEeeCCEEEEEECccCcE
Confidence            7777 565445555 44  899999999988777654332 33333333443      1334555688999999999999


Q ss_pred             EEEEecCC
Q 033738           90 LKTIDVKF   97 (112)
Q Consensus        90 ~~~~~~~~   97 (112)
                      +.++....
T Consensus       120 ~~ti~~~~  127 (262)
T 3nol_A          120 VRSFNYDG  127 (262)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            88887644

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.68  E-value=6.1e-05  Score=45.96  Aligned_cols=67  Identities=19%  Similarity=0.127  Sum_probs=41.3

Q ss_pred             CCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEE
Q 033738           18 DVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTI   93 (112)
Q Consensus        18 ~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~   93 (112)
                      ++..+++++ |+.++.||..+++....+..  +.+.+..+..++.       .++.++.|+.++.||..+|+.+..+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~-------~~v~~s~dg~l~a~d~~tG~~~w~~   75 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEP-------AFLPDPNDGSLYTLGSKNNEGLTKL   75 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----C-------CEEECTTTCCEEEC-----CCSEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCC-------EEEEeCCCCEEEEEECCCCceeeee
Confidence            567777777 89999999999987766654  3343333444553       4456788999999999888765544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.64  E-value=0.00094  Score=39.24  Aligned_cols=76  Identities=8%  Similarity=-0.019  Sum_probs=49.6

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK   91 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~   91 (112)
                      +.++ ++.++.+.+ ++.|+.+|+++++.+..+ -. .........+++.   +   ++.....++.+.++|..+.+.+.
T Consensus        60 L~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~---~---Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           60 LVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE---R---LYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             EEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS---C---EEEEESSSCEEEEEETTTTEEEE
T ss_pred             EEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC---E---EEEEEccCCEEEEEECCcCcEEE
Confidence            6665 234444445 688999999999877666 22 2233322333442   1   33456678899999999999998


Q ss_pred             EEecCC
Q 033738           92 TIDVKF   97 (112)
Q Consensus        92 ~~~~~~   97 (112)
                      ++....
T Consensus       131 ti~~~~  136 (268)
T 3nok_A          131 TTRYSG  136 (268)
T ss_dssp             EEECSS
T ss_pred             EEeCCC
Confidence            887644

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.54  E-value=0.0047  Score=38.01  Aligned_cols=97  Identities=6%  Similarity=-0.066  Sum_probs=59.1

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      ... ++|++.+..|+...  .+.|..++++.......+.........+++.+.+.      .++++-...+.|.+.++..
T Consensus       118 ~~g-l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g------~lY~~d~~~~~I~~~~~dg  190 (386)
T 3v65_B          118 AIA-LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD------KLYWTDSGTSRIEVANLDG  190 (386)
T ss_dssp             EEE-EEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTT------EEEEEETTTTEEEECBTTS
T ss_pred             cEE-EEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCC------eEEEEcCCCCeEEEEeCCC
Confidence            344 78888777776665  68899888876543333322223345778887553      2445666677888888764


Q ss_pred             CceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738           87 PELLKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        87 ~~~~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      ......+... .....+++.|.+..||
T Consensus       191 ~~~~~l~~~~l~~P~giavdp~~g~ly  217 (386)
T 3v65_B          191 AHRKVLLWQSLEKPRAIALHPMEGTIY  217 (386)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             CceEEeecCCCCCCcEEEEEcCCCeEE
Confidence            4333333322 2677888888766554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.52  E-value=0.0018  Score=43.22  Aligned_cols=72  Identities=10%  Similarity=0.001  Sum_probs=45.0

Q ss_pred             CeEEcCCCCEEEEEc-C-----CeEEEEeCCCCcee--eecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738           12 PPAFSNDVKRLLVCT-S-----NTVSIFSTSTGLQI--SSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus        12 ~~~~~~~~~~l~~~~-~-----~~v~~~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      .+.|+|||+.|+... +     ..|+.+++.++...  ..+. ........+.|+|+++   .++ +.........++++
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~---~l~-~~~~~~~~~~l~~~  300 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTN---TLC-IGSQSPETAEVHLL  300 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSS---EEE-EEEECSSCEEEEEE
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCC---EEE-EEecCCCCceEEEE
Confidence            389999998887765 4     36888888765321  2222 2223456788999994   333 22222334578888


Q ss_pred             eCCCC
Q 033738           83 DFSTP   87 (112)
Q Consensus        83 ~~~~~   87 (112)
                      |+.++
T Consensus       301 d~~~~  305 (751)
T 2xe4_A          301 DLRKG  305 (751)
T ss_dssp             ESSSC
T ss_pred             ECCCC
Confidence            98765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.43  E-value=0.0064  Score=36.90  Aligned_cols=97  Identities=6%  Similarity=-0.066  Sum_probs=59.9

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      ... ++|++.++.|+...  .+.|..++++.......+.........+++.+.+.      .++.+....+.|.+.+...
T Consensus        75 ~~~-l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g------~ly~~d~~~~~I~~~~~dG  147 (349)
T 3v64_C           75 AIA-LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD------KLYWTDSGTSRIEVANLDG  147 (349)
T ss_dssp             EEE-EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT------EEEEEETTTTEEEEEETTS
T ss_pred             eEE-EEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCC------eEEEEcCCCCeEEEEcCCC
Confidence            344 78888777777665  58888888876543332222223346788887553      2445666678899998874


Q ss_pred             CceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738           87 PELLKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        87 ~~~~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      .......... .....+++.|.+..+|
T Consensus       148 ~~~~~l~~~~l~~P~~iavdp~~g~ly  174 (349)
T 3v64_C          148 AHRKVLLWQSLEKPRAIALHPMEGTIY  174 (349)
T ss_dssp             CSCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred             CceEEEEeCCCCCcceEEEecCcCeEE
Confidence            4333333222 2677888888665553

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.38  E-value=0.0059  Score=35.29  Aligned_cols=97  Identities=5%  Similarity=-0.022  Sum_probs=57.7

Q ss_pred             CcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec--CCcEEEEe
Q 033738            8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL--DETIKYWD   83 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~   83 (112)
                      .... +++++++..++.+.  .+.|.+++.+.................++++|++.      .++++...  .+.|..++
T Consensus        80 ~p~~-ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g------~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A           80 SPEG-IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRG------NLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             CEEE-EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT------EEEEEECCSSSCEEEEEE
T ss_pred             CccE-EEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCC------EEEEEECCCCCcEEEEEe
Confidence            3444 78888776666554  68999999864322222222224467899999653      12334333  46788888


Q ss_pred             CCCCceEEEEe-cC-CCEEEEEEcCCCcEeC
Q 033738           84 FSTPELLKTID-VK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        84 ~~~~~~~~~~~-~~-~~v~~~~~~~~~~~~~  112 (112)
                      +.. .....+. .. .....+++++++..+|
T Consensus       153 ~dg-~~~~~~~~~~~~~P~gia~d~~~~~ly  182 (267)
T 1npe_A          153 MDG-TNRRILAQDNLGLPNGLTFDAFSSQLC  182 (267)
T ss_dssp             TTS-CCCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred             cCC-CCcEEEEECCCCCCcEEEEcCCCCEEE
Confidence            753 3333332 22 2678889999877664

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.37  E-value=0.0064  Score=36.14  Aligned_cols=95  Identities=13%  Similarity=0.011  Sum_probs=55.3

Q ss_pred             cCCCeEEcC-CCCEEEEEcCCeEEEEeCCCCceeeeccc-----cCCceEEEEEec-CCCCccceeEEEEeee-------
Q 033738            9 VSSPPAFSN-DVKRLLVCTSNTVSIFSTSTGLQISSLEG-----HTAPVTTVIVVP-ASTPATKILSYCWTAS-------   74 (112)
Q Consensus         9 v~~~~~~~~-~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~~~~~~~~~~-------   74 (112)
                      ... +++.+ +++++++...+.+..+|..++. +..+..     .......+++.+ ++.       ++++..       
T Consensus        82 p~g-i~~~~~~g~l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~-------l~v~d~~~~~~~~  152 (322)
T 2fp8_A           82 TYD-ISYNLQNNQLYIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGI-------VYFTDVSTLYDDR  152 (322)
T ss_dssp             EEE-EEEETTTTEEEEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCC-------EEEEESCSSCCTT
T ss_pred             Cce-EEEcCCCCcEEEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCE-------EEEECCccccccc
Confidence            444 77887 5655554445558888876553 222211     113457889999 885       333332       


Q ss_pred             ----------cCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           75 ----------LDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        75 ----------~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                                .++.+..+|..+++.......-.....++++|+|+.+|
T Consensus       153 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~ly  200 (322)
T 2fp8_A          153 GVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVL  200 (322)
T ss_dssp             CHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEE
T ss_pred             ccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEE
Confidence                      13678888887665433332223455688999987553

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.34  E-value=0.0075  Score=37.69  Aligned_cols=94  Identities=12%  Similarity=0.148  Sum_probs=55.7

Q ss_pred             cCCCeEEcCCCCEEEEEc--CC----eEEEEeCCCCcee--eeccccCCceEEEEEec-CCCCccceeEEEEeeecCCcE
Q 033738            9 VSSPPAFSNDVKRLLVCT--SN----TVSIFSTSTGLQI--SSLEGHTAPVTTVIVVP-ASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~----~v~~~~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      ... ++++++|+.|+.+.  ++    .+..++.. +...  ..+.. ......++++| ++.       ++++-..++.|
T Consensus       181 P~~-ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~-------lyv~d~~~~~V  250 (430)
T 3tc9_A          181 VRT-ICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGE-------LYFNSWNAGQV  250 (430)
T ss_dssp             EEE-EEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCC-------EEEEETTTTEE
T ss_pred             cce-EEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCE-------EEEEECCCCEE
Confidence            344 88999998665554  22    33444432 2211  22221 23346788899 553       45566677899


Q ss_pred             EEEeCCCCceEEEEecC--CCEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVK--FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~  112 (112)
                      +.++...+.........  .....++|+|+|+++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          251 FRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             EEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred             EEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence            99998866543333322  2567899999998654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.31  E-value=0.0028  Score=41.29  Aligned_cols=88  Identities=15%  Similarity=0.036  Sum_probs=62.3

Q ss_pred             CCCEEEEEc--CCeEEEEeCCCCceeeeccc-cCCceEEEEE-e-cCCCCccceeEEEEeee------------------
Q 033738           18 DVKRLLVCT--SNTVSIFSTSTGLQISSLEG-HTAPVTTVIV-V-PASTPATKILSYCWTAS------------------   74 (112)
Q Consensus        18 ~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~~~~~~~~~~~~~------------------   74 (112)
                      ||++++...  ++.|.+.|+++.+....+.. .......+++ + |++.       +++.++                  
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~-------~v~~~~~~~~p~~~dg~~l~~~~~  172 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-------YVFCNGEDETPLVNDGTNMEDVAN  172 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-------EEEEEECSCEESSCSSSSTTCGGG
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc-------EEEEecccccccCCCCcccccccc
Confidence            788877665  58899999999886663331 2234567777 4 7775       433442                  


Q ss_pred             cCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           75 LDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        75 ~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      .++.+.+.|..+.+...++........++.+|+|+++|
T Consensus       173 ~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~  210 (595)
T 1fwx_A          173 YVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAF  210 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEE
T ss_pred             cCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEE
Confidence            24579999999988888887644556678899998875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.31  E-value=0.0087  Score=35.73  Aligned_cols=97  Identities=9%  Similarity=-0.027  Sum_probs=57.7

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCC----CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTST----GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      ... ++|+++++.|+.+.  ++.|..+++..    ......+.........+++.+.+.      .++++-...+.|.+.
T Consensus        32 p~g-~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~------~ly~~d~~~~~I~~~  104 (316)
T 1ijq_A           32 VVA-LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS------NIYWTDSVLGTVSVA  104 (316)
T ss_dssp             EEE-EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT------EEEEEETTTTEEEEE
T ss_pred             eEE-EEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC------eEEEEECCCCEEEEE
Confidence            345 78888777777665  68999999875    221222222223446888886543      244566677889999


Q ss_pred             eCCCCceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738           83 DFSTPELLKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        83 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      +............. .....+++.|.+..+|
T Consensus       105 ~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly  135 (316)
T 1ijq_A          105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMY  135 (316)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             eCCCCceEEEEECCCCCcceEEeCCCCCEEE
Confidence            98744333333322 3677888888665543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.29  E-value=0.0038  Score=40.44  Aligned_cols=62  Identities=16%  Similarity=0.111  Sum_probs=40.6

Q ss_pred             CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738           28 NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        28 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~   97 (112)
                      +.+..+|..+++....+... ..+........+.       .++.++.|+.++.+|.++|+.+..+....
T Consensus       444 g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg-------~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  505 (571)
T 2ad6_A          444 GQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGG-------LVWYATLDGYLKALDNKDGKELWNFKMPS  505 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTT-------EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CeEEEEECCCCCEEEEecCC-CCccceeEEECCC-------EEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence            67888888888766555422 1122222222332       33457889999999999999998887654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.26  E-value=0.0036  Score=40.70  Aligned_cols=75  Identities=15%  Similarity=0.183  Sum_probs=46.9

Q ss_pred             CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEE--EEEE
Q 033738           27 SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIF--SMVR  104 (112)
Q Consensus        27 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~--~~~~  104 (112)
                      ++.+.-||+.+++..-+.... .+...-.....+.       +++.++.|+.++.+|.++|+.+..++....+.  -+.|
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg-------lvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y  536 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGN-------LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITW  536 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTT-------EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             cceEEEEECCCCCEEEEecCC-CCCcccceEeCCC-------EEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEE
Confidence            367888898888766554422 1111111122232       44468889999999999999998887765332  2455


Q ss_pred             cCCCc
Q 033738          105 GKKGF  109 (112)
Q Consensus       105 ~~~~~  109 (112)
                      ..+|+
T Consensus       537 ~~~G~  541 (582)
T 1flg_A          537 EQDGE  541 (582)
T ss_dssp             EETTE
T ss_pred             EECCE
Confidence            56665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.25  E-value=0.012  Score=36.21  Aligned_cols=97  Identities=9%  Similarity=0.025  Sum_probs=57.9

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC-CcEEEEeCC
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD-ETIKYWDFS   85 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~   85 (112)
                      ... +++++.+..|+...  .+.|.+.+++.......+.........+++.|.+.      .++.+-... +.|..+++.
T Consensus       161 p~g-lavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g------~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          161 PGG-LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG------TIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             CCC-EEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT------EEEEEECSSSCEEEEEETT
T ss_pred             ccE-EEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC------eEEEeccCCCCEEEEEeCC
Confidence            344 78887666665554  57888888764432223333334568899998764      233344444 788888876


Q ss_pred             CCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           86 TPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        86 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      ............ ....++++|++..||
T Consensus       234 G~~~~~~~~~~~~~PnGlavd~~~~~lY  261 (386)
T 3v65_B          234 GSGRRIIADTHLFWPNGLTIDYAGRRMY  261 (386)
T ss_dssp             SCSCEEEECSSCSCEEEEEEEGGGTEEE
T ss_pred             CCCcEEEEECCCCCeeeEEEeCCCCEEE
Confidence            433322222222 678899988776654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.24  E-value=0.00063  Score=41.52  Aligned_cols=90  Identities=12%  Similarity=0.102  Sum_probs=50.1

Q ss_pred             EEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEE
Q 033738           14 AFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKT   92 (112)
Q Consensus        14 ~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~   92 (112)
                      .++|++..+++++ ++.++.||.++++....+....  .....+..+...+.    .++.++.++.++.||..+|+.+..
T Consensus       125 ~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~----~v~~~~~dg~v~a~d~~tG~~~W~  198 (369)
T 2hz6_A          125 SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKM----SHFVSNGDGLVVTVDSESGDVLWI  198 (369)
T ss_dssp             --------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCC----CEEEEETSCEEEEECTTTCCEEEE
T ss_pred             cccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccc----eEEEECCCCEEEEEECCCCcEEEE
Confidence            3456777777777 7899999998887554443211  11112222210001    234678899999999999998887


Q ss_pred             EecCCCEEE-EEEcCCCc
Q 033738           93 IDVKFPIFS-MVRGKKGF  109 (112)
Q Consensus        93 ~~~~~~v~~-~~~~~~~~  109 (112)
                      .....++.. ..++++|.
T Consensus       199 ~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          199 QNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             EECSSCEEEEEECTTSSC
T ss_pred             ecCCCceEEEEEecCCce
Confidence            776665543 35556653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.20  E-value=0.013  Score=35.54  Aligned_cols=93  Identities=11%  Similarity=0.059  Sum_probs=56.7

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC-CcEEEEeCCCCce
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD-ETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~   89 (112)
                      +++.+.+..|+...  .+.|.+.+++.......+.........+++.|.+.      .++.+.... +.|...++... .
T Consensus       121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g------~ly~td~~~~~~I~r~~~dG~-~  193 (349)
T 3v64_C          121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG------TIYWTDWGNTPRIEASSMDGS-G  193 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTT------EEEEEECSSSCEEEEEETTSC-S
T ss_pred             EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcC------eEEEeccCCCCEEEEEeCCCC-C
Confidence            78887666665554  58899998875432222333334568899998653      234454444 78888887633 3


Q ss_pred             EEEEe-cC-CCEEEEEEcCCCcEeC
Q 033738           90 LKTID-VK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        90 ~~~~~-~~-~~v~~~~~~~~~~~~~  112 (112)
                      ...+. .. .....++++|++..||
T Consensus       194 ~~~~~~~~~~~PnGla~d~~~~~lY  218 (349)
T 3v64_C          194 RRIIADTHLFWPNGLTIDYAGRRMY  218 (349)
T ss_dssp             CEESCCSSCSCEEEEEEETTTTEEE
T ss_pred             cEEEEECCCCCcceEEEeCCCCEEE
Confidence            33332 22 2678889988776654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.14  E-value=0.0095  Score=35.14  Aligned_cols=88  Identities=9%  Similarity=0.080  Sum_probs=52.2

Q ss_pred             cCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc
Q 033738            9 VSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE   88 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~   88 (112)
                      +.. +...+++..++...++.+..+|.+ ++....+......+..+...+++.       +++..   +.+..+| .+++
T Consensus       139 ~~~-~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-------l~v~t---~~l~~~d-~~g~  205 (330)
T 3hxj_A          139 YAT-PIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-------IYFGS---DKVYAIN-PDGT  205 (330)
T ss_dssp             CSC-CEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-------EEEES---SSEEEEC-TTSC
T ss_pred             eee-eEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-------EEEEe---CEEEEEC-CCCc
Confidence            344 666667775543337899999988 765555544444455566656663       22222   7788888 6666


Q ss_pred             eEEEEecCC-CEEEEEEcCCCc
Q 033738           89 LLKTIDVKF-PIFSMVRGKKGF  109 (112)
Q Consensus        89 ~~~~~~~~~-~v~~~~~~~~~~  109 (112)
                      ......... .+.++...++|.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~g~  227 (330)
T 3hxj_A          206 EKWNFYAGYWTVTRPAISEDGT  227 (330)
T ss_dssp             EEEEECCSSCCCSCCEECTTSC
T ss_pred             EEEEEccCCcceeceEECCCCe
Confidence            655554332 455555555544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.14  E-value=0.017  Score=35.77  Aligned_cols=98  Identities=9%  Similarity=-0.031  Sum_probs=59.9

Q ss_pred             CcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCC----ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTG----LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+.. ++|++.+..|+...  .+.|+.+++...    .....+.........+++.+.+.      .++++-...+.|.+
T Consensus       113 ~~~~-l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~------~lY~~d~~~~~I~~  185 (400)
T 3p5b_L          113 NVVA-LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS------NIYWTDSVLGTVSV  185 (400)
T ss_dssp             CEEE-EEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT------EEEEEETTTTEEEE
T ss_pred             cceE-EeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC------ceEEEECCCCeEEE
Confidence            4455 88888777777665  588888887642    12222222334567888887543      24556667788999


Q ss_pred             EeCCCCceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738           82 WDFSTPELLKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      .++........+... .....+++.|.+..||
T Consensus       186 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly  217 (400)
T 3p5b_L          186 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY  217 (400)
T ss_dssp             ECTTTCSEEEEEECSSCCEEEEEEETTTTEEE
T ss_pred             EeCCCCceEEEEeCCCCCcceEEEecccCeEE
Confidence            998755443333322 2677888888665554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.13  E-value=0.014  Score=34.47  Aligned_cols=93  Identities=12%  Similarity=0.045  Sum_probs=55.0

Q ss_pred             CCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738            7 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      ..+.+ +...++|...+...++.+..++. +++....+.........+...+++        .+..++.++.+..+|. +
T Consensus       215 ~~~~~-~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g--------~l~v~t~~ggl~~~d~-~  283 (330)
T 3hxj_A          215 WTVTR-PAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD--------TIYFGSYDGHLYAINP-D  283 (330)
T ss_dssp             CCCSC-CEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS--------CEEEECTTCEEEEECT-T
T ss_pred             cceec-eEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC--------eEEEecCCCCEEEECC-C
Confidence            34555 77888876665555778888874 454454444333333344455455        2335667778999995 6


Q ss_pred             CceEEEEecCC-CEEEEEEcCCCcE
Q 033738           87 PELLKTIDVKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        87 ~~~~~~~~~~~-~v~~~~~~~~~~~  110 (112)
                      ++......... .+.++...++|..
T Consensus       284 g~~~~~~~~~~~~~~~~~~d~~g~l  308 (330)
T 3hxj_A          284 GTEKWNFETGSWIIATPVIDENGTI  308 (330)
T ss_dssp             SCEEEEEECSSCCCSCCEECTTCCE
T ss_pred             CcEEEEEEcCCccccceEEcCCCEE
Confidence            77666655443 4555555566654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.04  E-value=0.035  Score=37.63  Aligned_cols=98  Identities=11%  Similarity=0.031  Sum_probs=60.1

Q ss_pred             CcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEee-ecCCcEEEEeC
Q 033738            8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA-SLDETIKYWDF   84 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~   84 (112)
                      .... +++.+.++.|+.+.  .+.|.+.+++.......+.........+++.|...      .++.+- +..+.|...++
T Consensus       472 ~P~G-LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g------~LYwtD~g~~~~I~~~~~  544 (791)
T 3m0c_C          472 APDG-LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG------FMYWTDWGTPAKIKKGGL  544 (791)
T ss_dssp             CCCE-EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT------EEEEEECSSSCEEEEEET
T ss_pred             Ccce-eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCC------CEEEecCCCCCeEEEEec
Confidence            3445 88888777777664  68999999875443333333334568999998753      133333 33377888888


Q ss_pred             CCCceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738           85 STPELLKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        85 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      ........+... .....|++.+.+..||
T Consensus       545 dG~~~~~lv~~~l~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          545 NGVDIYSLVTENIQWPNGITLDLLSGRLY  573 (791)
T ss_dssp             TSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             CCCceEEEEeCCCCCceEEEEecCCCeEE
Confidence            643333333322 2677888887766654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.04  E-value=0.0087  Score=35.42  Aligned_cols=89  Identities=4%  Similarity=-0.060  Sum_probs=57.5

Q ss_pred             EcCCCCEEEEEc--CCeEEEEeCCC-Cce--eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738           15 FSNDVKRLLVCT--SNTVSIFSTST-GLQ--ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL   89 (112)
Q Consensus        15 ~~~~~~~l~~~~--~~~v~~~~~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~   89 (112)
                      ++|+++.|+.+.  .+.|..+++.. +..  ...+.. ......+++.+++.       ++++....+.|.+++.. |+.
T Consensus       174 is~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-------l~va~~~~~~V~~~~~~-G~~  244 (306)
T 2p4o_A          174 LKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-------LYGATHIYNSVVRIAPD-RST  244 (306)
T ss_dssp             EEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-------EEEECBTTCCEEEECTT-CCE
T ss_pred             cCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-------EEEEeCCCCeEEEECCC-CCE
Confidence            478888776664  68999999864 321  111111 12335678888885       55666677889999975 655


Q ss_pred             EE--EEecC-CCEEEEEEc---CCCcEeC
Q 033738           90 LK--TIDVK-FPIFSMVRG---KKGFAVF  112 (112)
Q Consensus        90 ~~--~~~~~-~~v~~~~~~---~~~~~~~  112 (112)
                      ..  .+..+ ....+++|.   |+++.||
T Consensus       245 ~~~~~~~~~~~~p~~~a~~g~~~d~~~Ly  273 (306)
T 2p4o_A          245 TIIAQAEQGVIGSTAVAFGQTEGDCTAIY  273 (306)
T ss_dssp             EEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             EEEeecccccCCceEEEEecccCCCCEEE
Confidence            33  23333 368899998   7877665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.96  E-value=0.019  Score=33.32  Aligned_cols=77  Identities=9%  Similarity=-0.104  Sum_probs=50.7

Q ss_pred             eEEcCCCCEEEEEc-C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738           13 PAFSNDVKRLLVCT-S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~   89 (112)
                      +.|++ +.++.+.+ +  ..|+.+|+++++.+..+...... ......+.+.      .++.....++.+.++|..+.+.
T Consensus        26 L~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-fgeGi~~~~~------~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           26 LFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-FGAGIVAWRD------RLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             EEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-CEEEEEEETT------EEEEEESSSSEEEEEETTTTEE
T ss_pred             EEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-ceeEEEEeCC------EEEEEEeeCCEEEEEECCcCcE
Confidence            77775 44444444 3  59999999999887766543332 2222333332      1334556788999999999999


Q ss_pred             EEEEecCC
Q 033738           90 LKTIDVKF   97 (112)
Q Consensus        90 ~~~~~~~~   97 (112)
                      +.++....
T Consensus        98 ~~ti~~~~  105 (243)
T 3mbr_X           98 RARFRYPG  105 (243)
T ss_dssp             EEEEECSS
T ss_pred             EEEEeCCC
Confidence            98887654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.90  E-value=0.025  Score=33.76  Aligned_cols=96  Identities=11%  Similarity=-0.004  Sum_probs=57.6

Q ss_pred             cCCCeEEcCCCCEEEEE-c-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC-CcEEEEeCC
Q 033738            9 VSSPPAFSNDVKRLLVC-T-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD-ETIKYWDFS   85 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~   85 (112)
                      ... +++++.+..|+.. . .+.|.+++++.......+.........+++.|.+.      .++.+.... +.|...++.
T Consensus        79 p~g-lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g------~ly~~d~~~~~~I~~~~~d  151 (316)
T 1ijq_A           79 PDG-LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG------FMYWTDWGTPAKIKKGGLN  151 (316)
T ss_dssp             CCE-EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT------EEEEEECSSSCEEEEEETT
T ss_pred             cCE-EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC------EEEEEccCCCCeEEEEcCC
Confidence            344 7787766666555 3 68999999875432222332334568899998653      133343333 678888875


Q ss_pred             CCceEEEEec-C-CCEEEEEEcCCCcEeC
Q 033738           86 TPELLKTIDV-K-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        86 ~~~~~~~~~~-~-~~v~~~~~~~~~~~~~  112 (112)
                       |.....+.. . .....+++++++..||
T Consensus       152 -G~~~~~~~~~~~~~P~gla~d~~~~~lY  179 (316)
T 1ijq_A          152 -GVDIYSLVTENIQWPNGITLDLLSGRLY  179 (316)
T ss_dssp             -SCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             -CCCeEEEEECCCCCceEEEEeccCCEEE
Confidence             443333322 2 2678899998776664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.88  E-value=0.05  Score=36.90  Aligned_cols=97  Identities=9%  Similarity=-0.026  Sum_probs=57.8

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCCC----ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTSTG----LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      +.. +++++.+..|+...  .+.|+.+++...    .....+.........+++.+.+.      .++++-...+.|.+.
T Consensus       426 ~~g-l~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~------~LY~tD~~~~~I~v~  498 (791)
T 3m0c_C          426 VVA-LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS------NIYWTDSVLGTVSVA  498 (791)
T ss_dssp             EEE-EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT------EEEEEETTTTEEEEE
T ss_pred             eEE-EeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCC------cEEEEecCCCeEEEE
Confidence            344 77877666666554  578888887642    11222222334456788887664      255567777899999


Q ss_pred             eCCCCceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738           83 DFSTPELLKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        83 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      ++........+... .....|++.|.+..||
T Consensus       499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LY  529 (791)
T 3m0c_C          499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMY  529 (791)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             eCCCCeEEEEEeCCCCCcceEEEecCCCCEE
Confidence            98744433333322 2678888888765554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.87  E-value=0.0063  Score=40.42  Aligned_cols=97  Identities=9%  Similarity=-0.046  Sum_probs=55.6

Q ss_pred             CcCCCeEEcCCCCEEEEEc--CCeEEEEeCCC----CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTST----GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+.. ++|++.+..|+.+.  .+.|+.+++..    ......+.........+++.+.+.      .++++-...+.|.+
T Consensus       407 ~p~g-la~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g------~LY~tD~~~~~I~v  479 (699)
T 1n7d_A          407 NVVA-LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS------NIYWTDSVLGTVSV  479 (699)
T ss_dssp             TCCC-CEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSS------BCEECCTTTSCEEE
T ss_pred             ceEE-EccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCC------cEEEEeccCCeEEE
Confidence            3455 88998888887776  58899888874    221222221122234677765442      14446566788999


Q ss_pred             EeCCCCceEEEEecC-CCEEEEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDVK-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~  111 (112)
                      +++........+... .....+++.|.+..|
T Consensus       480 ~d~dg~~~~~l~~~~~~~P~giavDp~~g~l  510 (699)
T 1n7d_A          480 ADTKGVKRKTLFREQGSKPRAIVVDPVHGFM  510 (699)
T ss_dssp             EBSSSCCEEEECCCSSCCCCCEECCSSSSCC
T ss_pred             EecCCCceEEEEeCCCCCcceEEEccCCCcE
Confidence            988754333333222 245667777765544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.74  E-value=0.031  Score=35.03  Aligned_cols=95  Identities=19%  Similarity=0.215  Sum_probs=52.6

Q ss_pred             cCCCeEEcCCCCEEEEEcC----C-eEEEEeCCCCce-eeeccccCCceEEEEEec-CCCCccceeEEEEeeecCCcEEE
Q 033738            9 VSSPPAFSNDVKRLLVCTS----N-TVSIFSTSTGLQ-ISSLEGHTAPVTTVIVVP-ASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~~----~-~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      ... ++++++|+++++...    . .+...+...+.. ...+. .......++++| ++.       ++++...++.|+.
T Consensus       184 P~g-iavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~-------lyv~d~~~~~V~~  254 (433)
T 4hw6_A          184 CAD-VNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGK-------IYYTRYHHAMISS  254 (433)
T ss_dssp             EEE-EEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCC-------EEECBTTCSEEEE
T ss_pred             ccE-EEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCe-------EEEEECCCCEEEE
Confidence            445 888999884444432    1 233333222111 01111 122335678888 563       5556667789999


Q ss_pred             EeCCCCceEEEE-ecCC--CEEEEEEcCCCcEeC
Q 033738           82 WDFSTPELLKTI-DVKF--PIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~~~~~-~~~~--~v~~~~~~~~~~~~~  112 (112)
                      +|..++.....+ ....  ....++++|+|+.||
T Consensus       255 ~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY  288 (433)
T 4hw6_A          255 YDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY  288 (433)
T ss_dssp             ECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred             EECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE
Confidence            998877652322 2221  344699999998654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.74  E-value=0.012  Score=38.87  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=19.7

Q ss_pred             CEEEEEc-CCeEEEEeCCCCceeeec
Q 033738           20 KRLLVCT-SNTVSIFSTSTGLQISSL   44 (112)
Q Consensus        20 ~~l~~~~-~~~v~~~~~~~~~~~~~~   44 (112)
                      ..++.++ ++.++++|..+++.+..+
T Consensus       328 ~~l~~~~~~G~l~~lD~~tG~~l~~~  353 (677)
T 1kb0_A          328 KVILHAPKNGFFFVLDRTNGKFISAK  353 (677)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             eEEEEECCCCEEEEEECCCCCEeccc
Confidence            5667777 899999999999876544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.70  E-value=0.045  Score=33.88  Aligned_cols=94  Identities=12%  Similarity=0.044  Sum_probs=56.7

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEee-ecCCcEEEEeCCCCce
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA-SLDETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~   89 (112)
                      +++.+.+..|+...  .+.|.+.+++.......+.........+++.|.+.      .++.+- +..+.|...++.....
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g------~ly~td~~~~~~I~~~~~dG~~~  237 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG------FMYWTDWGTPAKIKKGGLNGVDI  237 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTT------EEEEEECSSSCCEEEEETTSCSC
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccC------eEEEEeCCCCCEEEEEeCCCCcc
Confidence            67777555555554  58888888875543333333334468899998653      133333 3347888888764333


Q ss_pred             EEEEecC-CCEEEEEEcCCCcEeC
Q 033738           90 LKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        90 ~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      ....... .....+++++++..||
T Consensus       238 ~~~~~~~l~~P~glavd~~~~~lY  261 (400)
T 3p5b_L          238 YSLVTENIQWPNGITLDLLSGRLY  261 (400)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEE
T ss_pred             EEEEECCCCceEEEEEEeCCCEEE
Confidence            2222322 3778889988776664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.62  E-value=0.036  Score=36.32  Aligned_cols=74  Identities=19%  Similarity=0.140  Sum_probs=42.1

Q ss_pred             CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC--CEEEEEEc
Q 033738           28 NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF--PIFSMVRG  105 (112)
Q Consensus        28 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~  105 (112)
                      +.+.-||+.+++..-..+.. .+...-.....+.       .++.++.|+.++.+|.++|+.+..++.+.  ...-+.+.
T Consensus       453 G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg-------~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~  524 (599)
T 1w6s_A          453 GQIKAYNAITGDYKWEKMER-FAVWGGTMATAGD-------LVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYT  524 (599)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTT-------EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred             CeEEEEECCCCCEEeEecCC-CCccCcceEecCC-------EEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEE
Confidence            46777777777655444311 1111111122332       34457889999999999999998887654  12223444


Q ss_pred             CCCc
Q 033738          106 KKGF  109 (112)
Q Consensus       106 ~~~~  109 (112)
                      .+|+
T Consensus       525 ~~G~  528 (599)
T 1w6s_A          525 HKGT  528 (599)
T ss_dssp             ETTE
T ss_pred             eCCE
Confidence            5554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.61  E-value=0.076  Score=35.32  Aligned_cols=78  Identities=13%  Similarity=0.078  Sum_probs=51.9

Q ss_pred             eEEcCCCCEEEEEc-CC-------------------eEEEEeCCCCceeeeccc--cC-------CceEEEEEecCCCCc
Q 033738           13 PAFSNDVKRLLVCT-SN-------------------TVSIFSTSTGLQISSLEG--HT-------APVTTVIVVPASTPA   63 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~-------------------~v~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~~   63 (112)
                      ++++|++..++.+. ++                   .|..+|.++++..-.+..  +.       .+........++.  
T Consensus       240 ~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~--  317 (689)
T 1yiq_A          240 FAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK--  317 (689)
T ss_dssp             EEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE--
T ss_pred             eeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc--
Confidence            78889888888887 54                   499999999987765543  21       1111222223441  


Q ss_pred             cceeEEEEeeecCCcEEEEeCCCCceEEEEe
Q 033738           64 TKILSYCWTASLDETIKYWDFSTPELLKTID   94 (112)
Q Consensus        64 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~   94 (112)
                       .. ..++.++.+|.++.+|.++|+.+....
T Consensus       318 -~~-~~v~~~~~~G~l~~lD~~tG~~l~~~~  346 (689)
T 1yiq_A          318 -PR-KVLMQAPKNGFFYVIDRATGELLSAKG  346 (689)
T ss_dssp             -EE-EEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             -EE-EEEEEECCCCeEEEEECCCCCEecccc
Confidence             01 145678899999999999999875443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.55  E-value=0.051  Score=32.61  Aligned_cols=93  Identities=5%  Similarity=-0.096  Sum_probs=54.7

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCcee-eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQI-SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~   89 (112)
                      ++|++.++.|+...  .+.|..++++..... ..+...-.....+++.+.+.      .++.+-...+.|.+++......
T Consensus        40 ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g------~ly~~d~~~~~I~~~~~dG~~~  113 (318)
T 3sov_A           40 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE------KLYWTDSETNRIEVSNLDGSLR  113 (318)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT------EEEEEETTTTEEEEEETTSCSC
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC------eEEEEECCCCEEEEEECCCCcE
Confidence            77888766676665  588888887755321 12222223346788886543      2455666678899998864332


Q ss_pred             EEEEecC-CCEEEEEEcCCCcEe
Q 033738           90 LKTIDVK-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        90 ~~~~~~~-~~v~~~~~~~~~~~~  111 (112)
                      ....... .....+++.|.+..+
T Consensus       114 ~~l~~~~~~~P~giavdp~~g~l  136 (318)
T 3sov_A          114 KVLFWQELDQPRAIALDPSSGFM  136 (318)
T ss_dssp             EEEECSSCSSEEEEEEEGGGTEE
T ss_pred             EEEEeCCCCCccEEEEeCCCCEE
Confidence            2222222 266777887765444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.50  E-value=0.043  Score=36.32  Aligned_cols=62  Identities=6%  Similarity=0.011  Sum_probs=43.0

Q ss_pred             CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738           28 NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        28 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~   97 (112)
                      +.|..||+.+++..-...... +.....+...+.       +++.++.|+.++.||.++|+.+..+..+.
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg-------~vf~g~~dg~l~a~d~~tG~~l~~~~~~~  499 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGN-------LVFQGTAAGQMHAYSADKGEALWQFEAQS  499 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-------EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCC-------EEEEECCcccchhhhhhcChhheEecCCC
Confidence            779999999998765554322 222223334443       45567899999999999999988886553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.43  E-value=0.0095  Score=39.60  Aligned_cols=93  Identities=12%  Similarity=-0.016  Sum_probs=50.8

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec-CCcEEEEeCCCCce
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL-DETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~   89 (112)
                      +++.+.+..|+.+.  .+.|.++++........+.........+++.|.+.   .   ++++... .+.|..+++.. ..
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g---~---ly~td~~~~~~I~~~~~dG-~~  530 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHG---F---MYWTDWGTPAKIKKGGLNG-VD  530 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSS---C---CEECCCSSSCCEEBCCSSS-CC
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCC---c---EEEcccCCCCeEEEEeCCC-CC
Confidence            67775555555553  58899998875433333332223446788888653   1   2333322 36777777653 22


Q ss_pred             EEEEe-cC-CCEEEEEEcCCCcEeC
Q 033738           90 LKTID-VK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        90 ~~~~~-~~-~~v~~~~~~~~~~~~~  112 (112)
                      ...+. .. .....|+++|++..||
T Consensus       531 ~~~l~~~~l~~PnGlavd~~~~~LY  555 (699)
T 1n7d_A          531 IYSLVTENIQWPNGITLDLLSGRLY  555 (699)
T ss_dssp             CCEESCSSCSSCCCEEECTTTCCEE
T ss_pred             eeEEEeCCCCCccEEEEeccCCEEE
Confidence            22221 11 2556788887766554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.30  E-value=0.077  Score=31.86  Aligned_cols=93  Identities=11%  Similarity=0.041  Sum_probs=55.0

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEee-ecCCcEEEEeCCCCce
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA-SLDETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~   89 (112)
                      +++.+.+..|+...  .+.|.+++++.......+.........+++.|.+.      .++.+. +..+.|...++. |..
T Consensus        84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g------~ly~td~~~~~~I~r~~~d-G~~  156 (318)
T 3sov_A           84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSG------FMYWTDWGEVPKIERAGMD-GSS  156 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGT------EEEEEECSSSCEEEEEETT-SCS
T ss_pred             EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCC------EEEEEecCCCCEEEEEEcC-CCC
Confidence            77777665555553  58899998875432222223334567899998653      133333 335778888876 333


Q ss_pred             EEEE-ecC-CCEEEEEEcCCCcEeC
Q 033738           90 LKTI-DVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        90 ~~~~-~~~-~~v~~~~~~~~~~~~~  112 (112)
                      ...+ ... .....+++++++..||
T Consensus       157 ~~~~~~~~l~~Pnglavd~~~~~lY  181 (318)
T 3sov_A          157 RFIIINSEIYWPNGLTLDYEEQKLY  181 (318)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             eEEEEECCCCCccEEEEeccCCEEE
Confidence            3333 222 2678899998776654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.26  E-value=0.13  Score=34.00  Aligned_cols=97  Identities=9%  Similarity=-0.059  Sum_probs=59.6

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      ... ++|++.+..++.+.  ++.|+.++++.......+.........+++.+.+.      .++.+-...+.|.+.++..
T Consensus        39 ~~~-l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~------~LY~tD~~~~~I~v~~~dG  111 (628)
T 4a0p_A           39 ASA-LDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK------NLYWADTGTNRIEVSKLDG  111 (628)
T ss_dssp             EEE-EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT------EEEEEETTTTEEEEEETTS
T ss_pred             eEE-EEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC------EEEEEECCCCEEEEEecCC
Confidence            345 88898877777665  68999888875433233332223456788876653      2445666678899988864


Q ss_pred             CceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738           87 PELLKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        87 ~~~~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      .......... .....+++.|....||
T Consensus       112 ~~~~~l~~~~l~~P~~iavdp~~G~lY  138 (628)
T 4a0p_A          112 QHRQVLVWKDLDSPRALALDPAEGFMY  138 (628)
T ss_dssp             TTCEEEECSSCCCEEEEEEETTTTEEE
T ss_pred             CcEEEEEeCCCCCcccEEEccCCCeEE
Confidence            4332222222 2677888888554443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.25  E-value=0.069  Score=35.09  Aligned_cols=66  Identities=15%  Similarity=0.093  Sum_probs=47.3

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCce-------------eeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQ-------------ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      +..+|||++++.++  +.++.++|.+....             ..... -.......+|.+++.       .+.+---|.
T Consensus       328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~-------aYTtlfidS  399 (638)
T 3sbq_A          328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGN-------AYTTLFIDS  399 (638)
T ss_dssp             EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSE-------EEEEETTTT
T ss_pred             eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCc-------eEeeeeecc
Confidence            78999999998887  79999999874211             12222 233456778988883       344666899


Q ss_pred             cEEEEeCCC
Q 033738           78 TIKYWDFST   86 (112)
Q Consensus        78 ~i~~~~~~~   86 (112)
                      ++..|++..
T Consensus       400 qvvkWni~~  408 (638)
T 3sbq_A          400 QVVKWNMEE  408 (638)
T ss_dssp             EEEEEEHHH
T ss_pred             eEEEEeccH
Confidence            999999864

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.22  E-value=0.081  Score=31.39  Aligned_cols=93  Identities=11%  Similarity=0.004  Sum_probs=53.3

Q ss_pred             cCCCeEEcC-CCCEEEEEc------------------CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEE
Q 033738            9 VSSPPAFSN-DVKRLLVCT------------------SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSY   69 (112)
Q Consensus         9 v~~~~~~~~-~~~~l~~~~------------------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   69 (112)
                      ... +++.+ +|+..++..                  ++.+..+|..+++... +.........+++++++.      .+
T Consensus       128 p~~-i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~------~l  199 (322)
T 2fp8_A          128 LYA-VTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL-LLKELHVPGGAEVSADSS------FV  199 (322)
T ss_dssp             EEE-EEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE-EEEEESCCCEEEECTTSS------EE
T ss_pred             cce-EEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE-eccCCccCcceEECCCCC------EE
Confidence            344 78888 887766543                  2568888876664322 211122345789999984      23


Q ss_pred             EEeeecCCcEEEEeCCCCc--eEEEE-ecCCCEEEEEEcCCCcE
Q 033738           70 CWTASLDETIKYWDFSTPE--LLKTI-DVKFPIFSMVRGKKGFA  110 (112)
Q Consensus        70 ~~~~~~d~~i~~~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~  110 (112)
                      +++....+.|+.+++....  ....+ .... ...+++.++|++
T Consensus       200 yv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l  242 (322)
T 2fp8_A          200 LVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF  242 (322)
T ss_dssp             EEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCE
T ss_pred             EEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCE
Confidence            4455667889999876421  11111 1122 555666666653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.04  E-value=0.07  Score=34.25  Aligned_cols=96  Identities=13%  Similarity=0.172  Sum_probs=56.1

Q ss_pred             cCCCeEE-------cCCCCEEEEEc-CC-------eEEEEeCCC-Ccee-----eeccccCCceEEEEEecCCCCcccee
Q 033738            9 VSSPPAF-------SNDVKRLLVCT-SN-------TVSIFSTST-GLQI-----SSLEGHTAPVTTVIVVPASTPATKIL   67 (112)
Q Consensus         9 v~~~~~~-------~~~~~~l~~~~-~~-------~v~~~~~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~   67 (112)
                      ... ++|       +++|+.|+.+. .+       .+.+++... +...     ..+... .....++.+|++.      
T Consensus       188 p~~-ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g------  259 (496)
T 3kya_A          188 IRS-IAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPING------  259 (496)
T ss_dssp             EEE-EEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTC------
T ss_pred             CcE-EEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCC------
Confidence            344 788       99999776665 22       256665333 2211     122211 2235678888543      


Q ss_pred             EEEEeeecCCcEEEEeCC-------CCce-----------EEE-Eec--CCCEEEEEEcCCCcEeC
Q 033738           68 SYCWTASLDETIKYWDFS-------TPEL-----------LKT-IDV--KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        68 ~~~~~~~~d~~i~~~~~~-------~~~~-----------~~~-~~~--~~~v~~~~~~~~~~~~~  112 (112)
                      .++++...++.|+.+|+.       ++..           ... +..  ....+.++|+|+|+.+|
T Consensus       260 ~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lY  325 (496)
T 3kya_A          260 ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAY  325 (496)
T ss_dssp             CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred             eEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEE
Confidence            245566778889999987       4543           112 222  23567899999998653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.02  E-value=0.093  Score=30.30  Aligned_cols=92  Identities=7%  Similarity=-0.072  Sum_probs=54.4

Q ss_pred             CcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCce------eeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            8 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQ------ISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~------~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      .+.. ++++|+|.+.+. .++.+...+..+...      -..+- ..-....++.+.|++.       ++++  .|+.|+
T Consensus        42 ~~~~-laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-------LYav--~dG~iy  110 (236)
T 1tl2_A           42 NFKF-LFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-------LYAV--SKDKLY  110 (236)
T ss_dssp             TCSE-EEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-------EEEE--ETTEEE
T ss_pred             ccee-EEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-------EEEe--CCCEEE
Confidence            5566 999999987666 778888777654211      11110 0111146788899984       3334  669998


Q ss_pred             EEeCCCCce------EEEEecCC--CEEEEEEcCCCcE
Q 033738           81 YWDFSTPEL------LKTIDVKF--PIFSMVRGKKGFA  110 (112)
Q Consensus        81 ~~~~~~~~~------~~~~~~~~--~v~~~~~~~~~~~  110 (112)
                      -++-.+...      -.++....  .+..+.+.|+|.+
T Consensus       111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L  148 (236)
T 1tl2_A          111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL  148 (236)
T ss_dssp             EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE
T ss_pred             EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceE
Confidence            887643211      12222222  6778888888764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.97  E-value=0.12  Score=31.22  Aligned_cols=71  Identities=13%  Similarity=0.087  Sum_probs=45.1

Q ss_pred             CCCEEEEEc-CCeEEEEeCCCCceeeecccc---------CCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738           18 DVKRLLVCT-SNTVSIFSTSTGLQISSLEGH---------TAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP   87 (112)
Q Consensus        18 ~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~   87 (112)
                      ++..++.++ ++.+..+|.++++........         ...+...-...++        .++.++.++.+..+|..+|
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~v~v~~~~g~l~a~d~~tG  123 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGG--------HVYIGSEKAQVYALNTSDG  123 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETT--------EEEEEETTSEEEEEETTTC
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCC--------EEEEEcCCCEEEEEECCCC
Confidence            345666666 789999999988766544431         1222221112233        3446777899999999999


Q ss_pred             ceEEEEecC
Q 033738           88 ELLKTIDVK   96 (112)
Q Consensus        88 ~~~~~~~~~   96 (112)
                      +.+......
T Consensus       124 ~~~W~~~~~  132 (376)
T 3q7m_A          124 TVAWQTKVA  132 (376)
T ss_dssp             CEEEEEECS
T ss_pred             CEEEEEeCC
Confidence            877665543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.93  E-value=0.19  Score=33.12  Aligned_cols=97  Identities=5%  Similarity=-0.084  Sum_probs=57.2

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCce-eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQ-ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      ... +++++.+..|+.+.  .+.|..++++.... ...+.........+++.+.+.      .++.+-...+.|.+.+..
T Consensus        42 ~~~-ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~------~ly~~d~~~~~I~v~~~d  114 (619)
T 3s94_A           42 AAA-VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE------KLYWTDSETNRIEVSNLD  114 (619)
T ss_dssp             EEE-EEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT------EEEEEETTTTEEEEEETT
T ss_pred             eEE-EEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC------EEEEEeCCCCEEEEEECC
Confidence            344 78888777777665  58888888765421 222332324567899988654      255566777899999987


Q ss_pred             CCceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738           86 TPELLKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        86 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      ........... .....+++.|.+..+|
T Consensus       115 G~~~~~l~~~~l~~P~~Iavdp~~g~ly  142 (619)
T 3s94_A          115 GSLRKVLFWQELDQPRAIALDPSSGFMY  142 (619)
T ss_dssp             SCSCEEEECSSCSCCCCEEEETTTTEEE
T ss_pred             CCCEEEEEeCCCCCCceEEEecCCCeEE
Confidence            44332222222 2566777877655443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.86  E-value=0.059  Score=32.59  Aligned_cols=27  Identities=4%  Similarity=0.074  Sum_probs=21.4

Q ss_pred             EEEeeecCCcEEEEeCCCCceEEEEec
Q 033738           69 YCWTASLDETIKYWDFSTPELLKTIDV   95 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~   95 (112)
                      .++.++.++.++.+|..+|+.+.....
T Consensus       320 ~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          320 NLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            344677789999999999988777665

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.81  E-value=0.15  Score=31.16  Aligned_cols=101  Identities=11%  Similarity=0.075  Sum_probs=56.2

Q ss_pred             cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCce--eeec----cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQ--ISSL----EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~--~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      -.. +++.|||+.+++-. .+.|++++...++.  +..+    ....+....++++|+-..+..+. ...+...+..|.-
T Consensus        34 P~~-ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lY-v~yt~~~~~~v~R  111 (347)
T 3das_A           34 PWG-LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVY-AYFTSASDNRIVR  111 (347)
T ss_dssp             EEE-EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEE-EEEECSSSEEEEE
T ss_pred             ceE-EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEE-EEEecCCCCEEEE
Confidence            344 88999999888887 79999998665542  1112    12345678999999621001122 1122223445555


Q ss_pred             EeCCCC----------ceE-EEEec--CCCEEEEEEcCCCcEe
Q 033738           82 WDFSTP----------ELL-KTIDV--KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~----------~~~-~~~~~--~~~v~~~~~~~~~~~~  111 (112)
                      |.+..+          +.+ ..+..  ......+.|.|+|.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Ly  154 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLY  154 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEE
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEE
Confidence            554431          111 11221  1145678999998643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.72  E-value=0.17  Score=30.89  Aligned_cols=94  Identities=15%  Similarity=0.050  Sum_probs=53.0

Q ss_pred             CCCeEEcCCCCEEEEEcCCeEEEEeCCCCc-eeeec---cccCCceEEEEEecC---CCCccceeEEEEeee---cC---
Q 033738           10 SSPPAFSNDVKRLLVCTSNTVSIFSTSTGL-QISSL---EGHTAPVTTVIVVPA---STPATKILSYCWTAS---LD---   76 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~---~d---   76 (112)
                      .. ++|.|+|+.+++-.++.|++++. .++ .+..+   .........++++|+   +.   .   ++++..   .+   
T Consensus        32 ~~-ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g---~---lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           32 WS-IAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKS---W---VYLYASYFAEGGHI  103 (354)
T ss_dssp             EE-EEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSC---E---EEEEEEEECGGGCE
T ss_pred             eE-EEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCC---E---EEEEEeccCCCCCc
Confidence            44 88999998666665899998873 343 22221   122345789999997   32   1   222322   12   


Q ss_pred             -CcEEEEeCCCC--c-----eE-EEEecC--CCEEEEEEcCCCcEe
Q 033738           77 -ETIKYWDFSTP--E-----LL-KTIDVK--FPIFSMVRGKKGFAV  111 (112)
Q Consensus        77 -~~i~~~~~~~~--~-----~~-~~~~~~--~~v~~~~~~~~~~~~  111 (112)
                       ..|..++...+  .     .+ ..+...  .....++|.|+|...
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Ly  149 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLY  149 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEE
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEE
Confidence             45666766543  1     11 112211  134678999998643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.27  E-value=0.26  Score=30.11  Aligned_cols=94  Identities=10%  Similarity=0.022  Sum_probs=59.6

Q ss_pred             CCCeEE---cCCCCEEEEEc--------------CCeEEEEeCC---CCceeeecc--c-----------cCCceEEEEE
Q 033738           10 SSPPAF---SNDVKRLLVCT--------------SNTVSIFSTS---TGLQISSLE--G-----------HTAPVTTVIV   56 (112)
Q Consensus        10 ~~~~~~---~~~~~~l~~~~--------------~~~v~~~~~~---~~~~~~~~~--~-----------~~~~v~~~~~   56 (112)
                      .. +.|   .|+++++++..              +..+..+|+.   +++......  .           .......++.
T Consensus        66 sG-l~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           66 SG-LSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EE-EEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eE-EEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            45 788   68877776432              3668899998   665443222  1           1124678999


Q ss_pred             ecCCCCccceeEEEEeeecC-CcEEEEeCCCCceEEEEecCC-------CEEEEEEcCCCcEeC
Q 033738           57 VPASTPATKILSYCWTASLD-ETIKYWDFSTPELLKTIDVKF-------PIFSMVRGKKGFAVF  112 (112)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~  112 (112)
                      .++++       .+++++.. +.|...+... +.+..+....       ..+.++++|+|+.|+
T Consensus       145 D~~Gn-------aYVt~s~~~~~I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Li  200 (334)
T 2p9w_A          145 DRDGN-------SYVAFALGMPAIARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLI  200 (334)
T ss_dssp             CTTSC-------EEEEEEESSCEEEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEE
T ss_pred             CCCCC-------EEEeCCCCCCeEEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEE
Confidence            99996       56677777 7777777653 3333322111       356889999998663

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.24  E-value=0.37  Score=31.80  Aligned_cols=92  Identities=8%  Similarity=-0.080  Sum_probs=56.2

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL   90 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~   90 (112)
                      +++++.+..|+.+.  .+.|+.++++.......+...-.....+++...+.      .++.+-...+.|.+.++.... .
T Consensus       354 ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~------~lY~tD~~~~~I~v~~~~G~~-~  426 (619)
T 3s94_A          354 IDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVAR------NLYWTDTGTDRIEVTRLNGTM-R  426 (619)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT------EEEEEETTTTEEEEEETTSCS-C
T ss_pred             EEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccC------cEEEEeCCCCcEEEEeCCCCe-E
Confidence            67777666666554  58888888765432223332223456888876543      255566677889998887443 3


Q ss_pred             EEEec-C-CCEEEEEEcCCCcEe
Q 033738           91 KTIDV-K-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        91 ~~~~~-~-~~v~~~~~~~~~~~~  111 (112)
                      ..+.. . .....+++.|....+
T Consensus       427 ~~l~~~~l~~P~~iavdp~~G~l  449 (619)
T 3s94_A          427 KILISEDLEEPRAIVLDPMVGYM  449 (619)
T ss_dssp             EEEECTTCCSEEEEEEETTTTEE
T ss_pred             EEEEECCCCCeeeEEEEcCCCcE
Confidence            33332 2 267888888864433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.22  E-value=0.26  Score=29.95  Aligned_cols=92  Identities=12%  Similarity=0.113  Sum_probs=52.9

Q ss_pred             CCCeEEcCCCCEEEEEcCCeEEEEeCCCCce--eeec---cccCCceEEEEEecC---CCCccceeEEEEeeecC-----
Q 033738           10 SSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQ--ISSL---EGHTAPVTTVIVVPA---STPATKILSYCWTASLD-----   76 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~--~~~~---~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~d-----   76 (112)
                      .. +++.|+|+.+++-..+.|++++  .++.  +..+   .........++++|+   +.    .  ++++....     
T Consensus        34 ~~-ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g----~--lYv~~~~~~~~~~  104 (352)
T 2ism_A           34 WA-LAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEP----Y--VYAYRTVAEGGLR  104 (352)
T ss_dssp             EE-EEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSC----E--EEEEEEECTTSSE
T ss_pred             eE-EEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCC----E--EEEEEecCCCCCc
Confidence            44 8899999966665589999988  3321  1111   122345689999998   32    1  22333322     


Q ss_pred             CcEEEEeCCCCc-----eE-EEEec--C--CCEEEEEEcCCCcE
Q 033738           77 ETIKYWDFSTPE-----LL-KTIDV--K--FPIFSMVRGKKGFA  110 (112)
Q Consensus        77 ~~i~~~~~~~~~-----~~-~~~~~--~--~~v~~~~~~~~~~~  110 (112)
                      ..|..++...+.     .+ ..+..  .  .....++|.|+|..
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~L  148 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGML  148 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCE
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCE
Confidence            567777766431     11 11321  1  13467899999854

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.03  E-value=0.27  Score=29.03  Aligned_cols=72  Identities=10%  Similarity=-0.038  Sum_probs=46.0

Q ss_pred             cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec-C-CcEEEEeCC
Q 033738            9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL-D-ETIKYWDFS   85 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-d-~~i~~~~~~   85 (112)
                      ... ++|+++|+.+++.. ++.|..+|.+.. ....+. .......+++.+++.       ++++... + ..+..+|..
T Consensus        34 peg-ia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~-------l~vad~~~~~~~v~~~d~~  103 (306)
T 2p4o_A           34 LEN-LASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGD-------LVATGWNADSIPVVSLVKS  103 (306)
T ss_dssp             EEE-EEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSC-------EEEEEECTTSCEEEEEECT
T ss_pred             cce-EEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCc-------EEEEeccCCcceEEEEcCC
Confidence            344 78999998666665 789999997743 333332 234578899999984       3334433 2 246667777


Q ss_pred             CCceE
Q 033738           86 TPELL   90 (112)
Q Consensus        86 ~~~~~   90 (112)
                      +++..
T Consensus       104 ~g~~~  108 (306)
T 2p4o_A          104 DGTVE  108 (306)
T ss_dssp             TSCEE
T ss_pred             CCeEE
Confidence            77653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.80  E-value=0.52  Score=31.20  Aligned_cols=97  Identities=10%  Similarity=-0.015  Sum_probs=58.0

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEee-ecCCcEEEEeCC
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA-SLDETIKYWDFS   85 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~   85 (112)
                      ... +++.+.+..|+.+.  .+.|.+.+++.......+...-.....+++.|...      .++.+- +..+.|...++.
T Consensus        82 P~G-lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G------~lY~tD~g~~~~I~r~~~d  154 (628)
T 4a0p_A           82 PEG-MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEG------FMYWTEWGGKPKIDRAAMD  154 (628)
T ss_dssp             CCE-EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTT------EEEEEECSSSCEEEEEETT
T ss_pred             cce-EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCC------eEEEeCCCCCCEEEEEeCC
Confidence            444 77877766666654  58899999875432222223334457999998543      123333 335678777776


Q ss_pred             CCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           86 TPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      ..........-.....+++.+++..||
T Consensus       155 G~~~~~l~~~~~~P~GlalD~~~~~LY  181 (628)
T 4a0p_A          155 GSERTTLVPNVGRANGLTIDYAKRRLY  181 (628)
T ss_dssp             SCSCEEEECSCSSEEEEEEETTTTEEE
T ss_pred             CCceEEEECCCCCcceEEEccccCEEE
Confidence            443333333233778888888776654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=94.69  E-value=0.39  Score=29.32  Aligned_cols=99  Identities=3%  Similarity=0.116  Sum_probs=61.9

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceee-eccc----cCC--ceEEEEE---ecCCCCccceeEEEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQIS-SLEG----HTA--PVTTVIV---VPASTPATKILSYCW   71 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~-~~~~----~~~--~v~~~~~---~~~~~~~~~~~~~~~   71 (112)
                      ....+-.+ ++|++.+..+..++  .+.|..|+...+.... .+..    ...  ....+.|   .|+++       +++
T Consensus        10 ~~~~yPE~-~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr-------L~v   81 (334)
T 2p9w_A           10 VKNLTPED-TIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR-------LFA   81 (334)
T ss_dssp             CTTCCCSC-EEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE-------EEE
T ss_pred             CcccCCcC-ccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc-------EEE
Confidence            33445555 99998777777776  7999999987553222 2221    111  3468888   57763       222


Q ss_pred             eee-------------cCCcEEEEeCC---CCceEEEEecC------------C--CEEEEEEcCCCcE
Q 033738           72 TAS-------------LDETIKYWDFS---TPELLKTIDVK------------F--PIFSMVRGKKGFA  110 (112)
Q Consensus        72 ~~~-------------~d~~i~~~~~~---~~~~~~~~~~~------------~--~v~~~~~~~~~~~  110 (112)
                      ...             .+..+..+|+.   +++.+......            .  ....++..++|+.
T Consensus        82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna  150 (334)
T 2p9w_A           82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS  150 (334)
T ss_dssp             EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE
T ss_pred             EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE
Confidence            222             25779999998   77766555421            1  4777888888763

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.69  E-value=0.44  Score=29.86  Aligned_cols=70  Identities=7%  Similarity=-0.049  Sum_probs=45.4

Q ss_pred             cCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCCceeeeccc-cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            9 VSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQISSLEG-HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         9 v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      ... ++++| +|..+++-. ++.|..++...+........ .......++++|+++      .++++....+.|+.++..
T Consensus       228 p~g-iavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~------~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          228 CNG-AETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN------YAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CCC-EEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS------EEEEEETTTTEEEEEEEE
T ss_pred             ceE-EEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC------EEEEEECCCCEEEEEeCC
Confidence            345 88999 566555554 68999999886643222221 123457899999985      234466667888887754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.68  E-value=0.33  Score=31.99  Aligned_cols=71  Identities=15%  Similarity=0.131  Sum_probs=42.7

Q ss_pred             eEEcC-CCCEEEEEc-CC-----------eEEEEeCCCCcee--eeccc-cCCceEEEEEecCCCCccceeEEEEeee-c
Q 033738           13 PAFSN-DVKRLLVCT-SN-----------TVSIFSTSTGLQI--SSLEG-HTAPVTTVIVVPASTPATKILSYCWTAS-L   75 (112)
Q Consensus        13 ~~~~~-~~~~l~~~~-~~-----------~v~~~~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~   75 (112)
                      .++.+ +++.++.|+ +.           .+.+||..+.+..  ..... +.......++..++.       +++.++ .
T Consensus       191 ~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-------lyv~GG~~  263 (656)
T 1k3i_A          191 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-------IVVTGGND  263 (656)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-------EEEECSSS
T ss_pred             EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-------EEEeCCCC
Confidence            56667 788888775 21           5889998776422  12211 222223456667774       555666 4


Q ss_pred             CCcEEEEeCCCCceE
Q 033738           76 DETIKYWDFSTPELL   90 (112)
Q Consensus        76 d~~i~~~~~~~~~~~   90 (112)
                      +..+.+||..+....
T Consensus       264 ~~~v~~yd~~t~~W~  278 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWI  278 (656)
T ss_dssp             TTCEEEEEGGGTEEE
T ss_pred             CCceEEecCcCCcee
Confidence            568999998876543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.59  E-value=0.49  Score=29.98  Aligned_cols=50  Identities=8%  Similarity=0.022  Sum_probs=33.3

Q ss_pred             cCCCeEEcCCCCEEEEEcC-CeEEEEeCCCCcee--eeccc------cCCceEEEEEecC
Q 033738            9 VSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQI--SSLEG------HTAPVTTVIVVPA   59 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~~-~~v~~~~~~~~~~~--~~~~~------~~~~v~~~~~~~~   59 (112)
                      ... ++|.|+|+.+++-.. +.|+.++..+++..  ..+..      ..+....++++|+
T Consensus        29 P~~-~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           29 PHA-LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             EEE-EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             ceE-EEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            344 899999998887775 57888876544322  22221      2455679999995

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=94.44  E-value=0.41  Score=31.20  Aligned_cols=27  Identities=15%  Similarity=0.069  Sum_probs=19.7

Q ss_pred             CCC---EEEEEc-CCeEEEEeCCCCceeeec
Q 033738           18 DVK---RLLVCT-SNTVSIFSTSTGLQISSL   44 (112)
Q Consensus        18 ~~~---~l~~~~-~~~v~~~~~~~~~~~~~~   44 (112)
                      +|+   .++.++ ++.+..+|..+++.+...
T Consensus       312 ~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~  342 (571)
T 2ad6_A          312 NGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             TTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence            563   455666 799999999988766443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=94.36  E-value=0.4  Score=28.02  Aligned_cols=61  Identities=13%  Similarity=0.082  Sum_probs=44.9

Q ss_pred             eccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC--CCEEEEEEcCCCcE
Q 033738           43 SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK--FPIFSMVRGKKGFA  110 (112)
Q Consensus        43 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~  110 (112)
                      .+.+-...+..+++.|++.      .+++....++.|...|.. ++.+..+...  .....+++.+++.+
T Consensus        21 ~l~g~~~~lSGla~~~~~~------~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~   83 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSN------TLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQF   83 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTT------EEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEE
T ss_pred             ECCCcccCcceeEEeCCCC------EEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEE
Confidence            4445556789999999764      345567778899999988 8888877543  37888888877765

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.81  E-value=0.63  Score=28.31  Aligned_cols=46  Identities=15%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             eEEcCCCC-EEEEEcCCeEEEEeCCCCcee---eec----cccCCceEEEEEecC
Q 033738           13 PAFSNDVK-RLLVCTSNTVSIFSTSTGLQI---SSL----EGHTAPVTTVIVVPA   59 (112)
Q Consensus        13 ~~~~~~~~-~l~~~~~~~v~~~~~~~~~~~---~~~----~~~~~~v~~~~~~~~   59 (112)
                      +++.|+|+ .+++-..+.|++++.. +...   ..+    ....+....++++|+
T Consensus        23 i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pd   76 (353)
T 2g8s_A           23 LAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPD   76 (353)
T ss_dssp             EEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred             EEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCC
Confidence            88999999 6665558999998854 3211   111    122345688999996

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.80  E-value=0.52  Score=28.99  Aligned_cols=51  Identities=14%  Similarity=0.229  Sum_probs=33.9

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCC-Cce--eeeccccCCceEEEEEec-CCC
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTST-GLQ--ISSLEGHTAPVTTVIVVP-AST   61 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~   61 (112)
                      -+. ++|+||++.++.+.  .+.|..|+++. +..  .+.+ ...+..-.+++.+ ++.
T Consensus       223 pNG-ia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~  279 (355)
T 3sre_A          223 ANG-INISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD  279 (355)
T ss_dssp             EEE-EEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC
T ss_pred             cCc-ceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc
Confidence            345 89999999888775  68999999863 321  1223 2234456788888 474

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.56  E-value=0.64  Score=29.99  Aligned_cols=68  Identities=7%  Similarity=0.031  Sum_probs=43.1

Q ss_pred             CCCeEEcCCCCEEEEE-c-CCeEEEEeCC-------CCce-----------eee-cc-ccCCceEEEEEecCCCCcccee
Q 033738           10 SSPPAFSNDVKRLLVC-T-SNTVSIFSTS-------TGLQ-----------ISS-LE-GHTAPVTTVIVVPASTPATKIL   67 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~-~-~~~v~~~~~~-------~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~~~~~~   67 (112)
                      .. ++++|++..|+.+ . ++.|..+|++       ++..           ... +. ........++++|++.      
T Consensus       250 ~g-iavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~------  322 (496)
T 3kya_A          250 NG-ATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGK------  322 (496)
T ss_dssp             CC-EEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSS------
T ss_pred             eE-EEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCC------
Confidence            44 7889965555544 4 6889999987       4432           111 11 1223357899999995      


Q ss_pred             EEEEeeecCCcEEEEeC
Q 033738           68 SYCWTASLDETIKYWDF   84 (112)
Q Consensus        68 ~~~~~~~~d~~i~~~~~   84 (112)
                      .++++-...+.|+.++.
T Consensus       323 ~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          323 YAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEEEEETTTTEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEec
Confidence            23456667788888654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=93.46  E-value=1.1  Score=29.85  Aligned_cols=79  Identities=13%  Similarity=0.069  Sum_probs=52.5

Q ss_pred             CeEEcCCCCEEEEEc-CC-------------------eEEEEeCCCCceeeeccc--cC-------CceEEEEEecCCCC
Q 033738           12 PPAFSNDVKRLLVCT-SN-------------------TVSIFSTSTGLQISSLEG--HT-------APVTTVIVVPASTP   62 (112)
Q Consensus        12 ~~~~~~~~~~l~~~~-~~-------------------~v~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~   62 (112)
                      +++++|++..++.+. ++                   .|..+|.++++..-.+..  +.       .+.....+..++. 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~-  312 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK-  312 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE-
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc-
Confidence            378888888888776 54                   489999999987755543  21       2222223333552 


Q ss_pred             ccceeEEEEeeecCCcEEEEeCCCCceEEEEe
Q 033738           63 ATKILSYCWTASLDETIKYWDFSTPELLKTID   94 (112)
Q Consensus        63 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~   94 (112)
                        .. ..++.++.+|.++++|..+|+.+...+
T Consensus       313 --~~-~~v~~~~~~G~l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          313 --PR-KVLMQAPKNGFFYVLDRTNGKLISAEK  341 (668)
T ss_dssp             --EE-EEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             --EE-EEEEEECCCCEEEEEECCCCCEecccc
Confidence              11 145688899999999999999875544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=93.29  E-value=1.1  Score=29.53  Aligned_cols=77  Identities=10%  Similarity=-0.016  Sum_probs=49.5

Q ss_pred             eEEcCCCCEEEEEc-C----------------CeEEEEeCCCCceeeeccc--cC--------CceEEEEEe-cCCCCcc
Q 033738           13 PAFSNDVKRLLVCT-S----------------NTVSIFSTSTGLQISSLEG--HT--------APVTTVIVV-PASTPAT   64 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~----------------~~v~~~~~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~~~~   64 (112)
                      +++.++...++.+. +                +.|.-+|.++++..-.+..  |.        .++. +... .++.   
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~---  321 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGK---  321 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSC---
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCc---
Confidence            56777777777765 4                3789999999987655442  21        1111 2222 3442   


Q ss_pred             ceeEEEEeeecCCcEEEEeCCCCceEEEEe
Q 033738           65 KILSYCWTASLDETIKYWDFSTPELLKTID   94 (112)
Q Consensus        65 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~   94 (112)
                      .. ..++.++.++.++.+|.++|+.+....
T Consensus       322 ~~-~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          322 AR-KLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EE-EEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EE-EEEEEECCCcEEEEEECCCCCEeeccc
Confidence            11 144567889999999999999887665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=93.20  E-value=0.95  Score=28.45  Aligned_cols=69  Identities=12%  Similarity=0.017  Sum_probs=44.1

Q ss_pred             CCCeEEcC-CCCEEEEEc-CCeEEEEeCCCCceeeec-cc-cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738           10 SSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQISSL-EG-HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus        10 ~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      .. ++++| +|.+.++-. ++.|+.++..++.....+ .. ....-..++++|++.      .++++-...+.|+.+++.
T Consensus       231 ~g-iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~------~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          231 KT-CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD------WAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CC-CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS------EEEEEETTTTEEEEEEBC
T ss_pred             CE-EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC------EEEEEeCCCCEEEEEeCC
Confidence            44 88898 555554444 689999998866542222 11 112234699999984      244566677889998765

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.08  E-value=0.68  Score=27.67  Aligned_cols=86  Identities=6%  Similarity=-0.017  Sum_probs=46.9

Q ss_pred             eEEcCCCCEEEEEc-----CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738           13 PAFSNDVKRLLVCT-----SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP   87 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~   87 (112)
                      ..++++++.|+...     ...|...+++... ...+..+..    .++++++.      .++.+......|+..++..+
T Consensus       109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~------~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDR------YFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETT------EEEEECTTTCCEEEEETTTT
T ss_pred             cEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECC------EEEEEeCCCceEEEEECCCC
Confidence            46788888887653     3567777776433 344433322    34566664      12334335678888887765


Q ss_pred             ceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           88 ELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        88 ~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      .....+.  ..... .+.|++.+||
T Consensus       178 ~~~~l~~--~~~~~-~~~P~g~~iy  199 (302)
T 3s25_A          178 SEALFYD--CNCYK-PVVLDDTNVY  199 (302)
T ss_dssp             EEEEEEC--SCEEE-EEEEETTEEE
T ss_pred             CEEEEeC--CCccc-eeeecCCEEE
Confidence            5433332  22222 2447776654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.96  E-value=0.88  Score=31.72  Aligned_cols=31  Identities=13%  Similarity=0.206  Sum_probs=25.0

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeee
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS   43 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~   43 (112)
                      +...++..++.+-+ |+++|+|++.+++++..
T Consensus       241 ~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t  272 (950)
T 4gq2_M          241 MIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  272 (950)
T ss_dssp             EEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             EeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence            55666778888888 99999999998876544

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.65  E-value=0.57  Score=32.62  Aligned_cols=37  Identities=27%  Similarity=0.357  Sum_probs=29.0

Q ss_pred             eEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEe
Q 033738           51 VTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID   94 (112)
Q Consensus        51 v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~   94 (112)
                      +.+++..++..       ++.+-+.|+++|+|++.++.++.+..
T Consensus       238 ~~~~~~~~~~~-------~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          238 IISMIFLSTYN-------VLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             EEEEEEETTTT-------EEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             EEEEeecCCCc-------EEEEEECCCEEEEEECCCCCeEeeec
Confidence            45566666653       67799999999999999999887754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=90.94  E-value=2.1  Score=27.38  Aligned_cols=47  Identities=13%  Similarity=0.210  Sum_probs=30.0

Q ss_pred             eEEcCCCC--EEEEEcCCeEEEEeCCCCc---eeeecc---------ccCCceEEEEEecC
Q 033738           13 PAFSNDVK--RLLVCTSNTVSIFSTSTGL---QISSLE---------GHTAPVTTVIVVPA   59 (112)
Q Consensus        13 ~~~~~~~~--~l~~~~~~~v~~~~~~~~~---~~~~~~---------~~~~~v~~~~~~~~   59 (112)
                      +++.|||.  .+++-..+.|++++.....   .+..+.         ..+.....++++|+
T Consensus        19 ~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           19 ALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             EECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             EEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            78899985  6666558999999754221   111111         11356788999997

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=89.14  E-value=3.5  Score=27.37  Aligned_cols=56  Identities=11%  Similarity=-0.005  Sum_probs=37.8

Q ss_pred             eEEEEEecCCCCccceeEEEEeeec-----------CCcEEEEeCCCCceEEEEecC--CCEEEEEEcCCCcEeC
Q 033738           51 VTTVIVVPASTPATKILSYCWTASL-----------DETIKYWDFSTPELLKTIDVK--FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        51 v~~~~~~~~~~~~~~~~~~~~~~~~-----------d~~i~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~  112 (112)
                      ...+.+.+++.      .++.+-..           ...+..++..+|+....+..+  ..++.++|+||++.||
T Consensus       478 PDnL~fd~~G~------LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLf  546 (592)
T 4a9v_A          478 PDGLGFDKAGR------LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF  546 (592)
T ss_dssp             EEEEEECTTCC------EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred             CCceEECCCCC------EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEE
Confidence            45788999885      23434432           125666677778766655543  3789999999999876

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.02  E-value=1.1  Score=31.85  Aligned_cols=35  Identities=14%  Similarity=0.198  Sum_probs=27.1

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeee
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS   43 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~   43 (112)
                      .+.+ +...++..++++-+ |+++|+|++.+++++..
T Consensus       239 ~~vs-~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t  274 (1139)
T 4fhn_B          239 TIIS-MIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  274 (1139)
T ss_dssp             CBSC-CEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred             eeEE-eeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence            3444 66677888888888 99999999998865543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.98  E-value=0.73  Score=32.68  Aligned_cols=26  Identities=35%  Similarity=0.365  Sum_probs=23.0

Q ss_pred             EEEeeecCCcEEEEeCCCCceEEEEe
Q 033738           69 YCWTASLDETIKYWDFSTPELLKTID   94 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~~~~~   94 (112)
                      ++++-+.|+++|+|++.++.++.+..
T Consensus       251 ~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          251 VLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             EEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCCeEEeec
Confidence            66789999999999999999987765

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=88.91  E-value=2.5  Score=25.28  Aligned_cols=65  Identities=9%  Similarity=0.076  Sum_probs=34.4

Q ss_pred             EEcCCCCEEEEEc--C-------------CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEe--eecC
Q 033738           14 AFSNDVKRLLVCT--S-------------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT--ASLD   76 (112)
Q Consensus        14 ~~~~~~~~l~~~~--~-------------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~d   76 (112)
                      -++++|..|+...  +             ..|+..+++..+ ...+...  .  ...+++++.   ++.  +..  ....
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~-~~~l~~~--~--~~~~s~~g~---~Iy--~~~~~~~~~  128 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG-STVLDPD--P--CIYASLIGN---YIY--YLHYDTQTA  128 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC-CEEEECS--C--EEEEEEETT---EEE--EEEESSSSC
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc-ceEeecC--C--ccEEEEeCC---EEE--EEeecCCCC
Confidence            4678888888775  2             256777776554 2233221  1  235677774   222  222  1344


Q ss_pred             CcEEEEeCCCCc
Q 033738           77 ETIKYWDFSTPE   88 (112)
Q Consensus        77 ~~i~~~~~~~~~   88 (112)
                      ..|+..++....
T Consensus       129 ~~Iy~~~~dGs~  140 (302)
T 3s25_A          129 TSLYRIRIDGEE  140 (302)
T ss_dssp             EEEEEEETTSCC
T ss_pred             ceEEEEECCCCC
Confidence            566666776433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=88.67  E-value=2.9  Score=25.76  Aligned_cols=92  Identities=10%  Similarity=0.048  Sum_probs=52.5

Q ss_pred             cCCCeEEcCCCCEEEEEc----C--------------CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEE
Q 033738            9 VSSPPAFSNDVKRLLVCT----S--------------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYC   70 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~----~--------------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   70 (112)
                      ..+ +.+.++|.+.++..    |              +.+..++.  ++ ...+...-...+.++|+|+++      .++
T Consensus       167 pND-~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~------~lY  236 (355)
T 3sre_A          167 VND-IVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGK------YVY  236 (355)
T ss_dssp             EEE-EEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSS------EEE
T ss_pred             Cce-EEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCC------EEE
Confidence            445 77778887666543    1              33444443  32 222222233457899999986      344


Q ss_pred             EeeecCCcEEEEeCCC-Cce--EEEEecCCCEEEEEEcC-CCcE
Q 033738           71 WTASLDETIKYWDFST-PEL--LKTIDVKFPIFSMVRGK-KGFA  110 (112)
Q Consensus        71 ~~~~~d~~i~~~~~~~-~~~--~~~~~~~~~v~~~~~~~-~~~~  110 (112)
                      ++-+..+.|+.|++.. +..  ...+......-.++..+ +|++
T Consensus       237 vadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          237 IAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL  280 (355)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             EEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcE
Confidence            5666778999999863 332  22333333556667776 4654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=88.12  E-value=4.2  Score=27.00  Aligned_cols=55  Identities=11%  Similarity=0.017  Sum_probs=35.7

Q ss_pred             EEEEEecCCCCccceeEEEEeeec-----------CCcEEEEeCCCCceEEEEecCC--CEEEEEEcCCCcEeC
Q 033738           52 TTVIVVPASTPATKILSYCWTASL-----------DETIKYWDFSTPELLKTIDVKF--PIFSMVRGKKGFAVF  112 (112)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~-----------d~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~  112 (112)
                      -.++|+|.+.      .++.+-+.           +..+...+..+++..+.+..+.  .+..++|+||++.+|
T Consensus       479 DNL~fd~~G~------LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlf  546 (592)
T 3zwu_A          479 DGLGFDKAGR------LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF  546 (592)
T ss_dssp             EEEEECTTCC------EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred             cceEECCCCC------EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEE
Confidence            5788999985      13333322           1234455666677665555543  899999999998875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=86.53  E-value=5.7  Score=26.87  Aligned_cols=95  Identities=8%  Similarity=0.068  Sum_probs=55.4

Q ss_pred             CcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccc--------cCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            8 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEG--------HTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      .|.+ +...++|+.-+...++-+..|+..++........        ....|.++...+++.       .+..++.++-+
T Consensus       358 ~V~~-i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-------~lWigt~~~Gl  429 (795)
T 4a2l_A          358 VVSC-IVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKS-------LVYIGTHAGGL  429 (795)
T ss_dssp             SEEE-EEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTT-------EEEEEETTTEE
T ss_pred             eeEE-EEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCC-------EEEEEeCcCce
Confidence            3554 6666777655544466788888776542221111        134577887777662       23456666678


Q ss_pred             EEEeCCCCceEEEEe----c-CCCEEEEEEcCCCcE
Q 033738           80 KYWDFSTPELLKTID----V-KFPIFSMVRGKKGFA  110 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~----~-~~~v~~~~~~~~~~~  110 (112)
                      ..+|..+++......    . ...|.++...++|..
T Consensus       430 ~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l  465 (795)
T 4a2l_A          430 SILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL  465 (795)
T ss_dssp             EEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE
T ss_pred             eEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE
Confidence            999988765432221    1 126777777766654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=86.50  E-value=3.7  Score=24.58  Aligned_cols=93  Identities=6%  Similarity=-0.013  Sum_probs=48.9

Q ss_pred             CCcCCCeEEcCCCCEEEEEcCCeEEE-EeC--CCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738            7 SYVSSPPAFSNDVKRLLVCTSNTVSI-FST--STGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD   83 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~~~~v~~-~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~   83 (112)
                      ..+.. +.+.+++..++.+.++.+.. .|-  .+.+.+.  ......+..+.+.+++.       ++ ..+.++.+++.+
T Consensus       163 ~~~~~-~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~-------~~-~~~~~G~~~~s~  231 (327)
T 2xbg_A          163 GVMRN-LNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGR-------LW-MIVNGGKIAFSD  231 (327)
T ss_dssp             CCEEE-EEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSC-------EE-EEETTTEEEEEE
T ss_pred             cceEE-EEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCC-------EE-EEeCCceEEEec
Confidence            34555 77888888887776554443 332  2222221  12345577888888773       22 344567777664


Q ss_pred             CCCCceEEEEecC-----CCEEEEEEcCCCcE
Q 033738           84 FSTPELLKTIDVK-----FPIFSMVRGKKGFA  110 (112)
Q Consensus        84 ~~~~~~~~~~~~~-----~~v~~~~~~~~~~~  110 (112)
                      ...|+.-..+..+     ..+.++.+.+++..
T Consensus       232 ~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~  263 (327)
T 2xbg_A          232 PDNSENWGELLSPLRRNSVGFLDLAYRTPNEV  263 (327)
T ss_dssp             TTEEEEECCCBCTTSSCCSCEEEEEESSSSCE
T ss_pred             CCCCCeeEeccCCcccCCcceEEEEecCCCEE
Confidence            2223322222211     24677777766554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=84.80  E-value=4.8  Score=24.44  Aligned_cols=53  Identities=9%  Similarity=-0.007  Sum_probs=29.7

Q ss_pred             CcCCCeEEcCC---CCEEEEE-c-C-----CeEEEEeCCCCc-----ee-eecc---ccCCceEEEEEecCCC
Q 033738            8 YVSSPPAFSND---VKRLLVC-T-S-----NTVSIFSTSTGL-----QI-SSLE---GHTAPVTTVIVVPAST   61 (112)
Q Consensus         8 ~v~~~~~~~~~---~~~l~~~-~-~-----~~v~~~~~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~   61 (112)
                      .... ++++|+   +..|+.+ . .     +.|..++.....     .+ ..+.   ........++|.|++.
T Consensus        76 ~p~g-ia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~  147 (352)
T 2ism_A           76 GLLG-LALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM  147 (352)
T ss_dssp             SEEE-EEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC
T ss_pred             Ccee-EEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC
Confidence            3455 889998   5555444 3 2     677777776431     11 1122   1112235789999985

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=84.74  E-value=4.9  Score=27.47  Aligned_cols=27  Identities=22%  Similarity=0.511  Sum_probs=23.8

Q ss_pred             EEEeeecCCcEEEEeCCCCceEEEEec
Q 033738           69 YCWTASLDETIKYWDFSTPELLKTIDV   95 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~   95 (112)
                      ++++-+.|+.+|+|+++++.++.+...
T Consensus       233 fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          233 YLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             EEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            777999999999999999998877665

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=83.66  E-value=8.2  Score=26.16  Aligned_cols=92  Identities=9%  Similarity=0.086  Sum_probs=54.2

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-----ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-----GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .|.+ +...++|+.|..|+ ++-+..+|.++++. ..+.     .....|.++...+++.       +.+ ++. +-+..
T Consensus       407 ~v~~-i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~-------lwi-gt~-~Gl~~  475 (795)
T 4a2l_A          407 NIKA-VYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGN-------LWL-GTL-SALVR  475 (795)
T ss_dssp             CEEE-EEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSC-------EEE-EES-SCEEE
T ss_pred             cEEE-EEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCC-------EEE-Eec-CceeE
Confidence            4554 66677787344455 67789999887653 2222     1235678887777774       222 233 45788


Q ss_pred             EeCCCCceEEEEec-------CCCEEEEEEcCCCcE
Q 033738           82 WDFSTPELLKTIDV-------KFPIFSMVRGKKGFA  110 (112)
Q Consensus        82 ~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~  110 (112)
                      ||..+++.......       ...+.++...++|..
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l  511 (795)
T 4a2l_A          476 FNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL  511 (795)
T ss_dssp             EETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred             EeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence            88876644322111       126777777777754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=83.52  E-value=7.6  Score=25.73  Aligned_cols=70  Identities=7%  Similarity=0.052  Sum_probs=42.7

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCce-EEEEEecCCCCccceeEEEEeee-cC-----CcEEEEe
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPV-TTVIVVPASTPATKILSYCWTAS-LD-----ETIKYWD   83 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~-~d-----~~i~~~~   83 (112)
                      .++.++++.++.|+  +..+.+||..+.+-...-.....+. ......+++.       +++.++ .+     ..+.+||
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-------iyv~GG~~~~~~~~~~~e~yd  320 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-------VFTIGGSWSGGVFEKNGEVYS  320 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-------EEEECCCCCSSSCCCCEEEEE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe-------EEEEeCcccCCcccccceEeC
Confidence            45678899999988  4789999987654222111111111 2344555774       455666 33     5688999


Q ss_pred             CCCCce
Q 033738           84 FSTPEL   89 (112)
Q Consensus        84 ~~~~~~   89 (112)
                      ..+...
T Consensus       321 ~~t~~W  326 (656)
T 1k3i_A          321 PSSKTW  326 (656)
T ss_dssp             TTTTEE
T ss_pred             CCCCcc
Confidence            887654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=83.35  E-value=5.4  Score=23.85  Aligned_cols=91  Identities=4%  Similarity=-0.014  Sum_probs=47.1

Q ss_pred             cCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccc----cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            9 VSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEG----HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      +.. +.+.++++.++.+.++.++..+.+.++.-..+..    ....+..+.+.+++.       +++ .+.++.+. +..
T Consensus       207 ~~~-~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~-------~~~-~g~~g~i~-~S~  276 (327)
T 2xbg_A          207 LHN-MGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE-------VWL-AGGAGALL-CSQ  276 (327)
T ss_dssp             EEE-EEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC-------EEE-EESTTCEE-EES
T ss_pred             cce-eEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE-------EEE-EeCCCeEE-EeC
Confidence            444 6677888777666678777764332332222221    223477888887663       333 34466663 333


Q ss_pred             CCCceEEEEec----CCCEEEEEEcCCCc
Q 033738           85 STPELLKTIDV----KFPIFSMVRGKKGF  109 (112)
Q Consensus        85 ~~~~~~~~~~~----~~~v~~~~~~~~~~  109 (112)
                      ..|+.-..+..    +..+..+.|.+++.
T Consensus       277 DgG~tW~~~~~~~~~~~~~~~v~~~~~~~  305 (327)
T 2xbg_A          277 DGGQTWQQDVDVKKVPSNFYKILFFSPDQ  305 (327)
T ss_dssp             STTSSCEECGGGTTSSSCCCEEEEEETTE
T ss_pred             CCCcccEEcCccCCCCCCeEEEEEECCCc
Confidence            33443333321    23556666654443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=82.41  E-value=6.7  Score=24.30  Aligned_cols=79  Identities=11%  Similarity=0.237  Sum_probs=48.9

Q ss_pred             CeEEEEeCC--CCceeeeccc------cC-CceEEEEE--ecCCCCccceeEEEEeeecCCcEEEEeCC-------CCce
Q 033738           28 NTVSIFSTS--TGLQISSLEG------HT-APVTTVIV--VPASTPATKILSYCWTASLDETIKYWDFS-------TPEL   89 (112)
Q Consensus        28 ~~v~~~~~~--~~~~~~~~~~------~~-~~v~~~~~--~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-------~~~~   89 (112)
                      ++|.+|++.  ++. +..+..      .. ..+..+++  +|...   +  .+++....++.+..|++.       +++.
T Consensus        99 n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g---~--~yafV~~k~G~~~q~~l~~~~~g~~~~~l  172 (355)
T 3amr_A           99 NTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTG---K--YYAMVTGKEGEFEQYELKADKNGYISGKK  172 (355)
T ss_dssp             CEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTC---C--EEEEEECSSSEEEEEEEEECTTSCEEEEE
T ss_pred             CeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCC---c--EEEEEECCCCeEEEEEEEeCCCCcccceE
Confidence            689999763  332 433311      11 34455666  56432   1  245567778999998872       2356


Q ss_pred             EEEEecCCCEEEEEEcCCCcEeC
Q 033738           90 LKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        90 ~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      ++++.....+..+...+....||
T Consensus       173 VR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          173 VRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEE
T ss_pred             EEEecCCCCcceEEEcCCCCeEE
Confidence            77787777888888887766554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=81.12  E-value=10  Score=25.61  Aligned_cols=92  Identities=10%  Similarity=0.047  Sum_probs=52.9

Q ss_pred             CcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeecc---ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            8 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLE---GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      .|.+ +...++|+..+...++-+..++.++++ ...+.   .....|.++...+++.       +. .++. +-+..+|.
T Consensus       408 ~v~~-i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~-------lw-igt~-~Gl~~~~~  476 (781)
T 3v9f_A          408 SVLC-SLKDSEGNLWFGTYLGNISYYNTRLKK-FQIIELEKNELLDVRVFYEDKNKK-------IW-IGTH-AGVFVIDL  476 (781)
T ss_dssp             BEEE-EEECTTSCEEEEETTEEEEEECSSSCE-EEECCSTTTCCCCEEEEEECTTSE-------EE-EEET-TEEEEEES
T ss_pred             ceEE-EEECCCCCEEEEeccCCEEEEcCCCCc-EEEeccCCCCCCeEEEEEECCCCC-------EE-EEEC-CceEEEeC
Confidence            4454 556666765554335678888877664 33332   1345678887777662       22 2333 45888887


Q ss_pred             CCCceEEEEecC------CCEEEEEEcCCCcE
Q 033738           85 STPELLKTIDVK------FPIFSMVRGKKGFA  110 (112)
Q Consensus        85 ~~~~~~~~~~~~------~~v~~~~~~~~~~~  110 (112)
                      .+++........      ..+.++...++|..
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l  508 (781)
T 3v9f_A          477 ASKKVIHHYDTSNSQLLENFVRSIAQDSEGRF  508 (781)
T ss_dssp             SSSSCCEEECTTTSSCSCSCEEEEEECTTCCE
T ss_pred             CCCeEEecccCcccccccceeEEEEEcCCCCE
Confidence            766543332221      26777777776654

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=80.09  E-value=3.3  Score=28.21  Aligned_cols=29  Identities=17%  Similarity=0.146  Sum_probs=22.6

Q ss_pred             cCCCCEEEEEc-CCeEEEEeCCCCceeeec
Q 033738           16 SNDVKRLLVCT-SNTVSIFSTSTGLQISSL   44 (112)
Q Consensus        16 ~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~   44 (112)
                      ..+..++++-+ |+++|+|++.+++.+...
T Consensus       228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~  257 (729)
T 3f7f_A          228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDY  257 (729)
T ss_dssp             EETTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ccCCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence            34567888888 999999999998765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.003
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 7e-09
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 8/71 (11%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
           +FS   + LL        +++      +   L GH   V+ + V               T
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG-------MAVAT 329

Query: 73  ASLDETIKYWD 83
            S D  +K W+
Sbjct: 330 GSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.2 bits (74), Expect = 0.004
 Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 7/60 (11%)

Query: 25  CTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84
               +  ++    G+   +  GH + +  +   P             T S D T + +D 
Sbjct: 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-------AFATGSDDATCRLFDL 255

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.0 bits (112), Expect = 2e-08
 Identities = 9/72 (12%), Positives = 21/72 (29%), Gaps = 7/72 (9%)

Query: 14 AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA 73
            +    ++  C   +V      +         H+   T     P+         YC + 
Sbjct: 24 GNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-------YCASG 76

Query: 74 SLDETIKYWDFS 85
           +   ++ WD +
Sbjct: 77 DVHGNVRIWDTT 88

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 34.1 bits (76), Expect = 0.002
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 68  SYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRG 105
           +   +AS D+TIK W+ +T ++ KTI V   I     G
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 288

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 34.1 bits (76), Expect = 0.002
 Identities = 8/73 (10%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 12  PPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
              +S D  ++   ++  T+ I++ +T     ++   T      + +  +          
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK------QAL 296

Query: 71  WTASLDETIKYWD 83
            + S +  I + +
Sbjct: 297 VSISANGFINFVN 309

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 2e-07
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
           A + + + +L  +    V  +   +G  +  L+GH   V +V V   S+   +  +   T
Sbjct: 315 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE-YNVFAT 373

Query: 73  ASLDETIKYWDF 84
            S D   + W +
Sbjct: 374 GSGDCKARIWKY 385

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (102), Expect = 7e-07
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 2   IRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
           + G  ++V     F +  K +L C    T+ ++       + +L  H   VT++     +
Sbjct: 243 LVGHDNWVRGV-LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 301

Query: 61  TPATKILSYCWTASLDETIKYWD 83
                   Y  T S+D+T+K W+
Sbjct: 302 -------PYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 2e-06
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 28  NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87
            T+ ++  STG+ + +L GH   V  V+             +  + + D+T++ WD+   
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK-------FILSCADDKTLRVWDYKNK 279

Query: 88  ELLKTID 94
             +KT++
Sbjct: 280 RCMKTLN 286

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 1e-05
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 40 QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID 94
          +  +L GH +PVT VI  P         S   +AS D TIK WD+ T +  +T+ 
Sbjct: 9  EKYALSGHRSPVTRVIFHPVF-------SVMVSASEDATIKVWDYETGDFERTLK 56

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (80), Expect = 6e-04
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 14/104 (13%)

Query: 5   GRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPA 63
           G          + D   +  C++  TV ++  +T    + L  H   V  +   P S+ +
Sbjct: 141 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 200

Query: 64  T-------------KILSYCWTASLDETIKYWDFSTPELLKTID 94
           +             K   +  + S D+TIK WD ST   L T+ 
Sbjct: 201 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.6 bits (75), Expect = 0.003
 Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 14 AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
           F      ++  +   T+ ++   TG    +L+GHT  V  +    +        +    
Sbjct: 24 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI 83

Query: 73 ASLDETIKYWDF 84
             D        
Sbjct: 84 KLWDFQGFECIR 95

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 8e-07
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 14 AFSNDVKRLLVCTSN-TVSIFSTSTG--LQISSLEGHTAPVTTVIVVPASTPATKILSYC 70
          A++ D  ++ +C +N  V I+  S    +Q+  L+ H   VT V   P S       +  
Sbjct: 14 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-------NRI 66

Query: 71 WTASLDETIKYWDF 84
           T   D     W  
Sbjct: 67 VTCGTDRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.4 bits (77), Expect = 0.002
 Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 3/85 (3%)

Query: 4   GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPA 63
           GGR  V    +      R      +  +    S          H   V+ + V+      
Sbjct: 281 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAK 340

Query: 64  TKILSYCWTASLDETIKYWDFSTPE 88
                   T  +D  +  WD  + E
Sbjct: 341 CSQFC---TTGMDGGMSIWDVRSLE 362

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 9e-06
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 9/71 (12%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
            F+   K  +     N ++ + T  G  I      ++ V +  +            Y  T
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD-------KYIVT 323

Query: 73  ASLDETIKYWD 83
            S D+    ++
Sbjct: 324 GSGDKKATVYE 334

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 3e-05
 Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 7/50 (14%)

Query: 44 LEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
            GH   +T +                ++A  +  I  WD ST    +  
Sbjct: 8  RYGHNKAITALSSSADG-------KTLFSADAEGHINSWDISTGISNRVF 50

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 1e-04
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 17  NDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL 75
            D ++     +  T+ ++  +T   +         +    V   +T   +I+S     SL
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS----LSL 316

Query: 76  DETIKYWD 83
           D T+ +++
Sbjct: 317 DGTLNFYE 324

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.4 bits (85), Expect = 1e-04
 Identities = 8/82 (9%), Positives = 19/82 (23%), Gaps = 8/82 (9%)

Query: 14  AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA 73
             S      +    N ++ +       I +          V                +  
Sbjct: 258 LRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGD-------KLYLG 309

Query: 74  SLDETIKYWDFSTPELLKTIDV 95
                +  ++  T E +K I +
Sbjct: 310 GTFNDLAVFNPDTLEKVKNIKL 331

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 2e-04
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 8/55 (14%)

Query: 40 QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID 94
          Q ++L GH   V T +    +        Y  T + D+ I+ +D    + L  + 
Sbjct: 4  QRTTLRGHMTSVITCLQFEDN--------YVITGADDKMIRVYDSINKKFLLQLS 50

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 4e-04
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 7   SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQI-SSLEGHTAPVTTVIVVPASTPATK 65
           + +S+   F      L+  + N  +I++  +G  + +++      + +V         T 
Sbjct: 282 TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSV----NFKGKTL 337

Query: 66  ILSYCWTASLDETIKYW--DFS 85
           + +       D        DFS
Sbjct: 338 VAA----VEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 6e-04
 Identities = 7/84 (8%), Positives = 21/84 (25%), Gaps = 3/84 (3%)

Query: 2  IRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60
          +RG  + V +      +   ++       + ++ +     +  L GH   V  +      
Sbjct: 8  LRGHMTSVIT--CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 61 TPATKILSYCWTASLDETIKYWDF 84
             +            +       
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHV 89

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 3e-04
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 8/60 (13%)

Query: 34 STSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTI 93
                    L+GH   V T +    +           + S D T+K W   T + L+T+
Sbjct: 2  RRGELKSPKVLKGHDDHVITCLQFCGN--------RIVSGSDDNTLKVWSAVTGKCLRTL 53

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (75), Expect = 0.003
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 1  MIRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPA 59
          +++G   +V +         R++  +  NT+ ++S  TG  + +L GHT  V +  +   
Sbjct: 11 VLKGHDDHVIT--CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68

Query: 60 STPATKILSYCWTASLDETIKYWDF 84
             +          + +        
Sbjct: 69 IIISGSTDRTLKVWNAETGECIHTL 93

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (79), Expect = 7e-04
 Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 11/46 (23%)

Query: 41 ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86
          + ++ GH   +T + V           +   + S D  I  W  S+
Sbjct: 6  LKTISGHNKGITALTV-----------NPLISGSYDGRIMEWSSSS 40

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.9 bits (78), Expect = 0.001
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 9/57 (15%)

Query: 28  NTVSIFSTSTGLQ-ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83
             + I+S    ++ I +L  H   V  +         + ++S    +  D  IK W+
Sbjct: 237 TNIFIYSVKRPMKIIKALNAHKDGVNNL----LWETPSTLVS----SGADACIKRWN 285

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 34.0 bits (76), Expect = 0.002
 Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 8/83 (9%)

Query: 13  PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72
               N  K       N +  F       I  +        +V V    +         W 
Sbjct: 245 STAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGS-------TVWL 296

Query: 73  ASLDETIKYWDFSTPELLKTIDV 95
                 +  +D  T E    +D+
Sbjct: 297 GGALGDLAAYDAETLEKKGQVDL 319

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 33.7 bits (75), Expect = 0.002
 Identities = 9/92 (9%), Positives = 21/92 (22%), Gaps = 11/92 (11%)

Query: 4   GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPA 63
                 S P                 +  +   T      +      +T + +       
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRK-- 327

Query: 64  TKILSYCWTASLDETIKYWDFSTPELLKTIDV 95
             ++        D  I  +    PE  +T++ 
Sbjct: 328 -TVMV----RKDDGKIYTFPLEKPEDERTVET 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.3 bits (74), Expect = 0.004
 Identities = 11/87 (12%), Positives = 27/87 (31%), Gaps = 9/87 (10%)

Query: 14  AFSNDVKRLLVCTS-NTVSIFSTSTG------LQISSLEGHTAPVTTVIVVPASTPATKI 66
           +  N     + C+    + ++            +  S   H + +  V V+ A       
Sbjct: 21  SACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78

Query: 67  LSYCWTASLDETIKYWDFSTPELLKTI 93
           L    T S    + ++  +  +  K +
Sbjct: 79  LCLVATTSFSGDLLFYRITREDETKKV 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.88
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.86
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.85
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.85
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.85
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.83
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.83
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.82
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.8
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.8
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.8
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.8
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.79
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.78
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.78
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.77
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.76
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.75
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.74
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.7
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.68
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.67
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.65
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.65
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.65
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.58
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.57
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.53
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.5
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.48
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.45
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.45
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.42
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.4
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.38
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.37
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.37
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.34
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.26
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.24
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.24
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.21
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.17
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.12
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.09
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.0
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.99
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.95
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.75
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.73
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.65
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.63
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.61
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.51
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.19
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.11
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.05
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.05
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.98
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.98
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.97
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.96
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.78
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.68
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.65
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.61
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.58
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.57
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.12
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.11
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.98
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.92
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.7
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.62
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.32
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.91
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.27
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.14
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.01
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.72
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.24
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.22
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.15
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.56
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.53
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	87.24
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	84.56

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=2.6e-21  Score=113.14  Aligned_cols=106  Identities=16%  Similarity=0.203  Sum_probs=92.7

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeE------------
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILS------------   68 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------   68 (112)
                      |+||.+.|.+ ++|+|++++|++|+ |+.|++||+.+++.+..+..|...|.+++|+|++.   .++.            
T Consensus        51 L~GH~~~I~~-l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~---~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          51 LRGHLAKIYA-MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN---YVACGGLDNICSIYNL  126 (340)
T ss_dssp             ECCCSSCEEE-EEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSS---EEEEEETTCCEEEEES
T ss_pred             ECCCCCCEEE-EEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccce---eeeeecccceeecccc
Confidence            6899999998 99999999999999 99999999999988889999999999999999873   2221            


Q ss_pred             -----------------------------------------------------------------------EEEeeecCC
Q 033738           69 -----------------------------------------------------------------------YCWTASLDE   77 (112)
Q Consensus        69 -----------------------------------------------------------------------~~~~~~~d~   77 (112)
                                                                                             ++++++.|+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  206 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             cccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCc
Confidence                                                                                   667788888


Q ss_pred             cEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           78 TIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        78 ~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .+++||+++++++..+..+. .+.+++|+|+++++
T Consensus       207 ~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l  241 (340)
T d1tbga_         207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF  241 (340)
T ss_dssp             EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEE
Confidence            99999998888888888766 89999999998865

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.7e-21  Score=117.16  Aligned_cols=101  Identities=22%  Similarity=0.337  Sum_probs=82.9

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CC---eEEEEeCCCCceeeec-------------cccCCceEEEEEecCCCCcc
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SN---TVSIFSTSTGLQISSL-------------EGHTAPVTTVIVVPASTPAT   64 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~---~v~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~   64 (112)
                      +.+|...|.+ ++|+|||++|++++ |+   .+++||+++++.+..+             .+|.+.|++++|+|+++   
T Consensus       227 l~~h~~~V~~-l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~---  302 (393)
T d1sq9a_         227 MINNSNSIRS-VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE---  302 (393)
T ss_dssp             --CCCCCEEE-EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS---
T ss_pred             cccccceEEE-cccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC---
Confidence            4678999998 99999999999998 64   5999999988766555             36889999999999996   


Q ss_pred             ceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEE----EEEEcCCCcE
Q 033738           65 KILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIF----SMVRGKKGFA  110 (112)
Q Consensus        65 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~----~~~~~~~~~~  110 (112)
                          ++++++.|++|++||+++|+++.++..|. .|.    .++|+|++..
T Consensus       303 ----~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         303 ----TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             ----EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred             ----eeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCE
Confidence                78899999999999999999999998775 443    3566666543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.8e-20  Score=106.83  Aligned_cols=106  Identities=24%  Similarity=0.279  Sum_probs=91.9

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeE------------
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILS------------   68 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------   68 (112)
                      |+||.+.|.+ ++|+|++++|++++ |+.|++||+++++.+..+..|...|.+++++|++.   .++.            
T Consensus        13 L~GH~~~I~~-l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~---~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          13 LSGHRSPVTR-VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK---LLASCSADMTIKLWDF   88 (317)
T ss_dssp             EECCSSCEEE-EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS---EEEEEETTSCCCEEET
T ss_pred             EcCCCCCeEE-EEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccc---cccccccccccccccc
Confidence            6899999998 99999999999998 99999999999888888888888899888888763   2211            


Q ss_pred             --------------------------EEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           69 --------------------------YCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        69 --------------------------~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                                                .+++++.|+.+++||+++++.+..+..+. .+.+++|+|+++++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI  158 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEE
Confidence                                      56788899999999999999988888776 89999999998865

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=3.3e-20  Score=110.81  Aligned_cols=99  Identities=19%  Similarity=0.211  Sum_probs=83.3

Q ss_pred             CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc--eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL--QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      .++|.+ ++|+|||++|++++ |+.|++||.++++  .+..+.+|.++|.+++|+|++.       ++++++.|+.+++|
T Consensus         7 ~~pIt~-~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~-------~l~s~s~D~~i~vW   78 (371)
T d1k8kc_           7 VEPISC-HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN-------RIVTCGTDRNAYVW   78 (371)
T ss_dssp             SSCCCE-EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT-------EEEEEETTSCEEEE
T ss_pred             CCCeEE-EEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCC-------EEEEEECCCeEEEE
Confidence            467888 99999999999998 8999999997664  4567788999999999999995       77899999999999


Q ss_pred             eCCCCceEEEE--ecCC-CEEEEEEcCCCcEeC
Q 033738           83 DFSTPELLKTI--DVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        83 ~~~~~~~~~~~--~~~~-~v~~~~~~~~~~~~~  112 (112)
                      |+.++......  ..+. .+.++.|+|+++.++
T Consensus        79 d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~  111 (371)
T d1k8kc_          79 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFA  111 (371)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEE
T ss_pred             eecccccccccccccccccccccccccccccce
Confidence            99877654443  3343 899999999998763

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=4.3e-20  Score=107.92  Aligned_cols=103  Identities=13%  Similarity=0.145  Sum_probs=90.0

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeec--cccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL--EGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +.+|...|.+ ++|+|+++.|++++ |+.+++|++........+  ..+...+.+++|+|++.       ++++++.|+.
T Consensus       222 ~~~h~~~i~~-v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-------~l~~g~~dg~  293 (340)
T d1tbga_         222 FTGHESDINA-ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-------LLLAGYDDFN  293 (340)
T ss_dssp             ECCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC-------EEEEEETTSC
T ss_pred             EeCCCCCeEE-EEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCC-------EEEEEECCCE
Confidence            4678899998 99999999999998 999999999887665544  34566799999999995       7789999999


Q ss_pred             EEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           79 IKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      |++||+.+++++..+..|. +|.+++|+|++++|+
T Consensus       294 i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~  328 (340)
T d1tbga_         294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence            9999999999999998876 999999999998763

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2e-19  Score=107.13  Aligned_cols=100  Identities=21%  Similarity=0.297  Sum_probs=86.5

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeecc------------------ccCCceEEEEEecCCCCccc
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLE------------------GHTAPVTTVIVVPASTPATK   65 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~   65 (112)
                      +|.+.|.+ ++|+|||++|++|+|+.|++||+.+++.+..+.                  .+...|.+++|+|++.    
T Consensus        60 ~H~~~V~~-l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~----  134 (388)
T d1erja_          60 DHTSVVCC-VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK----  134 (388)
T ss_dssp             ECSSCCCE-EEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS----
T ss_pred             CCCCcEEE-EEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC----
Confidence            59999998 999999999999999999999998876554442                  3556789999999995    


Q ss_pred             eeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           66 ILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        66 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                         ++++++.|+.+++||...++.+.....+. .+.++.+++++..+
T Consensus       135 ---~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  178 (388)
T d1erja_         135 ---FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL  178 (388)
T ss_dssp             ---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ---cceecccccccccccccccccccccccccccccccccccccccc
Confidence               78899999999999999999988888766 89999999988654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.83  E-value=7.5e-20  Score=107.33  Aligned_cols=102  Identities=11%  Similarity=-0.032  Sum_probs=86.0

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCcee--eeccccCCceEEEEEecCCCCccceeEEEEeeec--C
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI--SSLEGHTAPVTTVIVVPASTPATKILSYCWTASL--D   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--d   76 (112)
                      +.+|.+.|.+ ++|+|+|++|++|+ |+.|++||+..+...  ..+..|.++|.+++|+|++.       ++++++.  +
T Consensus        54 ~~~H~~~v~~-~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~-------~l~~~~~~~~  125 (311)
T d1nr0a1          54 YTEHSHQTTV-AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK-------RIAAVGEGRE  125 (311)
T ss_dssp             ECCCSSCEEE-EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC-------EEEEEECCSS
T ss_pred             EcCCCCCEEE-EEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccc-------cccccccccc
Confidence            5789999998 99999999999998 999999999876533  45677889999999999985       5556654  5


Q ss_pred             CcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           77 ETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      ..+++|+.++++....+..+. .|.+++|+|+++++
T Consensus       126 ~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~  161 (311)
T d1nr0a1         126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR  161 (311)
T ss_dssp             CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCE
T ss_pred             ccccccccccccccccccccccccccccccccceee
Confidence            679999999998888887776 89999999998753

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.6e-19  Score=104.16  Aligned_cols=100  Identities=10%  Similarity=0.167  Sum_probs=82.0

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCcee-----eeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQI-----SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +|...|.+ ++|+|+|++|++|+|+.|++||+..+...     .....|.+.|.+++|+|++.       ++++++.|+.
T Consensus        49 ~H~~~V~~-v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~-------~l~s~~~dg~  120 (337)
T d1gxra_          49 NHGEVVCA-VTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-------TLIVGGEAST  120 (337)
T ss_dssp             CCSSCCCE-EEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-------EEEEEESSSE
T ss_pred             CCCCcEEE-EEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC-------EEEEeecccc
Confidence            68899998 99999999999999999999999765322     22346788999999999995       7789999999


Q ss_pred             EEEEeCCCC--ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTP--ELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~--~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      |++||+...  +....+..+. .+..+.|+|++.++
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  156 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC  156 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             cccccccccccccccccccccccccccccccccccc
Confidence            999998754  4455556555 88999999998765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.80  E-value=2.6e-18  Score=100.71  Aligned_cols=99  Identities=14%  Similarity=0.259  Sum_probs=84.8

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      +.+.... ++++|+|+.|+.+.++.+.+||+++......+.+|...|++++|+|++.       ++++++.|+.|++||+
T Consensus        16 ~r~~~~~-~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~-------~latg~~dg~i~iwd~   87 (311)
T d1nr0a1          16 ARGTAVV-LGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-------YCASGDVHGNVRIWDT   87 (311)
T ss_dssp             CTTCCCC-CEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-------EEEEEETTSEEEEEES
T ss_pred             CCCCeEE-EEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCC-------eEeccccCceEeeeee
Confidence            3445565 8999999999998888899999998887888889999999999999996       8889999999999999


Q ss_pred             CCCceE--EEEecCC-CEEEEEEcCCCcEe
Q 033738           85 STPELL--KTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        85 ~~~~~~--~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      .++...  ..+..+. +|.+++|+|+++++
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l  117 (311)
T d1nr0a1          88 TQTTHILKTTIPVFSGPVKDISWDSESKRI  117 (311)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred             eccccccccccccccCcccccccccccccc
Confidence            887654  3455555 99999999999876

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2.1e-18  Score=103.65  Aligned_cols=99  Identities=14%  Similarity=0.119  Sum_probs=80.7

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeec------cccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL------EGHTAPVTTVIVVPASTPATKILSYCWTASLDE   77 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (112)
                      +...+.+ ++|+|++ .|++++ |+.|++||+.+++.+..+      .+|..+|.+++|+|++.       ++++++.|+
T Consensus       183 ~~~~~~~-v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-------~l~sgs~D~  253 (393)
T d1sq9a_         183 PSQFATS-VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-------LLAIAHDSN  253 (393)
T ss_dssp             SCCCCCE-EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-------EEEEEEEET
T ss_pred             CCCcEEE-EEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc-------eeeeecCCC
Confidence            4455776 9999998 788888 999999999988765433      45788999999999996       777998886


Q ss_pred             ---cEEEEeCCCCceEEEEe-------------cCC-CEEEEEEcCCCcEeC
Q 033738           78 ---TIKYWDFSTPELLKTID-------------VKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        78 ---~i~~~~~~~~~~~~~~~-------------~~~-~v~~~~~~~~~~~~~  112 (112)
                         .+++||+++++.+..+.             .|. .|++++|+|++++|+
T Consensus       254 t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~  305 (393)
T d1sq9a_         254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  305 (393)
T ss_dssp             TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             CcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeE
Confidence               48999999998887764             344 799999999998763

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.1e-18  Score=102.02  Aligned_cols=99  Identities=14%  Similarity=0.190  Sum_probs=79.4

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      |+||.+.|..  ++++++++|++|+ |+.|++||+.+++.+..+.+|.+.|.+++|+|++        ++++++.|+.++
T Consensus         8 L~GH~~~vit--c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~--------~l~s~s~D~~i~   77 (355)
T d1nexb2           8 LRGHMTSVIT--CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--------ILVSGSTDRTVR   77 (355)
T ss_dssp             EECCSSSCEE--EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT--------EEEEEETTCCEE
T ss_pred             ECCcCCCcEE--EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC--------EEEEEecccccc
Confidence            7899998754  4566789999998 9999999999999999999999999999999875        677999999999


Q ss_pred             EEeCCCCceEEEEecCC---CEEEEEEcCCCcE
Q 033738           81 YWDFSTPELLKTIDVKF---PIFSMVRGKKGFA  110 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~  110 (112)
                      +|+..............   ......+.+++..
T Consensus        78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY  110 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             cccccccccccccccccccccccccccccccce
Confidence            99999887766554433   3333444555443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.4e-18  Score=101.46  Aligned_cols=100  Identities=12%  Similarity=0.067  Sum_probs=87.5

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      .|.+.+.+ ++|+|+++.+++++ |+.+++||++.++.. ....|...+.+++|+|++.       ++++++.|+.|++|
T Consensus       222 ~~~~~i~~-l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~-------~l~s~s~Dg~i~iw  292 (337)
T d1gxra_         222 DFTSQIFS-LGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGK-------WFVSTGKDNLLNAW  292 (337)
T ss_dssp             ECSSCEEE-EEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSS-------EEEEEETTSEEEEE
T ss_pred             ccccceEE-EEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCC-------EEEEEeCCCeEEEE
Confidence            36677887 99999999999988 899999999987644 4556888999999999995       77799999999999


Q ss_pred             eCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           83 DFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      |..+++.+........|.+++|+|++++|+
T Consensus       293 d~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  322 (337)
T d1gxra_         293 RTPYGASIFQSKESSSVLSCDISVDDKYIV  322 (337)
T ss_dssp             ETTTCCEEEEEECSSCEEEEEECTTSCEEE
T ss_pred             ECCCCCEEEEccCCCCEEEEEEeCCCCEEE
Confidence            999999998888777999999999998763

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.79  E-value=1.2e-18  Score=100.88  Aligned_cols=102  Identities=15%  Similarity=0.164  Sum_probs=79.3

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      +++||.+.|.+ ++|+|++++|++++ |+.|++||+++++....+. .|...|.+++|+|++.        +++++.|+.
T Consensus         7 ~~~GH~~~V~~-l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~--------~~~~~~d~~   77 (299)
T d1nr0a2           7 VRYGHNKAITA-LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD--------LFTVSWDDH   77 (299)
T ss_dssp             EECCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC--------EEEEETTTE
T ss_pred             EcCCCCCCcEE-EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce--------eecccceee
Confidence            36899999998 99999999999998 9999999999988777764 6888999999999983        347788999


Q ss_pred             EEEEeCCCCce----EEEEecCCCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPEL----LKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +++|+......    .........+.+++++|+|+.+
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  114 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA  114 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred             EEEeccCCccccccccccccccccccccccccccccc
Confidence            99999764321    1111223366777777777643

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=4.2e-18  Score=98.12  Aligned_cols=87  Identities=23%  Similarity=0.343  Sum_probs=78.3

Q ss_pred             CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738           19 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        19 ~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~   97 (112)
                      +..+++++ |+.+++||.++++.+..+..|...+.+++++|++.       ++++++.|+.|++||+++++++..+..|.
T Consensus       217 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~s~~~dg~i~iwd~~~~~~~~~~~~h~  289 (317)
T d1vyhc1         217 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK-------FILSCADDKTLRVWDYKNKRCMKTLNAHE  289 (317)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS-------CEEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred             CceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCC-------EEEEEECCCeEEEEECCCCcEEEEEcCCC
Confidence            45677777 89999999999998899999999999999999995       77799999999999999999999998876


Q ss_pred             -CEEEEEEcCCCcEeC
Q 033738           98 -PIFSMVRGKKGFAVF  112 (112)
Q Consensus        98 -~v~~~~~~~~~~~~~  112 (112)
                       +|.+++|+|++++|+
T Consensus       290 ~~V~~~~~s~~~~~l~  305 (317)
T d1vyhc1         290 HFVTSLDFHKTAPYVV  305 (317)
T ss_dssp             SCEEEEEECSSSSCEE
T ss_pred             CCEEEEEEcCCCCEEE
Confidence             999999999998763

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=7.4e-18  Score=100.53  Aligned_cols=101  Identities=17%  Similarity=0.049  Sum_probs=85.7

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC------------------ceeeeccccCCceEEEEEecCCCCc
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG------------------LQISSLEGHTAPVTTVIVVPASTPA   63 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~   63 (112)
                      .+|...|.+ ++|+|+++.|++++ |+.+++|+....                  ........|...+.+++|+|++.  
T Consensus       138 ~~~~~~v~~-v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--  214 (371)
T d1k8kc_         138 KPIRSTVLS-LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS--  214 (371)
T ss_dssp             TTCCSCEEE-EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS--
T ss_pred             ccccccccc-ccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc--
Confidence            467788887 99999999999998 999999997532                  12344456778899999999985  


Q ss_pred             cceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           64 TKILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        64 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                           ++++++.|+.+++||+.++..+..+..+. ++.+++|+|+++++
T Consensus       215 -----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~l  258 (371)
T d1k8kc_         215 -----RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV  258 (371)
T ss_dssp             -----EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEE
T ss_pred             -----cccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEE
Confidence                 67799999999999999999998888876 89999999998765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=7.9e-18  Score=100.14  Aligned_cols=101  Identities=18%  Similarity=0.268  Sum_probs=82.0

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCce------------eeeccccCCceEEEEEecCCCCccceeEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQ------------ISSLEGHTAPVTTVIVVPASTPATKILSY   69 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   69 (112)
                      .+|.+.|.+ ++|+|+++.|++++ |+.+++||+.++..            ......|...+.+++|+|++.       +
T Consensus       251 ~~h~~~v~~-l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~  322 (388)
T d1erja_         251 TGHKDSVYS-VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-------Y  322 (388)
T ss_dssp             CCCSSCEEE-EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-------E
T ss_pred             cCCCCCEEE-EEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC-------E
Confidence            468888997 99999999999998 99999999875432            233345778899999999985       7


Q ss_pred             EEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEE------cCCCcEe
Q 033738           70 CWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVR------GKKGFAV  111 (112)
Q Consensus        70 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~------~~~~~~~  111 (112)
                      +++++.|+.|++||+++++++..+..|. .|.++++      +|++++|
T Consensus       323 l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l  371 (388)
T d1erja_         323 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF  371 (388)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEE
Confidence            7899999999999999999999999877 8888875      5667665

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=5e-18  Score=98.60  Aligned_cols=88  Identities=8%  Similarity=0.129  Sum_probs=71.7

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCcee---eeccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI---SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      ++++|.+.|.+ ++|+|++++|++++ |++|++||++.+...   .....|.++|.+++|+|++.      .++++++.|
T Consensus         6 ~~~~h~d~I~~-l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~------~~l~sg~~d   78 (342)
T d1yfqa_           6 IEQAPKDYISD-IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD------LQIYVGTVQ   78 (342)
T ss_dssp             CSSCCSSCEEE-EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS------EEEEEEETT
T ss_pred             cCCCCCCCEEE-EEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCC------CEEEEcccc
Confidence            46889999998 99999999999998 999999998765332   23336899999999998764      367799999


Q ss_pred             CcEEEEeCCCCceEEEEec
Q 033738           77 ETIKYWDFSTPELLKTIDV   95 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~~~~   95 (112)
                      +.+++|+...+........
T Consensus        79 ~~v~~w~~~~~~~~~~~~~   97 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQALTN   97 (342)
T ss_dssp             SCEEEECSSSSSSEEECBS
T ss_pred             cceeeeecccccccccccc
Confidence            9999999987766555543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=3.2e-17  Score=94.36  Aligned_cols=106  Identities=12%  Similarity=0.087  Sum_probs=81.7

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee-eccccCCceEEEEEecCCCCccc---eeEEEEeeecCCc
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS-SLEGHTAPVTTVIVVPASTPATK---ILSYCWTASLDET   78 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~d~~   78 (112)
                      .|...+.+ ++|+|++++|++++ |+.|++||+.++.... .+..|...|.+++|+|.+.....   --.++++++.|+.
T Consensus       160 ~~~~~v~~-~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~  238 (287)
T d1pgua2         160 PLRAKPSY-ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN  238 (287)
T ss_dssp             CCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC
T ss_pred             ccCCceeE-EEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe
Confidence            36677887 99999999999998 8999999998876543 46778999999999986520000   0026779999999


Q ss_pred             EEEEeCCC-CceEEEEecCC-CEEEEEEcCCCcE
Q 033738           79 IKYWDFST-PELLKTIDVKF-PIFSMVRGKKGFA  110 (112)
Q Consensus        79 i~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~  110 (112)
                      +++||+++ ++.+..+..|. .|.+++|+|++.+
T Consensus       239 i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l  272 (287)
T d1pgua2         239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTL  272 (287)
T ss_dssp             EEEEESSCTTCCEEETTSSTTCEEEEEEEETTEE
T ss_pred             EEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEE
Confidence            99999876 44555555665 8999999998764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=6.3e-17  Score=95.14  Aligned_cols=99  Identities=13%  Similarity=0.030  Sum_probs=86.2

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      +|...+.+ ++|+|||+.|++++ +  ..+++||.++++ ...+..+...+.+++|+|++.       ++++++.++.++
T Consensus        40 ~~~~~v~~-~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~~~~v~~~~~spdg~-------~l~~~~~~~~~~  110 (360)
T d1k32a3          40 PEPLRIRY-VRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGK-------FAVVANDRFEIM  110 (360)
T ss_dssp             SCCSCEEE-EEECSSSEEEEEEEETTEEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSS-------EEEEEETTSEEE
T ss_pred             cCCCCEEE-EEECCCCCEEEEEEcCCCCEEEEEECCCCc-EEEeeCCCceEEeeeeccccc-------ccceeccccccc
Confidence            58888987 99999999998776 4  479999998775 566777889999999999995       778999999999


Q ss_pred             EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  111 (112)
                      +|+..+++....+..+. .+.+++|+|+|+++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  142 (360)
T d1k32a3         111 TVDLETGKPTVIERSREAMITDFTISDNSRFI  142 (360)
T ss_dssp             EEETTTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred             cccccccceeeeeecccccccchhhccceeee
Confidence            99999999888887766 88899999999876

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.9e-16  Score=90.67  Aligned_cols=83  Identities=25%  Similarity=0.360  Sum_probs=71.0

Q ss_pred             CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +|+||.+.|..  +++++|++|++|+ |+.|++||+.+++.+..+.+|.+.|.+++++|+         ++++++.|+.+
T Consensus        11 ~l~GH~~~V~s--~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~---------~l~s~s~D~~~   79 (342)
T d2ovrb2          11 VLKGHDDHVIT--CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---------IIISGSTDRTL   79 (342)
T ss_dssp             EEECSTTSCEE--EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT---------EEEEEETTSCE
T ss_pred             EECCcCCceEE--EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC---------ccccceecccc
Confidence            37899999875  4778899999998 999999999999999999999999999999863         66799999999


Q ss_pred             EEEeCCCCceEEEEe
Q 033738           80 KYWDFSTPELLKTID   94 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~   94 (112)
                      ++|+...........
T Consensus        80 ~~~~~~~~~~~~~~~   94 (342)
T d2ovrb2          80 KVWNAETGECIHTLY   94 (342)
T ss_dssp             EEEETTTTEEEEEEC
T ss_pred             cccccccccceeccc
Confidence            999988765544443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=8.6e-16  Score=90.20  Aligned_cols=87  Identities=23%  Similarity=0.317  Sum_probs=71.1

Q ss_pred             cCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEe---cCCCCccceeEEEEeeecCC
Q 033738            3 RGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVV---PASTPATKILSYCWTASLDE   77 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~d~   77 (112)
                      .+|...|.+ ++|+|+ +..+++++ |+.|++||+++++.+..+..|...+..+.|+   |++.       ++++++.|+
T Consensus       202 ~~~~~~v~~-v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~-------~l~s~s~D~  273 (325)
T d1pgua1         202 HKQGSFVRD-VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ-------KFATVGADA  273 (325)
T ss_dssp             SCTTCCEEE-EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSS-------EEEEEETTS
T ss_pred             cCCCCccEE-eeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCC-------EEEEEeCCC
Confidence            457778887 999997 57888887 9999999999998888888777766544444   5664       777999999


Q ss_pred             cEEEEeCCCCceEEEEecCC
Q 033738           78 TIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        78 ~i~~~~~~~~~~~~~~~~~~   97 (112)
                      .+++||+++++++..+..+.
T Consensus       274 ~i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         274 TIRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             EEEEEETTTTEEEEEEECCT
T ss_pred             eEEEEECCCCCEEEEEEecC
Confidence            99999999999988876544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=8.9e-16  Score=90.14  Aligned_cols=103  Identities=16%  Similarity=0.140  Sum_probs=79.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCE-EEEEc-CCeEEEEeCCCCceeeec---cccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738            2 IRGGRSYVSSPPAFSNDVKR-LLVCT-SNTVSIFSTSTGLQISSL---EGHTAPVTTVIVVPASTPATKILSYCWTASLD   76 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~-l~~~~-~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   76 (112)
                      +.+|...+.+ ++|+|++.. +++++ |+.+++||....+....+   ..+...|.+++|+|+..      .++++++.|
T Consensus       155 ~~~h~~~v~~-~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~------~~l~s~~~d  227 (325)
T d1pgua1         155 VSGHSQRINA-CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG------EFVITVGSD  227 (325)
T ss_dssp             CCSCSSCEEE-EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC------CEEEEEETT
T ss_pred             eeeccccccc-ccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccc------eeccccccc
Confidence            4678889998 999999865 56676 899999999876544433   45677899999999753      267799999


Q ss_pred             CcEEEEeCCCCceEEEEecCC-CEEEEEEc---CCCcEe
Q 033738           77 ETIKYWDFSTPELLKTIDVKF-PIFSMVRG---KKGFAV  111 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~---~~~~~~  111 (112)
                      +.|++||.++++.+..+..+. ++..+.|+   |+|+++
T Consensus       228 ~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l  266 (325)
T d1pgua1         228 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF  266 (325)
T ss_dssp             CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEE
T ss_pred             cceeeeeeccccccccccccccccccceeeeeccCCCEE
Confidence            999999999999998888665 44444333   566554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.65  E-value=1.9e-15  Score=87.20  Aligned_cols=99  Identities=24%  Similarity=0.280  Sum_probs=76.4

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCcee---eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI---SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      .|...|.+ ++|+|+++.+++++ ++.+++||+.++...   ..+..|...|.+++|+|++.       ++++++.|+.+
T Consensus       177 ~~~~~i~~-~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-------~l~sgs~dg~i  248 (299)
T d1nr0a2         177 VHPAEITS-VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-------RLATGSLDNSV  248 (299)
T ss_dssp             ECSSCEEE-EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS-------EEEEEETTSCE
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ceEEEcCCCEE
Confidence            57788887 99999999999998 899999999876544   34556888999999999995       78899999999


Q ss_pred             EEEeCCCCceEEEEe--cC-C-CEEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTID--VK-F-PIFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~--~~-~-~v~~~~~~~~~~~~  111 (112)
                      ++||++++.......  .+ . .+.++.|. ++++|
T Consensus       249 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l  283 (299)
T d1nr0a2         249 IVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTI  283 (299)
T ss_dssp             EEEETTCTTSCCEEETTSSTTSCEEEEEEE-ETTEE
T ss_pred             EEEECCCCCcceEEEecCCCCCcEEEEEEC-CCCEE
Confidence            999998765433332  22 2 56766654 44443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.65  E-value=8.9e-16  Score=90.17  Aligned_cols=90  Identities=13%  Similarity=0.096  Sum_probs=72.3

Q ss_pred             eEEcC-CCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC--CcEEEEeCCCCce
Q 033738           13 PAFSN-DVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD--ETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~-~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~~   89 (112)
                      ..||| ||+++++++.+.|++||...+... .+ .|...+.+++|+|+++       .+++++.+  ..+++||.++++.
T Consensus         8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~-~~-~~~~~v~~~~~spDg~-------~l~~~~~~~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KV-PEPLRIRYVRRGGDTK-------VAFIHGTREGDFLGIYDYRTGKA   78 (360)
T ss_dssp             EEEEECGGGCEEEEETTEEEEECTTSSBEE-EC-SCCSCEEEEEECSSSE-------EEEEEEETTEEEEEEEETTTCCE
T ss_pred             ccccCCCCCEEEEEECCeEEEEECCCCcEE-Ec-cCCCCEEEEEECCCCC-------EEEEEEcCCCCEEEEEECCCCcE
Confidence            67999 999999999999999999877643 44 5888999999999995       44454443  3799999998877


Q ss_pred             EEEEecCCCEEEEEEcCCCcEe
Q 033738           90 LKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        90 ~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      .........+.+++|+|+|+++
T Consensus        79 ~~~~~~~~~v~~~~~spdg~~l  100 (360)
T d1k32a3          79 EKFEENLGNVFAMGVDRNGKFA  100 (360)
T ss_dssp             EECCCCCCSEEEEEECTTSSEE
T ss_pred             EEeeCCCceEEeeeeccccccc
Confidence            6554445599999999999876

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.1e-15  Score=84.29  Aligned_cols=81  Identities=26%  Similarity=0.307  Sum_probs=66.4

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      +|...|.   ++++||++|++|+ |+.|++||+++++.+..+.+|.+.|.+++|  ++.       ++++++.|+.+++|
T Consensus        13 ~~~~~V~---c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~-------~l~s~s~D~~i~~~   80 (293)
T d1p22a2          13 ETSKGVY---CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DER-------VIITGSSDSTVRVW   80 (293)
T ss_dssp             SSCCCEE---EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSS-------EEEEEETTSCEEEE
T ss_pred             CCCCCEE---EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccc-------eeeccccccccccc
Confidence            4445554   3567899999999 999999999999999999999999998876  453       67799999999999


Q ss_pred             eCCCCceEEEEecC
Q 033738           83 DFSTPELLKTIDVK   96 (112)
Q Consensus        83 ~~~~~~~~~~~~~~   96 (112)
                      ++..+.........
T Consensus        81 ~~~~~~~~~~~~~~   94 (293)
T d1p22a2          81 DVNTGEMLNTLIHH   94 (293)
T ss_dssp             ESSSCCEEEEECCC
T ss_pred             cccccccccccccc
Confidence            99988766555443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.8e-14  Score=81.37  Aligned_cols=97  Identities=24%  Similarity=0.367  Sum_probs=72.7

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc---cCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG---HTAPVTTVIVVPASTPATKILSYCWTASLDET   78 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (112)
                      .+|...+.+ +  +++++++++++ |+.|++||....+....+..   |...+.++.++  +.       ++++++.|+.
T Consensus       214 ~~~~~~v~~-~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~s~s~Dg~  281 (342)
T d2ovrb2         214 TGHQSLTSG-M--ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN-------FVITSSDDGT  281 (342)
T ss_dssp             CCCCSCEEE-E--EEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS-------EEEEEETTSE
T ss_pred             cccccceeE-E--ecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CC-------eeEEEcCCCE
Confidence            456666554 4  44567999998 99999999988766655543   44555666554  43       6779999999


Q ss_pred             EEEEeCCCCceEEEEec-----C-CCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDV-----K-FPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~-----~-~~v~~~~~~~~~~~~  111 (112)
                      |++||+++++.+..+..     + ..|++++|+|++..+
T Consensus       282 i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~l  320 (342)
T d2ovrb2         282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC  320 (342)
T ss_dssp             EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred             EEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEE
Confidence            99999999999887753     2 269999999998765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.57  E-value=1.8e-14  Score=84.06  Aligned_cols=94  Identities=14%  Similarity=0.149  Sum_probs=76.4

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL   90 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~   90 (112)
                      ++++++++++++++ ++.|.+||+++++.+..++ .+......++|+||++      .+++++..++.+++||+.+++.+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~------~l~v~~~~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR------TAYVLNNHYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS------EEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCC------EEEEEECCCCcEEEEeCccCeee
Confidence            67899999999998 8999999999998887775 3445568999999995      23457778899999999999888


Q ss_pred             EEEecCC-------CEEEEEEcCCCcEeC
Q 033738           91 KTIDVKF-------PIFSMVRGKKGFAVF  112 (112)
Q Consensus        91 ~~~~~~~-------~v~~~~~~~~~~~~~  112 (112)
                      ..+....       .+..++|+|||+++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~  104 (346)
T d1jmxb_          76 FHANLSSVPGEVGRSMYSFAISPDGKEVY  104 (346)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred             eeecccccccccCCceEEEEEecCCCEEE
Confidence            7776432       345789999998764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=6.1e-14  Score=80.47  Aligned_cols=74  Identities=16%  Similarity=0.196  Sum_probs=62.2

Q ss_pred             ccCCCCCcCCCeEEcCCC----------CEEEEEc-CCeEEEEeCCC-CceeeeccccCCceEEEEEecCCCCccceeEE
Q 033738            2 IRGGRSYVSSPPAFSNDV----------KRLLVCT-SNTVSIFSTST-GLQISSLEGHTAPVTTVIVVPASTPATKILSY   69 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~----------~~l~~~~-~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   69 (112)
                      +.+|...|.+ ++|+|++          +++++++ |+.|++||++. .+.+..+.+|...|.+++|+|++        .
T Consensus       201 ~~~h~~~v~~-~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~--------~  271 (287)
T d1pgua2         201 WAFRTSKINA-ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--------T  271 (287)
T ss_dssp             SCCCSSCEEE-EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT--------E
T ss_pred             ccccccccce-eeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC--------E
Confidence            4578888887 9998754          6788888 99999999876 45567778899999999999987        5


Q ss_pred             EEeeecCCcEEEEeC
Q 033738           70 CWTASLDETIKYWDF   84 (112)
Q Consensus        70 ~~~~~~d~~i~~~~~   84 (112)
                      +++++.|+.+++|++
T Consensus       272 l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         272 LVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEEECCCeEEEEEE
Confidence            669999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=2.8e-13  Score=78.82  Aligned_cols=99  Identities=18%  Similarity=0.202  Sum_probs=75.4

Q ss_pred             cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .++...+.. +.++|+++.+++++ |+.+++||.+++..+..+..|...|.+++++++         ++++++.|+.|++
T Consensus       198 ~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~---------~l~~~~~dg~i~i  267 (355)
T d1nexb2         198 SGHTDRIYS-TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK---------FLVSAAADGSIRG  267 (355)
T ss_dssp             CCCSSCEEE-EEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSS---------EEEEECTTSEEEE
T ss_pred             ecccccccc-ccccccceeeecccccceEEeeeccccccccccccccccccccccccc---------eeeeeeccccccc
Confidence            345556666 88999999999998 899999999999888999999999999988642         6779999999999


Q ss_pred             EeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ||+.++................++++++++
T Consensus       268 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l  297 (355)
T d1nexb2         268 WDANDYSRKFSYHHTNLSAITTFYVSDNIL  297 (355)
T ss_dssp             EETTTCCEEEEEECTTCCCCCEEEECSSEE
T ss_pred             ccccccceecccccCCceEEEEEcCCCCEE
Confidence            999987665444333222223445555543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.48  E-value=8.1e-14  Score=84.36  Aligned_cols=91  Identities=12%  Similarity=0.096  Sum_probs=68.5

Q ss_pred             EEcCCCC--EEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE
Q 033738           14 AFSNDVK--RLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL   90 (112)
Q Consensus        14 ~~~~~~~--~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~   90 (112)
                      .++.|.+  .+++.+ |+.|++||+.+++.+..+..+. .+..++|+||++       ++++++.|+.+++||+.+++..
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk-------~l~~~~~d~~v~vwd~~t~~~~   96 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGR-------YLLVIGRDARIDMIDLWAKEPT   96 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSC-------EEEEEETTSEEEEEETTSSSCE
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCC-------EEEEEeCCCCEEEEEccCCcee
Confidence            3445543  445666 7999999999999888888764 588999999996       6678899999999999988754


Q ss_pred             EE--EecCC----CEEEEEEcCCCcEeC
Q 033738           91 KT--IDVKF----PIFSMVRGKKGFAVF  112 (112)
Q Consensus        91 ~~--~~~~~----~v~~~~~~~~~~~~~  112 (112)
                      ..  +....    .+.++.|+|||++++
T Consensus        97 ~~~~i~~~~~~~~~~~s~~~spDG~~l~  124 (426)
T d1hzua2          97 KVAEIKIGIEARSVESSKFKGYEDRYTI  124 (426)
T ss_dssp             EEEEEECCSEEEEEEECCSTTCTTTEEE
T ss_pred             EEEEEeCCCCCcceEEeeeecCCCCEEE
Confidence            33  33222    456677788998763

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=4.7e-13  Score=81.40  Aligned_cols=97  Identities=11%  Similarity=-0.047  Sum_probs=70.8

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCcee--eecc---ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI--SSLE---GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~--~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+.. ++|||||+++++++ |+.+++||+.+++..  ..++   .+.+.+...+|+||++      .+++++..++.+++
T Consensus        63 ~~~~-v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~------~l~vs~~~~~~v~i  135 (432)
T d1qksa2          63 AVHI-SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK------YAIAGAYWPPQYVI  135 (432)
T ss_dssp             CEEE-EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTT------EEEEEEEETTEEEE
T ss_pred             CeeE-EEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCC------EEEEEcCCCCeEEE
Confidence            4666 99999999999988 899999999876532  2222   2334444556677885      23468888999999


Q ss_pred             EeCCCCceEEEEecC------------CCEEEEEEcCCCcEe
Q 033738           82 WDFSTPELLKTIDVK------------FPIFSMVRGKKGFAV  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~  111 (112)
                      ||..+++++..+..+            .....+.++|+|..+
T Consensus       136 ~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~  177 (432)
T d1qksa2         136 MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF  177 (432)
T ss_dssp             EETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred             EeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEE
Confidence            999999888776532            245667888888654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=7e-13  Score=76.55  Aligned_cols=88  Identities=13%  Similarity=0.100  Sum_probs=66.9

Q ss_pred             CCCCEEEEEc-CCeEEEEeCCCCcee---------------eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738           17 NDVKRLLVCT-SNTVSIFSTSTGLQI---------------SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus        17 ~~~~~l~~~~-~~~v~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      .++..+++++ |+.+.+|+.......               .....+...+.+++|+|++.       ++++++.||.|+
T Consensus       204 ~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-------~lasg~~Dg~v~  276 (342)
T d1yfqa_         204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-------FLYTAGSDGIIS  276 (342)
T ss_dssp             GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-------CEEEEETTSCEE
T ss_pred             CCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc-------EEEEECCCCEEE
Confidence            4567788887 899999987643211               11123556788999999995       778999999999


Q ss_pred             EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +||+++++.+..+..+.....++|+|+|+.+
T Consensus       277 vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l  307 (342)
T d1yfqa_         277 CWNLQTRKKIKNFAKFNEDSVVKIACSDNIL  307 (342)
T ss_dssp             EEETTTTEEEEECCCCSSSEEEEEEECSSEE
T ss_pred             EEECCCCcEEEEecCCCCCEEEEEEeCCCEE
Confidence            9999999998888665566667788888765

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.42  E-value=8.8e-12  Score=71.34  Aligned_cols=96  Identities=19%  Similarity=0.181  Sum_probs=78.6

Q ss_pred             CcCCCeEEcCCCCEEE-EEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            8 YVSSPPAFSNDVKRLL-VCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~-~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      .... ++++|||++++ ++. ++.|++||+.+++.+..+..+. ....+++++++.      ..++++..+..+.+|+..
T Consensus        33 ~p~~-va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  104 (301)
T d1l0qa2          33 NPMG-AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGK------QVYVTNMASSTLSVIDTT  104 (301)
T ss_dssp             SEEE-EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSS------EEEEEETTTTEEEEEETT
T ss_pred             CceE-EEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccc------cccccccccceeeecccc
Confidence            3455 89999999875 455 7999999999998888777654 457899999985      244567778899999999


Q ss_pred             CCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           86 TPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +++....+..+.....+.++|+|+.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~dg~~~  130 (301)
T d1l0qa2         105 SNTVAGTVKTGKSPLGLALSPDGKKL  130 (301)
T ss_dssp             TTEEEEEEECSSSEEEEEECTTSSEE
T ss_pred             cceeeeeccccccceEEEeecCCCee
Confidence            99998888888888899999999865

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=1.2e-11  Score=71.71  Aligned_cols=99  Identities=11%  Similarity=0.109  Sum_probs=75.7

Q ss_pred             CCCcCCCeEEcCCCCEEE-EEc-CCeEEEEeCCCCceeeeccccCC-----ceEEEEEecCCCCccceeEEEEeee----
Q 033738            6 RSYVSSPPAFSNDVKRLL-VCT-SNTVSIFSTSTGLQISSLEGHTA-----PVTTVIVVPASTPATKILSYCWTAS----   74 (112)
Q Consensus         6 ~~~v~~~~~~~~~~~~l~-~~~-~~~v~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~----   74 (112)
                      ...+.. ++++|||++++ +++ ++.|.+||+.+++.+..+..+..     ....++++|++.       +++.+.    
T Consensus        33 ~~~~~~-i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-------~l~~~~~~~~  104 (337)
T d1pbyb_          33 GPTPMV-PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK-------TLAIYESPVR  104 (337)
T ss_dssp             TTCCCC-EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS-------EEEEEEEEEE
T ss_pred             CCCccE-EEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCc-------EEEEeecCCc
Confidence            344566 99999999875 555 79999999999987776654322     234789999985       332332    


Q ss_pred             --------cCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           75 --------LDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        75 --------~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                              .+..+.+||..+++....+..+..+..++|+|+|++++
T Consensus       105 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  150 (337)
T d1pbyb_         105 LELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY  150 (337)
T ss_dssp             ECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEE
T ss_pred             ceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEE
Confidence                    46789999999999988888877888899999998764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.38  E-value=4.2e-13  Score=81.20  Aligned_cols=98  Identities=9%  Similarity=-0.020  Sum_probs=68.8

Q ss_pred             CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee--ecc---ccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738            7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS--SLE---GHTAPVTTVIVVPASTPATKILSYCWTASLDETIK   80 (112)
Q Consensus         7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~--~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~   80 (112)
                      ..+.. ++|||||+++++++ |+.+++||+.+++...  .+.   .+.+.+.+.+|+|++.      .+++++..++.++
T Consensus        62 ~~~~~-vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~------~l~v~~~~~~~v~  134 (426)
T d1hzua2          62 YAVHI-SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR------YTIAGAYWPPQFA  134 (426)
T ss_dssp             SSEEE-EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTT------EEEEEEEESSEEE
T ss_pred             CCeeE-EEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCC------EEEEeecCCCeEE
Confidence            34666 99999999999988 8999999998876432  222   3444455666778885      2345667899999


Q ss_pred             EEeCCCCceEEEEecCC------------CEEEEEEcCCCcEe
Q 033738           81 YWDFSTPELLKTIDVKF------------PIFSMVRGKKGFAV  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~  111 (112)
                      +||..++.+......+.            ....+..++++..+
T Consensus       135 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~  177 (426)
T d1hzua2         135 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  177 (426)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEE
Confidence            99999988876665332            34455666666543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=3.6e-12  Score=77.49  Aligned_cols=83  Identities=13%  Similarity=0.091  Sum_probs=64.7

Q ss_pred             EEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce--EEEEecCC-
Q 033738           22 LLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL--LKTIDVKF-   97 (112)
Q Consensus        22 l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~--~~~~~~~~-   97 (112)
                      +++.+ ++.|.+||.++++.+..+..+ ..+..++|+||++       ++++++.|+.+++||+.+++.  +..++... 
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~-------~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~  106 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR-------YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE  106 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSC-------EEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCC-------EEEEEcCCCCEEEEEeeCCCceEEEEEecCCC
Confidence            46777 799999999999999988866 4589999999996       777889999999999987653  33343322 


Q ss_pred             ---CEEEEEEcCCCcEeC
Q 033738           98 ---PIFSMVRGKKGFAVF  112 (112)
Q Consensus        98 ---~v~~~~~~~~~~~~~  112 (112)
                         .+.++.|+|||+++|
T Consensus       107 ~~~~~~s~~~SpDG~~l~  124 (432)
T d1qksa2         107 ARSIETSKMEGWEDKYAI  124 (432)
T ss_dssp             EEEEEECCSTTCTTTEEE
T ss_pred             CCCeEEecccCCCCCEEE
Confidence               455567788998763

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=3.1e-12  Score=74.18  Aligned_cols=87  Identities=16%  Similarity=0.146  Sum_probs=68.3

Q ss_pred             CEEEEEc-CCeEEEEeCCCCceeeeccc--cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC
Q 033738           20 KRLLVCT-SNTVSIFSTSTGLQISSLEG--HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK   96 (112)
Q Consensus        20 ~~l~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~   96 (112)
                      +++++++ |+.|++||+++++.+..+..  +...+..++++|+++      .++++++.++.|++||+.+++.+..+..+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~------~l~v~~~~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR------IAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSS------EEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCC------EEEEEECCCCeEEEEECCCCcEEEEEecC
Confidence            4678888 89999999999988877754  334567899999995      23357778999999999999998877654


Q ss_pred             C------CEEEEEEcCCCcEeC
Q 033738           97 F------PIFSMVRGKKGFAVF  112 (112)
Q Consensus        97 ~------~v~~~~~~~~~~~~~  112 (112)
                      .      ....++|+|+++.++
T Consensus        76 ~~~~~~~~~~~v~~s~dg~~l~   97 (337)
T d1pbyb_          76 TPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEE
T ss_pred             CCcccccceeeEEEcCCCcEEE
Confidence            3      345788999998764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.34  E-value=4.1e-11  Score=68.48  Aligned_cols=81  Identities=11%  Similarity=0.155  Sum_probs=67.0

Q ss_pred             EEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEE
Q 033738           24 VCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSM  102 (112)
Q Consensus        24 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~  102 (112)
                      +.+ ++.|.+||+++++.+..++.. .....++++|+++      -+++++..++.|++||+.+++.+..+..+.....+
T Consensus         7 ~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~------~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~   79 (301)
T d1l0qa2           7 ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGT------KVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV   79 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS------EEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             EECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCC------EEEEEECCCCEEEEEECCCCceeeeeecccccccc
Confidence            444 799999999999888777654 4468899999995      12357778899999999999999999888888899


Q ss_pred             EEcCCCcEe
Q 033738          103 VRGKKGFAV  111 (112)
Q Consensus       103 ~~~~~~~~~  111 (112)
                      .|++++..+
T Consensus        80 ~~~~~~~~~   88 (301)
T d1l0qa2          80 AVSPDGKQV   88 (301)
T ss_dssp             EECTTSSEE
T ss_pred             ccccccccc
Confidence            999998765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=5.2e-11  Score=69.00  Aligned_cols=100  Identities=10%  Similarity=0.011  Sum_probs=69.6

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeec---cccCCceEEEEEecCCCCccceeEEEEeee-cCC
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSL---EGHTAPVTTVIVVPASTPATKILSYCWTAS-LDE   77 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~d~   77 (112)
                      .|.+.+.. ++|+|||++|++++  ++.|++|++........+   ......+..++|+|+++       +++.++ .++
T Consensus        34 ~~~~~v~~-la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~-------~l~v~~~~~~  105 (333)
T d1ri6a_          34 DVPGQVQP-MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQ-------FVFVGSYNAG  105 (333)
T ss_dssp             ECSSCCCC-EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSS-------EEEEEETTTT
T ss_pred             cCCCCEeE-EEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCC-------EEeecccCCC
Confidence            46678887 99999999986554  799999998764322222   22344567899999996       444555 577


Q ss_pred             cEEEEeCCCCceEEEEe--c-CCCEEEEEEcCCCcEe
Q 033738           78 TIKYWDFSTPELLKTID--V-KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        78 ~i~~~~~~~~~~~~~~~--~-~~~v~~~~~~~~~~~~  111 (112)
                      .+.+|+...........  . ...+.++.++|+++++
T Consensus       106 ~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_         106 NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred             ceeeeccccccceecccccCCCccceEEEeeecceee
Confidence            89999877665443332  2 2367788899998865

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.24  E-value=5.9e-11  Score=72.36  Aligned_cols=100  Identities=9%  Similarity=-0.056  Sum_probs=74.2

Q ss_pred             ccCCCCCcCCCeEEcCCCCEEEEEc----------CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEE
Q 033738            2 IRGGRSYVSSPPAFSNDVKRLLVCT----------SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW   71 (112)
Q Consensus         2 ~~~h~~~v~~~~~~~~~~~~l~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   71 (112)
                      +.+|...+.. ..|||||+.|+.++          ++.+.+||+.+++ +..+..+...+....|||++.       .++
T Consensus        57 ~~~~~~~i~~-~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~-------~ia  127 (470)
T d2bgra1          57 FDEFGHSIND-YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGH-------KLA  127 (470)
T ss_dssp             TTTSSSCCCE-EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTT-------CEE
T ss_pred             hhhccCccce-eEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcc-------eee
Confidence            3455667777 99999999998774          2578899999876 666777888899999999995       333


Q ss_pred             eeecCCcEEEEeCCCCceEEEEecC-------------------CCEEEEEEcCCCcEe
Q 033738           72 TASLDETIKYWDFSTPELLKTIDVK-------------------FPIFSMVRGKKGFAV  111 (112)
Q Consensus        72 ~~~~d~~i~~~~~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~~  111 (112)
                      . ..++.+++|+...+...+.....                   .....+.|+|||+.|
T Consensus       128 ~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~i  185 (470)
T d2bgra1         128 Y-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL  185 (470)
T ss_dssp             E-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE
T ss_pred             E-eecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcc
Confidence            4 35678999999888665443221                   123557899999876

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=5.9e-11  Score=68.79  Aligned_cols=84  Identities=8%  Similarity=0.123  Sum_probs=58.3

Q ss_pred             EEEc-CCeEEEEeCCCCceee--eccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE----EEec
Q 033738           23 LVCT-SNTVSIFSTSTGLQIS--SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK----TIDV   95 (112)
Q Consensus        23 ~~~~-~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~----~~~~   95 (112)
                      ++++ ++.|++|+++....+.  ....+.+.+..++|+|+++      .+++++..|+.|++|++..+....    ....
T Consensus         8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~------~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR------YLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS------EEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCC------EEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence            4555 8999999987643333  2235678889999999996      123455668999999987653322    2223


Q ss_pred             CCCEEEEEEcCCCcEeC
Q 033738           96 KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        96 ~~~v~~~~~~~~~~~~~  112 (112)
                      ...+..++|+|+|+++|
T Consensus        82 ~~~p~~l~~spDg~~l~   98 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVF   98 (333)
T ss_dssp             SSCCSEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCCEEe
Confidence            33677899999999874

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.21  E-value=6.8e-11  Score=68.63  Aligned_cols=84  Identities=10%  Similarity=-0.035  Sum_probs=68.1

Q ss_pred             CCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738            5 GRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF   84 (112)
Q Consensus         5 h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~   84 (112)
                      |...+.. ..+++++..++...++.+.+||..+++.+..+. ....+.+++|+|+++       ++++++.|+.|++||.
T Consensus       250 ~~~~~~~-~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~-------~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         250 LTELYFT-GLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGD-------KLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             CSSCEEE-EEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSS-------CEEEESBSSEEEEEET
T ss_pred             ccceeEE-EEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCC-------EEEEEeCCCcEEEEEC
Confidence            4555665 788888888877777889999999988776665 345688999999995       5668889999999999


Q ss_pred             CCCceEEEEecCC
Q 033738           85 STPELLKTIDVKF   97 (112)
Q Consensus        85 ~~~~~~~~~~~~~   97 (112)
                      ++++.+.+++.+.
T Consensus       321 ~t~~~i~~i~~p~  333 (346)
T d1jmxb_         321 DTLEKVKNIKLPG  333 (346)
T ss_dssp             TTTEEEEEEECSS
T ss_pred             ccCCEEEEEECCC
Confidence            9999998887643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.5e-10  Score=64.52  Aligned_cols=83  Identities=19%  Similarity=0.308  Sum_probs=64.1

Q ss_pred             EcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC-------
Q 033738           15 FSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST-------   86 (112)
Q Consensus        15 ~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-------   86 (112)
                      +++++..+++++ |+.|++||+++...+.....+...+..  +++++.       ++++++.|+.+++||+..       
T Consensus       184 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~-------~l~sg~~dg~i~iwd~~~~~~~~~~  254 (293)
T d1p22a2         184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNK-------RIVSGAYDGKIKVWDLVAALDPRAP  254 (293)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSS-------EEEEEETTSCEEEEEHHHHTSTTSC
T ss_pred             ccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccce-------EEEEEcCCCEEEEEECCCCcccccc
Confidence            444567888887 999999999998888888877777665  455653       677999999999998642       


Q ss_pred             --CceEEEEecCC-CEEEEEEcC
Q 033738           87 --PELLKTIDVKF-PIFSMVRGK  106 (112)
Q Consensus        87 --~~~~~~~~~~~-~v~~~~~~~  106 (112)
                        ..++..+..|. .|.+++|++
T Consensus       255 ~~~~~~~~~~~H~~~V~~v~~d~  277 (293)
T d1p22a2         255 AGTLCLRTLVEHSGRVFRLQFDE  277 (293)
T ss_dssp             TTTTEEEEECCCSSCCCCEEECS
T ss_pred             CCceeeEEecCCCCCEEEEEEcC
Confidence              34567777776 888998864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.12  E-value=1.6e-09  Score=63.79  Aligned_cols=98  Identities=10%  Similarity=0.073  Sum_probs=71.1

Q ss_pred             CCCCCcCCCeEEcCCCCEEEEEc------CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEee----
Q 033738            4 GGRSYVSSPPAFSNDVKRLLVCT------SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA----   73 (112)
Q Consensus         4 ~h~~~v~~~~~~~~~~~~l~~~~------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----   73 (112)
                      .+.+.+.. .+++|||+.++...      .+.+.+||..+++.+..+..+..  ..++|+||+.       +++.+    
T Consensus        18 ~~~~p~~~-~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~-------~l~va~~~~   87 (373)
T d2madh_          18 AADGPTND-EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGS-------EFALASTSF   87 (373)
T ss_pred             cCCCCccc-cccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCC-------EEEEEeecC
Confidence            45667776 99999999887653      26799999999988887765543  3789999995       33333    


Q ss_pred             ------ecCCcEEEEeCCCCceEEEEecCC-C-------EEEEEEcCCCcEe
Q 033738           74 ------SLDETIKYWDFSTPELLKTIDVKF-P-------IFSMVRGKKGFAV  111 (112)
Q Consensus        74 ------~~d~~i~~~~~~~~~~~~~~~~~~-~-------v~~~~~~~~~~~~  111 (112)
                            ..++.+.+||..+++.+..+..+. .       ...+.|+++++.+
T Consensus        88 ~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~  139 (373)
T d2madh_          88 SRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL  139 (373)
T ss_pred             CcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcE
Confidence                  345789999999998887776543 2       2446777777654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.09  E-value=2.9e-10  Score=69.27  Aligned_cols=91  Identities=11%  Similarity=0.173  Sum_probs=67.2

Q ss_pred             eEEcCCCCEEEEEcCCeEEEEeCCCCceeeec-----cccCCceEEEEEecCCCCccceeEEEEeee---------cCCc
Q 033738           13 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSL-----EGHTAPVTTVIVVPASTPATKILSYCWTAS---------LDET   78 (112)
Q Consensus        13 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~d~~   78 (112)
                      +.|.+|+++++ -.++.+.+||+.+++....+     ..+...+.+..||||+.       +++...         .++.
T Consensus        22 ~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~-------~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          22 LRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-------FILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS-------EEEEEEEEEECSSSCEEEE
T ss_pred             CEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCC-------EEEEEECCcceeeeccCce
Confidence            88999998665 34678999999998765433     33456789999999995       333432         3567


Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +.+||+.+++..........+..+.|+|||+.+
T Consensus        94 ~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~i  126 (470)
T d2bgra1          94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKL  126 (470)
T ss_dssp             EEEEETTTTEECCSSCCCTTEEEEEECSSTTCE
T ss_pred             EEEEECCCCcccccccCCccccccccccCccee
Confidence            899999988754433334489999999999876

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.00  E-value=4.5e-09  Score=61.31  Aligned_cols=90  Identities=14%  Similarity=0.196  Sum_probs=66.8

Q ss_pred             eEEcCCCCEEEEEc-C----------CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738           13 PAFSNDVKRLLVCT-S----------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~----------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      +++++++..++... +          ..+.+||..+++.+..+.. ...+.+++|+|+++   .+  +++++..|+.|++
T Consensus       254 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~---~~--l~v~~~~d~~i~v  327 (355)
T d2bbkh_         254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEK---PL--LYALSTGDKTLYI  327 (355)
T ss_dssp             EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSS---CE--EEEEETTTTEEEE
T ss_pred             EEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCC---eE--EEEEECCCCEEEE
Confidence            78899998877553 2          3799999999887777653 34578999999984   11  3457778999999


Q ss_pred             EeCCCCceEEEEecCC-CEEEEEEcCCC
Q 033738           82 WDFSTPELLKTIDVKF-PIFSMVRGKKG  108 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~  108 (112)
                      ||.++++.+.++.... ....+.+.++|
T Consensus       328 ~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         328 HDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             EECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            9999999999987544 44555555443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.99  E-value=1.7e-08  Score=59.32  Aligned_cols=89  Identities=9%  Similarity=0.004  Sum_probs=66.2

Q ss_pred             eEEcCCCCEEEE----------Ec-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738           13 PAFSNDVKRLLV----------CT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus        13 ~~~~~~~~~l~~----------~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      +.+++++..++.          .. ++.+.+||..+++.+..+. +...+..++|+||++   .+  ++++++.|+.+++
T Consensus       272 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~---~~--l~vt~~~d~~v~v  345 (373)
T d2madh_         272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGG---PD--LYALSAGTEVLHI  345 (373)
T ss_pred             eEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCC---EE--EEEEeCCCCeEEE
Confidence            456666655443          23 4689999999998777665 456678999999985   11  3568889999999


Q ss_pred             EeCCCCceEEEEecCC-CEEEEEEcCC
Q 033738           82 WDFSTPELLKTIDVKF-PIFSMVRGKK  107 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~v~~~~~~~~  107 (112)
                      ||..+++.+..+.... ..+.+++.++
T Consensus       346 ~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         346 YDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EECCCCCEEEEECCCCCCCcEEEEecC
Confidence            9999999999998653 6666666544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.95  E-value=5.2e-09  Score=61.02  Aligned_cols=93  Identities=14%  Similarity=0.110  Sum_probs=66.8

Q ss_pred             eEEcCCCCEEEEEc------CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEe--------eecCCc
Q 033738           13 PAFSNDVKRLLVCT------SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT--------ASLDET   78 (112)
Q Consensus        13 ~~~~~~~~~l~~~~------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~~~d~~   78 (112)
                      .+.+||++.++...      +..+.+||..+++.+..+..+..  ..++|+|+++   .+  ++++        +..++.
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~---~l--~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGS---FI--AHASTVFSRIARGERTDY   79 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSS---CE--EEEEEEEEETTEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCC---EE--EEEeCCCccccccCCCCE
Confidence            35689999887653      35799999999988887765544  3689999995   22  2222        345789


Q ss_pred             EEEEeCCCCceEEEEecCC--------CEEEEEEcCCCcEeC
Q 033738           79 IKYWDFSTPELLKTIDVKF--------PIFSMVRGKKGFAVF  112 (112)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~  112 (112)
                      |++||..+++.+..+..+.        ....+.|+|+|+.++
T Consensus        80 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~  121 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL  121 (355)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEE
T ss_pred             EEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeE
Confidence            9999999998887765432        234578999988653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.75  E-value=4.3e-08  Score=57.81  Aligned_cols=92  Identities=9%  Similarity=-0.033  Sum_probs=63.8

Q ss_pred             eEEcCCCCEEEEEc-----------CCeEEEEeCCCCceeeeccccC-------CceEEEEEecCCCCccceeEEEEeee
Q 033738           13 PAFSNDVKRLLVCT-----------SNTVSIFSTSTGLQISSLEGHT-------APVTTVIVVPASTPATKILSYCWTAS   74 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-----------~~~v~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~   74 (112)
                      +.|+|||+.++..+           ++.|.+||..+++....+..+.       .....++|+||++   +   ++++..
T Consensus        70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk---~---l~va~~  143 (368)
T d1mdah_          70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA---C---LLFFLF  143 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS---C---EEEEEC
T ss_pred             ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC---E---EEEEeC
Confidence            78999999888653           4679999999988776654322       1224689999995   2   223444


Q ss_pred             cCCcEEEEeCCCCceEEEEecCC--------CEEEEEEcCCCcE
Q 033738           75 LDETIKYWDFSTPELLKTIDVKF--------PIFSMVRGKKGFA  110 (112)
Q Consensus        75 ~d~~i~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~  110 (112)
                      .++.+.+||+.+++.+..+..+.        ....+.++++|..
T Consensus       144 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~  187 (368)
T d1mdah_         144 GSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             SSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSC
T ss_pred             CCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCE
Confidence            67999999999998887776543        2233556666654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.73  E-value=1.6e-07  Score=53.01  Aligned_cols=95  Identities=8%  Similarity=0.058  Sum_probs=64.5

Q ss_pred             eEEcCC--CCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee-cC--CcEEEEeCCCC
Q 033738           13 PAFSND--VKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS-LD--ETIKYWDFSTP   87 (112)
Q Consensus        13 ~~~~~~--~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~d--~~i~~~~~~~~   87 (112)
                      +.++||  |+.++..+++.|.+.|+..++ ...+..+.+.....+||||++   +++ +...-. .+  ..+.+++...+
T Consensus         4 ~~~sPdi~G~~v~f~~~~dl~~~d~~~g~-~~~Lt~~~~~~~~p~~SPDG~---~ia-f~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVCCDDLWEHDLKSGS-TRKIVSNLGVINNARFFPDGR---KIA-IRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             CCEEEEEETTEEEEEETTEEEEEETTTCC-EEEEECSSSEEEEEEECTTSS---EEE-EEEEESTTCCEEEEEEEETTTT
T ss_pred             cccCCCCCCCEEEEEeCCcEEEEECCCCC-EEEEecCCCcccCEEECCCCC---EEE-EEEeeCCCCCceEEEEEEecCC
Confidence            457899  999998888889999999776 556666777788899999994   333 222211 22  24777787777


Q ss_pred             ceEEEEecC-------CCEEEEEEcCCCcEeC
Q 033738           88 ELLKTIDVK-------FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        88 ~~~~~~~~~-------~~v~~~~~~~~~~~~~  112 (112)
                      +........       .......|+|+|+.++
T Consensus        79 ~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~  110 (281)
T d1k32a2          79 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLII  110 (281)
T ss_dssp             EEEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred             ceEEeeecCCCccCccccccccccCCCCCEEE
Confidence            654332211       1456778999998763

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.65  E-value=6e-08  Score=58.99  Aligned_cols=95  Identities=9%  Similarity=-0.051  Sum_probs=68.7

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecC-------------
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLD-------------   76 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d-------------   76 (112)
                      ...+|||++|+...  ++.|.++|+++++....+. ........++++|+++   ..  |++..+.+             
T Consensus        77 t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~---t~--YV~~~~~~~v~~~~dg~~~~~  151 (441)
T d1qnia2          77 TDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPK---TN--YVFCNAEFVIPQPNDGTDFSL  151 (441)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSB---CC--EEEEEECSCEESSCSSSCCCG
T ss_pred             ecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCC---EE--EEEeccCCcccccCccccccc
Confidence            34578999887765  7999999999987666554 3456678999999984   11  33333322             


Q ss_pred             ----CcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           77 ----ETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        77 ----~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                          ..+..+|..+.+...++..+.....+.++|+|+++|
T Consensus       152 ~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~  191 (441)
T d1qnia2         152 DNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYAT  191 (441)
T ss_dssp             GGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEE
T ss_pred             ccccceEEeecCccceeeEEEecCCCccceEECCCCCEEE
Confidence                123557888888888887777788899999999875

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=2.9e-07  Score=51.83  Aligned_cols=88  Identities=11%  Similarity=0.067  Sum_probs=57.4

Q ss_pred             eEEcCCCCEEEEEc-C-C--eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc
Q 033738           13 PAFSNDVKRLLVCT-S-N--TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE   88 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~-~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~   88 (112)
                      ..|+|+++.++..+ + +  .+.+.+...+. . .............|+|+|+   +|+ +...-+....++++++..+.
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~p~~SPDG~---~i~-f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-V-QVLSSTFLDETPSLAPNGT---MVI-YSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCC-E-EECCCSSSCEEEEECTTSS---EEE-EEEEETTEEEEEEEETTSCC
T ss_pred             cccccccceeEEEeecCCceeeeEeeccccc-c-eEeecCccccceEECCCCC---EEE-EEEcCCCCcEEEEEECCCCC
Confidence            68999999988776 3 3  45555555443 2 2333445567789999994   444 44344445678899998666


Q ss_pred             eEEEEecCCCEEEEEEcC
Q 033738           89 LLKTIDVKFPIFSMVRGK  106 (112)
Q Consensus        89 ~~~~~~~~~~v~~~~~~~  106 (112)
                      ..........+...+|+|
T Consensus       250 ~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         250 KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEECCCSSSEEEEEEECC
T ss_pred             EEEEeCCCCcEEeEEeCC
Confidence            544434444788899998

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.61  E-value=2.7e-07  Score=54.30  Aligned_cols=86  Identities=10%  Similarity=0.102  Sum_probs=64.3

Q ss_pred             eEEcCCCCEEEEEc--C--------CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738           13 PAFSNDVKRLLVCT--S--------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~--------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      +++++++..++...  +        ..+.+||..+++.+..+.. ...+..++|+|+++   .+  ++++...++.|++|
T Consensus       269 ~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~---~~--ly~s~~~~~~v~v~  342 (368)
T d1mdah_         269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGA---SD--NYANSAGTEVLDIY  342 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSS---CE--EEEEETTTTEEEEE
T ss_pred             EEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCC---EE--EEEEeCCCCeEEEE
Confidence            78889988776542  1        3689999999987777663 35678899999984   11  34567788999999


Q ss_pred             eCCCCceEEEEecCCCEEEEEE
Q 033738           83 DFSTPELLKTIDVKFPIFSMVR  104 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~  104 (112)
                      |..+++.+..+..+..-..+.+
T Consensus       343 D~~tgk~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         343 DAASDQDQSSVELDKGPESLSV  364 (368)
T ss_dssp             ESSSCEEEEECCCCSCCCEEEC
T ss_pred             ECCCCCEEEEEECCCCCCEEEE
Confidence            9999999998886654444544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.51  E-value=2.6e-06  Score=50.47  Aligned_cols=97  Identities=11%  Similarity=0.035  Sum_probs=63.6

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCC-Ccee--eec--cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTST-GLQI--SSL--EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~-~~~~--~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      +.+ +.|+|||++++..+  ...|.+|+... +...  ...  .........++|+|+++      .++++...++.|.+
T Consensus       147 ~h~-v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~------~~yv~~e~~~~V~v  219 (365)
T d1jofa_         147 IHG-MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN------YLYALMEAGNRICE  219 (365)
T ss_dssp             EEE-EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS------EEEEEETTTTEEEE
T ss_pred             ceE-EEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCc------eEEEeccCCCEEEE
Confidence            455 89999999988886  47888887643 3221  111  12344568899999996      23456677899999


Q ss_pred             EeCCCCceE--EE---Eec---------------CCCEEEEEEcCCCcEeC
Q 033738           82 WDFSTPELL--KT---IDV---------------KFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~~--~~---~~~---------------~~~v~~~~~~~~~~~~~  112 (112)
                      |++..+...  ..   ...               ......+.++|+|+++|
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ly  270 (365)
T d1jofa_         220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEE
Confidence            998765322  11   110               01356789999999875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.19  E-value=7e-05  Score=42.93  Aligned_cols=93  Identities=6%  Similarity=-0.020  Sum_probs=63.4

Q ss_pred             cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC-
Q 033738            9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST-   86 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-   86 (112)
                      +.. ++++|||+++++.. ++.|..++.. ++ ...+......+.+++++++++       ++++...++.+..++... 
T Consensus        30 ~e~-iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~-------l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          30 LEN-LASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGD-------LVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             EEE-EEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSC-------EEEEEECTTSCEEEEEECT
T ss_pred             cCC-EEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCC-------eEEEecCCceEEEEEeccc
Confidence            445 89999999888887 7999888865 33 333444556789999999995       566777777777776543 


Q ss_pred             -CceEEEEec--CCCEEEEEEcCCCcEe
Q 033738           87 -PELLKTIDV--KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        87 -~~~~~~~~~--~~~v~~~~~~~~~~~~  111 (112)
                       +........  ......+.+.++|+++
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~  127 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDTQYL  127 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEE
T ss_pred             ccceeeccccCCccccceeEEccCCCEE
Confidence             322222222  2367788888887654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=3.9e-05  Score=42.82  Aligned_cols=78  Identities=8%  Similarity=-0.002  Sum_probs=53.3

Q ss_pred             eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCC
Q 033738           29 TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKG  108 (112)
Q Consensus        29 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  108 (112)
                      .|.+.|.+.. ....+......+..-+|||||+   +|+ +.........+.+.+...+................|+|+|
T Consensus        20 ~l~i~d~dG~-~~~~l~~~~~~~~sP~wSPDGk---~IA-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg   94 (269)
T d2hqsa1          20 ELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGS---KLA-YVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG   94 (269)
T ss_dssp             EEEEEETTSC-SCEEEEEESSCEEEEEECTTSS---EEE-EEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTS
T ss_pred             EEEEEcCCCC-CcEEEecCCCceeeeEECCCCC---EEE-EEEeeccCcceeeeecccCceeEEeeeecccccceecCCC
Confidence            5888887744 4555555566778899999994   443 4333334456777787777665555555578888999999


Q ss_pred             cEe
Q 033738          109 FAV  111 (112)
Q Consensus       109 ~~~  111 (112)
                      +.+
T Consensus        95 ~~i   97 (269)
T d2hqsa1          95 SKL   97 (269)
T ss_dssp             SEE
T ss_pred             Cee
Confidence            865

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3.1e-05  Score=47.27  Aligned_cols=90  Identities=13%  Similarity=0.105  Sum_probs=58.9

Q ss_pred             eEEcCCCCEEEEEc----------CCeEEEEeCCCCceeeec---cccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738           13 PAFSNDVKRLLVCT----------SNTVSIFSTSTGLQISSL---EGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus        13 ~~~~~~~~~l~~~~----------~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      ..+|||++.++...          .+...++|+.++.. ..+   ......+....|||++.   .++    -. .++.+
T Consensus        66 ~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~-~~l~~~~~~~~~l~~~~wSPDG~---~ia----fv-~~~nl  136 (465)
T d1xfda1          66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ---QLI----FI-FENNI  136 (465)
T ss_dssp             EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT---CEE----EE-ETTEE
T ss_pred             eEECCCCCeEEEEEcccceeEeeccccEEEEEccCCce-eeccCccCCccccceeeeccCCc---eEE----EE-ecceE
Confidence            67999999887653          25788999988753 333   22334455678999995   332    22 35678


Q ss_pred             EEEeCCCCceEEEEecCC--C-----------------EEEEEEcCCCcEe
Q 033738           80 KYWDFSTPELLKTIDVKF--P-----------------IFSMVRGKKGFAV  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~--~-----------------v~~~~~~~~~~~~  111 (112)
                      ++.+...+..++......  .                 -.++-|+|||+.|
T Consensus       137 ~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~i  187 (465)
T d1xfda1         137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL  187 (465)
T ss_dssp             EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred             EEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeE
Confidence            888887766555443221  1                 2467799999876

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.05  E-value=0.00014  Score=42.01  Aligned_cols=93  Identities=12%  Similarity=0.074  Sum_probs=62.1

Q ss_pred             eEEcCCCC----EEEEE-c-CCeEEEEeCCCCceee------eccc-cCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738           13 PAFSNDVK----RLLVC-T-SNTVSIFSTSTGLQIS------SLEG-HTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus        13 ~~~~~~~~----~l~~~-~-~~~v~~~~~~~~~~~~------~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      ++|+|++.    .|+.+ + .+.|..+++.....+.      .+.. ..+..-.+++..+++       ++++....+.|
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-------lyVa~~~~g~I  249 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-------LLVANWGSSHI  249 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-------EEEEEETTTEE
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-------EEEEEcCCCEE
Confidence            67777654    44444 4 6888888865432221      1221 122345788888885       55676778899


Q ss_pred             EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738           80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF  112 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  112 (112)
                      ..||.+.+.....+..+. ...+++|.|+++.||
T Consensus       250 ~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~ly  283 (314)
T d1pjxa_         250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred             EEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEE
Confidence            999988787777777654 788999999987664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.98  E-value=0.00029  Score=40.74  Aligned_cols=91  Identities=10%  Similarity=-0.050  Sum_probs=62.9

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCC-ceee----ec---cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTG-LQIS----SL---EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~-~~~~----~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      ++|+||++.|+.+.  .+.|..|+++.. ....    ..   .......-.+++.++++       ++++....+.|..+
T Consensus       182 ia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-------l~Va~~~~g~V~~~  254 (319)
T d2dg1a1         182 IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-------LYVAMYGQGRVLVF  254 (319)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-------EEEEEETTTEEEEE
T ss_pred             eeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-------EEEEEcCCCEEEEE
Confidence            88999998776664  689999987532 1111    11   11112245788999985       66677888999999


Q ss_pred             eCCCCceEEEEecCC-------CEEEEEEcCCCcEe
Q 033738           83 DFSTPELLKTIDVKF-------PIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~  111 (112)
                      |. +|+.+..+..+.       .+.+++|.+++..+
T Consensus       255 ~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~  289 (319)
T d2dg1a1         255 NK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQL  289 (319)
T ss_dssp             CT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred             CC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEE
Confidence            95 688888876542       46788888877654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.98  E-value=0.00025  Score=39.76  Aligned_cols=95  Identities=11%  Similarity=-0.044  Sum_probs=63.2

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      .... ++++++|+.+++.. ++.+..++.+.................+++.+++.       ++++....+.+..++...
T Consensus       141 ~p~~-i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-------l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         141 DPDG-VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-------VYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             SCCE-EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-------EEEEETTTTEEEEECTTC
T ss_pred             Ccce-eeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeee-------eeeeecCCCEEEEEeCCC
Confidence            3445 88899998777766 78899999875433322223344567899999885       666777788888887654


Q ss_pred             CceEEEEecC--CCEEEEEEcCCCcEe
Q 033738           87 PELLKTIDVK--FPIFSMVRGKKGFAV  111 (112)
Q Consensus        87 ~~~~~~~~~~--~~v~~~~~~~~~~~~  111 (112)
                      ... ......  .....++++++|+.+
T Consensus       213 ~~~-~~~~~~~~~~P~~i~~d~~g~l~  238 (260)
T d1rwia_         213 TTS-TVLPFTGLNTPLAVAVDSDRTVY  238 (260)
T ss_dssp             SCC-EECCCCSCCCEEEEEECTTCCEE
T ss_pred             CeE-EEEccCCCCCeEEEEEeCCCCEE
Confidence            332 232222  257789999988753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.97  E-value=3.2e-05  Score=46.98  Aligned_cols=83  Identities=6%  Similarity=-0.043  Sum_probs=56.7

Q ss_pred             EEEc-CCeEEEEeCCCCceeeeccc------------------------------cCCceEEEEEecCCCCccceeEEEE
Q 033738           23 LVCT-SNTVSIFSTSTGLQISSLEG------------------------------HTAPVTTVIVVPASTPATKILSYCW   71 (112)
Q Consensus        23 ~~~~-~~~v~~~~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~   71 (112)
                      ++++ +|.|++|++.+++.+..+..                              |.-.......+|||+      -+++
T Consensus        15 ~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr------~lfV   88 (441)
T d1qnia2          15 WSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGK------YLFI   88 (441)
T ss_dssp             EECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEE------EEEE
T ss_pred             EeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCC------EEEE
Confidence            3444 79999999988876554421                              111122333467884      1235


Q ss_pred             eeecCCcEEEEeCCCCceEEEEec--CCCEEEEEEcCCCcEe
Q 033738           72 TASLDETIKYWDFSTPELLKTIDV--KFPIFSMVRGKKGFAV  111 (112)
Q Consensus        72 ~~~~d~~i~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~  111 (112)
                      +...+.+|.++|+++++....+..  ......++|+|+|+..
T Consensus        89 ~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~  130 (441)
T d1qnia2          89 NDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTN  130 (441)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCC
T ss_pred             EcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEE
Confidence            666788999999999988877664  3488899999999854

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.96  E-value=0.00029  Score=39.87  Aligned_cols=94  Identities=12%  Similarity=0.179  Sum_probs=64.0

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeee-cCCcEEEEe
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTAS-LDETIKYWD   83 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~   83 (112)
                      .... +++.++++.+++.. .+.|++|+.. ++.+..+.  +.......+++.++++       ++++-. .++.|.+++
T Consensus       158 ~~~~-i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~-------i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         158 FPNG-VVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGE-------ILIADNHNNFNLTIFT  228 (279)
T ss_dssp             SEEE-EEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCC-------EEEEECSSSCEEEEEC
T ss_pred             ccce-eeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCe-------EEEEECCCCcEEEEEC
Confidence            3444 67788887776666 6899999875 55555553  2334467899999985       444543 456799998


Q ss_pred             CCCCceEEEEecCC---CEEEEEEcCCCcEe
Q 033738           84 FSTPELLKTIDVKF---PIFSMVRGKKGFAV  111 (112)
Q Consensus        84 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~~  111 (112)
                      . +|+.+..+....   ....+++.|+|.++
T Consensus       229 ~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~  258 (279)
T d1q7fa_         229 Q-DGQLISALESKVKHAQCFDVALMDDGSVV  258 (279)
T ss_dssp             T-TSCEEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred             C-CCCEEEEEeCCCCCCCEeEEEEeCCCcEE
Confidence            5 587777665432   57889999998754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.78  E-value=0.0002  Score=40.13  Aligned_cols=94  Identities=12%  Similarity=-0.087  Sum_probs=55.6

Q ss_pred             CCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738           10 SSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP   87 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~   87 (112)
                      .. ++++++|+..++..  .+.+..++...................+++++++.       ++++....+.+++++-.++
T Consensus        17 ~~-vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~-------i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          17 SG-VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-------VYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             EE-EEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCC-------EEEEETTTEEEEECTTCSC
T ss_pred             CE-EEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCC-------EEEeeeeeceeeeeeeccc
Confidence            44 78999999777654  47777776554332222222223346788999885       5556666667776665544


Q ss_pred             ceEEEEecCCCEEEEEEcCCCcEe
Q 033738           88 ELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        88 ~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ..+...........+++.++|+++
T Consensus        89 ~~~~~~~~~~~p~~iavd~~g~i~  112 (260)
T d1rwia_          89 QTVLPFDGLNYPEGLAVDTQGAVY  112 (260)
T ss_dssp             CEECCCCSCCSEEEEEECTTCCEE
T ss_pred             eeeeeeeeeeecccccccccceeE
Confidence            443333333467888888888654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.68  E-value=0.00086  Score=39.42  Aligned_cols=93  Identities=9%  Similarity=0.009  Sum_probs=53.8

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceee-----ecc--------------ccCCceEEEEEecCCCCccceeEEEE
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQIS-----SLE--------------GHTAPVTTVIVVPASTPATKILSYCW   71 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~-----~~~--------------~~~~~v~~~~~~~~~~~~~~~~~~~~   71 (112)
                      +.|+|++++++...  ++.|.+|+.+......     ...              ........+.++|+++       +++
T Consensus       198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~-------~ly  270 (365)
T d1jofa_         198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK-------YMF  270 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS-------EEE
T ss_pred             EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCC-------EEE
Confidence            78999999887765  6999999986543211     110              1112345788999995       332


Q ss_pred             eee--cC----CcEEEEeCCC-CceEEEE---e---cCCCEEEEEEcC-CCcEeC
Q 033738           72 TAS--LD----ETIKYWDFST-PELLKTI---D---VKFPIFSMVRGK-KGFAVF  112 (112)
Q Consensus        72 ~~~--~d----~~i~~~~~~~-~~~~~~~---~---~~~~v~~~~~~~-~~~~~~  112 (112)
                      ++.  .+    ..+..|++.. +......   .   .......++++| +|+++|
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~  325 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMA  325 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEE
T ss_pred             EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEE
Confidence            332  22    2366676654 2221111   1   122567788888 788764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.9e-05  Score=47.38  Aligned_cols=94  Identities=13%  Similarity=0.066  Sum_probs=60.7

Q ss_pred             eEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccc---cCCceEEEEEecCCCCccceeEEEEee-------ecCCcEEEE
Q 033738           13 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEG---HTAPVTTVIVVPASTPATKILSYCWTA-------SLDETIKYW   82 (112)
Q Consensus        13 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~d~~i~~~   82 (112)
                      ..|.+++.++....++.+.+||+.+++....+..   ....+....+|||++   .++  +.+.       +..+.+.++
T Consensus        22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~---~vl--~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE---YAL--FSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS---EEE--EEESCCCCSSSCCCSEEEEE
T ss_pred             CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCC---eEE--EEEcccceeEeeccccEEEE
Confidence            6788988877655578999999987754322222   223456778999995   222  1111       234678899


Q ss_pred             eCCCCceEEEEecC---CCEEEEEEcCCCcEe
Q 033738           83 DFSTPELLKTIDVK---FPIFSMVRGKKGFAV  111 (112)
Q Consensus        83 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~  111 (112)
                      |+.++.........   ..+....|+|+|+.+
T Consensus        97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~i  128 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQL  128 (465)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCE
T ss_pred             EccCCceeeccCccCCccccceeeeccCCceE
Confidence            99988654332221   256668999999865

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.61  E-value=0.0014  Score=37.45  Aligned_cols=92  Identities=9%  Similarity=-0.023  Sum_probs=64.5

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCC--c----e--eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTG--L----Q--ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW   82 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~--~----~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~   82 (112)
                      +.|+++++.++.+.  .+.|..++++..  .    .  ........+....+++..++.       +.++.-..+.|..|
T Consensus       153 ~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-------lWva~~~~g~V~~~  225 (295)
T d2ghsa1         153 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-------IWNARWGEGAVDRY  225 (295)
T ss_dssp             EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-------EEEEEETTTEEEEE
T ss_pred             eeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-------EEeeeeCCCceEEe
Confidence            78999998776664  588988887431  1    1  112223344567888888885       55566667889999


Q ss_pred             eCCCCceEEEEecCC-CEEEEEEc-CCCcEeC
Q 033738           83 DFSTPELLKTIDVKF-PIFSMVRG-KKGFAVF  112 (112)
Q Consensus        83 ~~~~~~~~~~~~~~~-~v~~~~~~-~~~~~~~  112 (112)
                      |. +|+.+..+..+. .+++++|- ++.+.||
T Consensus       226 dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         226 DT-DGNHIARYEVPGKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             CT-TCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             cC-CCcEeeEecCCCCceEEEEEeCCCCCEEE
Confidence            95 588888888875 78999995 6666654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.58  E-value=0.0016  Score=37.48  Aligned_cols=94  Identities=14%  Similarity=0.006  Sum_probs=59.0

Q ss_pred             CCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec----CCcEEEEeC
Q 033738           10 SSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL----DETIKYWDF   84 (112)
Q Consensus        10 ~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~~~~~   84 (112)
                      .. ++|.++|++.++-. .+.|..++.+.++....+.........+++.+++.       ++++...    .+.+...+.
T Consensus        43 EG-~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-------l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          43 EG-LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-------LFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             EE-EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-------EEEEECTTSSSCCEEEEECT
T ss_pred             Ee-CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-------EEEEecCCCccceeEEEEcC
Confidence            44 78999998655554 78999999876654444444555678999999985       3334322    233555555


Q ss_pred             CCCceEEEEecC---CCEEEEEEcCCCcEe
Q 033738           85 STPELLKTIDVK---FPIFSMVRGKKGFAV  111 (112)
Q Consensus        85 ~~~~~~~~~~~~---~~v~~~~~~~~~~~~  111 (112)
                      ..+.........   .....+++.++|++.
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~  144 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFY  144 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEE
T ss_pred             CCceeeeeccCCCcccCCcceeEEecccee
Confidence            544443333221   256778888888753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.57  E-value=0.00073  Score=38.99  Aligned_cols=67  Identities=12%  Similarity=0.188  Sum_probs=50.3

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      +++.++|+..++.. .+.|.+||.+.++....+........+++|.|+++      .++++...++.|...+..
T Consensus       231 iavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~------~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK------TIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS------EEEEEETTTTEEEEEECS
T ss_pred             eEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCC------EEEEEECCCCcEEEEECC
Confidence            78888998777665 79999999887765555555555678999999875      345577777888887764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.12  E-value=0.0042  Score=35.30  Aligned_cols=64  Identities=14%  Similarity=-0.026  Sum_probs=44.3

Q ss_pred             ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           39 LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        39 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      +.+..+.. ...+..++++|+++       ++++...+++|+.++.. ++..........+..++|.++|+.+
T Consensus        19 ~v~~~~p~-~~~~e~iAv~pdG~-------l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~   82 (302)
T d2p4oa1          19 KIITSFPV-NTFLENLASAPDGT-------IFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLV   82 (302)
T ss_dssp             EEEEEECT-TCCEEEEEECTTSC-------EEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEE
T ss_pred             cEEEECCC-CCCcCCEEECCCCC-------EEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeE
Confidence            33344432 23567899999995       66788888889888855 4444444445588899999998854

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.11  E-value=0.0064  Score=34.17  Aligned_cols=90  Identities=14%  Similarity=0.145  Sum_probs=60.7

Q ss_pred             eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738           13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL   89 (112)
Q Consensus        13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~   89 (112)
                      +++.++|+.+++.. .+.+.+++.+ ++.+..+.  .+......+++.+++.       ++++....+.|+++|.. |+.
T Consensus       119 ~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~-------i~v~d~~~~~V~~~d~~-G~~  189 (279)
T d1q7fa_         119 VTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-------IFISDNRAHCVKVFNYE-GQY  189 (279)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-------EEEEEGGGTEEEEEETT-CCE
T ss_pred             eccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecccee-------EEeeeccccceeeeecC-Cce
Confidence            66777787776666 5777777754 44444432  2344567888888873       56677778899999965 666


Q ss_pred             EEEEecCC---CEEEEEEcCCCcEe
Q 033738           90 LKTIDVKF---PIFSMVRGKKGFAV  111 (112)
Q Consensus        90 ~~~~~~~~---~v~~~~~~~~~~~~  111 (112)
                      +..+....   ....+++.++|+.+
T Consensus       190 ~~~~g~~g~~~~P~giavD~~G~i~  214 (279)
T d1q7fa_         190 LRQIGGEGITNYPIGVGINSNGEIL  214 (279)
T ss_dssp             EEEESCTTTSCSEEEEEECTTCCEE
T ss_pred             eeeecccccccCCcccccccCCeEE
Confidence            66664322   56778888888754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.98  E-value=0.0015  Score=36.16  Aligned_cols=36  Identities=11%  Similarity=-0.087  Sum_probs=28.4

Q ss_pred             CCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738           76 DETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV  111 (112)
Q Consensus        76 d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  111 (112)
                      ++.|.+.|+..++..+....+......+|+|||+.|
T Consensus        20 ~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~i   55 (281)
T d1k32a2          20 CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKI   55 (281)
T ss_dssp             TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEE
T ss_pred             CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEE
Confidence            456888899988876555555688889999999876

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.92  E-value=0.013  Score=35.53  Aligned_cols=90  Identities=13%  Similarity=0.011  Sum_probs=61.1

Q ss_pred             CCCEEEEEc--CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecC------------------
Q 033738           18 DVKRLLVCT--SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLD------------------   76 (112)
Q Consensus        18 ~~~~l~~~~--~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d------------------   76 (112)
                      ||+++....  +..|.+.|+++.+....+. ........++.+++.+    - .|++..+..                  
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~----T-~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR----S-NYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB----C-SEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCC----e-EEEEccCccccccCCCCccccchhhcc
Confidence            788888776  6999999999887544332 2334456666655442    1 144454432                  


Q ss_pred             CcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           77 ETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      +.+..+|..+.+....+........+.++++|+++|
T Consensus       173 ~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af  208 (459)
T d1fwxa2         173 NVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAF  208 (459)
T ss_dssp             EEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEE
T ss_pred             eEEEEEecCCceEEEEeeeCCChhccccCCCCCEEE
Confidence            236678998888888877777777889999998865

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.016  Score=32.46  Aligned_cols=97  Identities=11%  Similarity=0.057  Sum_probs=62.5

Q ss_pred             cCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738            9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST   86 (112)
Q Consensus         9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~   86 (112)
                      +.. +++++.++.++...  ++.|+..+++.......+......+..+++...+.      .++.+....+.|.+.++..
T Consensus        38 ~~~-ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~------~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          38 IIG-LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGR------TIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEE-EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTT------EEEEEETTTTEEEEEETTS
T ss_pred             EEE-EEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCC------eEEEeccCCCEEEEEecCC
Confidence            344 77787788887765  58888888876544444433335578888876553      2444556677899988875


Q ss_pred             CceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738           87 PELLKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        87 ~~~~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      ..+....... .....+++.|...++|
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly  137 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLY  137 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEE
T ss_pred             ceEEEEecccccCCcEEEEecccCcEE
Confidence            5443333332 3677888888776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.62  E-value=0.02  Score=32.53  Aligned_cols=88  Identities=10%  Similarity=-0.022  Sum_probs=59.4

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL   90 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~   90 (112)
                      ..|++.+..|+...  .+.|..||.++++. ..+. ....+.++++.+++.       ++++ +. ..+..+|..+++..
T Consensus        23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~-~~~~~~~i~~~~dg~-------l~va-~~-~gl~~~d~~tg~~~   91 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILERELHELHLASGRK-TVHA-LPFMGSALAKISDSK-------QLIA-SD-DGLFLRDTATGVLT   91 (295)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEE-CSSCEEEEEEEETTE-------EEEE-ET-TEEEEEETTTCCEE
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEE-CCCCcEEEEEecCCC-------EEEE-Ee-CccEEeecccceee
Confidence            67888777777665  68999999987753 3333 234577888888883       3333 34 45888999888764


Q ss_pred             EEEecC----C-CEEEEEEcCCCcEe
Q 033738           91 KTIDVK----F-PIFSMVRGKKGFAV  111 (112)
Q Consensus        91 ~~~~~~----~-~v~~~~~~~~~~~~  111 (112)
                      ......    . ..+.+.+.|+|++.
T Consensus        92 ~l~~~~~~~~~~~~nd~~vd~~G~iw  117 (295)
T d2ghsa1          92 LHAELESDLPGNRSNDGRMHPSGALW  117 (295)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEE
T ss_pred             EEeeeecCCCcccceeeEECCCCCEE
Confidence            443321    1 57788888888754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.32  E-value=0.039  Score=32.94  Aligned_cols=93  Identities=15%  Similarity=0.118  Sum_probs=53.9

Q ss_pred             eEEcCCCCEEEEEc--C----CeEEEEeCCCCceee-eccccCCceEEEEEecCCCCccceeEEEEe-------------
Q 033738           13 PAFSNDVKRLLVCT--S----NTVSIFSTSTGLQIS-SLEGHTAPVTTVIVVPASTPATKILSYCWT-------------   72 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~----~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------------   72 (112)
                      .++|||+++++.+-  +    -.++++|+.+++.+. .+..  .....++|.+++.   .++ |...             
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~---~~~-Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGK---GMF-YNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSS---EEE-EEECCCCSSCCSSSCCC
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCC---EEE-EEEeccccCcccccccc
Confidence            78899999988552  2    479999999987553 2221  1124678999885   222 2111             


Q ss_pred             eecCCcEEEEeCCCCce--EEEEecCC---CEEEEEEcCCCcEe
Q 033738           73 ASLDETIKYWDFSTPEL--LKTIDVKF---PIFSMVRGKKGFAV  111 (112)
Q Consensus        73 ~~~d~~i~~~~~~~~~~--~~~~~~~~---~v~~~~~~~~~~~~  111 (112)
                      ......+..+.+.+...  ...+....   .+..+..+++++++
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l  247 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYV  247 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCccee
Confidence            01123577777765432  23333221   45566677888765

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.053  Score=30.30  Aligned_cols=99  Identities=10%  Similarity=-0.000  Sum_probs=59.4

Q ss_pred             CcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738            8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS   85 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~   85 (112)
                      .+.. +++.+.+..|+...  .+.|.+.+++.......+.........+++.|...    .+ ++.-.+..+.|...++.
T Consensus        78 ~p~g-lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g----~l-y~~~~~~~~~I~r~~~d  151 (266)
T d1ijqa1          78 APDG-LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG----FM-YWTDWGTPAKIKKGGLN  151 (266)
T ss_dssp             CCCE-EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT----EE-EEEECSSSCEEEEEETT
T ss_pred             Ccce-EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccC----eE-EEeccCCCcceeEeccC
Confidence            3444 77877777777664  58899999876544444444445568889988653    22 23333444567666665


Q ss_pred             CCceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738           86 TPELLKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        86 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      ........... .....+++.+.++.||
T Consensus       152 Gs~~~~l~~~~~~~p~gl~iD~~~~~lY  179 (266)
T d1ijqa1         152 GVDIYSLVTENIQWPNGITLDLLSGRLY  179 (266)
T ss_dssp             SCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             CCceecccccccceeeEEEeeccccEEE
Confidence            43333333322 2567788887776654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.27  E-value=0.054  Score=33.74  Aligned_cols=41  Identities=24%  Similarity=0.182  Sum_probs=29.8

Q ss_pred             EEEeeecCCcEEEEeCCCCceEEEEecCCCE--EEEEEcCCCc
Q 033738           69 YCWTASLDETIKYWDFSTPELLKTIDVKFPI--FSMVRGKKGF  109 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~  109 (112)
                      +++.++.|+.++-+|.++|+.+..+.....+  .-+.|..+|+
T Consensus       477 lVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         477 LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence            4456899999999999999999888766522  2244555664

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.14  E-value=0.16  Score=30.82  Aligned_cols=66  Identities=15%  Similarity=0.097  Sum_probs=44.3

Q ss_pred             eEEcCCCCEEEEEc--CCeEEEEeCCCCce-----------eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738           13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQ-----------ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI   79 (112)
Q Consensus        13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i   79 (112)
                      +.++|||++++.++  +.++.++|++....           +.....-...-..-+|..++.       .+.+---|.++
T Consensus       280 V~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~-------aytslfids~v  352 (459)
T d1fwxa2         280 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGN-------AYTSLFLDSQV  352 (459)
T ss_dssp             EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSE-------EEEEETTTTEE
T ss_pred             eEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCce-------EEEEeeccceE
Confidence            88999999998887  89999999864211           111111222335567777763       34456679999


Q ss_pred             EEEeCC
Q 033738           80 KYWDFS   85 (112)
Q Consensus        80 ~~~~~~   85 (112)
                      ..|++.
T Consensus       353 ~kw~~~  358 (459)
T d1fwxa2         353 VKWNIE  358 (459)
T ss_dssp             EEEEHH
T ss_pred             EEEecc
Confidence            999974

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.01  E-value=0.1  Score=32.45  Aligned_cols=62  Identities=13%  Similarity=0.078  Sum_probs=40.9

Q ss_pred             CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738           28 NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        28 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~   97 (112)
                      +.+.-||+.+++.+-+.+... +...-..+..+.       +++.++.|+.++.+|.++|+.+..+....
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagg-------lVF~G~~dg~l~A~Da~TGe~LW~~~~~~  518 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGN-------VVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-------EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCC-------EEEEECCCCeEEEEECCCCcEeEEEECCC
Confidence            357778888887665554221 111111233443       45578899999999999999998887654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.72  E-value=0.15  Score=28.39  Aligned_cols=98  Identities=5%  Similarity=-0.059  Sum_probs=54.2

Q ss_pred             CcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee--cCCcEEEEe
Q 033738            8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS--LDETIKYWD   83 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~   83 (112)
                      .+.. +++..-+..|+...  .+.|.+.+++.......+.........+++.|...    .  ++.+..  ....|.-.+
T Consensus        80 ~p~~-iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g----~--ly~t~~~~~~~~I~r~~  152 (263)
T d1npea_          80 SPEG-IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRG----N--LYWTDWNRDNPKIETSH  152 (263)
T ss_dssp             CEEE-EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT----E--EEEEECCSSSCEEEEEE
T ss_pred             cccE-EEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccC----c--EEEeecCCCCcEEEEec
Confidence            3444 77776677776554  58899988875443223333334568899988764    1  222322  223344445


Q ss_pred             CCCCceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738           84 FSTPELLKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        84 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      +............ .....+++.+.++.||
T Consensus       153 ~dG~~~~~i~~~~~~~P~glaiD~~~~~lY  182 (263)
T d1npea_         153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLC  182 (263)
T ss_dssp             TTSCCCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred             CCCCCceeeeeecccccceEEEeecCcEEE
Confidence            5433332222222 2567788887776654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.24  E-value=0.2  Score=31.00  Aligned_cols=62  Identities=5%  Similarity=0.000  Sum_probs=38.9

Q ss_pred             CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738           28 NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        28 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~   97 (112)
                      +.+.-+|+.+++..-+.... .+...-.++..+.       +++.++.|+.++-+|.++|+.+..+....
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~Tagg-------lVF~G~~dg~l~A~Da~tGe~LW~~~l~~  499 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGN-------LVFQGTAAGQMHAYSADKGEALWQFEAQS  499 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTT-------EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCC-------EEEEECCCCcEEEEECCCCcEeEEEECCC
Confidence            34666777777665444321 1111111222332       44578899999999999999998887654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.22  E-value=0.14  Score=31.95  Aligned_cols=74  Identities=15%  Similarity=0.172  Sum_probs=44.1

Q ss_pred             CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCE--EEEEEc
Q 033738           28 NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPI--FSMVRG  105 (112)
Q Consensus        28 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v--~~~~~~  105 (112)
                      +.+.-+|+.+++..-+.... .+...-..+..+.       +++.++.|+.++-+|.++|+.+..++.+..+  .-+.|.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagg-------lVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~  537 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGN-------LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWE  537 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTT-------EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCC-------eEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEE
Confidence            45666677777655444322 1111111233442       4457889999999999999999888765422  224555


Q ss_pred             CCCc
Q 033738          106 KKGF  109 (112)
Q Consensus       106 ~~~~  109 (112)
                      .+|+
T Consensus       538 ~~G~  541 (582)
T d1flga_         538 QDGE  541 (582)
T ss_dssp             ETTE
T ss_pred             ECCE
Confidence            5564

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.15  E-value=0.061  Score=32.08  Aligned_cols=57  Identities=14%  Similarity=0.124  Sum_probs=34.8

Q ss_pred             EEEEEecCCCCccceeEEEEe-eec-CCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738           52 TTVIVVPASTPATKILSYCWT-ASL-DETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF  112 (112)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~-~~~-d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  112 (112)
                      ...+++|+++   .++ +..+ +|. ...++++|+.+|+.+...-.......+.|.++++.+|
T Consensus       128 ~~~~~Spd~~---~la-~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~  186 (430)
T d1qfma1         128 RGYAFSEDGE---YFA-YGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF  186 (430)
T ss_dssp             EEEEECTTSS---EEE-EEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEE
T ss_pred             cceEecCCCC---EEE-EEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEE
Confidence            3567788884   333 3333 222 3568899999998764322111235678998887664

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.28  Score=27.23  Aligned_cols=98  Identities=9%  Similarity=-0.030  Sum_probs=56.5

Q ss_pred             CcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCc----eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738            8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGL----QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY   81 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~   81 (112)
                      .+.. +++++.++.++...  .+.|...+++...    ....+......+..+++.+.+.      .++.+....+.|.+
T Consensus        31 ~~~~-id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~------~lY~~d~~~~~I~v  103 (266)
T d1ijqa1          31 NVVA-LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS------NIYWTDSVLGTVSV  103 (266)
T ss_dssp             SEEE-EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT------EEEEEETTTTEEEE
T ss_pred             ceEE-EEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc------eEEEEecCCCEEEe
Confidence            3444 77888788777765  4677666654321    1112222234456788876554      24446666788999


Q ss_pred             EeCCCCceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738           82 WDFSTPELLKTIDVK-FPIFSMVRGKKGFAVF  112 (112)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~  112 (112)
                      .++............ .....++.+|...++|
T Consensus       104 ~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly  135 (266)
T d1ijqa1         104 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY  135 (266)
T ss_dssp             EETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             EecCCceEEEEEcCCCCCcceEEEEcccCeEE
Confidence            998765544444433 3677788877655543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.53  E-value=0.23  Score=31.11  Aligned_cols=29  Identities=24%  Similarity=0.274  Sum_probs=24.4

Q ss_pred             EEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738           69 YCWTASLDETIKYWDFSTPELLKTIDVKF   97 (112)
Q Consensus        69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~   97 (112)
                      +++.++.|+.++-+|.++|+.+..+....
T Consensus       486 lVF~G~~Dg~l~A~Da~TGe~LW~~~~~~  514 (596)
T d1w6sa_         486 LVFYGTLDGYLKARDSDTGDLLWKFKIPS  514 (596)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEECCC
Confidence            44468899999999999999998887654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=87.24  E-value=1.6  Score=24.90  Aligned_cols=68  Identities=15%  Similarity=0.111  Sum_probs=39.3

Q ss_pred             EcCCCCEEEEEc-C-----C------eEEEEeCCCCceee--ec-cccCCceEEEEEecCCCCccceeEEEEeeecC-Cc
Q 033738           15 FSNDVKRLLVCT-S-----N------TVSIFSTSTGLQIS--SL-EGHTAPVTTVIVVPASTPATKILSYCWTASLD-ET   78 (112)
Q Consensus        15 ~~~~~~~l~~~~-~-----~------~v~~~~~~~~~~~~--~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d-~~   78 (112)
                      ...+|+.++.|+ +     +      .+.+||..++.-..  .. ..+.......++.+++.       +++.++.+ ..
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-------i~v~Gg~~~~~   99 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-------IVVTGGNDAKK   99 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-------EEEECSSSTTC
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-------EEEeecCCCcc
Confidence            445777777665 2     1      36789988764221  11 11222223556778884       55566544 67


Q ss_pred             EEEEeCCCCce
Q 033738           79 IKYWDFSTPEL   89 (112)
Q Consensus        79 i~~~~~~~~~~   89 (112)
                      +.+||..+...
T Consensus       100 ~~~yd~~~~~w  110 (387)
T d1k3ia3         100 TSLYDSSSDSW  110 (387)
T ss_dssp             EEEEEGGGTEE
T ss_pred             eeEecCccCcc
Confidence            99999876544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.56  E-value=2.7  Score=25.16  Aligned_cols=52  Identities=8%  Similarity=-0.001  Sum_probs=36.7

Q ss_pred             CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCcee--eecc------ccCCceEEEEEecCC
Q 033738            8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI--SSLE------GHTAPVTTVIVVPAS   60 (112)
Q Consensus         8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~--~~~~------~~~~~v~~~~~~~~~   60 (112)
                      .-.+ ++|.|||+.+++-. .|.|++++..++...  ..+.      ..++....++++|+-
T Consensus        28 ~P~~-la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf   88 (450)
T d1crua_          28 KPHA-LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF   88 (450)
T ss_dssp             SEEE-EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             CceE-EEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCC
Confidence            3445 89999999999886 799999987765422  2211      224556789999974