Citrus Sinensis ID: 033936

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAGGFLNKQLETSKSRNLAPSKFL
Secondary Structure (PSIPRED)
ccccccccccEEcccEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccccccEEEEEEcccccccccEEEcccccccccccc
Coil and Loop (DISEMBL)
mnstspanssisttplvgggsssnntatdefhfpsdlisiQDRKDEALQVLRSDLMATLNKEVKsldednwmfegprshIHLISTAGGFLNKqletsksrnlapskfl
Flexible Loop (DISEMBL)
mnstspanssisttplvggGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAGGFLNKqletsksrnlapskfl
Low Complexity Region (SEG)
MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAGGFLNKQLETSKSRNLAPSKFL
Disordered region (IsUnstruct)
***********************************************LQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAGGFL******************
Disordered Region (DISOPRED)
*************************TATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLIS*****************LA**K**
Disordered Region (DISEMBL)
**********************SNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAGGFLNKQLET************
Disordered Region (DISPRO)
********SSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAGGFLNKQLETSKSRNLA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAGGFLNKQLETSKSRNLAPSKFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
255573441	121	conserved hypothetical protein [Ricinus	0.972	0.867	0.716	2e-35
225433788	106	PREDICTED: uncharacterized protein LOC10	0.944	0.962	0.676	1e-31
297745182	99	unnamed protein product [Vitis vinifera]	0.814	0.888	0.727	1e-28
449436836	99	PREDICTED: uncharacterized protein LOC10	0.907	0.989	0.585	1e-25
224138988	120	predicted protein [Populus trichocarpa]	0.777	0.7	0.741	6e-25
449436834	113	PREDICTED: uncharacterized protein LOC10	0.814	0.778	0.602	4e-24
18398373	100	uncharacterized protein [Arabidopsis tha	0.851	0.92	0.634	2e-22
356531437	111	PREDICTED: uncharacterized protein LOC10	0.796	0.774	0.616	5e-22
388491252	109	unknown [Lotus japonicus]	0.981	0.972	0.614	7e-22
357485111	110	hypothetical protein MTR_5g029660 [Medic	0.75	0.736	0.621	2e-21

>gi|255573441|ref|XP_002527646.1| conserved hypothetical protein [Ricinus communis] gi|223532951|gb|EEF34717.1| conserved hypothetical protein [Ricinus communis]

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 87/106 (82%), Gaps = 1/106 (0%)

Query: 1   MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLN 60
           MNSTSPA+SS+STT +VGGGS +N  + DEF FPSDLISI DRK+EA  VL++DLM TLN
Sbjct: 1   MNSTSPAHSSVSTTAIVGGGSVTN-PSFDEFQFPSDLISIHDRKEEAFLVLKADLMVTLN 59

Query: 61  KEVKSLDEDNWMFEGPRSHIHLISTAGGFLNKQLETSKSRNLAPSK 106
           KEVKSLDEDNW FEGPRS IHLIS  GGF NK++E +KSRNL   K
Sbjct: 60  KEVKSLDEDNWKFEGPRSCIHLISRPGGFPNKKMEITKSRNLVQPK 105

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433788|ref|XP_002272866.1| PREDICTED: uncharacterized protein LOC100244603 [Vitis vinifera]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 83/102 (81%)

Query: 1   MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLN 60
           MNSTSPA+S IS + +VGGGSSS   A+++F  PSD ISIQDRKDEAL VL+SDLMA LN
Sbjct: 1   MNSTSPAHSVISGSAVVGGGSSSTALASEDFPLPSDPISIQDRKDEALLVLKSDLMAALN 60

Query: 61  KEVKSLDEDNWMFEGPRSHIHLISTAGGFLNKQLETSKSRNL 102
           KEVKSLDEDNW F+GPRS IHL+S  GG L+K++E++  RN 
Sbjct: 61  KEVKSLDEDNWKFDGPRSRIHLLSRPGGVLHKRVESTNHRNF 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745182|emb|CBI39174.3| unnamed protein product [Vitis vinifera]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 73/88 (82%)

Query: 1  MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLN 60
          MNSTSPA+S IS + +VGGGSSS   A+++F  PSD ISIQDRKDEAL VL+SDLMA LN
Sbjct: 1  MNSTSPAHSVISGSAVVGGGSSSTALASEDFPLPSDPISIQDRKDEALLVLKSDLMAALN 60

Query: 61 KEVKSLDEDNWMFEGPRSHIHLISTAGG 88
          KEVKSLDEDNW F+GPRS IHL+S  GG
Sbjct: 61 KEVKSLDEDNWKFDGPRSRIHLLSRPGG 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436836|ref|XP_004136198.1| PREDICTED: uncharacterized protein LOC101211880 isoform 2 [Cucumis sativus] gi|449525812|ref|XP_004169910.1| PREDICTED: uncharacterized LOC101211880 isoform 2 [Cucumis sativus]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 76/99 (76%), Gaps = 1/99 (1%)

Query: 1  MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLN 60
          MN+ SPANSS+STT + G  S++   + D+F FPS+LIS+ +RKDEA+  L+S++MA LN
Sbjct: 1  MNTPSPANSSVSTTAVAGRCSTNAALSLDDFRFPSNLISVPERKDEAMTALKSNIMAALN 60

Query: 61 KEVKSLDEDNWMFEGPRSHIHLISTAGG-FLNKQLETSK 98
          KEVKSLD+DNWMFEGPRS I+L+S  GG FL K  E  +
Sbjct: 61 KEVKSLDDDNWMFEGPRSRINLMSRQGGAFLKKTEEKRR 99

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138988|ref|XP_002326740.1| predicted protein [Populus trichocarpa] gi|222834062|gb|EEE72539.1| predicted protein [Populus trichocarpa]

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 72/85 (84%), Gaps = 1/85 (1%)

Query: 1  MNSTSPANSSISTTPLVGGGSSS-NNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATL 59
          MNSTSP NSS+STT ++GGG  S +N A D+FHFPSDLISIQDRKDEA+  L++DLMA L
Sbjct: 1  MNSTSPTNSSVSTTAIIGGGGGSVSNAALDDFHFPSDLISIQDRKDEAMLALKTDLMAAL 60

Query: 60 NKEVKSLDEDNWMFEGPRSHIHLIS 84
          NKEVKSLDEDNW F GPRS I+LIS
Sbjct: 61 NKEVKSLDEDNWKFGGPRSRINLIS 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436834|ref|XP_004136197.1| PREDICTED: uncharacterized protein LOC101211880 isoform 1 [Cucumis sativus] gi|449525810|ref|XP_004169909.1| PREDICTED: uncharacterized LOC101211880 isoform 1 [Cucumis sativus]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 70/88 (79%)

Query: 1  MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLN 60
          MN+ SPANSS+STT + G  S++   + D+F FPS+LIS+ +RKDEA+  L+S++MA LN
Sbjct: 1  MNTPSPANSSVSTTAVAGRCSTNAALSLDDFRFPSNLISVPERKDEAMTALKSNIMAALN 60

Query: 61 KEVKSLDEDNWMFEGPRSHIHLISTAGG 88
          KEVKSLD+DNWMFEGPRS I+L+S  G 
Sbjct: 61 KEVKSLDDDNWMFEGPRSRINLMSRQGA 88

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398373|ref|NP_564394.1| uncharacterized protein [Arabidopsis thaliana] gi|12597860|gb|AAG60169.1|AC084110_2 unknown protein [Arabidopsis thaliana] gi|21554525|gb|AAM63599.1| unknown [Arabidopsis thaliana] gi|28393556|gb|AAO42198.1| unknown protein [Arabidopsis thaliana] gi|28973599|gb|AAO64124.1| unknown protein [Arabidopsis thaliana] gi|332193341|gb|AEE31462.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 73/93 (78%), Gaps = 1/93 (1%)

Query: 1  MNSTSPANSSISTTPLVGGGSSSNNTAT-DEFHFPSDLISIQDRKDEALQVLRSDLMATL 59
          MN  SPA+S +STT + GGG SS   A  D+FHFP D+ S+Q+RKDEA++VL++DLM  L
Sbjct: 1  MNGASPAHSLVSTTAVAGGGGSSGAAAGLDDFHFPPDIPSMQERKDEAMRVLKADLMTEL 60

Query: 60 NKEVKSLDEDNWMFEGPRSHIHLISTAGGFLNK 92
          +KEVKSL+ED+WMFEGPRS IHLIS  G FL K
Sbjct: 61 DKEVKSLEEDSWMFEGPRSRIHLISRRGNFLKK 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531437|ref|XP_003534284.1| PREDICTED: uncharacterized protein LOC100795957 [Glycine max]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 63/86 (73%)

Query: 21  SSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHI 80
           SS+   + D+FH P D IS Q+RKDEA+ VL+SDLMA L+KEVKSL EDNW FEGPRS I
Sbjct: 26  SSNATVSIDDFHLPCDPISSQERKDEAMIVLKSDLMAALDKEVKSLVEDNWKFEGPRSRI 85

Query: 81  HLISTAGGFLNKQLETSKSRNLAPSK 106
           HL+S  GG L +  E SK+ NL P K
Sbjct: 86  HLVSHRGGHLYRPTEISKNWNLTPPK 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491252|gb|AFK33692.1| unknown [Lotus japonicus]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/109 (61%), Positives = 80/109 (73%), Gaps = 3/109 (2%)

Query: 1   MNSTSPANSSISTTPLVGGGSSSNNTAT-DEFHFPSDLISIQDRKDEALQVLRSDLMATL 59
           MNS+SPA+SSISTT +V GG +SN   + D+ HFP D IS Q+RKDE + VL+SD+MA L
Sbjct: 1   MNSSSPAHSSISTTAVVSGGGASNAAVSFDDLHFPFDPISTQERKDEVMLVLKSDIMAAL 60

Query: 60  NKEVKSLDEDNWMFEGPRSHIHLIST--AGGFLNKQLETSKSRNLAPSK 106
           +KEVKSLDEDNW FEGPRS I+L S    GG L  Q E SK+ NL P K
Sbjct: 61  DKEVKSLDEDNWKFEGPRSRINLTSRRGGGGPLPWQTEISKNWNLPPPK 109

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485111|ref|XP_003612843.1| hypothetical protein MTR_5g029660 [Medicago truncatula] gi|355514178|gb|AES95801.1| hypothetical protein MTR_5g029660 [Medicago truncatula]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 26  TATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLIS- 84
            + D+FHFP D IS ++RKDEA+ VL+SDLMA L+KEVKSLDEDNW FEGPRS IHL+S 
Sbjct: 29  VSVDDFHFPYDHISTEERKDEAMLVLKSDLMAALDKEVKSLDEDNWKFEGPRSRIHLVSR 88

Query: 85  TAGGFLNKQLETSKSRNLAPSK 106
             GG L++  E SK+ N  P K
Sbjct: 89  RGGGHLHRPTEISKNWNFTPPK 110

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
TAIR|locus:2028296	100	SAMBA "AT1G32310" [Arabidopsis	0.851	0.92	0.634	2.8e-27

TAIR|locus:2028296 SAMBA "AT1G32310" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 59/93 (63%), Positives = 73/93 (78%)

Query:     1 MNSTSPANSSISTTPLVGGGSSSNNTA-TDEFHFPSDLISIQDRKDEALQVLRSDLMATL 59
             MN  SPA+S +STT + GGG SS   A  D+FHFP D+ S+Q+RKDEA++VL++DLM  L
Sbjct:     1 MNGASPAHSLVSTTAVAGGGGSSGAAAGLDDFHFPPDIPSMQERKDEAMRVLKADLMTEL 60

Query:    60 NKEVKSLDEDNWMFEGPRSHIHLISTAGGFLNK 92
             +KEVKSL+ED+WMFEGPRS IHLIS  G FL K
Sbjct:    61 DKEVKSLEEDSWMFEGPRSRIHLISRRGNFLKK 93


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.125   0.346    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      108       108   0.00091  102 3  11 23  0.37    31
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  512 (54 KB)
  Total size of DFA:  104 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.05u 0.13s 13.18t   Elapsed:  00:00:01
  Total cpu time:  13.05u 0.13s 13.18t   Elapsed:  00:00:01
  Start:  Fri May 10 08:55:22 2013   End:  Fri May 10 08:55:23 2013

GO:0005515 "protein binding" evidence=IPI

GO:0007276 "gamete generation" evidence=RCA

GO:0032875 "regulation of DNA endoreduplication" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0009555 "pollen development" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010997 "anaphase-promoting complex binding" evidence=IDA

GO:0045732 "positive regulation of protein catabolic process" evidence=IMP

GO:0046621 "negative regulation of organ growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00290226 hypothetical protein (120 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
PF12940	442	RAG1: Recombination-activation protein 1 (RAG1); I	81.25
KOG4797	123	consensus Transcriptional regulator [Transcription	80.09

>PF12940 RAG1: Recombination-activation protein 1 (RAG1); InterPro: IPR024627 This entry represents recombination activating protein 1 (RAG1), which is the catalytic component of the RAG complex

Probab=81.25  E-value=2.2  Score=37.60  Aligned_cols=61  Identities=34%  Similarity=0.420  Sum_probs=43.6

Q ss_pred             CCCcceeccceecC--CCcccccccccCCCCCCcchhhhhhHHHHH----HHHHHHHHHHHHHhcccccCC
Q 033936            6 PANSSISTTPLVGG--GSSSNNTATDEFHFPSDLISIQDRKDEALQ----VLRSDLMATLNKEVKSLDEDN   70 (108)
Q Consensus         6 PA~S~VSttav~gG--G~s~~~~~~ddfhfp~D~is~~~RKDeam~----~Lk~dlma~L~keVksLdeDn   70 (108)
                      ||--.|||..-||=  |-|.-+.++||+  |+|-|.-.+|-|.|+.    .|.+|||+-|++.  .|||..
T Consensus        12 p~lknvs~s~~vgIi~glsgw~ssvdd~--p~dtItrrFrYdvALvsaLkDlEEdImEGLre~--gleds~   78 (442)
T PF12940_consen   12 PALKNVSTSCDVGIINGLSGWASSVDDS--PADTITRRFRYDVALVSALKDLEEDIMEGLRES--GLEDSA   78 (442)
T ss_pred             CcccccCCcCcccceeccCCCcccccCC--cchhhhhhccchHHHHHHHHHHHHHHHHhHhhc--Cccccc
Confidence            56667777765552  333334488998  6799999999999876    5667999998863  566543

The RAG complex is a multi-protein complex that mediates DNA cleavage during V(D)J (variable-diversity-joining) recombination []. RAG1 mediates DNA-binding to the conserved recombination signal sequences (RSS) []. Many of the proteins recognised by this entry are fragments.; GO: 0043565 sequence-specific DNA binding, 0033151 V(D)J recombination

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=80.09  E-value=1.6  Score=32.85  Aligned_cols=60  Identities=27%  Similarity=0.395  Sum_probs=33.0

Q ss_pred             CCcceeccceecCC-Cccccccc-ccCCCCCCc-chhhhhhHHHHHHHHHHHHHHHHHHhccc
Q 033936            7 ANSSISTTPLVGGG-SSSNNTAT-DEFHFPSDL-ISIQDRKDEALQVLRSDLMATLNKEVKSL   66 (108)
Q Consensus         7 A~S~VSttav~gGG-~s~~~~~~-ddfhfp~D~-is~~~RKDeam~~Lk~dlma~L~keVksL   66 (108)
                      .|++.|-...+||. .+++..++ --+|-++-. ..|-..-+.||+.+|+-||=+.|.||.-|
T Consensus        10 ~t~Sps~~~~~~gdp~~~~~s~~~~a~ha~~~~VvaIDNKIeQAMDLVKtHLmfAVREEVe~L   72 (123)
T KOG4797|consen   10 PTSSPSYGISLGGDPTSNASSALSVAAHASSGSVVAIDNKIEQAMDLVKTHLMFAVREEVEVL   72 (123)
T ss_pred             cccCCcccccccCCcccCchhHHHHhccCCCCceEeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555554 12211111 123333333 23334457899999999998888887544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00