Citrus Sinensis ID: 034082


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
MASSNPETESNNGSSIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSVASGVMECSLILYYNSCIYRCCIPGDSGGPKAACAGCAGFAAFSVLIEKFLDRHT
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccc
massnpetesnngssiakepekpqieafrmpTMEEMRAQEVWNNCAVRSVASGVMECSLILYYNsciyrccipgdsggpkaacagCAGFAAFSVLIEKFLDRHT
massnpetesnngssiakepekpqIEAFRMPTMEEMRAQEVWNNCAVRSVASGVMECSLILYYNSCIYRCCIPGDSGGPKAACAGCAGFAAFSVLIEKFLDRHT
MASSNPETESNNGSSIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSVASGVMECSLILYYNSCIYRCCIPGDSGGPKaacagcagfaafSVLIEKFLDRHT
**************************************QEVWNNCAVRSVASGVMECSLILYYNSCIYRCCIPGDSGGPKAACAGCAGFAAFSVLIEKFL****
****************************************VWNNCAVRSVASGVMECSLILYYNSCIYRCCIPGDSGGPKAACAGCAGFAAFSVLIEKFLDR**
********************EKPQIEAFRMPTMEEMRAQEVWNNCAVRSVASGVMECSLILYYNSCIYRCCIPGDSGGPKAACAGCAGFAAFSVLIEKFLDRHT
**********************PQIEAFRMPTMEEMRAQEVWNNCAVRSVASGVMECSLILYYNSCIYRCCIPGDSGGPKAACAGCAGFAAFSVLIEKFLDR**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSNPETESNNGSSIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSVASGVMECSLILYYNSCIYRCCIPGDSGGPKAACAGCAGFAAFSVLIEKFLDRHT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query104 2.2.26 [Sep-21-2011]
A2RVP7173 Mitochondrial import inne yes no 0.634 0.381 0.448 1e-09
A1XJK0142 Mitochondrial import inne no no 0.692 0.507 0.435 3e-09
>sp|A2RVP7|TI221_ARATH Mitochondrial import inner membrane translocase subunit TIM22-1 OS=Arabidopsis thaliana GN=TIM22-1 PE=2 SV=1 Back     alignment and function desciption
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 40/78 (51%), Gaps = 12/78 (15%)

Query: 39  QEVWNNCAVRSVASGVMECSLILY---------YNSCIYRCCIPGD---SGGPKAACAGC 86
           Q  WN+C   +V   V   +  +           N+ I  C   G     GGPKAAC GC
Sbjct: 96  QRSWNSCKTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGC 155

Query: 87  AGFAAFSVLIEKFLDRHT 104
           AGFA FSVLIEKF DRHT
Sbjct: 156 AGFATFSVLIEKFFDRHT 173




Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane.
Arabidopsis thaliana (taxid: 3702)
>sp|A1XJK0|TI224_ARATH Mitochondrial import inner membrane translocase subunit TIM22-4 OS=Arabidopsis thaliana GN=TIM22-4 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query104
225434486170 PREDICTED: mitochondrial import inner me 0.480 0.294 0.679 2e-12
224059863179 predicted protein [Populus trichocarpa] 0.519 0.301 0.629 3e-10
224103871180 predicted protein [Populus trichocarpa] 0.519 0.3 0.666 4e-10
388502604163 unknown [Lotus japonicus] 0.509 0.325 0.528 6e-10
255554696173 protein with unknown function [Ricinus c 0.423 0.254 0.680 3e-09
357474293170 Mitochondrial import inner membrane tran 0.557 0.341 0.542 4e-09
388499532170 unknown [Medicago truncatula] 0.557 0.341 0.542 5e-09
297844776171 At3g10110 [Arabidopsis lyrata subsp. lyr 0.384 0.233 0.557 1e-08
363807966170 uncharacterized protein LOC100780110 [Gl 0.490 0.3 0.529 3e-08
89213235173 At3g10110 [Arabidopsis thaliana] gi|8921 0.634 0.381 0.448 4e-08
>gi|225434486|ref|XP_002275144.1| PREDICTED: mitochondrial import inner membrane translocase subunit tim22 [Vitis vinifera] gi|297745845|emb|CBI15901.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 42/53 (79%)

Query: 3  SSNPETESNNGSSIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSVASGVM 55
          SSN  +E  N SS + E EKPQIE  RMPT+EE+R Q++WNNCAVRSVASGVM
Sbjct: 2  SSNSGSEFTNDSSSSTEAEKPQIEPIRMPTVEEIRGQDIWNNCAVRSVASGVM 54




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059863|ref|XP_002300003.1| predicted protein [Populus trichocarpa] gi|222847261|gb|EEE84808.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103871|ref|XP_002313226.1| predicted protein [Populus trichocarpa] gi|222849634|gb|EEE87181.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388502604|gb|AFK39368.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255554696|ref|XP_002518386.1| protein with unknown function [Ricinus communis] gi|223542481|gb|EEF44022.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|357474293|ref|XP_003607431.1| Mitochondrial import inner membrane translocase subunit TIM22 [Medicago truncatula] gi|357474311|ref|XP_003607440.1| Mitochondrial import inner membrane translocase subunit TIM22 [Medicago truncatula] gi|355508486|gb|AES89628.1| Mitochondrial import inner membrane translocase subunit TIM22 [Medicago truncatula] gi|355508495|gb|AES89637.1| Mitochondrial import inner membrane translocase subunit TIM22 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388499532|gb|AFK37832.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297844776|ref|XP_002890269.1| At3g10110 [Arabidopsis lyrata subsp. lyrata] gi|297336111|gb|EFH66528.1| At3g10110 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|363807966|ref|NP_001242201.1| uncharacterized protein LOC100780110 [Glycine max] gi|255636497|gb|ACU18587.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|89213235|gb|ABD64057.1| At3g10110 [Arabidopsis thaliana] gi|89213237|gb|ABD64058.1| At1g18320 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query104
TAIR|locus:2100088173 MEE67 "AT3G10110" [Arabidopsis 0.528 0.317 0.543 7.4e-11
TAIR|locus:2100088 MEE67 "AT3G10110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query:     1 MASSNPETESNNGSS--IAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSVASGVM 55
             MA S+    +   SS  +A +    QI+  RMPT+EE+RAQEVWNNCAVR+V SGVM
Sbjct:     1 MADSSAAEPTTGASSPPVASDENSTQIQPIRMPTIEEIRAQEVWNNCAVRAVTSGVM 57


GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0015031 "protein transport" evidence=ISS
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query104
pfam02466128 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family 0.002
>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family Back     alignment and domain information
 Score = 34.9 bits (81), Expect = 0.002
 Identities = 15/26 (57%), Positives = 15/26 (57%)

Query: 74  GDSGGPKAACAGCAGFAAFSVLIEKF 99
           G  GGPKAA  G A  AAFS  IE  
Sbjct: 99  GLRGGPKAAAVGAAVGAAFSAAIEGL 124


The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 104
KOG3225168 consensus Mitochondrial import inner membrane tran 99.92
TIGR00980170 3a0801so1tim17 mitochondrial import inner membrane 98.81
COG5596191 TIM22 Mitochondrial import inner membrane transloc 98.58
PF02466128 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I 98.52
PTZ00236164 mitochondrial import inner membrane translocase su 98.45
TIGR00983149 3a0801s02tim23 mitochondrial import inner membrane 97.7
KOG1652183 consensus Mitochondrial import inner membrane tran 97.43
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
Probab=99.92  E-value=9.1e-26  Score=171.70  Aligned_cols=84  Identities=39%  Similarity=0.613  Sum_probs=75.8

Q ss_pred             CCccccccCCC----CHHHHHHHHHHhhhhhHHHhhhhhhhhHHHH----------------------------------
Q 034082           21 EKPQIEAFRMP----TMEEMRAQEVWNNCAVRSVASGVMECSLILY----------------------------------   62 (104)
Q Consensus        21 e~~~~~~~~~~----t~ee~~~~~~mesC~~Ksv~SgVmG~gLG~~----------------------------------   62 (104)
                      ..|+..++.+|    +++|.+.++.|+||++|+++|||+||+||+.                                  
T Consensus        14 ~~p~~~~~l~pe~~~~~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~   93 (168)
T KOG3225|consen   14 NSPKQYSLLTPEEVGDPTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRS   93 (168)
T ss_pred             CCCccccccCccccCChHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhh
Confidence            44555566666    9999999999999999999999999999987                                  


Q ss_pred             -----------------------------hhhhhccccccCC----CCchhHHhhhhHHHHHHHHHHHHHhhhCC
Q 034082           63 -----------------------------YNSCIYRCCIPGD----SGGPKAACAGCAGFAAFSVLIEKFLDRHT  104 (104)
Q Consensus        63 -----------------------------~s~a~~aGc~TGg----~~Gp~Aa~~GcagFAAFS~aId~~m~~~~  104 (104)
                                                   |.|++++||+|||    ++||||+++||++|++||++||+|||.+.
T Consensus        94 ~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agfa~fS~~id~y~~~~~  168 (168)
T KOG3225|consen   94 GSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGFAAFSAAIDKYMRGRE  168 (168)
T ss_pred             cchhhhhhhhhhhehhHHHHHHHHHhhhchhcceeeeeeeccchhhcccchhhhhchhHHHHHHHHHHHhhhcCC
Confidence                                         6677999999999    99999999999999999999999999863



>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17 Back     alignment and domain information
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes [] Back     alignment and domain information
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional Back     alignment and domain information
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23 Back     alignment and domain information
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00