Citrus Sinensis ID: 034154


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
MGLLSWFMGNPNPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEVPRPAESVTVFEFGSVAASADKVTMAGYCPVSDDLEPCRWEILPASDSDAPQFRVVF
cccEEEcccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEcccccccccEEEEEEEccccccccEEEEEEEccccccccEEEEc
ccEEEEEcccccccccccccccccccccccccccccccccccEEEEccccccEEEEEEccEccccccEEEEcccccccccccccEEEEEccccccccEEEEc
mgllswfmgnpnpnpqqsesfksagdtqnpkseisavpgmngaievprpaesvtvfefgsvaasadkvtmagycpvsddlepcrweilpasdsdapqfrvvf
MGLLSWFMGNPNPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEVPRPAESVTVFEFGSVAASADKVTMAGYCPVSDDLEPCRWEilpasdsdapqfRVVF
MGLLSWFMGNPNPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEVPRPAESVTVFEFGSVAASADKVTMAGYCPVSDDLEPCRWEILPASDSDAPQFRVVF
***************************************************SVTVFEFGSVAASADKVTMAGYCPVSDDLEPCRWEIL**************
MGLLS*************************************AIEVPRPAESVTVFEFGSVAASADKVTMAGYCPVSDDLEPCRWEILPASDSDA*QFRVVF
MGLLSWFMGNPNPNPQ***************SEISAVPGMNGAIEVPRPAESVTVFEFGSVAASADKVTMAGYCPVSDDLEPCRWEILPASDSDAPQFRVVF
*GL****MG******************************MNGAIEVPRPAESVTVFEFGSVAASADKVTMAGYCPVSDDLEPCRWEILPASDSDAPQFRVVF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
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MGLLSWFMGNPNPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEVPRPAESVTVFEFGSVAASADKVTMAGYCPVSDDLEPCRWEILPASDSDAPQFRVVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query102
7019678 462 allyl alcohol dehydrogenase-like protein 0.950 0.209 0.715 3e-31
1841134997 uncharacterized protein [Arabidopsis tha 0.950 1.0 0.715 1e-30
25557573696 conserved hypothetical protein [Ricinus 0.941 1.0 0.676 4e-30
22410975498 predicted protein [Populus trichocarpa] 0.950 0.989 0.669 4e-30
22542730897 PREDICTED: uncharacterized protein LOC10 0.931 0.979 0.663 2e-27
35654136698 PREDICTED: uncharacterized protein LOC10 0.950 0.989 0.631 3e-27
356495560104 PREDICTED: uncharacterized protein LOC10 1.0 0.980 0.596 3e-26
44946154199 PREDICTED: uncharacterized protein LOC10 0.970 1.0 0.588 2e-25
226505104101 allyl alcohol dehydrogenase-like protein 0.941 0.950 0.495 3e-18
116790794101 unknown [Picea sitchensis] 0.980 0.990 0.504 1e-17
>gi|7019678|emb|CAB75803.1| allyl alcohol dehydrogenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 81/102 (79%), Gaps = 5/102 (4%)

Query: 1   MGLLSWFMGNPNPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEVPRPAESVTVFEFGS 60
           MG+LSWF G+P P+  QSE+ K     Q PKSE  A PGMNGAIEVPRP +  TVFEFGS
Sbjct: 366 MGILSWFTGSPKPS--QSETSKPEM-IQMPKSETPA-PGMNGAIEVPRP-DRATVFEFGS 420

Query: 61  VAASADKVTMAGYCPVSDDLEPCRWEILPASDSDAPQFRVVF 102
           VAA+ D+VT+AGYCPVSDDLEPCRWEILPA   DAPQFRVVF
Sbjct: 421 VAATGDRVTLAGYCPVSDDLEPCRWEILPADGKDAPQFRVVF 462




Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411349|ref|NP_567086.1| uncharacterized protein [Arabidopsis thaliana] gi|297820828|ref|XP_002878297.1| hypothetical protein ARALYDRAFT_486449 [Arabidopsis lyrata subsp. lyrata] gi|17473784|gb|AAL38327.1| allyl alcohol dehydrogenase-like protein [Arabidopsis thaliana] gi|20148537|gb|AAM10159.1| allyl alcohol dehydrogenase-like protein [Arabidopsis thaliana] gi|21553808|gb|AAM62901.1| unknown [Arabidopsis thaliana] gi|51970082|dbj|BAD43733.1| unknown protein [Arabidopsis thaliana] gi|297324135|gb|EFH54556.1| hypothetical protein ARALYDRAFT_486449 [Arabidopsis lyrata subsp. lyrata] gi|332646454|gb|AEE79975.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255575736|ref|XP_002528767.1| conserved hypothetical protein [Ricinus communis] gi|223531770|gb|EEF33589.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224109754|ref|XP_002333206.1| predicted protein [Populus trichocarpa] gi|118483538|gb|ABK93667.1| unknown [Populus trichocarpa] gi|118485122|gb|ABK94424.1| unknown [Populus trichocarpa] gi|222835095|gb|EEE73544.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225427308|ref|XP_002282023.1| PREDICTED: uncharacterized protein LOC100253981 [Vitis vinifera] gi|147843023|emb|CAN83312.1| hypothetical protein VITISV_031607 [Vitis vinifera] gi|297742156|emb|CBI33943.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541366|ref|XP_003539148.1| PREDICTED: uncharacterized protein LOC100808080 [Glycine max] Back     alignment and taxonomy information
>gi|356495560|ref|XP_003516644.1| PREDICTED: uncharacterized protein LOC100780185 [Glycine max] Back     alignment and taxonomy information
>gi|449461541|ref|XP_004148500.1| PREDICTED: uncharacterized protein LOC101203507 [Cucumis sativus] gi|449510790|ref|XP_004163759.1| PREDICTED: uncharacterized LOC101203507 [Cucumis sativus] Back     alignment and taxonomy information
>gi|226505104|ref|NP_001152707.1| allyl alcohol dehydrogenase-like protein [Zea mays] gi|195620916|gb|ACG32288.1| allyl alcohol dehydrogenase-like protein [Zea mays] gi|195659203|gb|ACG49069.1| allyl alcohol dehydrogenase-like protein [Zea mays] gi|413945916|gb|AFW78565.1| allyl alcohol dehydrogenase-like protein [Zea mays] Back     alignment and taxonomy information
>gi|116790794|gb|ABK25742.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query102
TAIR|locus:208041297 AT3G59840 "AT3G59840" [Arabido 0.950 1.0 0.715 8.5e-33
TAIR|locus:2080412 AT3G59840 "AT3G59840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 73/102 (71%), Positives = 81/102 (79%)

Query:     1 MGLLSWFMGNPNPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEVPRPAESVTVFEFGS 60
             MG+LSWF G+P P+  QSE+ K     Q PKSE  A PGMNGAIEVPRP +  TVFEFGS
Sbjct:     1 MGILSWFTGSPKPS--QSETSKPEM-IQMPKSETPA-PGMNGAIEVPRP-DRATVFEFGS 55

Query:    61 VAASADKVTMAGYCPVSDDLEPCRWEILPASDSDAPQFRVVF 102
             VAA+ D+VT+AGYCPVSDDLEPCRWEILPA   DAPQFRVVF
Sbjct:    56 VAATGDRVTLAGYCPVSDDLEPCRWEILPADGKDAPQFRVVF 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      102       102   0.00091  102 3  11 23  0.46    30
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  119 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.93u 0.10s 13.03t   Elapsed:  00:00:01
  Total cpu time:  12.93u 0.10s 13.03t   Elapsed:  00:00:01
  Start:  Fri May 10 16:18:58 2013   End:  Fri May 10 16:18:59 2013


GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009536 "plastid" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00