Citrus Sinensis ID: 034154
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 102 | ||||||
| 7019678 | 462 | allyl alcohol dehydrogenase-like protein | 0.950 | 0.209 | 0.715 | 3e-31 | |
| 18411349 | 97 | uncharacterized protein [Arabidopsis tha | 0.950 | 1.0 | 0.715 | 1e-30 | |
| 255575736 | 96 | conserved hypothetical protein [Ricinus | 0.941 | 1.0 | 0.676 | 4e-30 | |
| 224109754 | 98 | predicted protein [Populus trichocarpa] | 0.950 | 0.989 | 0.669 | 4e-30 | |
| 225427308 | 97 | PREDICTED: uncharacterized protein LOC10 | 0.931 | 0.979 | 0.663 | 2e-27 | |
| 356541366 | 98 | PREDICTED: uncharacterized protein LOC10 | 0.950 | 0.989 | 0.631 | 3e-27 | |
| 356495560 | 104 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.980 | 0.596 | 3e-26 | |
| 449461541 | 99 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 1.0 | 0.588 | 2e-25 | |
| 226505104 | 101 | allyl alcohol dehydrogenase-like protein | 0.941 | 0.950 | 0.495 | 3e-18 | |
| 116790794 | 101 | unknown [Picea sitchensis] | 0.980 | 0.990 | 0.504 | 1e-17 |
| >gi|7019678|emb|CAB75803.1| allyl alcohol dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/102 (71%), Positives = 81/102 (79%), Gaps = 5/102 (4%)
Query: 1 MGLLSWFMGNPNPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEVPRPAESVTVFEFGS 60
MG+LSWF G+P P+ QSE+ K Q PKSE A PGMNGAIEVPRP + TVFEFGS
Sbjct: 366 MGILSWFTGSPKPS--QSETSKPEM-IQMPKSETPA-PGMNGAIEVPRP-DRATVFEFGS 420
Query: 61 VAASADKVTMAGYCPVSDDLEPCRWEILPASDSDAPQFRVVF 102
VAA+ D+VT+AGYCPVSDDLEPCRWEILPA DAPQFRVVF
Sbjct: 421 VAATGDRVTLAGYCPVSDDLEPCRWEILPADGKDAPQFRVVF 462
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18411349|ref|NP_567086.1| uncharacterized protein [Arabidopsis thaliana] gi|297820828|ref|XP_002878297.1| hypothetical protein ARALYDRAFT_486449 [Arabidopsis lyrata subsp. lyrata] gi|17473784|gb|AAL38327.1| allyl alcohol dehydrogenase-like protein [Arabidopsis thaliana] gi|20148537|gb|AAM10159.1| allyl alcohol dehydrogenase-like protein [Arabidopsis thaliana] gi|21553808|gb|AAM62901.1| unknown [Arabidopsis thaliana] gi|51970082|dbj|BAD43733.1| unknown protein [Arabidopsis thaliana] gi|297324135|gb|EFH54556.1| hypothetical protein ARALYDRAFT_486449 [Arabidopsis lyrata subsp. lyrata] gi|332646454|gb|AEE79975.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|255575736|ref|XP_002528767.1| conserved hypothetical protein [Ricinus communis] gi|223531770|gb|EEF33589.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224109754|ref|XP_002333206.1| predicted protein [Populus trichocarpa] gi|118483538|gb|ABK93667.1| unknown [Populus trichocarpa] gi|118485122|gb|ABK94424.1| unknown [Populus trichocarpa] gi|222835095|gb|EEE73544.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225427308|ref|XP_002282023.1| PREDICTED: uncharacterized protein LOC100253981 [Vitis vinifera] gi|147843023|emb|CAN83312.1| hypothetical protein VITISV_031607 [Vitis vinifera] gi|297742156|emb|CBI33943.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356541366|ref|XP_003539148.1| PREDICTED: uncharacterized protein LOC100808080 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356495560|ref|XP_003516644.1| PREDICTED: uncharacterized protein LOC100780185 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449461541|ref|XP_004148500.1| PREDICTED: uncharacterized protein LOC101203507 [Cucumis sativus] gi|449510790|ref|XP_004163759.1| PREDICTED: uncharacterized LOC101203507 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|226505104|ref|NP_001152707.1| allyl alcohol dehydrogenase-like protein [Zea mays] gi|195620916|gb|ACG32288.1| allyl alcohol dehydrogenase-like protein [Zea mays] gi|195659203|gb|ACG49069.1| allyl alcohol dehydrogenase-like protein [Zea mays] gi|413945916|gb|AFW78565.1| allyl alcohol dehydrogenase-like protein [Zea mays] | Back alignment and taxonomy information |
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| >gi|116790794|gb|ABK25742.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 102 | ||||||
| TAIR|locus:2080412 | 97 | AT3G59840 "AT3G59840" [Arabido | 0.950 | 1.0 | 0.715 | 8.5e-33 |
| TAIR|locus:2080412 AT3G59840 "AT3G59840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 73/102 (71%), Positives = 81/102 (79%)
Query: 1 MGLLSWFMGNPNPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEVPRPAESVTVFEFGS 60
MG+LSWF G+P P+ QSE+ K Q PKSE A PGMNGAIEVPRP + TVFEFGS
Sbjct: 1 MGILSWFTGSPKPS--QSETSKPEM-IQMPKSETPA-PGMNGAIEVPRP-DRATVFEFGS 55
Query: 61 VAASADKVTMAGYCPVSDDLEPCRWEILPASDSDAPQFRVVF 102
VAA+ D+VT+AGYCPVSDDLEPCRWEILPA DAPQFRVVF
Sbjct: 56 VAATGDRVTLAGYCPVSDDLEPCRWEILPADGKDAPQFRVVF 97
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 102 102 0.00091 102 3 11 23 0.46 30
29 0.48 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 547 (58 KB)
Total size of DFA: 119 KB (2078 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.93u 0.10s 13.03t Elapsed: 00:00:01
Total cpu time: 12.93u 0.10s 13.03t Elapsed: 00:00:01
Start: Fri May 10 16:18:58 2013 End: Fri May 10 16:18:59 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00