Citrus Sinensis ID: 034184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MDNSLPQTKDVDLSDENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEARIADVREVAPETEGSSLDIPVVSPPVNNHHEQGTNSFHQP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHccccccEEccccccccccccEEEEcccccccccccccccccccccHHEHHcHHEccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdnslpqtkdvdlsdenVDKACLSvsravpepgasvVHMTVDqvnlqpigdgewsdIQATEARIADVrevapetegssldipvvsppvnnhheqgtnsfhqp
Flexible Loop (DISEMBL)
mdnslpqtkdvdlsdeNVDKACLSVSRavpepgasvVHMTVDQVNLQPIGDGEWSDIQATEARIADVREVAPETEGSSLDIPVVSPPVNNHheqgtnsfhqp
Low Complexity Region (SEG)
MDNSLPQTKDVDLSDENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEARIADVREVAPETEGSSLDIPVVSPPVNNHHEQGTNSFHQP
Disordered region (IsUnstruct)
**********************************SVVHMTVDQVNLQPIGDGEWSDIQATEA*I**************************************
Disordered Region (DISOPRED)
**************DENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEARIADV***A******SLDIPVVSPPV**************
Disordered Region (DISEMBL)
**********VDLSDENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEARIADVREVAPETEGSSLDIPVVSPPVN*************
Disordered Region (DISPRO)
**************DENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEARIADVREVAP***GSSLDIPVVSP****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDNSLPQTKDVDLSDENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEARIADVREVAPETEGSSLDIPVVSPPVNNHHEQGTNSFHQP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
225446797	500	PREDICTED: uncharacterized protein LOC10	0.970	0.198	0.84	1e-42
224066555	501	predicted protein [Populus trichocarpa]	0.980	0.199	0.79	2e-39
224082584	501	predicted protein [Populus trichocarpa]	0.990	0.201	0.752	9e-38
255558688	499	conserved hypothetical protein [Ricinus	0.980	0.200	0.77	1e-37
356553844	490	PREDICTED: uncharacterized protein LOC10	0.970	0.202	0.77	3e-37
356501455	490	PREDICTED: uncharacterized protein LOC10	0.970	0.202	0.76	8e-37
357494193	492	hypothetical protein MTR_5g091000 [Medic	0.970	0.201	0.735	5e-33
449502140	487	PREDICTED: uncharacterized protein LOC10	0.892	0.186	0.693	1e-28
449460032	490	PREDICTED: uncharacterized protein LOC10	0.843	0.175	0.705	1e-28
326505758	500	predicted protein [Hordeum vulgare subsp	0.921	0.188	0.6	2e-20

>gi|225446797|ref|XP_002283267.1| PREDICTED: uncharacterized protein LOC100254120 [Vitis vinifera] gi|302143523|emb|CBI22084.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/100 (84%), Positives = 91/100 (91%), Gaps = 1/100 (1%)

Query: 3   NSLPQTKDVDLSDENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEA 62
           N+ P TK VDLSDENVDKACLSVSRAVP  G +VVH+ +DQVNL+P+GDGEWSDIQATEA
Sbjct: 402 NTRPLTKHVDLSDENVDKACLSVSRAVP-VGENVVHLAMDQVNLRPVGDGEWSDIQATEA 460

Query: 63  RIADVREVAPETEGSSLDIPVVSPPVNNHHEQGTNSFHQP 102
           RIADVRE+APETEGSSLDIPVVS PVNNHHEQG NSFHQP
Sbjct: 461 RIADVREIAPETEGSSLDIPVVSLPVNNHHEQGANSFHQP 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066555|ref|XP_002302134.1| predicted protein [Populus trichocarpa] gi|222843860|gb|EEE81407.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/100 (79%), Positives = 86/100 (86%)

Query: 3   NSLPQTKDVDLSDENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEA 62
            +LP TK VD+SDENVDKACLSVSRAVP  G SVVHM VDQ N +P+ D EWSDIQATE+
Sbjct: 402 RTLPLTKHVDMSDENVDKACLSVSRAVPASGESVVHMAVDQSNPRPVEDAEWSDIQATES 461

Query: 63  RIADVREVAPETEGSSLDIPVVSPPVNNHHEQGTNSFHQP 102
            IADVREVAPETEGSSLDI VVSPPVNNHHEQG N++HQP
Sbjct: 462 TIADVREVAPETEGSSLDISVVSPPVNNHHEQGANTYHQP 501

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082584|ref|XP_002306753.1| predicted protein [Populus trichocarpa] gi|222856202|gb|EEE93749.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 76/101 (75%), Positives = 86/101 (85%)

Query: 1   MDNSLPQTKDVDLSDENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQAT 60
           +D++LP TK VDLSDENVDKACLSVSRAVP  G +VVHM VDQ N +P+ D EWSDIQAT
Sbjct: 400 VDSTLPLTKHVDLSDENVDKACLSVSRAVPAAGENVVHMAVDQSNPRPVEDAEWSDIQAT 459

Query: 61  EARIADVREVAPETEGSSLDIPVVSPPVNNHHEQGTNSFHQ 101
           E+ IADVREVAPE +GSSLDIPVV  PVNNHHEQG N++HQ
Sbjct: 460 ESTIADVREVAPEIDGSSLDIPVVRAPVNNHHEQGANTYHQ 500

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558688|ref|XP_002520368.1| conserved hypothetical protein [Ricinus communis] gi|223540415|gb|EEF41984.1| conserved hypothetical protein [Ricinus communis]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 85/100 (85%)

Query: 3   NSLPQTKDVDLSDENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEA 62
           N+LP TK VDLS+ NVDKACLSVSR +P    SVV M VDQ NLQPIGD EWSDIQ TE+
Sbjct: 400 NTLPLTKHVDLSEANVDKACLSVSRVLPVSEESVVDMGVDQANLQPIGDTEWSDIQPTES 459

Query: 63  RIADVREVAPETEGSSLDIPVVSPPVNNHHEQGTNSFHQP 102
           RIADV+E+APETEGSSLDI VVSPPVNNHH+QG N+FHQP
Sbjct: 460 RIADVKEIAPETEGSSLDISVVSPPVNNHHDQGGNNFHQP 499

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553844|ref|XP_003545261.1| PREDICTED: uncharacterized protein LOC100792926 [Glycine max]

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 85/100 (85%), Gaps = 1/100 (1%)

Query: 4   SLPQTKDVDLSDENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEAR 63
           S   TK VD ++ENVDKACLSVSRA+P P  +VVHM  DQVN+QP+GD EWSDIQATEAR
Sbjct: 391 SCSDTKHVDPTEENVDKACLSVSRAIPVPAENVVHMATDQVNIQPVGDNEWSDIQATEAR 450

Query: 64  IADVREVAPETEGSSLDIPVVSPP-VNNHHEQGTNSFHQP 102
           IADVREVAPET+GSSLDIPVVS P  N+HHEQG NSFHQP
Sbjct: 451 IADVREVAPETDGSSLDIPVVSQPGTNHHHEQGANSFHQP 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501455|ref|XP_003519540.1| PREDICTED: uncharacterized protein LOC100820315 [Glycine max]

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 76/100 (76%), Positives = 85/100 (85%), Gaps = 1/100 (1%)

Query: 4   SLPQTKDVDLSDENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEAR 63
           S   TK VD ++ENVDKACLSVSRA+P P  +VVHM  DQVN+QP+GD EWSDIQATEAR
Sbjct: 391 SCSDTKHVDPTEENVDKACLSVSRAIPVPAENVVHMATDQVNIQPVGDNEWSDIQATEAR 450

Query: 64  IADVREVAPETEGSSLDIPVVSPP-VNNHHEQGTNSFHQP 102
           IADVREVAPET+GSSLDIPVV+ P  N+HHEQG NSFHQP
Sbjct: 451 IADVREVAPETDGSSLDIPVVNQPGTNHHHEQGANSFHQP 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494193|ref|XP_003617385.1| hypothetical protein MTR_5g091000 [Medicago truncatula] gi|355518720|gb|AET00344.1| hypothetical protein MTR_5g091000 [Medicago truncatula]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 86/102 (84%), Gaps = 3/102 (2%)

Query: 4   SLPQTKDVDLSDENVDKACLSVSRAVPEPGASVVHMTVDQV-NLQPIGDGEWSDIQATEA 62
           S   TK VD ++ENVDKACLSVSRA P P  +VVHM  DQV N+QP+GD EWSDIQATEA
Sbjct: 391 SCSDTKHVDPTEENVDKACLSVSRANPIPAENVVHMATDQVNNIQPVGDNEWSDIQATEA 450

Query: 63  RIADVREVA-PETEGSSLDIPVVSPP-VNNHHEQGTNSFHQP 102
           RI+DVREVA PET+GSSLDIPVVS P +N+HHEQG+NSF+QP
Sbjct: 451 RISDVREVATPETDGSSLDIPVVSQPGINHHHEQGSNSFNQP 492

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502140|ref|XP_004161554.1| PREDICTED: uncharacterized protein LOC101223787 [Cucumis sativus]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 77/101 (76%), Gaps = 10/101 (9%)

Query: 2   DNSLPQTKDVDLSDENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATE 61
           D SL  TK VD SD+NVDKACLS SRA+P  G         +VNLQPIGDGEWSDIQ TE
Sbjct: 397 DGSLL-TKHVDSSDDNVDKACLSDSRAIPVSG---------EVNLQPIGDGEWSDIQTTE 446

Query: 62  ARIADVREVAPETEGSSLDIPVVSPPVNNHHEQGTNSFHQP 102
           ARIADVRE+A ETEGSSLDI VVS PVN+HHEQ  +S +QP
Sbjct: 447 ARIADVREIAAETEGSSLDITVVSQPVNSHHEQDVSSSNQP 487

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460032|ref|XP_004147750.1| PREDICTED: uncharacterized protein LOC101215308 [Cucumis sativus]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/95 (70%), Positives = 74/95 (77%), Gaps = 9/95 (9%)

Query: 8   TKDVDLSDENVDKACLSVSRAVPEPGASVVHMTVDQVNLQPIGDGEWSDIQATEARIADV 67
           TK VD SD+NVDKACLS SRA+P  G         +VNLQPIGDGEWSDIQ TEARIADV
Sbjct: 405 TKHVDSSDDNVDKACLSDSRAIPVSG---------EVNLQPIGDGEWSDIQTTEARIADV 455

Query: 68  REVAPETEGSSLDIPVVSPPVNNHHEQGTNSFHQP 102
           RE+A ETEGSSLDI VVS PVN+HHEQ  +S +QP
Sbjct: 456 REIAAETEGSSLDITVVSQPVNSHHEQDVSSSNQP 490

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326505758|dbj|BAJ95550.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326510551|dbj|BAJ87492.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 68/95 (71%), Gaps = 1/95 (1%)

Query: 2   DNSLPQTKDVDLSDENVDKACLSVSRAVPEPGASV-VHMTVDQVNLQPIGDGEWSDIQAT 60
           DNS P TK VD SD++VDKAC+S SR+V     S  V + VD V+++PIGD  W   Q +
Sbjct: 401 DNSPPLTKHVDASDDDVDKACVSDSRSVLVSSESTEVQLAVDGVDIRPIGDPVWGGFQQS 460

Query: 61  EARIADVREVAPETEGSSLDIPVVSPPVNNHHEQG 95
           EA IADVREV+PE EGSSLDIPVV+PP  N H QG
Sbjct: 461 EALIADVREVSPEAEGSSLDIPVVNPPPANDHMQG 495

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
TAIR|locus:2052831	504	SWAP70 [Arabidopsis thaliana (	0.941	0.190	0.556	4.4e-22

TAIR|locus:2052831 SWAP70 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 4.4e-22, P = 4.4e-22
 Identities = 59/106 (55%), Positives = 78/106 (73%)

Query:     4 SLPQTKDVDLSDENVDKACLSVSRAVPEPGASVVHMTVDQV-NLQP-IGDGEWSDIQATE 61
             SLP TK+   +++NVDKACLS+SR    PG +VVHM+ +QV N QP +G+ EW+DIQATE
Sbjct:   402 SLPMTKE---TEKNVDKACLSISRTASIPGENVVHMSEEQVVNAQPPVGENEWNDIQATE 458

Query:    62 ARIADVREVAPETEG---SSLDIPVVSPPVN-NHHEQGTNSFH-QP 102
             AR++DVRE++ ETE    +SLDIPVVSP  N   ++  + SFH QP
Sbjct:   459 ARVSDVREISAETERDRRNSLDIPVVSPEPNVPRNDPPSESFHHQP 504


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.127   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      102       102   0.00091  102 3  11 23  0.37    31
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  544 (58 KB)
  Total size of DFA:  118 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.36u 0.17s 11.53t   Elapsed:  00:00:00
  Total cpu time:  11.36u 0.17s 11.53t   Elapsed:  00:00:00
  Start:  Fri May 10 17:04:23 2013   End:  Fri May 10 17:04:23 2013

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018865001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (497 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00