Citrus Sinensis ID: 034193

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHELFVFGVNGVLFLESILHFVANFKYIVCPAIGQLSFMHAKIISDLPSMPRP
Secondary Structure (PSIPRED)
cccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEcccHHHccccccccccHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccEEEEcccHHHHHHHHHHHHHHcHHEEcHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
madlpgymraclHTGKLAFLAILVSGGIVLQILACALynnwwpmltgkphelfVFGVNGVLFLESILHFVANFKYIVCPAIGQLSFMHAKiisdlpsmprp
Flexible Loop (DISEMBL)
MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHELFVFGVNGVLFLESILHFVANFKYIVCPAIGQLSFMHAKIISDLPSMPRP
Low Complexity Region (SEG)
MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHELFVFGVNGVLFLESILHFVANFKYIVCPAIGQLSFMHAKIISDLPSMPRP
Disordered region (IsUnstruct)
*****GYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHELFVFGVNGVLFLESILHFVANFKYIVCPAIGQLSFMHAKIIS********
Disordered Region (DISOPRED)
**DLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHELFVFGVNGVLFLESILHFVANFKYIVCPAIGQLSFMHAKIISDLPS****
Disordered Region (DISEMBL)
MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHELFVFGVNGVLFLESILHFVANFKYIVCPAIGQLSFMHAKIISDLPSMPRP
Disordered Region (DISPRO)
**DLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHELFVFGVNGVLFLESILHFVANFKYIVCPAIGQLSFMHAKIISDLP*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHELFVFGVNGVLFLESILHFVANFKYIVCPAIGQLSFMHAKIISDLPSMPRP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q9AST6	140	Vacuolar protein sorting-	yes	no	0.455	0.328	0.804	4e-16

>sp|Q9AST6|VSP55_ARATH Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 42/46 (91%)

Query: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLT 46
          MAD+PGY+R CL  GK+AFLAILVS GIVLQILACAL+NNWWPML+
Sbjct: 1  MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLS 46

Involved in endosomal protein transport.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
224126349	138	predicted protein [Populus trichocarpa]	0.801	0.586	0.613	3e-19
351722057	137	uncharacterized protein LOC100500037 [Gl	0.762	0.562	0.602	4e-17
388515759	139	unknown [Lotus japonicus]	0.514	0.374	0.807	5e-17
255575728	138	transporter, putative [Ricinus communis]	0.841	0.615	0.569	2e-16
351726824	137	uncharacterized protein LOC100306202 [Gl	0.762	0.562	0.590	4e-16
225427310	138	PREDICTED: vacuolar protein sorting-asso	0.455	0.333	0.891	4e-16
8920616	864	Contains similarity to a hypothetical pr	0.455	0.053	0.804	8e-16
224109750	139	predicted protein [Populus trichocarpa]	0.455	0.330	0.891	2e-15
356565418	138	PREDICTED: vacuolar protein sorting-asso	0.514	0.376	0.75	7e-15
217075745	138	unknown [Medicago truncatula] gi|3885186	0.514	0.376	0.730	9e-15

>gi|224126349|ref|XP_002329532.1| predicted protein [Populus trichocarpa] gi|222870241|gb|EEF07372.1| predicted protein [Populus trichocarpa]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 60/88 (68%), Gaps = 7/88 (7%)

Query: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLT-------GKPHELF 53
          MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLT         P   F
Sbjct: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTVIMYVPLPMPLLFF 60

Query: 54 VFGVNGVLFLESILHFVANFKYIVCPAI 81
          V   +  L  ES   +V   K++   ++
Sbjct: 61 VGSDSSTLLTESDSGWVNATKFLTGASV 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722057|ref|NP_001235951.1| uncharacterized protein LOC100500037 [Glycine max] gi|255628669|gb|ACU14679.1| unknown [Glycine max] gi|255645133|gb|ACU23065.1| unknown [Glycine max] gi|255645166|gb|ACU23081.1| unknown [Glycine max]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 59/83 (71%), Gaps = 6/83 (7%)

Query: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHE------LFV 54
          MADLPGY+RACL+TGKLA LAILVSGGIVLQILACALYNNWWPML+   +       LF 
Sbjct: 1  MADLPGYLRACLNTGKLASLAILVSGGIVLQILACALYNNWWPMLSVLTYVLLPMPLLFF 60

Query: 55 FGVNGVLFLESILHFVANFKYIV 77
           G +  +F ES   +V   K++ 
Sbjct: 61 AGSDDSIFSESDNSWVNFTKFLT 83

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515759|gb|AFK45941.1| unknown [Lotus japonicus]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/52 (80%), Positives = 48/52 (92%)

Query: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHEL 52
          MA+LPGY+R+CL+TGKLAFLAILVSGGIVLQILACALYNNWWPML+   + L
Sbjct: 1  MAELPGYLRSCLNTGKLAFLAILVSGGIVLQILACALYNNWWPMLSAITYVL 52

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575728|ref|XP_002528763.1| transporter, putative [Ricinus communis] gi|223531766|gb|EEF33585.1| transporter, putative [Ricinus communis]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 63/93 (67%), Gaps = 8/93 (8%)

Query: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHE------LFV 54
          MADLPGY+ +CL TGKLA LAILVSGGIVLQILACALYNNWWPMLT   +       LF 
Sbjct: 1  MADLPGYVHSCLQTGKLAALAILVSGGIVLQILACALYNNWWPMLTVIMYVLLPMPLLFF 60

Query: 55 FGVNG-VLFLESILHFVANFKYIV-CPAIGQLS 85
           G +G  LF ES   +V   K++    A+G ++
Sbjct: 61 AGSDGSSLFQESDSRWVNATKFLTGASAVGSIA 93

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726824|ref|NP_001235348.1| uncharacterized protein LOC100306202 [Glycine max] gi|255627853|gb|ACU14271.1| unknown [Glycine max]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 58/83 (69%), Gaps = 6/83 (7%)

Query: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHE------LFV 54
          MADLPGY+ ACL+TGKLA LAILVSGGIVLQILACALYNNWWPML+   +       LF 
Sbjct: 1  MADLPGYLHACLNTGKLASLAILVSGGIVLQILACALYNNWWPMLSVLTYVLLPMPLLFF 60

Query: 55 FGVNGVLFLESILHFVANFKYIV 77
           G +  +F ES   +V   K++ 
Sbjct: 61 AGSDDSIFSESDNSWVNFTKFLT 83

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427310|ref|XP_002282053.1| PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Vitis vinifera] gi|297742157|emb|CBI33944.3| unnamed protein product [Vitis vinifera]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/46 (89%), Positives = 45/46 (97%)

Query: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLT 46
          MADLPG++ ACLH+GKLAFLAILVSGGIVLQILACAL+NNWWPMLT
Sbjct: 1  MADLPGHVLACLHSGKLAFLAILVSGGIVLQILACALFNNWWPMLT 46

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8920616|gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi|7485810 from Arabidopsis thaliana BAC F19I3 gb|AC004238. It contains a PPR repeat domain PF|01535. ESTs gb|AV539170, gb|AV551571, gb|AA597781, gb|AV544524, gb|AV531577 and gb|AV533492 come from this gene [Arabidopsis thaliana]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/46 (80%), Positives = 42/46 (91%)

Query: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLT 46
          MAD+PGY+R CL  GK+AFLAILVS GIVLQILACAL+NNWWPML+
Sbjct: 1  MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLS 46

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109750|ref|XP_002333205.1| predicted protein [Populus trichocarpa] gi|224138848|ref|XP_002326705.1| predicted protein [Populus trichocarpa] gi|222834027|gb|EEE72504.1| predicted protein [Populus trichocarpa] gi|222835094|gb|EEE73543.1| predicted protein [Populus trichocarpa]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/46 (89%), Positives = 41/46 (89%)

Query: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLT 46
          M DLPGYM ACL TGKL FLAILVSGGI LQILACALYNNWWPMLT
Sbjct: 2  MPDLPGYMWACLRTGKLPFLAILVSGGIALQILACALYNNWWPMLT 47

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565418|ref|XP_003550937.1| PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Glycine max]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 43/52 (82%)

Query: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHEL 52
          MA+LPGY R CL+TGKL  L ILVSGG+VLQILACALYNNWWPMLT   + L
Sbjct: 1  MAELPGYFRYCLNTGKLVLLGILVSGGVVLQILACALYNNWWPMLTAITYVL 52

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075745|gb|ACJ86232.1| unknown [Medicago truncatula] gi|388518625|gb|AFK47374.1| unknown [Medicago truncatula]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 44/52 (84%)

Query: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGKPHEL 52
          M D+PGY+R C +TGKL FLA+LVSGGIVLQILACALYNNWWPML+   + L
Sbjct: 1  MDDIPGYVRYCFNTGKLLFLALLVSGGIVLQILACALYNNWWPMLSAITYVL 52

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2033729	140	AT1G32410 "AT1G32410" [Arabido	0.841	0.607	0.516	6.7e-17
TAIR|locus:2080732	113	AT3G11530 "AT3G11530" [Arabido	0.425	0.380	0.458	2.4e-05

TAIR|locus:2033729 AT1G32410 "AT1G32410" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 48/93 (51%), Positives = 61/93 (65%)

Query:     1 MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTG-----KPHELFVF 55
             MAD+PGY+R CL  GK+AFLAILVS GIVLQILACAL+NNWWPML+       P  L  F
Sbjct:     1 MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFF 60

Query:    56 GVNGV--LFLESILHFVANFKYIV-CPAIGQLS 85
             G +    LF ES   ++   K++    A+G ++
Sbjct:    61 GGSDSTSLFNESDNSWINAAKFLTGASAVGSVA 93

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2080732 AT3G11530 "AT3G11530" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 22/48 (45%), Positives = 26/48 (54%)

Query:    23 LVSGGIVLQILACALYNNWWPMLTGK-----PHELFVFGVNGVLFLES 65
             + S  I+LQILACA+Y NWWPML+       P     FG     FL S
Sbjct:     1 MFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLIS 48


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.145   0.478    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      101       101   0.00091  102 3  11 21  0.45    29
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  120 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.71u 0.13s 10.84t   Elapsed:  00:00:01
  Total cpu time:  10.71u 0.13s 10.84t   Elapsed:  00:00:01
  Start:  Fri May 10 17:26:05 2013   End:  Fri May 10 17:26:06 2013

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9AST6	VSP55_ARATH	No assigned EC number	0.8043	0.4554	0.3285	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_1180138 hypothetical protein (138 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	101
pfam04133	120	pfam04133, Vps55, Vacuolar protein sorting 55	9e-09

>gnl|CDD|217917 pfam04133, Vps55, Vacuolar protein sorting 55

 Score = 48.7 bits (117), Expect = 9e-09
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query: 17 LAFLAILVSGGIVLQILACALYNNWWPML 45
          L  L+ L++ G +L ILACALYNNWWP+ 
Sbjct: 1  LIGLSFLLAVGFLLLILACALYNNWWPLF 29

Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PF04133	120	Vps55: Vacuolar protein sorting 55 ; InterPro: IPR	99.97
KOG2174	131	consensus Leptin receptor gene-related protein [Si	99.97

>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase

Probab=99.97  E-value=7.5e-32  Score=191.97  Aligned_cols=78  Identities=27%  Similarity=0.418  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCchhceecc-----cccceeee---cCCCcccCcchhHHHHHHHHHH-HHHHHHH--
Q 034193           17 LAFLAILVSGGIVLQILACALYNNWWPMLTGK-----PHELFVFG---VNGVLFLESILHFVANFKYIVC-PAIGQLS--   85 (101)
Q Consensus        17 lI~Ls~~laiG~lLvILaCAL~~nwwPl~vv~-----PlP~~I~~---~~~df~~~~~~~~~d~~~FlT~-lvvSg~a--   85 (101)
                      ||+||+++|+|++|+|||||||||||||++++     |+|++|++   +++||++++++ ++|+++|+|| +||||+|  
T Consensus         1 lI~Ls~~~aiG~lL~IL~CAL~~nw~PL~v~~~y~laPiP~~i~~~~~~~~~~~~~~~~-~~d~~~FlT~~~vvSg~aLP   79 (120)
T PF04133_consen    1 LIGLSFFLAIGFLLVILSCALYKNWWPLFVVLFYVLAPIPNLIARRYSSDDDFSSDSGS-CQDFGKFLTGFLVVSGFALP   79 (120)
T ss_pred             CeehHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhHHHHCCCCCCcccccCcch-HHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999998     99999994   45566666554 9999999999 9999999  


Q ss_pred             --HhhhccccCC
Q 034193           86 --FMHAKIISDL   95 (101)
Q Consensus        86 --LaHa~iI~~~   95 (101)
                        |||+++|++.
T Consensus        80 ~VL~H~~~I~~~   91 (120)
T PF04133_consen   80 IVLAHAGIIQWG   91 (120)
T ss_pred             HHHHhhhhhHHH
Confidence              9999999874

Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].

>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]

Probab=99.97  E-value=3.4e-31  Score=191.46  Aligned_cols=84  Identities=26%  Similarity=0.449  Sum_probs=75.3

Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHHHHHhhCCchhceecc-----cccceee--e-cCCCcccCcchhHHHHHHHHHH-H
Q 034193            9 RACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTGK-----PHELFVF--G-VNGVLFLESILHFVANFKYIVC-P   79 (101)
Q Consensus         9 ~a~lk~~~lI~Ls~~laiG~lLvILaCAL~~nwwPl~vv~-----PlP~~I~--~-~~~df~~~~~~~~~d~~~FlT~-l   79 (101)
                      |+++|  ++++||+.+|+|++|+||+|||++||||||+++     |+||.++  + .++| +++++++|+|+|+|+|| +
T Consensus         1 M~~vk--~i~~Lsf~~a~G~~l~iL~CAL~~nwwPlf~~~~yvl~PiP~l~f~a~~~~~d-~~~~~~~~idlA~FlTg~~   77 (131)
T KOG2174|consen    1 MAGVK--AIAGLSFAGAVGLLLLILGCALFRNWWPLFVILFYVLSPIPNLLFIAGRTQHD-FDATSDACIDLAKFLTGAI   77 (131)
T ss_pred             CCccH--HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHhcCCchHHhccccceec-ccccccHHHHHHHHHhcch
Confidence            57889  999999999999999999999999999999997     9998877  3 3444 45556699999999999 9


Q ss_pred             HHHHHH----HhhhccccCC
Q 034193           80 AIGQLS----FMHAKIISDL   95 (101)
Q Consensus        80 vvSg~a----LaHa~iI~~~   95 (101)
                      ||||||    |+|+++|++.
T Consensus        78 vvs~falPiVl~ha~lI~~g   97 (131)
T KOG2174|consen   78 VVSAFALPIVLAHAGLIGWG   97 (131)
T ss_pred             hhhhhhhHHHHHHhhHhhhh
Confidence            999999    9999999874

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00