Citrus Sinensis ID: 034289


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNVSLKNLVCSFEIL
cccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHccEEcEEEc
ccEEEEEccccccccHHHHHHHHHHccccccccccccccccccccccccccccEcEEEEccccccccccccccccccccccccHHHccccccEEccEEc
mvgifsrfsvgraghrrtqsaiderevlppnpavtgavpgtatTAAAAGAHGIQAavefkpvehpiepldndlpiqcplpepsilnvslknlvcsfeil
mvgifsrfsvgraghrrtqsaiderevlppnpAVTGAVPGTATTAAAAGAHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNVSLKNLVCSFEIL
MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPavtgavpgtattaaaagahgiqaavEFKPVEHPIEPLDNDLPIQCPLPEPSILNVSLKNLVCSFEIL
******************************************TTAAAAGAHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNVSLKNLVCSFE**
**GIFS*FSV**********************************AAAAGAHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNVSLKNLVCSFEIL
MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNVSLKNLVCSFEIL
*VGIFS*FSVG**************************************AHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNVSLKNLVCSFEIL
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
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MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNVSLKNLVCSFEIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query99
224139046152 predicted protein [Populus trichocarpa] 0.818 0.532 0.790 2e-28
449456751138 PREDICTED: uncharacterized protein LOC10 0.818 0.586 0.744 2e-27
147843797154 hypothetical protein VITISV_022546 [Viti 0.858 0.551 0.755 1e-26
359807636151 uncharacterized protein LOC100791210 [Gl 0.828 0.543 0.755 2e-26
255555925115 conserved hypothetical protein [Ricinus 0.939 0.808 0.707 2e-26
225427063154 PREDICTED: uncharacterized protein LOC10 0.858 0.551 0.744 3e-26
18398194158 uncharacterized protein [Arabidopsis tha 0.828 0.518 0.720 6e-26
297851628158 hypothetical protein ARALYDRAFT_473384 [ 0.828 0.518 0.709 2e-25
297823351155 hypothetical protein ARALYDRAFT_902663 [ 0.818 0.522 0.709 3e-25
356531471151 PREDICTED: uncharacterized protein LOC10 0.828 0.543 0.732 4e-25
>gi|224139046|ref|XP_002326754.1| predicted protein [Populus trichocarpa] gi|222834076|gb|EEE72553.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/86 (79%), Positives = 70/86 (81%), Gaps = 5/86 (5%)

Query: 1  MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFK 60
          MVGIFSRFSVGR GHRRTQSA+DEREVLPPN  VTGA         AA  HGI+ AVEFK
Sbjct: 1  MVGIFSRFSVGRGGHRRTQSALDEREVLPPNADVTGA-----AAVVAAAPHGIEVAVEFK 55

Query: 61 PVEHPIEPLDNDLPIQCPLPEPSILN 86
          PVEHPIEPLDND PIQCPLPEPSILN
Sbjct: 56 PVEHPIEPLDNDQPIQCPLPEPSILN 81




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456751|ref|XP_004146112.1| PREDICTED: uncharacterized protein LOC101208810 isoform 1 [Cucumis sativus] gi|449509510|ref|XP_004163609.1| PREDICTED: uncharacterized LOC101208810 isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|147843797|emb|CAN79460.1| hypothetical protein VITISV_022546 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359807636|ref|NP_001241166.1| uncharacterized protein LOC100791210 [Glycine max] gi|255638588|gb|ACU19601.1| unknown [Glycine max] gi|255638658|gb|ACU19634.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255555925|ref|XP_002518998.1| conserved hypothetical protein [Ricinus communis] gi|223541985|gb|EEF43531.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225427063|ref|XP_002274901.1| PREDICTED: uncharacterized protein LOC100257507 [Vitis vinifera] gi|297742009|emb|CBI33796.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|18398194|ref|NP_564386.1| uncharacterized protein [Arabidopsis thaliana] gi|17978974|gb|AAL47448.1| At1g31940/F5M6.6 [Arabidopsis thaliana] gi|20334862|gb|AAM16187.1| At1g31940/F5M6.6 [Arabidopsis thaliana] gi|21554317|gb|AAM63422.1| unknown [Arabidopsis thaliana] gi|332193299|gb|AEE31420.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297851628|ref|XP_002893695.1| hypothetical protein ARALYDRAFT_473384 [Arabidopsis lyrata subsp. lyrata] gi|297339537|gb|EFH69954.1| hypothetical protein ARALYDRAFT_473384 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297823351|ref|XP_002879558.1| hypothetical protein ARALYDRAFT_902663 [Arabidopsis lyrata subsp. lyrata] gi|297325397|gb|EFH55817.1| hypothetical protein ARALYDRAFT_902663 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356531471|ref|XP_003534301.1| PREDICTED: uncharacterized protein LOC100804987 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query99
TAIR|locus:2034441158 AT1G31940 [Arabidopsis thalian 0.828 0.518 0.627 1.4e-23
TAIR|locus:505006293156 AT2G35585 "AT2G35585" [Arabido 0.818 0.519 0.593 2.7e-20
TAIR|locus:1009023183138 AT2G01913 "AT2G01913" [Arabido 0.282 0.202 0.607 6.3e-05
TAIR|locus:2034441 AT1G31940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 54/86 (62%), Positives = 58/86 (67%)

Query:     1 MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPXXXXXXXXXXXXXXXXXXXXXXXXXEFK 60
             MVGIFSRFSVGR+ HRRTQSAID++EVL PN                          EFK
Sbjct:     1 MVGIFSRFSVGRSTHRRTQSAIDDKEVLAPN----SDVIAATTTTATTATHGIEVATEFK 56

Query:    61 PVEHPIEPLDNDLPIQCPLPEPSILN 86
             PVEHP+EPLDNDLPIQCPLPEPSILN
Sbjct:    57 PVEHPVEPLDNDLPIQCPLPEPSILN 82




GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:505006293 AT2G35585 "AT2G35585" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1009023183 AT2G01913 "AT2G01913" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00