Citrus Sinensis ID: 034317

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mgavegyriaggplgevtdplypggsfdplgladdpEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTgkgplenladhladpvnnnawayatnfvpgk
Flexible Loop (DISEMBL)
mgavegyriaggplgeVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Low Complexity Region (SEG)
MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Disordered region (IsUnstruct)
*******RIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFV***
Disordered Region (DISOPRED)
MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP**
Disordered Region (DISEMBL)
MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Disordered Region (DISPRO)
MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
P14275	265	Chlorophyll a-b binding p	N/A	no	1.0	0.369	0.969	6e-51
P12331	261	Chlorophyll a-b binding p	yes	no	1.0	0.375	0.989	6e-51
P08221	255	Chlorophyll a-b binding p	N/A	no	1.0	0.384	0.979	9e-51
P07369	267	Chlorophyll a-b binding p	N/A	no	1.0	0.367	0.979	9e-51
P12330	265	Chlorophyll a-b binding p	no	no	1.0	0.369	0.979	1e-50
P14276	267	Chlorophyll a-b binding p	N/A	no	1.0	0.367	0.959	1e-50
P14277	267	Chlorophyll a-b binding p	N/A	no	1.0	0.367	0.959	1e-50
P04783	267	Chlorophyll a-b binding p	N/A	no	1.0	0.367	0.969	1e-50
P15194	274	Chlorophyll a-b binding p	N/A	no	1.0	0.357	0.969	1e-50
P27495	267	Chlorophyll a-b binding p	N/A	no	1.0	0.367	0.969	1e-50

>sp|P14275|CB2C_SOLLC Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1

 Score =  199 bits (505), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 95/98 (96%), Positives = 97/98 (98%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 227

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 228 FVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Solanum lycopersicum (taxid: 4081)

>sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2

 Score =  199 bits (505), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 97/98 (98%), Positives = 97/98 (98%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 164 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 223

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 224 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1

 Score =  198 bits (503), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 96/98 (97%), Positives = 98/98 (100%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 158 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 217

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 218 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Cucumis sativus (taxid: 3659)

>sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1

 Score =  198 bits (503), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 96/98 (97%), Positives = 97/98 (98%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 229

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 230 FVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Solanum lycopersicum (taxid: 4081)

>sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/98 (97%), Positives = 97/98 (98%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEV DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 168 MGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 227

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 228 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P14276|CB2E_SOLLC Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/98 (95%), Positives = 97/98 (98%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 229

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct: 230 FVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Solanum lycopersicum (taxid: 4081)

>sp|P14277|CB2F_SOLLC Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/98 (95%), Positives = 97/98 (98%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 229

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct: 230 FVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Solanum lycopersicum (taxid: 4081)

>sp|P04783|CB25_PETSP Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1

 Score =  197 bits (502), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/98 (96%), Positives = 97/98 (98%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 170 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 229

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 230 FVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Petunia sp. (taxid: 4104)

>sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1

 Score =  197 bits (502), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/98 (96%), Positives = 98/98 (100%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 177 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 236

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 237 FVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Pinus sylvestris (taxid: 3349)

>sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1

 Score =  197 bits (502), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/98 (96%), Positives = 97/98 (98%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 170 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 229

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 230 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
225446831	270	PREDICTED: chlorophyll a-b binding prote	1.0	0.362	1.0	5e-50
255548299	267	chlorophyll A/B binding protein, putativ	1.0	0.367	1.0	5e-50
102139977	267	chlorophyll A-B binding protein (CAB), p	1.0	0.367	1.0	6e-50
224068679	266	predicted protein [Populus trichocarpa]	1.0	0.368	1.0	6e-50
102139745	265	chlorophyll A-B binding protein (CAB), p	1.0	0.369	1.0	8e-50
226358409	264	chloroplast chlorophyll A-B binding prot	1.0	0.371	1.0	9e-50
225463428	264	PREDICTED: chlorophyll a-b binding prote	1.0	0.371	1.0	1e-49
225463432	264	PREDICTED: chlorophyll a-b binding prote	1.0	0.371	1.0	1e-49
147857734	264	hypothetical protein VITISV_031287 [Viti	1.0	0.371	1.0	1e-49
353167261	264	chloroplast chlorophyll A/B binding prot	1.0	0.371	1.0	1e-49

>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis vinifera] gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 173 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 232

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 233 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]

 Score =  201 bits (510), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 170 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 229

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 230 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]

 Score =  201 bits (510), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 170 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 229

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 230 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa] gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 169 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 228

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 229 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]

 Score =  200 bits (509), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 168 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 227

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 228 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

Source: Musa acuminata

Species: Musa acuminata

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]

 Score =  200 bits (509), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 167 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 226

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 227 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic isoform 1 [Vitis vinifera] gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic isoform 2 [Vitis vinifera] gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 167 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 226

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 227 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis vinifera]

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 167 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 226

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 227 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 167 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 226

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 227 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 167 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 226

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 227 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264

Source: Canarium album

Species: Canarium album

Genus: Canarium

Family: Burseraceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
UNIPROTKB|P12331	261	CAB2R "Chlorophyll a-b binding	1.0	0.375	0.989	2e-49
UNIPROTKB|P12330	265	CAB1R "Chlorophyll a-b binding	1.0	0.369	0.979	4.1e-49
TAIR|locus:2040934	265	LHB1B2 "photosystem II light h	1.0	0.369	0.919	2.1e-45
TAIR|locus:2040944	266	LHB1B1 "light-harvesting chlor	1.0	0.368	0.919	2.1e-45
TAIR|locus:2019287	267	CAB3 "chlorophyll A/B binding	1.0	0.367	0.909	3.4e-45
TAIR|locus:2019372	267	CAB2 "chlorophyll A/B-binding	1.0	0.367	0.909	3.4e-45
TAIR|locus:2019322	267	CAB1 "chlorophyll A/B binding	1.0	0.367	0.909	3.4e-45
TAIR|locus:2089139	266	LHCB2.3 "photosystem II light	1.0	0.368	0.857	1.3e-43
TAIR|locus:2044988	265	LHCB2.2 "photosystem II light	1.0	0.369	0.857	1.7e-43
TAIR|locus:2042148	265	LHCB2.1 "photosystem II light	0.989	0.366	0.855	5.7e-43

UNIPROTKB|P12331 CAB2R "Chlorophyll a-b binding protein 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 97/98 (98%), Positives = 97/98 (98%)

Query:     1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
             MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct:   164 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 223

Query:    61 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
             FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:   224 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS

GO:0015979 "photosynthesis" evidence=ISS

UNIPROTKB|P12330 CAB1R "Chlorophyll a-b binding protein 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 96/98 (97%), Positives = 97/98 (98%)

Query:     1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
             MGAVEGYRIAGGPLGEV DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct:   168 MGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 227

Query:    61 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
             FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:   228 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS

GO:0015979 "photosynthesis" evidence=ISS

TAIR|locus:2040934 LHB1B2 "photosystem II light harvesting complex gene B1B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 91/99 (91%), Positives = 94/99 (94%)

Query:     1 MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 59
             MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFG
Sbjct:   167 MGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFG 226

Query:    60 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
             FFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   227 FFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0009769 "photosynthesis, light harvesting in photosystem II" evidence=TAS

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016168 "chlorophyll binding" evidence=ISS;TAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0042651 "thylakoid membrane" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015979 "photosynthesis" evidence=ISS

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2040944 LHB1B1 "light-harvesting chlorophyll-protein complex II subunit B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 91/99 (91%), Positives = 94/99 (94%)

Query:     1 MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 59
             MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFG
Sbjct:   168 MGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFG 227

Query:    60 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
             FFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   228 FFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0009769 "photosynthesis, light harvesting in photosystem II" evidence=TAS

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016168 "chlorophyll binding" evidence=ISS;TAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0042651 "thylakoid membrane" evidence=TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015979 "photosynthesis" evidence=ISS

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 90/99 (90%), Positives = 94/99 (94%)

Query:     1 MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 59
             MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFG
Sbjct:   169 MGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFG 228

Query:    60 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
             FFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   229 FFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS;TAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 90/99 (90%), Positives = 94/99 (94%)

Query:     1 MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 59
             MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFG
Sbjct:   169 MGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFG 228

Query:    60 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
             FFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   229 FFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS;TAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009637 "response to blue light" evidence=IEP

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2019322 CAB1 "chlorophyll A/B binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 90/99 (90%), Positives = 94/99 (94%)

Query:     1 MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 59
             MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFG
Sbjct:   169 MGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFG 228

Query:    60 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
             FFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   229 FFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS;TAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0015979 "photosynthesis" evidence=ISS

TAIR|locus:2089139 LHCB2.3 "photosystem II light harvesting complex gene 2.3" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 84/98 (85%), Positives = 91/98 (92%)

Query:     1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
             MG +EGYRI GGPLGE  DPLYPGG+FDPL LA+DPEAF+ELKVKE+KNGRLAMFSMFGF
Sbjct:   169 MGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGF 228

Query:    61 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
             FVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:   229 FVQAIVTGKGPIENLFDHIADPVANNAWAYATNFVPGK 266

GO:0009507 "chloroplast" evidence=ISM

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009637 "response to blue light" evidence=IEP;RCA

GO:0010114 "response to red light" evidence=IEP;RCA

GO:0010218 "response to far red light" evidence=IEP;RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2044988 LHCB2.2 "photosystem II light harvesting complex gene 2.2" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 84/98 (85%), Positives = 91/98 (92%)

Query:     1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
             MG +EGYRI GGPLGE  DPLYPGG+FDPL LA+DPEAF+ELKVKE+KNGRLAMFSMFGF
Sbjct:   168 MGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGF 227

Query:    61 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
             FVQAIVTGKGP+ENL DHLADPV NNAW+YATNFVPGK
Sbjct:   228 FVQAIVTGKGPIENLFDHLADPVANNAWSYATNFVPGK 265

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2042148 LHCB2.1 "photosystem II light harvesting complex gene 2.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 83/97 (85%), Positives = 90/97 (92%)

Query:     1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
             MG +EGYRI GGPLGE  DPLYPGG+FDPL LA+DPEAF+ELKVKE+KNGRLAMFSMFGF
Sbjct:   168 MGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGF 227

Query:    61 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 97
             FVQAIVTGKGP+ENL DHLADPV NNAW+YATNFVPG
Sbjct:   228 FVQAIVTGKGPIENLFDHLADPVANNAWSYATNFVPG 264

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009637 "response to blue light" evidence=IEP

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P08222	CB22_CUCSA	No assigned EC number	0.9795	1.0	0.4757	N/A	no
P08221	CB21_CUCSA	No assigned EC number	0.9795	1.0	0.3843	N/A	no
P12329	CB21_MAIZE	No assigned EC number	0.9690	0.9897	0.3702	N/A	no
P27492	CB21_TOBAC	No assigned EC number	0.9591	1.0	0.3684	N/A	no
P27493	CB22_TOBAC	No assigned EC number	0.9693	1.0	0.3698	N/A	no
P27490	CB28_PEA	No assigned EC number	0.9591	1.0	0.3656	N/A	no
P27491	CB27_TOBAC	No assigned EC number	0.9591	1.0	0.3670	N/A	no
P27496	CB25_TOBAC	No assigned EC number	0.9489	1.0	0.3670	N/A	no
P27497	CB29_MAIZE	No assigned EC number	0.9285	1.0	0.3698	N/A	no
P06671	CB22_MAIZE	No assigned EC number	0.9387	1.0	0.3698	N/A	no
P27495	CB24_TOBAC	No assigned EC number	0.9693	1.0	0.3670	N/A	no
P04778	CB1C_ARATH	No assigned EC number	0.9090	1.0	0.3670	yes	no
P04779	CB21_PETSP	No assigned EC number	0.9591	1.0	0.3684	N/A	no
P07371	CB22_PEA	No assigned EC number	0.9693	1.0	0.3643	N/A	no
P07370	CB2B_SOLLC	No assigned EC number	0.9693	1.0	0.3698	N/A	no
Q00827	CB48_MAIZE	No assigned EC number	0.9081	1.0	0.3712	N/A	no
P12469	CB23_NICPL	No assigned EC number	0.9591	1.0	0.3670	N/A	no
P0CJ48	CB1A_ARATH	No assigned EC number	0.9090	1.0	0.3670	yes	no
P04782	CB24_PETSP	No assigned EC number	0.9693	1.0	0.3684	N/A	no
Q8VZ87	CB1B_ARATH	No assigned EC number	0.9090	1.0	0.3670	yes	no
P24006	CB2A_PYRPY	No assigned EC number	0.9183	1.0	0.3525	N/A	no
P12333	CB2A_SPIOL	No assigned EC number	0.9693	1.0	0.3670	N/A	no
P12331	CB22_ORYSJ	No assigned EC number	0.9897	1.0	0.3754	yes	no
P04784	CB21_WHEAT	No assigned EC number	0.9081	1.0	0.3684	N/A	no
P92919	CB23_APIGR	No assigned EC number	0.9183	1.0	0.3712	N/A	no
P04781	CB23_PETSP	No assigned EC number	0.9591	1.0	0.3670	N/A	no
P04780	CB22_PETSP	No assigned EC number	0.9081	1.0	0.3670	N/A	no
P04783	CB25_PETSP	No assigned EC number	0.9693	1.0	0.3670	N/A	no
P10707	CB2D_SOLLC	No assigned EC number	0.9693	1.0	0.8448	N/A	no
P13851	CB21_SINAL	No assigned EC number	0.9292	1.0	0.3684	N/A	no
P07369	CB2G_SOLLC	No assigned EC number	0.9795	1.0	0.3670	N/A	no
P14274	CB2A_SOLLC	No assigned EC number	0.9693	1.0	0.3698	N/A	no
P14275	CB2C_SOLLC	No assigned EC number	0.9693	1.0	0.3698	N/A	no
P14276	CB2E_SOLLC	No assigned EC number	0.9591	1.0	0.3670	N/A	no
P14277	CB2F_SOLLC	No assigned EC number	0.9591	1.0	0.3670	N/A	no
P12470	CB25_NICPL	No assigned EC number	0.9387	1.0	0.3684	N/A	no
P12471	CB21_SOYBN	No assigned EC number	0.9693	1.0	0.4	yes	no
P15194	CB2B_PINSY	No assigned EC number	0.9693	1.0	0.3576	N/A	no
P15195	CB23_POLMU	No assigned EC number	0.9081	1.0	0.3698	N/A	no
P15193	CB2A_PINSY	No assigned EC number	0.9387	1.0	0.3525	N/A	no
P04159	CB21_PEA	No assigned EC number	0.9387	1.0	0.4298	N/A	no
P08963	CB22_HORVU	No assigned EC number	0.9591	1.0	0.3712	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
PLN00025	262	PLN00025, PLN00025, photosystem II light harvestin	6e-75
PLN00171	324	PLN00171, PLN00171, photosystem light-harvesting c	2e-31
PLN00048	262	PLN00048, PLN00048, photosystem I light harvesting	4e-27
pfam00504	135	pfam00504, Chloroa_b-bind, Chlorophyll A-B binding	2e-26
PLN00147	252	PLN00147, PLN00147, light-harvesting complex I chl	2e-24
PLN00187	286	PLN00187, PLN00187, photosystem II light-harvestin	7e-24
PLN00099	243	PLN00099, PLN00099, light-harvesting complex IChlo	9e-23
PLN00097	244	PLN00097, PLN00097, photosystem I light harvesting	3e-21
PLN00101	250	PLN00101, PLN00101, Photosystem I light-harvesting	6e-17
PLN00098	267	PLN00098, PLN00098, light-harvesting complex I chl	4e-16
PLN00100	246	PLN00100, PLN00100, light-harvesting complex chlor	5e-16
PLN00170	255	PLN00170, PLN00170, photosystem II light-harvestin	1e-05
PLN00120	202	PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi	2e-05
PLN00101	250	PLN00101, PLN00101, Photosystem I light-harvesting	1e-04
PLN00170	255	PLN00170, PLN00170, photosystem II light-harvestin	0.001
PLN00098	267	PLN00098, PLN00098, light-harvesting complex I chl	0.002
PLN00089	209	PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi	0.002

>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional

 Score =  221 bits (565), Expect = 6e-75
 Identities = 91/98 (92%), Positives = 93/98 (94%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYR+ GGPLGE  DPLYPGGSFDPLGLADDP+ FAELKVKEIKNGRLAMFSMFGF
Sbjct: 165 MGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 224

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPV NNAWAYATNFVPGK
Sbjct: 225 FVQAIVTGKGPLENLADHLADPVANNAWAYATNFVPGK 262

Length = 262

>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

 Score =  111 bits (280), Expect = 2e-31
 Identities = 46/71 (64%), Positives = 58/71 (81%), Gaps = 1/71 (1%)

Query: 22  YPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 80
           YPGG+ FDPLGL+ DP AF +LKVKEIKNGRLAM +  GF++QA VTGKGP++NL DHL+
Sbjct: 252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLS 311

Query: 81  DPVNNNAWAYA 91
           DP++NN  +  
Sbjct: 312 DPLHNNLLSSL 322

Length = 324

>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

 Score = 99.2 bits (247), Expect = 4e-27
 Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 14  LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72
           LG   +P YPGG  F+PLG   D ++  ELK+KE+KNGRLAM ++ G+F+QA+VTG GP 
Sbjct: 181 LGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPF 240

Query: 73  ENLADHLADPVNNN 86
           +NL DHLADPVNNN
Sbjct: 241 QNLLDHLADPVNNN 254

Length = 262

>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein

 Score = 94.3 bits (235), Expect = 2e-26
 Identities = 45/68 (66%), Positives = 49/68 (72%), Gaps = 3/68 (4%)

Query: 1   MGAVEGYRIAGG--PLGEVTDPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 57
           MG +E  R  GG  P GE  DP YPGG  FDPLGLA DPE FAELK+KEIKNGRLAM + 
Sbjct: 68  MGFLELARWQGGKAPGGEGGDPGYPGGFGFDPLGLAKDPETFAELKLKEIKNGRLAMIAF 127

Query: 58  FGFFVQAI 65
            GFFVQ +
Sbjct: 128 LGFFVQEL 135

Length = 135

>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

 Score = 92.2 bits (229), Expect = 2e-24
 Identities = 41/69 (59%), Positives = 50/69 (72%), Gaps = 1/69 (1%)

Query: 19  DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 77
           +P YPGG  F+PLGLA D E   + K+KEIKNGRLAM +M GFFVQA VT  GP++NL  
Sbjct: 176 EPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLT 235

Query: 78  HLADPVNNN 86
           HL+DP +  
Sbjct: 236 HLSDPWHKT 244

Length = 252

>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional

 Score = 91.4 bits (227), Expect = 7e-24
 Identities = 42/69 (60%), Positives = 48/69 (69%), Gaps = 4/69 (5%)

Query: 19  DP---LYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 74
           DP   LYPGG  FDPLGLA DPE    L++ EIK+ RLAM +  GF VQA  TGKGPL N
Sbjct: 208 DPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNN 267

Query: 75  LADHLADPV 83
            A HL+DP+
Sbjct: 268 WATHLSDPL 276

Length = 286

>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

 Score = 87.8 bits (217), Expect = 9e-23
 Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 1/66 (1%)

Query: 22  YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLA 80
           YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLA
Sbjct: 166 YPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 225

Query: 81  DPVNNN 86
           DP +NN
Sbjct: 226 DPWHNN 231

Length = 243

>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

 Score = 83.5 bits (206), Expect = 3e-21
 Identities = 39/69 (56%), Positives = 45/69 (65%)

Query: 18  TDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 77
           TD  YP G FD  G A D +  AELK+KEI NGRLAM +  G   QAI TG GP++NL  
Sbjct: 173 TDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFS 232

Query: 78  HLADPVNNN 86
           HLADP +N 
Sbjct: 233 HLADPGHNG 241

Length = 244

>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional

 Score = 72.6 bits (178), Expect = 6e-17
 Identities = 37/64 (57%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 22  YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 81
           YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HL+D
Sbjct: 184 YPGGIFNPLNFAPTEEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 239

Query: 82  PVNN 85
           P +N
Sbjct: 240 PWHN 243

Length = 250

>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

 Score = 70.3 bits (172), Expect = 4e-16
 Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 22  YPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 79
           YPGG  FDP+      PE    L+ KEIKNGRLAM +  GF  QA+ TG+GP+ENL  HL
Sbjct: 193 YPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHL 252

Query: 80  ADPVNNNAWAYATN 93
           ADP + N ++  T+
Sbjct: 253 ADPGHCNVFSAFTS 266

Length = 267

>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

 Score = 69.9 bits (171), Expect = 5e-16
 Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 5/60 (8%)

Query: 27  FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 86
           FDP G+ D PE    +KVKE+KNGRLAM +  G   Q  VTGK PLE L  H+A+P + N
Sbjct: 150 FDPTGM-DSPE----MKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVN 204

Length = 246

>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 30/64 (46%), Positives = 35/64 (54%), Gaps = 11/64 (17%)

Query: 22  YPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 71
           YPGG F DPLGLA          D E    LK+ EIK+ RLAM +M  F+ +A   GK P
Sbjct: 191 YPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTP 249

Query: 72  LENL 75
           L  L
Sbjct: 250 LGAL 253

Length = 255

>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 23 PGGSFDPLGLAD--DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 64
          P G FDPLGL D  D E F  L+  EIK+GR++M ++ G+ V  
Sbjct: 43 PLGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTE 86

Length = 202

>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 20  PLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 70
           P Y  GS      FDPLGLA+DPE        E+ NGR AM  + G  +  + T  G
Sbjct: 63  PGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 119

Length = 250

>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 15  GEVTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 62
           G + DP +  GS      FDPLGL  DP      +  E+ +GR AM ++ G FV
Sbjct: 62  GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 115

Length = 255

>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 27  FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA-------DHL 79
           FDPLGL  DPE        E+ + R AM ++ G  +   +   G +EN +       ++ 
Sbjct: 85  FDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYF 144

Query: 80  ADP 82
           ADP
Sbjct: 145 ADP 147

Length = 267

>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 27  FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 70
           FD L L   D     + K KE+KNGRLAM ++ G    + +TG G
Sbjct: 161 FDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205

Length = 209

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	99.96
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	99.95
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	99.94
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	99.94
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	99.93
PLN00187	286	photosystem II light-harvesting complex II protein	99.93
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	99.92
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	99.92
PLN00171	324	photosystem light-harvesting complex -chlorophyll	99.9
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	99.89
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	99.84
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	99.81
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	99.8
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	99.78
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	99.78
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	99.77
PLN00171	324	photosystem light-harvesting complex -chlorophyll	99.77
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	99.76
PLN00187	286	photosystem II light-harvesting complex II protein	99.76
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	99.76
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	99.74
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	99.74
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	99.7
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	99.69
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	99.66
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	99.66
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	99.64
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	99.52
PHA02337	35	putative high light inducible protein	98.6
PLN00084	214	photosystem II subunit S (PsbS); Provisional	98.17
PLN00014	250	light-harvesting-like protein 3; Provisional	98.12

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=99.96  E-value=1.2e-30  Score=199.79  Aligned_cols=98  Identities=93%  Similarity=1.509  Sum_probs=91.2

Q ss_pred             CceeeeeeccCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHhhc
Q 034317            1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA   80 (98)
Q Consensus         1 ~g~~E~~r~~~~~~~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~~~   80 (98)
                      ||++|.+||.+.+..+..+..||||+|||+||++|+++++++|.+|||||||||+|++|+++|+++||++|++||.+|++
T Consensus       165 mg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hla  244 (262)
T PLN00025        165 MGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA  244 (262)
T ss_pred             HHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhc
Confidence            68999999988655555577899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccccCCCC
Q 034317           81 DPVNNNAWAYATNFVPGK   98 (98)
Q Consensus        81 ~P~~~~~~~~~~~~~p~~   98 (98)
                      ||.++|.+++++++.|++
T Consensus       245 dP~~~n~~~~~~~~~~~~  262 (262)
T PLN00025        245 DPVANNAWAYATNFVPGK  262 (262)
T ss_pred             CccccchhhhhhhcCCCC
Confidence            999999999988899875

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=99.95  E-value=8.7e-28  Score=184.09  Aligned_cols=92  Identities=51%  Similarity=0.879  Sum_probs=81.5

Q ss_pred             CceeeeeeccCCCCC------------C----CCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 034317            1 MGAVEGYRIAGGPLG------------E----VTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ   63 (98)
Q Consensus         1 ~g~~E~~r~~~~~~~------------~----~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~   63 (98)
                      ||++|.+||++...+            .    ..+..||||+ |||+||++|+++++++|++|||||||||+|++|+++|
T Consensus       152 mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q  231 (262)
T PLN00048        152 MGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQ  231 (262)
T ss_pred             hhheeeeccccccCCCcccccccccchhccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhh
Confidence            799999999873110            0    0145799998 9999999999999999999999999999999999999


Q ss_pred             HHhcCCCchhhhHHhhcCCCCCCcccccc
Q 034317           64 AIVTGKGPLENLADHLADPVNNNAWAYAT   92 (98)
Q Consensus        64 e~vtg~gpl~~l~~~~~~P~~~~~~~~~~   92 (98)
                      +++||++|++||.+|++||+++|.+++..
T Consensus       232 ~~~tg~gp~~~L~~hladP~~~ni~~~~~  260 (262)
T PLN00048        232 ALVTGVGPFQNLLDHLADPVNNNVLTNLK  260 (262)
T ss_pred             hhhcCCCHHHHHHHHhcCccccccccccc
Confidence            99999999999999999999999998754

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=99.94  E-value=1.4e-27  Score=182.10  Aligned_cols=93  Identities=49%  Similarity=0.724  Sum_probs=82.0

Q ss_pred             CceeeeeeccCCCC----------------CCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 034317            1 MGAVEGYRIAGGPL----------------GEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ   63 (98)
Q Consensus         1 ~g~~E~~r~~~~~~----------------~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~   63 (98)
                      ||++|.+||.+...                .+..+..||||+ |||+||++|+++++++|++|||||||||+|++|+++|
T Consensus       142 mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q  221 (252)
T PLN00147        142 MGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQ  221 (252)
T ss_pred             HHHHHHHhhccccCCCccccccccccccccccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            68999999876421                122456799999 9999999999999999999999999999999999999


Q ss_pred             HHhcCCCchhhhHHhhcCCCCCCccccccc
Q 034317           64 AIVTGKGPLENLADHLADPVNNNAWAYATN   93 (98)
Q Consensus        64 e~vtg~gpl~~l~~~~~~P~~~~~~~~~~~   93 (98)
                      +++|+++|+++|.+|++||+++|.+++.++
T Consensus       222 ~~vtg~Gp~~nL~~hladP~~~ni~~~~~~  251 (252)
T PLN00147        222 ASVTHTGPIDNLLTHLSDPWHKTIIQTLSH  251 (252)
T ss_pred             HHhcCCChHHHHHHHhcCcccchhhhhhcC
Confidence            999999999999999999999999887543

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=99.94  E-value=6.3e-27  Score=179.73  Aligned_cols=93  Identities=48%  Similarity=0.718  Sum_probs=81.5

Q ss_pred             CceeeeeeccCCCC--------------CCCCCCCCCCcC-ccCCCCCC-CHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 034317            1 MGAVEGYRIAGGPL--------------GEVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQA   64 (98)
Q Consensus         1 ~g~~E~~r~~~~~~--------------~~~~~~~~PGd~-fDPlgl~~-~~~~~~~~r~~ElknGRlAMla~~g~~~~e   64 (98)
                      ||++|.+||++...              ....+..||||+ |||++|.+ |+++++++|.+|||||||||+|++|+++|+
T Consensus       158 mG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~  237 (267)
T PLN00098        158 MGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQA  237 (267)
T ss_pred             HHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            78999999987421              011245799999 99999974 899999999999999999999999999999


Q ss_pred             HhcCCCchhhhHHhhcCCCCCCccccccc
Q 034317           65 IVTGKGPLENLADHLADPVNNNAWAYATN   93 (98)
Q Consensus        65 ~vtg~gpl~~l~~~~~~P~~~~~~~~~~~   93 (98)
                      .+||++|++||.+|++||.++|.+++.+.
T Consensus       238 ~vTG~gPl~nL~~hladP~~~n~~~~~~~  266 (267)
T PLN00098        238 VYTGEGPIENLMAHLADPGHCNVFSAFTS  266 (267)
T ss_pred             hhcCCChHHHHHHHhcCcccccchhhccC
Confidence            99999999999999999999999987653

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=99.93  E-value=7.4e-27  Score=177.46  Aligned_cols=88  Identities=47%  Similarity=0.643  Sum_probs=78.2

Q ss_pred             CceeeeeeccCCCC---------------CCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 034317            1 MGAVEGYRIAGGPL---------------GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI   65 (98)
Q Consensus         1 ~g~~E~~r~~~~~~---------------~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~   65 (98)
                      ||++|.+||.+...               .+..|..|||+.|||+||++|+++++++|.+|||||||||+|++|+++|+.
T Consensus       141 mg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~  220 (244)
T PLN00097        141 FNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAI  220 (244)
T ss_pred             HHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Confidence            78999999987421               011244699999999999999999999999999999999999999999999


Q ss_pred             hcCCCchhhhHHhhcCCCCCCcc
Q 034317           66 VTGKGPLENLADHLADPVNNNAW   88 (98)
Q Consensus        66 vtg~gpl~~l~~~~~~P~~~~~~   88 (98)
                      +||++|++||.+|++||.++|.+
T Consensus       221 vTGkGPl~nL~~HladP~~~n~~  243 (244)
T PLN00097        221 QTGTGPVDNLFSHLADPGHNGIF  243 (244)
T ss_pred             ccCCCHHHHHHHHhcCccccccC
Confidence            99999999999999999999876

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=99.93  E-value=2e-26  Score=178.37  Aligned_cols=89  Identities=49%  Similarity=0.753  Sum_probs=80.9

Q ss_pred             CceeeeeeccCCCCCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHhh
Q 034317            1 MGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL   79 (98)
Q Consensus         1 ~g~~E~~r~~~~~~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~~   79 (98)
                      ||++|.+|+.+..   ..+..||||+ |||+||++|+++++++|.+|||||||||+|++|+++|+.+|+++|++||.+|+
T Consensus       196 mG~~E~~R~~~~~---~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hl  272 (286)
T PLN00187        196 IGYIEFQRNAELD---PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHL  272 (286)
T ss_pred             HHHHHhhhccCCC---CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence            7899999997632   2356799997 99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccccc
Q 034317           80 ADPVNNNAWAYAT   92 (98)
Q Consensus        80 ~~P~~~~~~~~~~   92 (98)
                      +||.++|.++...
T Consensus       273 adp~~~n~~~~~~  285 (286)
T PLN00187        273 SDPLHTTIIDTFS  285 (286)
T ss_pred             cCcccccHHHhcc
Confidence            9999999887643

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=99.92  E-value=3.5e-26  Score=174.32  Aligned_cols=87  Identities=45%  Similarity=0.649  Sum_probs=74.7

Q ss_pred             CceeeeeeccCCC----CC----------CCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 034317            1 MGAVEGYRIAGGP----LG----------EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV   66 (98)
Q Consensus         1 ~g~~E~~r~~~~~----~~----------~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~v   66 (98)
                      ||++|.+||++..    ..          ...|..|||+.||||||+++    ++++++|||||||||+|++|+++|+.+
T Consensus       149 mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~v  224 (250)
T PLN00101        149 FHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNV  224 (250)
T ss_pred             HHHHHHHHhhcccCCCcccccccccccccCCccccCCCCccCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehc
Confidence            6899999998642    00          11255799999999999865    368999999999999999999999999


Q ss_pred             cCCCchhhhHHhhcCCCCCCccccc
Q 034317           67 TGKGPLENLADHLADPVNNNAWAYA   91 (98)
Q Consensus        67 tg~gpl~~l~~~~~~P~~~~~~~~~   91 (98)
                      ||++|++||.+|++||.++|.+++.
T Consensus       225 TG~gPi~nL~~hladP~~~ni~~~~  249 (250)
T PLN00101        225 TGKGPFENLLQHLSDPWHNTIVQTL  249 (250)
T ss_pred             cCCChHHHHHHHhcCCcccchhhhc
Confidence            9999999999999999999988753

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=99.92  E-value=1.4e-25  Score=170.46  Aligned_cols=87  Identities=53%  Similarity=0.838  Sum_probs=76.2

Q ss_pred             CceeeeeeccCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HhcCCCchhhhHHhh
Q 034317            1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENLADHL   79 (98)
Q Consensus         1 ~g~~E~~r~~~~~~~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e-~vtg~gpl~~l~~~~   79 (98)
                      ||++|.+|+...   ...+..||||.|||+||++|+++++++|.+|||||||||+|++|+++|+ .+||++|+++|.+|+
T Consensus       148 ig~~E~~r~~~~---~~~~~~yPGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hl  224 (243)
T PLN00099        148 IAFVEHQRSMEK---DPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL  224 (243)
T ss_pred             HHHHHHHhhccC---CCCCCcCCCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHh
Confidence            578898887432   1124679999999999999999999999999999999999999999998 579999999999999


Q ss_pred             cCCCCCCcccc
Q 034317           80 ADPVNNNAWAY   90 (98)
Q Consensus        80 ~~P~~~~~~~~   90 (98)
                      +||.++|..+-
T Consensus       225 adp~~~N~~~~  235 (243)
T PLN00099        225 ADPWHNNIGDI  235 (243)
T ss_pred             cCCccCceeee
Confidence            99999997763

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=99.90  E-value=3.4e-24  Score=168.02  Aligned_cols=90  Identities=58%  Similarity=0.910  Sum_probs=78.9

Q ss_pred             CceeeeeeccCCCC----CC--CCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchh
Q 034317            1 MGAVEGYRIAGGPL----GE--VTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE   73 (98)
Q Consensus         1 ~g~~E~~r~~~~~~----~~--~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~   73 (98)
                      |+++|.+||.+...    +.  ..|..|||++ |||+||++|+++++++|.+|||||||||+|++|+++|+.+||++|++
T Consensus       225 m~g~E~~R~~~~~~~~~~g~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPle  304 (324)
T PLN00171        225 MVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQ  304 (324)
T ss_pred             hhhhhheeeccccccCCccccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHH
Confidence            56789999987421    11  1245688887 99999999999999999999999999999999999999999999999


Q ss_pred             hhHHhhcCCCCCCcccc
Q 034317           74 NLADHLADPVNNNAWAY   90 (98)
Q Consensus        74 ~l~~~~~~P~~~~~~~~   90 (98)
                      ++.+|++||.++|.+++
T Consensus       305 nL~~hladP~~~Ni~~~  321 (324)
T PLN00171        305 NLVDHLSDPLHNNLLSS  321 (324)
T ss_pred             HHHHHhcCccccchHHH
Confidence            99999999999998875

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=99.89  E-value=4.1e-24  Score=162.58  Aligned_cols=83  Identities=41%  Similarity=0.582  Sum_probs=72.9

Q ss_pred             CceeeeeeccCCCCCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHhh
Q 034317            1 MGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL   79 (98)
Q Consensus         1 ~g~~E~~r~~~~~~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~~   79 (98)
                      ||++|.+||.+....  .+...|||+ |||+||++     +++|.+|||||||||+|++|+++|+.+||++|+++|.+|+
T Consensus       125 ~g~~E~~r~~~~~~~--g~~~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hl  197 (246)
T PLN00100        125 MAVLEAARYRGFMKT--GESGVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHM  197 (246)
T ss_pred             HHHHhhhcccccccc--cccCCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhc
Confidence            689999999865321  235578999 99999963     5789999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccc
Q 034317           80 ADPVNNNAWAY   90 (98)
Q Consensus        80 ~~P~~~~~~~~   90 (98)
                      ++|.++|.+++
T Consensus       198 adP~~~ni~~~  208 (246)
T PLN00100        198 ANPGHVNIFTS  208 (246)
T ss_pred             cCCcccccccC
Confidence            99999999875

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=99.84  E-value=1.8e-21  Score=148.85  Aligned_cols=74  Identities=47%  Similarity=0.630  Sum_probs=63.4

Q ss_pred             CceeeeeeccCCCCC--------------------CCCCCCCCCcC-ccCCCCCC---------CHHHHHHHHHHHHhcc
Q 034317            1 MGAVEGYRIAGGPLG--------------------EVTDPLYPGGS-FDPLGLAD---------DPEAFAELKVKEIKNG   50 (98)
Q Consensus         1 ~g~~E~~r~~~~~~~--------------------~~~~~~~PGd~-fDPlgl~~---------~~~~~~~~r~~ElknG   50 (98)
                      ||++|.+||++...+                    ...+..|||+. |||+||++         |+++++++|.+|||||
T Consensus       150 mg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnG  229 (255)
T PLN00170        150 MGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHA  229 (255)
T ss_pred             hhhhhheeeccccCCcccccccccccccccccccccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhh
Confidence            899999999874211                    11245699987 99999985         7899999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCCchhhh
Q 034317           51 RLAMFSMFGFFVQAIVTGKGPLENL   75 (98)
Q Consensus        51 RlAMla~~g~~~~e~vtg~gpl~~l   75 (98)
                      ||||+|++|+++|. .||++|+++|
T Consensus       230 RLAMlA~lGf~~Qa-~~g~~p~~~l  253 (255)
T PLN00170        230 RLAMVAMLIFYFEA-GQGKTPLGAL  253 (255)
T ss_pred             HHHHHHHHhHheee-ccCCCchhhh
Confidence            99999999999999 7999999876

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=99.81  E-value=5.2e-20  Score=141.59  Aligned_cols=60  Identities=33%  Similarity=0.522  Sum_probs=56.4

Q ss_pred             CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchh
Q 034317           14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE   73 (98)
Q Consensus        14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~   73 (98)
                      .++++|+++|||+ |||+||++|+++++++|++||+||||||+|++|+++||++++.++++
T Consensus        71 ~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~  131 (267)
T PLN00098         71 PPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIE  131 (267)
T ss_pred             CCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence            5889999999999 99999999999999999999999999999999999999998877654

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=99.80  E-value=9.7e-20  Score=139.01  Aligned_cols=59  Identities=36%  Similarity=0.598  Sum_probs=56.3

Q ss_pred             CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCch
Q 034317           14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL   72 (98)
Q Consensus        14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl   72 (98)
                      .++++|+++|||+ |||+||++|+++++++|++||+||||||||++|++++|++++.+++
T Consensus        62 ~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~  121 (250)
T PLN00101         62 SPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII  121 (250)
T ss_pred             CCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence            5789999999999 9999999999999999999999999999999999999999988775

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=99.78  E-value=1.7e-19  Score=134.64  Aligned_cols=55  Identities=38%  Similarity=0.463  Sum_probs=50.7

Q ss_pred             CCCCCCcC-ccCCCCC-CCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchh
Q 034317           19 DPLYPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE   73 (98)
Q Consensus        19 ~~~~PGd~-fDPlgl~-~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~   73 (98)
                      ++++|||+ |||++|. +|+++++++|.+|||||||||+|++|+++|+.+||+++++
T Consensus       152 ~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~  208 (209)
T PLN00089        152 FDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFPY  208 (209)
T ss_pred             CCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence            35799999 9999995 6899999999999999999999999999999999998754

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=99.78  E-value=4e-19  Score=135.26  Aligned_cols=58  Identities=29%  Similarity=0.425  Sum_probs=55.2

Q ss_pred             CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCc
Q 034317           14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   71 (98)
Q Consensus        14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gp   71 (98)
                      .++++|+++|||+ |||+||++|+++++++|++||+||||||||++|+++||++++.+.
T Consensus        53 ~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~  111 (244)
T PLN00097         53 AAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM  111 (244)
T ss_pred             CccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence            5889999999999 999999999999999999999999999999999999999988764

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=99.77  E-value=4.1e-19  Score=135.74  Aligned_cols=58  Identities=29%  Similarity=0.448  Sum_probs=54.3

Q ss_pred             CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCc
Q 034317           14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   71 (98)
Q Consensus        14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gp   71 (98)
                      .++++|+++|||+ |||+||++|+++++++|++|||||||||+|++|+++||+++..+.
T Consensus        54 ~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~  112 (252)
T PLN00147         54 PPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGI  112 (252)
T ss_pred             CCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence            5789999999999 999999999999999999999999999999999999999876653

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=99.77  E-value=5.2e-19  Score=138.91  Aligned_cols=58  Identities=29%  Similarity=0.422  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCc
Q 034317           14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   71 (98)
Q Consensus        14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gp   71 (98)
                      .++++|+++|||+ |||+||++|+++++++|++|||||||||||++|++++|++++.+.
T Consensus       119 ~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~  177 (324)
T PLN00171        119 YPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA  177 (324)
T ss_pred             CCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence            5789999999999 999999999999999999999999999999999999999876654

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=99.76  E-value=7.8e-19  Score=134.80  Aligned_cols=57  Identities=28%  Similarity=0.507  Sum_probs=53.4

Q ss_pred             CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCC
Q 034317           14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG   70 (98)
Q Consensus        14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~g   70 (98)
                      .++++|+++|||+ |||+||++|+++++++|++||+||||||||++|++++|++++.+
T Consensus        62 ~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g  119 (262)
T PLN00025         62 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG  119 (262)
T ss_pred             CcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence            4678999999999 99999999999999999999999999999999999999988654

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=99.76  E-value=6.7e-19  Score=136.51  Aligned_cols=56  Identities=30%  Similarity=0.456  Sum_probs=52.0

Q ss_pred             CCCCCCCCCCCcC-ccCCCCCCCHHH-------------------------------------------HHHHHHHHHhc
Q 034317           14 LGEVTDPLYPGGS-FDPLGLADDPEA-------------------------------------------FAELKVKEIKN   49 (98)
Q Consensus        14 ~~~~~~~~~PGd~-fDPlgl~~~~~~-------------------------------------------~~~~r~~Elkn   49 (98)
                      .++++||++|||| |||+||+++|+.                                           ++|+|++||+|
T Consensus        61 ~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiH  140 (286)
T PLN00187         61 APEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIH  140 (286)
T ss_pred             CcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhh
Confidence            5889999999999 999999998885                                           59999999999


Q ss_pred             chhHHHHHHHHHHHHHhcCC
Q 034317           50 GRLAMFSMFGFFVQAIVTGK   69 (98)
Q Consensus        50 GRlAMla~~g~~~~e~vtg~   69 (98)
                      |||||||++|++++|++++.
T Consensus       141 GRwAMLAvaG~lvpEll~G~  160 (286)
T PLN00187        141 GRWAMLATLGALSVEALTGV  160 (286)
T ss_pred             hHHHHHHhhchhhHHhccCC
Confidence            99999999999999998653

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=99.76  E-value=1.3e-18  Score=133.06  Aligned_cols=64  Identities=33%  Similarity=0.435  Sum_probs=57.6

Q ss_pred             eeccCCC-------CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCC
Q 034317            7 YRIAGGP-------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG   70 (98)
Q Consensus         7 ~r~~~~~-------~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~g   70 (98)
                      ++|.+..       .++++++++|||+ |||++|++|+++++++|++||+||||||+|++|+++++++++..
T Consensus        52 k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~  123 (255)
T PLN00170         52 KSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP  123 (255)
T ss_pred             ccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCC
Confidence            4676643       4788999999999 99999999999999999999999999999999999999988754

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=99.74  E-value=2e-18  Score=131.37  Aligned_cols=55  Identities=31%  Similarity=0.415  Sum_probs=52.2

Q ss_pred             CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcC
Q 034317           14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG   68 (98)
Q Consensus        14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg   68 (98)
                      .++++|++.|||+ |||++|++++++++++|++|||||||||||++|++++|.++.
T Consensus        53 ~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~  108 (243)
T PLN00099         53 RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL  108 (243)
T ss_pred             CCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence            6889999999999 999999999999999999999999999999999999999754

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=99.74  E-value=2.4e-18  Score=131.06  Aligned_cols=56  Identities=32%  Similarity=0.441  Sum_probs=52.6

Q ss_pred             CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC
Q 034317           14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK   69 (98)
Q Consensus        14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~   69 (98)
                      .++++|+++|||+ |||++|++++++++++|++||+||||||+|++|++++|+++.+
T Consensus        44 ~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P  100 (246)
T PLN00100         44 APKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGLP  100 (246)
T ss_pred             CCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhccc
Confidence            4778999999999 9999999999999999999999999999999999999997654

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=99.70  E-value=1.5e-17  Score=127.75  Aligned_cols=61  Identities=33%  Similarity=0.417  Sum_probs=52.7

Q ss_pred             CCCCCCCCCCCCcC-ccCCCCCCCH-----HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchh
Q 034317           13 PLGEVTDPLYPGGS-FDPLGLADDP-----EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE   73 (98)
Q Consensus        13 ~~~~~~~~~~PGd~-fDPlgl~~~~-----~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~   73 (98)
                      ..++|+|+++|||+ |||+||++..     .+.+++|++||+||||||||++|++++|++++.+.+.
T Consensus        50 ~~P~yLdG~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~  116 (262)
T PLN00048         50 QSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIP  116 (262)
T ss_pred             CCccccCCCCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence            36889999999999 9999997421     2457899999999999999999999999998877654

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=99.69  E-value=3.3e-17  Score=115.49  Aligned_cols=54  Identities=44%  Similarity=0.681  Sum_probs=50.0

Q ss_pred             CCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC
Q 034317           15 GEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK   69 (98)
Q Consensus        15 ~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~   69 (98)
                      |++++++.+||+ |||++|++++ +++++|++||+|||+||+|++|++++|++++.
T Consensus         2 p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~   56 (156)
T PF00504_consen    2 PPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF   56 (156)
T ss_dssp             -TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred             cccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence            577899999999 9999999887 89999999999999999999999999998774

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=99.66  E-value=1.9e-17  Score=116.73  Aligned_cols=65  Identities=48%  Similarity=0.770  Sum_probs=53.7

Q ss_pred             CceeeeeeccCCCCC---CCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 034317            1 MGAVEGYRIAGGPLG---EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI   65 (98)
Q Consensus         1 ~g~~E~~r~~~~~~~---~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~   65 (98)
                      ||++|.+|.......   ...+..+|||+ |||+++.+++++++++|.+||+||||||+|++|+++|+.
T Consensus        88 ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~  156 (156)
T PF00504_consen   88 IGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA  156 (156)
T ss_dssp             HHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            467787777654322   13567899999 999999988889999999999999999999999999973

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=99.66  E-value=2.1e-16  Score=118.01  Aligned_cols=56  Identities=34%  Similarity=0.487  Sum_probs=48.5

Q ss_pred             CCCCCCCCCCcC-ccCCCCCC-CHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCc
Q 034317           15 GEVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   71 (98)
Q Consensus        15 ~~~~~~~~PGd~-fDPlgl~~-~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gp   71 (98)
                      ++.+++. .||+ |||+||++ ++++++++|++||||||+||+|++|+++|+.++.++.
T Consensus        47 ~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~  104 (209)
T PLN00089         47 EFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE  104 (209)
T ss_pred             CccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence            3345666 7988 99999985 6788999999999999999999999999999887664

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=99.64  E-value=1.6e-16  Score=118.10  Aligned_cols=68  Identities=18%  Similarity=0.253  Sum_probs=52.1

Q ss_pred             CceeeeeeccCCCCCCCCCCCCCCcC-cc--CCCCCC-CHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCch
Q 034317            1 MGAVEGYRIAGGPLGEVTDPLYPGGS-FD--PLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL   72 (98)
Q Consensus         1 ~g~~E~~r~~~~~~~~~~~~~~PGd~-fD--Plgl~~-~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl   72 (98)
                      +|++|..+++...    .++++|||+ ++  ++||.. |+++++++|++|||||||||+|++|+++|+.++|..|+
T Consensus       127 ig~~E~~~~~~~~----~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~~~~  198 (202)
T PLN00120        127 IGFLELAVMKDIT----GEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVELPI  198 (202)
T ss_pred             HHHHHHHhhcccc----cCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcC
Confidence            3566765543211    136789976 43  566664 78899999999999999999999999999999997664

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=99.52  E-value=4.6e-15  Score=110.28  Aligned_cols=52  Identities=42%  Similarity=0.768  Sum_probs=44.8

Q ss_pred             CCCCcCccCCCCCC--CHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-hcCCCch
Q 034317           21 LYPGGSFDPLGLAD--DPEAFAELKVKEIKNGRLAMFSMFGFFVQAI-VTGKGPL   72 (98)
Q Consensus        21 ~~PGd~fDPlgl~~--~~~~~~~~r~~ElknGRlAMla~~g~~~~e~-vtg~gpl   72 (98)
                      .-|.++|||++|++  |+++++++|++|||||||||+|++|+++|+. ++.++.+
T Consensus        41 ~~p~g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~   95 (202)
T PLN00120         41 QAPLGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDI   95 (202)
T ss_pred             CCCCCCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCcc
Confidence            45778899999973  7899999999999999999999999999997 5555544

>PHA02337 putative high light inducible protein

Probab=98.60  E-value=5e-08  Score=54.49  Aligned_cols=28  Identities=32%  Similarity=0.239  Sum_probs=26.2

Q ss_pred             HHHHhcchhHHHHHHHHHHHHHhcCCCc
Q 034317           44 VKEIKNGRLAMFSMFGFFVQAIVTGKGP   71 (98)
Q Consensus        44 ~~ElknGRlAMla~~g~~~~e~vtg~gp   71 (98)
                      .+|+.|||+||+|++..+..+.+||+++
T Consensus         4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i   31 (35)
T PHA02337          4 EAEIFNGWLAMIGFVAAVGAYATTGQII   31 (35)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence            5899999999999999999999999874

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=98.17  E-value=1.6e-06  Score=64.15  Aligned_cols=40  Identities=40%  Similarity=0.507  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHhc-CCCchhhhH
Q 034317           37 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVT-GKGPLENLA   76 (98)
Q Consensus        37 ~~~~~~r~~ElknGRlAMla~~g~~~~e~vt-g~gpl~~l~   76 (98)
                      ...+..+..|+.|||+||+||+.-++.|.+| |+|+++|+.
T Consensus       130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~  170 (214)
T PLN00084        130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFN  170 (214)
T ss_pred             HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhc
Confidence            3456677789999999999999999999999 999998874

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=98.12  E-value=2.4e-06  Score=65.24  Aligned_cols=37  Identities=30%  Similarity=0.512  Sum_probs=33.3

Q ss_pred             HHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHh
Q 034317           42 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH   78 (98)
Q Consensus        42 ~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~   78 (98)
                      +..+|+-|||+||+||+..++.|.+||.+++.++.+.
T Consensus       159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f  195 (250)
T PLN00014        159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF  195 (250)
T ss_pred             CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence            3569999999999999999999999999999887653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
2bhw_A	232	Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res		2e-51
1vcr_A	232	An Icosahedral Assembly Of Light-Harvesting Chlorop		2e-51
1rwt_A	232	Crystal Structure Of Spinach Major Light-harvesting		1e-50
2wsc_3	276	Improved Model Of Plant Photosystem I Length = 276		1e-19
2wsc_1	241	Improved Model Of Plant Photosystem I Length = 241		2e-18
2o01_1	187	The Structure Of A Plant Photosystem I Supercomplex		2e-18
3pl9_A	243	Crystal Structure Of Spinach Minor Light-Harvesting		2e-17
3lw5_1	170	Improved Model Of Plant Photosystem I Length = 170		4e-17
2o01_3	165	The Structure Of A Plant Photosystem I Supercomplex		5e-16
3lw5_2	176	Improved Model Of Plant Photosystem I Length = 176		8e-14
2o01_2	186	The Structure Of A Plant Photosystem I Supercomplex		1e-13
2o01_4	165	The Structure Of A Plant Photosystem I Supercomplex		2e-13
2wsc_2	269	Improved Model Of Plant Photosystem I Length = 269		4e-13
3lw5_3	172	Improved Model Of Plant Photosystem I Length = 172		6e-13
3lw5_4	166	Improved Model Of Plant Photosystem I Length = 166		2e-11
2wsc_4	251	Improved Model Of Plant Photosystem I Length = 251		2e-11

>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232

Iteration: 1
 Score =  196 bits (499), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/98 (96%), Positives = 97/98 (98%)
Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 135 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 194
Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 195 FVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232

>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232

Iteration: 1
 Score =  196 bits (499), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/98 (96%), Positives = 97/98 (98%)
Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 135 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 194
Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 195 FVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232

>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232

Iteration: 1
 Score =  194 bits (493), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/98 (96%), Positives = 96/98 (97%)
Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 135 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 194
Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct: 195 FVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 232

>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 14  LGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72
           LG   +P YPGG F +PLG   D ++  +LK+KE+KNGRLAM ++ G+FVQA+VTG GP 
Sbjct: 195 LGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPY 254
Query: 73  ENLADHLADPVNNN 86
           +NL DHL DPV+NN
Sbjct: 255 QNLLDHLTDPVHNN 268

>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 22  YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLA 80
           YPGG+FDPLG + DP+   ELKVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLA
Sbjct: 167 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 226
Query: 81  DPVNNN 86
           DP +NN
Sbjct: 227 DPWHNN 232

>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 22  YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLA 80
           YPGG+FDPLG + DP+   ELKVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLA
Sbjct: 119 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 178
Query: 81  DPVNNN 86
           DP +NN
Sbjct: 179 DPWHNN 184

>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 47/66 (71%)
Query: 21  LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 80
           LYPGG+FDPLGLA DPE    L++ EIK+ RLAM    GF VQA VTGKGPL N   HL+
Sbjct: 172 LYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLS 231
Query: 81  DPVNNN 86
           DP++  
Sbjct: 232 DPLHTT 237

>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 22  YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLA 80
           YPGG+FDPLG + DP+   ELKVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLA
Sbjct: 107 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 166
Query: 81  DPVN 84
           DP +
Sbjct: 167 DPWH 170

>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 19  DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 77
           +P YPGG F +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL D
Sbjct: 103 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLD 162
Query: 78  HLA 80
           HLA
Sbjct: 163 HLA 165

>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 18  TDPLYPGG-SFDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 75
           TD  YPGG  FDPLG     P+   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL
Sbjct: 98  TDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 157
Query: 76  ADHLADP 82
             HLADP
Sbjct: 158 FAHLADP 164

>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 18  TDPLYPGG-SFDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 75
           TD  YPGG  FDPLG     P+   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL
Sbjct: 118 TDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 177
Query: 76  ADHLADP 82
             HLADP
Sbjct: 178 FAHLADP 184

>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 13  PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72
           P GEV    YPGG F+PL  A   EA    K KEI NGRLAM +  GF +Q  VTGKGP 
Sbjct: 94  PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPF 146
Query: 73  ENLADHLADPVNNN 86
           +NL  H++DP +N 
Sbjct: 147 DNLLQHISDPWHNT 160

>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 18  TDPLYPGG-SFDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 75
           TD  YPGG  FDPLG     P+   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL
Sbjct: 191 TDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 250
Query: 76  -ADHLADP 82
            A HLADP
Sbjct: 251 FAAHLADP 258

>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Query: 19  DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 74
           +P YPGG F +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +N
Sbjct: 116 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 172

>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 13  PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72
           P GEV    YPGG F+PL  A   EA    K KEI NGRL M +  GF +Q  VTGKGP 
Sbjct: 98  PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGKGPF 149
Query: 73  ENLADHLADPVNNN 86
           +NL  H++DP +N 
Sbjct: 150 DNLLQHISDPWHNT 163

>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 13  PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72
           P GEV    YPGG F+PL  A   EA    K KEI NGRL M +  GF +Q  VTGKGP 
Sbjct: 178 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGKGPF 229
Query: 73  ENLADHLADPVNNN 86
           +NL  H++DP +N 
Sbjct: 230 DNLLQHISDPWHNT 243

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	3e-37
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	5e-06
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	9e-28
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	1e-04
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	2e-25
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	2e-24
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	3e-24
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	3e-06
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	1e-20
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	2e-07

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232

 Score =  124 bits (311), Expect = 3e-37
 Identities = 95/98 (96%), Positives = 97/98 (98%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 135 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 194

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
           FVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 195 FVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232

 Score = 42.3 bits (98), Expect = 5e-06
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 8  RIAGGPLGEVTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 61
          R+          P Y  G       +D  GL+ DPE F++ +  E+ + R AM    G  
Sbjct: 21 RVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSV 80

Query: 62 VQAIVTGKGPLEN 74
             +++  G    
Sbjct: 81 FPELLSRNGVKFG 93

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241

 Score =  100 bits (248), Expect = 9e-28
 Identities = 47/95 (49%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           +  VE  R             YPGG+FDPLG + DP+   ELKVKEIKNGRLA+ +  GF
Sbjct: 149 IAFVEHQRSMEKDPE---KKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGF 205

Query: 61  FV-QAIVTGKGPLENLADHLADPVNNNAWAYATNF 94
            V Q+   G GPLENLA HLADP +NN       F
Sbjct: 206 CVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPF 240

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 21  LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 73
                 FDPLGL + P      K  E+ + R AM ++ G  V   +     ++
Sbjct: 62  APGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVK 114

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243

 Score = 94.0 bits (232), Expect = 2e-25
 Identities = 40/90 (44%), Positives = 50/90 (55%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           +  +           +    LYPGG+FDPLGLA DPE    L++ EIK+ RLAM    GF
Sbjct: 152 VLVIGYIEFQRNAELDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGF 211

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAY 90
            VQA VTGKGPL N   HL+DP++      
Sbjct: 212 AVQAAVTGKGPLNNWVTHLSDPLHTTILDR 241

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276

 Score = 92.5 bits (228), Expect = 2e-24
 Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 1/79 (1%)

Query: 12  GPLGEVTDPLYP-GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 70
             LG   +P YP G  F+PLG   D ++  +LK+KE+KNGRLAM ++ G+FVQA+VTG G
Sbjct: 193 KGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252

Query: 71  PLENLADHLADPVNNNAWA 89
           P +NL DHL DPV+NN   
Sbjct: 253 PYQNLLDHLTDPVHNNILT 271

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269

 Score = 91.3 bits (225), Expect = 3e-24
 Identities = 42/95 (44%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYP-GGSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMF 58
            G V    I        TD  YP G  FDPLG     P+   EL+ KEIKNGRLAM ++ 
Sbjct: 174 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVM 233

Query: 59  GFFVQAIVTGKGPLENL-ADHLADPVNNNAWAYAT 92
           G + Q I TG GP++NL A HLADP      A+  
Sbjct: 234 GAWFQHIYTGTGPIDNLFAAHLADPHATIFAAFTP 268

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269

 Score = 42.8 bits (99), Expect = 3e-06
 Identities = 21/76 (27%), Positives = 28/76 (36%)

Query: 21  LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 80
           L     FDPLGL  DPE+       E+ + R AM    G F+   +T  G L   + + A
Sbjct: 81  LPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTA 140

Query: 81  DPVNNNAWAYATNFVP 96
                         V 
Sbjct: 141 GEQEYFTDTTTLFIVE 156

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251

 Score = 82.0 bits (201), Expect = 1e-20
 Identities = 36/89 (40%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
            G+V    I         +  YPGG F+PL  A   E     K KEI NGRL M +  GF
Sbjct: 163 PGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLE----AKEKEIANGRL-MLAFLGF 217

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWA 89
            +Q  VTGKGP +NL  H++DP +N    
Sbjct: 218 IIQHNVTGKGPFDNLLQHISDPWHNTIVQ 246

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251

 Score = 46.2 bits (108), Expect = 2e-07
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPG-GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 59
           + A +G  + G           PG   FDPLGLA+DPE        E+ NGR AM  + G
Sbjct: 49  VEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 108

Query: 60  FFVQAIVTGKGPLENLADHLADPVNNNA 87
             +  + T  G +     + A      A
Sbjct: 109 MLLPEVFTSIGIINVPKWYAAGKEEYFA 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	99.96
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	99.94
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	99.9
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	99.88
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	99.88
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	99.88
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	99.8
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	99.74
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	99.72
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	99.69
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	99.66
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	99.59

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=99.96  E-value=1.2e-29  Score=190.28  Aligned_cols=98  Identities=97%  Similarity=1.563  Sum_probs=91.0

Q ss_pred             CceeeeeeccCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHhhc
Q 034317            1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA   80 (98)
Q Consensus         1 ~g~~E~~r~~~~~~~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~~~   80 (98)
                      ||++|.+|+.+.+..+..+..+|||+|||++|.+|+++++++|.+|||||||||+|++|+++|+.+||+++++++.+|++
T Consensus       135 ~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~a  214 (232)
T 2bhw_A          135 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA  214 (232)
T ss_dssp             HHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHH
T ss_pred             HHHHHHHhhccCcccccccccCCCcccccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence            58899999987554454567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccccCCCC
Q 034317           81 DPVNNNAWAYATNFVPGK   98 (98)
Q Consensus        81 ~P~~~~~~~~~~~~~p~~   98 (98)
                      ||+++|.++++++++||+
T Consensus       215 dP~~~n~~~~~~~~~~~~  232 (232)
T 2bhw_A          215 DPVNNNAWSYATNFVPGK  232 (232)
T ss_dssp             CTTTSSGGGGTTTTCSCC
T ss_pred             ChHHhHHHHHHHhhcCCC
Confidence            999999999999999985

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=99.94  E-value=1.4e-27  Score=180.32  Aligned_cols=87  Identities=51%  Similarity=0.780  Sum_probs=79.5

Q ss_pred             CceeeeeeccCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHhhc
Q 034317            1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA   80 (98)
Q Consensus         1 ~g~~E~~r~~~~~~~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~~~   80 (98)
                      ||++|.+|+++...   .+..+|||+|||+||++|+++++++|.+|||||||||+|++|+++|+++||++|++|+.+|++
T Consensus       155 mG~~E~~R~~~~~~---~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~Hla  231 (243)
T 3pl9_A          155 IGYIEFQRNAELDT---EKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLS  231 (243)
T ss_dssp             HHHHHHHHHSCCCT---TTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCC---ccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence            68999999986321   234699999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccc
Q 034317           81 DPVNNNAWAY   90 (98)
Q Consensus        81 ~P~~~~~~~~   90 (98)
                      ||+++|.+++
T Consensus       232 dP~~~ni~~~  241 (243)
T 3pl9_A          232 DPLHTTILDR  241 (243)
T ss_dssp             CSGGGSTTTT
T ss_pred             Ccchhhhhhh
Confidence            9999998875

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=99.90  E-value=7e-26  Score=173.55  Aligned_cols=91  Identities=51%  Similarity=0.921  Sum_probs=59.3

Q ss_pred             CceeeeeeccCC----CC------------CCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 034317            1 MGAVEGYRIAGG----PL------------GEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ   63 (98)
Q Consensus         1 ~g~~E~~r~~~~----~~------------~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~   63 (98)
                      ||++|.+||++.    ..            ....+..+|||+ |||++|++++++++++|++|||||||||+|++|+++|
T Consensus       166 iG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~  245 (276)
T 2wsc_3          166 MGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQ  245 (276)
T ss_dssp             THHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHhhhcccccCCcccccccccccccccccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence            789999998752    10            112355799998 9999999877779999999999999999999999999


Q ss_pred             HHhcCCCchhhhHHhhcCCCCCCccccc
Q 034317           64 AIVTGKGPLENLADHLADPVNNNAWAYA   91 (98)
Q Consensus        64 e~vtg~gpl~~l~~~~~~P~~~~~~~~~   91 (98)
                      +.+||++|++|+.+|++||+++|.+++.
T Consensus       246 ~~~tg~g~~~~l~~HladP~~~n~~~~~  273 (276)
T 2wsc_3          246 ALVTGVGPYQNLLDHLTDPVHNNILTSL  273 (276)
T ss_dssp             CCCCSSCCSCC-----------------
T ss_pred             HHhcCCChHHHHHHhccCcccchhhhhc
Confidence            9999999999999999999999998864

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=99.88  E-value=1.5e-25  Score=168.95  Aligned_cols=88  Identities=52%  Similarity=0.825  Sum_probs=72.9

Q ss_pred             CceeeeeeccCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HhcCCCchhhhHHhh
Q 034317            1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENLADHL   79 (98)
Q Consensus         1 ~g~~E~~r~~~~~~~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e-~vtg~gpl~~l~~~~   79 (98)
                      ||++|.+|+.+.   ...+..||||+|||+|+++|+++++++|.+|||||||||+|++|+++|+ .+||++|++++.+|+
T Consensus       149 ig~~E~~r~~~~---~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~  225 (241)
T 2wsc_1          149 IAFVEHQRSMEK---DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL  225 (241)
T ss_dssp             THHHHHHHTSCC---SSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSC
T ss_pred             HHHHHHHHHhcc---CCCCCCCCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHh
Confidence            688999988643   2235679999999999998888899999999999999999999999999 589999999999999


Q ss_pred             cCCCCCCccccc
Q 034317           80 ADPVNNNAWAYA   91 (98)
Q Consensus        80 ~~P~~~~~~~~~   91 (98)
                      +||+++|.++..
T Consensus       226 adP~~~n~~~~~  237 (241)
T 2wsc_1          226 ADPWHNNIGDIV  237 (241)
T ss_dssp             CCSCC-------
T ss_pred             cCccccceeeee
Confidence            999999998754

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=99.88  E-value=4e-25  Score=167.39  Aligned_cols=87  Identities=41%  Similarity=0.615  Sum_probs=71.6

Q ss_pred             CceeeeeeccCC----CCC----------CCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 034317            1 MGAVEGYRIAGG----PLG----------EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV   66 (98)
Q Consensus         1 ~g~~E~~r~~~~----~~~----------~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~v   66 (98)
                      ||++|.+||++.    ..+          +..+..||||+|||+++.+    ++++|.+||||||| |+|++|+++|+.+
T Consensus       149 iG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~v  223 (251)
T 2wsc_4          149 SHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNV  223 (251)
T ss_dssp             HHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCTTCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTT
T ss_pred             HHHHHHHHhhcccCCCcccccccccccccccccccCCCCccCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHh
Confidence            688999998752    110          0112368999999999976    56789999999999 9999999999999


Q ss_pred             cCCCchhhhHHhhcCCCCCCcccccc
Q 034317           67 TGKGPLENLADHLADPVNNNAWAYAT   92 (98)
Q Consensus        67 tg~gpl~~l~~~~~~P~~~~~~~~~~   92 (98)
                      ||++|++|+.+|++||+++|.+++++
T Consensus       224 TG~gPl~nL~~hladP~~~n~~~~~~  249 (251)
T 2wsc_4          224 TGKGPFDNLLQHISDPWHNTIVQTLG  249 (251)
T ss_dssp             SCCCCCCCTTTTTTCCCCCCSCC---
T ss_pred             cCccHHHHHHHHccChhhhhhhhhhc
Confidence            99999999999999999999998754

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=99.88  E-value=2.3e-25  Score=170.18  Aligned_cols=90  Identities=49%  Similarity=0.753  Sum_probs=77.6

Q ss_pred             CceeeeeeccCCCC----------C----CCCCCCCCCcC-ccCCCCCC-CHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 034317            1 MGAVEGYRIAGGPL----------G----EVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQA   64 (98)
Q Consensus         1 ~g~~E~~r~~~~~~----------~----~~~~~~~PGd~-fDPlgl~~-~~~~~~~~r~~ElknGRlAMla~~g~~~~e   64 (98)
                      ||++|.+||++...          .    ...+..+|||+ |||+||.+ ++++++++|.+|||||||||+|++|+++|+
T Consensus       160 iG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~  239 (269)
T 2wsc_2          160 IGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH  239 (269)
T ss_dssp             HHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHH
T ss_pred             HHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence            68999999976311          0    12355799999 99999984 778889999999999999999999999999


Q ss_pred             HhcCCCchhhhH-HhhcCCCCCCccccc
Q 034317           65 IVTGKGPLENLA-DHLADPVNNNAWAYA   91 (98)
Q Consensus        65 ~vtg~gpl~~l~-~~~~~P~~~~~~~~~   91 (98)
                      .+||++|++++. +|++|| ++|.+++.
T Consensus       240 ~~tg~g~l~~l~~~HladP-~~n~~~~~  266 (269)
T 2wsc_2          240 IYTGTGPIDNLFAAHLADP-HATIFAAF  266 (269)
T ss_dssp             HHTTTCSSCCCSCCCCCCS-CCCCCSSS
T ss_pred             HhcCCChHHHHHHHHhcCc-ccchhhhc
Confidence            999999999999 999999 99998754

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=99.80  E-value=6.8e-20  Score=137.25  Aligned_cols=58  Identities=26%  Similarity=0.482  Sum_probs=53.7

Q ss_pred             CCCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCC
Q 034317           13 PLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG   70 (98)
Q Consensus        13 ~~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~g   70 (98)
                      ..++++++++|||+ |||+||++|+++++++|++||||||+||||++|++++|+++..+
T Consensus        31 ~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G   89 (232)
T 2bhw_A           31 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG   89 (232)
T ss_dssp             SCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence            45788999999999 99999999999999999999999999999999999999976533

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=99.74  E-value=4.9e-19  Score=133.60  Aligned_cols=57  Identities=30%  Similarity=0.436  Sum_probs=28.9

Q ss_pred             CCCCCCCCCCCCcC-ccCCCCCCCHHH-------------------------------------------HHHHHHHHHh
Q 034317           13 PLGEVTDPLYPGGS-FDPLGLADDPEA-------------------------------------------FAELKVKEIK   48 (98)
Q Consensus        13 ~~~~~~~~~~PGd~-fDPlgl~~~~~~-------------------------------------------~~~~r~~Elk   48 (98)
                      ..++++||++|||| |||+||++++|.                                           ++|+|++||+
T Consensus        19 ~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELk   98 (243)
T 3pl9_A           19 KAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELI   98 (243)
T ss_dssp             ---------------------------------------------------------------------CCHHHHHHHHH
T ss_pred             CCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHHHHHhhhh
Confidence            36889999999999 999999998862                                           7899999999


Q ss_pred             cchhHHHHHHHHHHHHHhcCC
Q 034317           49 NGRLAMFSMFGFFVQAIVTGK   69 (98)
Q Consensus        49 nGRlAMla~~g~~~~e~vtg~   69 (98)
                      |||+||||++|++++|++++.
T Consensus        99 HGRwAMLAvlG~lvpE~l~g~  119 (243)
T 3pl9_A           99 HGRWAMLATLGALTVEGLTGI  119 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSC
T ss_pred             cchhHHHHHHHHHhHHhhcCc
Confidence            999999999999999998753

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=99.72  E-value=3.5e-19  Score=136.05  Aligned_cols=59  Identities=36%  Similarity=0.513  Sum_probs=36.1

Q ss_pred             CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCch
Q 034317           14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL   72 (98)
Q Consensus        14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl   72 (98)
                      .++++++++|||+ |||+||++|+++++++|++|||||||||||++|++++|++++.+.+
T Consensus        73 ~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~  132 (269)
T 2wsc_2           73 PPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL  132 (269)
T ss_dssp             ---------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred             CcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence            5778999999999 9999999999999999999999999999999999999998876544

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=99.69  E-value=4.9e-19  Score=134.04  Aligned_cols=59  Identities=36%  Similarity=0.593  Sum_probs=39.0

Q ss_pred             CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCch
Q 034317           14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL   72 (98)
Q Consensus        14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl   72 (98)
                      .++++++++|||+ |||+||++|+++++++|++||+||||||+|++|++++|++++.+++
T Consensus        62 ~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~  121 (251)
T 2wsc_4           62 SPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII  121 (251)
T ss_dssp             -------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred             CccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence            5778999999999 9999999999999999999999999999999999999999988765

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=99.66  E-value=4e-18  Score=128.45  Aligned_cols=56  Identities=32%  Similarity=0.482  Sum_probs=45.9

Q ss_pred             CCCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcC
Q 034317           13 PLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG   68 (98)
Q Consensus        13 ~~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg   68 (98)
                      ..++++++..|||+ |||+||++|+++++++|++|||||||||+|++|++++|+++.
T Consensus        53 ~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~  109 (241)
T 2wsc_1           53 PRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY  109 (241)
T ss_dssp             --------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred             CCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence            35788999999999 999999999999999999999999999999999999998654

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=99.59  E-value=1.1e-17  Score=128.03  Aligned_cols=58  Identities=40%  Similarity=0.544  Sum_probs=35.2

Q ss_pred             CCCCCCCCCCCcC-ccCCCCCCCHHHH------HHHHHHHHhcchhHHHHHHHHHHHHHhcCCCch
Q 034317           14 LGEVTDPLYPGGS-FDPLGLADDPEAF------AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL   72 (98)
Q Consensus        14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~------~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl   72 (98)
                      .++++++++|||+ |||+|| +|++++      +++|++||+||||||+|++|++++|++++.+.+
T Consensus        65 ~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~  129 (276)
T 2wsc_3           65 SLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI  129 (276)
T ss_dssp             ---------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred             CcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence            5788999999999 999999 677778      999999999999999999999999999877644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d1rwta_	218	f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi	9e-43
d1rwta_	218	f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi	3e-09

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  136 bits (344), Expect = 9e-43
 Identities = 94/97 (96%), Positives = 95/97 (97%)

Query: 1   MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
           MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 122 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 181

Query: 61  FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 97
           FVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPG
Sbjct: 182 FVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPG 218

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 49.7 bits (118), Expect = 3e-09
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 27 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 79
          +D  GL+ DPE FA+ +  E+ + R AM    G     ++   G     A   
Sbjct: 33 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWF 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	99.96
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	99.83

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.96  E-value=1.2e-29  Score=185.80  Aligned_cols=96  Identities=97%  Similarity=1.559  Sum_probs=85.9

Q ss_pred             ceeeeeeccCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHhhcC
Q 034317            2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD   81 (98)
Q Consensus         2 g~~E~~r~~~~~~~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~~~~   81 (98)
                      +.+|.+|..+.......+..+|++.|||+++.+++++++++|++|||||||||||++|+++|+++||++|++||.+|+++
T Consensus       123 ~~~e~~~~~~~~~~~~~~~~~~~g~fdPlg~~~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~  202 (218)
T d1rwta_         123 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD  202 (218)
T ss_dssp             HHHHHHHHHCBTTBCCSSSSCCCGGGCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHC
T ss_pred             hhhhhhcccCCCcccccCCCCCCCCccccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcC
Confidence            34566666655555556677887789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccccCCC
Q 034317           82 PVNNNAWAYATNFVPG   97 (98)
Q Consensus        82 P~~~~~~~~~~~~~p~   97 (98)
                      |+++|.++++|+++||
T Consensus       203 P~~~n~~~~~~~~~~~  218 (218)
T d1rwta_         203 PVNNNAWNFATNFVPG  218 (218)
T ss_dssp             TTTSSGGGGTTSSCCC
T ss_pred             chhhhHHHHHhccCCC
Confidence            9999999999999998

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.83  E-value=3e-21  Score=140.74  Aligned_cols=57  Identities=28%  Similarity=0.493  Sum_probs=53.2

Q ss_pred             CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCC
Q 034317           14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG   70 (98)
Q Consensus        14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~g   70 (98)
                      .++++|+++|||+ ||||||++|+++++++|++||||||+||||++|++++|+++...
T Consensus        19 ~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~   76 (218)
T d1rwta_          19 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG   76 (218)
T ss_dssp             CCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCC
Confidence            4889999999999 99999999999999999999999999999999999999976543