Citrus Sinensis ID: 034583

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MDTQKAQQEKEPAPAAAMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSKISERNVDAKGVESALPLQTTVSD
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHcHHcccccccccccccccc
Coil and Loop (DISEMBL)
mdtqkaqqekepapaaamtscrkkknddasFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSKisernvdakgvesalplqttvsd
Flexible Loop (DISEMBL)
mdtqkaqqekepapaaamtscrkKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSKIsernvdakgvesalplqttvsd
Low Complexity Region (SEG)
MDTqkaqqekepapaaaMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSKISERNVDAKGVESALPLQTTVSD
Disordered region (IsUnstruct)
*******************************LEDLRDHIDEFIHASMDAHKACFKKTVQKMFA***************************
Disordered Region (DISOPRED)
*****************************SFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAG*******************LQ*****
Disordered Region (DISEMBL)
***************************DASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSKISERNVDAKGVESALPLQTTVSD
Disordered Region (DISPRO)
***************************DASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSKISE********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTQKAQQEKEPAPAAAMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSKISERNVDAKGVESALPLQTTVSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
224080353	93	predicted protein [Populus trichocarpa]	0.977	0.946	0.698	8e-27
297741465	210	unnamed protein product [Vitis vinifera]	0.988	0.423	0.627	1e-26
359475336	93	PREDICTED: uncharacterized protein LOC10	0.988	0.956	0.627	2e-26
224066553	88	predicted protein [Populus trichocarpa]	0.966	0.988	0.692	3e-26
388492670	91	unknown [Lotus japonicus]	0.988	0.978	0.673	4e-26
147767320	93	hypothetical protein VITISV_033595 [Viti	0.988	0.956	0.617	1e-25
356500303	87	PREDICTED: uncharacterized protein LOC10	0.944	0.977	0.684	1e-24
351727048	94	uncharacterized protein LOC100527051 [Gl	0.988	0.946	0.663	2e-24
388515923	91	unknown [Lotus japonicus]	0.988	0.978	0.630	5e-24
297797906	89	hypothetical protein ARALYDRAFT_490696 [	0.966	0.977	0.652	6e-24

>gi|224080353|ref|XP_002306109.1| predicted protein [Populus trichocarpa] gi|118482343|gb|ABK93095.1| unknown [Populus trichocarpa] gi|222849073|gb|EEE86620.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 79/93 (84%), Gaps = 5/93 (5%)

Query: 1  MDTQKAQQEKEPAPAA---AMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKT 57
          M+TQK+Q  K+ +PAA   A+TSCR+KK DDA+FLEDL+DHIDEFIHASMD HK CF KT
Sbjct: 1  METQKSQPAKQQSPAALDPAITSCRRKKKDDATFLEDLKDHIDEFIHASMDEHKDCFTKT 60

Query: 58 VQKMFAGMSKI-SERNVDAKGVESALPLQTTVS 89
          ++KMF GMSKI +ER+ DAK VES+LPLQTTV+
Sbjct: 61 IKKMF-GMSKIVAERSGDAKEVESSLPLQTTVA 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741465|emb|CBI32596.3| unnamed protein product [Vitis vinifera]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 78/94 (82%), Gaps = 5/94 (5%)

Query: 1   MDTQKAQQEKEPAPAA---AMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKT 57
           M+ Q  Q E +PA AA    +TSCRKKK+DDA+FL+D++DHIDEFIHASMD HK CF KT
Sbjct: 118 MEAQNNQHETQPASAAKAPVVTSCRKKKSDDATFLQDVKDHIDEFIHASMDEHKTCFTKT 177

Query: 58  VQKMFAGMSK-ISERNVDAKGVESALPLQTTVSD 90
           ++KMF GMSK ++ERN +++GVES+LPLQTT+++
Sbjct: 178 IKKMF-GMSKVVAERNSNSEGVESSLPLQTTIAN 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475336|ref|XP_003631661.1| PREDICTED: uncharacterized protein LOC100853783 isoform 1 [Vitis vinifera] gi|359475338|ref|XP_003631662.1| PREDICTED: uncharacterized protein LOC100853783 isoform 2 [Vitis vinifera]

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 78/94 (82%), Gaps = 5/94 (5%)

Query: 1  MDTQKAQQEKEPAPAA---AMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKT 57
          M+ Q  Q E +PA AA    +TSCRKKK+DDA+FL+D++DHIDEFIHASMD HK CF KT
Sbjct: 1  MEAQNNQHETQPASAAKAPVVTSCRKKKSDDATFLQDVKDHIDEFIHASMDEHKTCFTKT 60

Query: 58 VQKMFAGMSK-ISERNVDAKGVESALPLQTTVSD 90
          ++KMF GMSK ++ERN +++GVES+LPLQTT+++
Sbjct: 61 IKKMF-GMSKVVAERNSNSEGVESSLPLQTTIAN 93

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066553|ref|XP_002302133.1| predicted protein [Populus trichocarpa] gi|222843859|gb|EEE81406.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 78/91 (85%), Gaps = 4/91 (4%)

Query: 1  MDTQKAQQEKEPAPAAAMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQK 60
          M+TQK Q EK+ +PA  +TSCR+KK DDA+FL D++DHIDEFIHASMD HK CFKKT++K
Sbjct: 1  METQKTQPEKQQSPA--VTSCRRKKKDDATFLVDVKDHIDEFIHASMDEHKDCFKKTIKK 58

Query: 61 MFAGMSKI-SERNVDAKGVESALPLQTTVSD 90
          MF GMSKI +ER+ DAK VESALPL+TTV++
Sbjct: 59 MF-GMSKIVAERSADAKEVESALPLRTTVAE 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492670|gb|AFK34401.1| unknown [Lotus japonicus]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 75/92 (81%), Gaps = 3/92 (3%)

Query: 1  MDTQKAQQEKEPAPAAAMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQK 60
          M TQ +Q EK+ +P A + SCRKKK++DA+FLED++DHIDEFIHASMD HK CFKKT+QK
Sbjct: 1  MSTQTSQPEKQSSPVATVASCRKKKSEDATFLEDVKDHIDEFIHASMDEHKTCFKKTIQK 60

Query: 61 MFAGMSKI-SERNVDA-KGVESALPLQTTVSD 90
          MF G+SK  SE N +A K VES+LPLQTTV D
Sbjct: 61 MF-GLSKAGSETNSNAVKEVESSLPLQTTVQD 91

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767320|emb|CAN68998.1| hypothetical protein VITISV_033595 [Vitis vinifera]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/94 (61%), Positives = 77/94 (81%), Gaps = 5/94 (5%)

Query: 1  MDTQKAQQEKEPAPAA---AMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKT 57
          M+ Q  Q E +PA AA    +TSCRKKK+DDA+ L+D++DHIDEFIHASMD HK CF KT
Sbjct: 1  MEAQNNQHETQPASAAKAPVVTSCRKKKSDDATILQDVKDHIDEFIHASMDEHKTCFTKT 60

Query: 58 VQKMFAGMSK-ISERNVDAKGVESALPLQTTVSD 90
          ++KMF GMSK ++ERN +++GVES+LPLQTT+++
Sbjct: 61 IKKMF-GMSKVVAERNSNSEGVESSLPLQTTIAN 93

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500303|ref|XP_003518972.1| PREDICTED: uncharacterized protein LOC100527260 [Glycine max] gi|255631898|gb|ACU16316.1| unknown [Glycine max]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 76/92 (82%), Gaps = 7/92 (7%)

Query: 1  MDTQKAQQEKEPAPAAAMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQK 60
          MDTQK       + AAA+TSCRKKKN++A+FLEDL+DHIDEFI+ASMD HK CFKKTVQK
Sbjct: 1  MDTQKGPS----SSAAAVTSCRKKKNEEATFLEDLKDHIDEFINASMDEHKTCFKKTVQK 56

Query: 61 MFAGMSK-ISERNVD-AKGVESALPLQTTVSD 90
          MF GMSK ++ER+ + AK VES+LPLQTT+ D
Sbjct: 57 MF-GMSKAVAERDTNAAKEVESSLPLQTTLQD 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727048|ref|NP_001237915.1| uncharacterized protein LOC100527051 [Glycine max] gi|255631448|gb|ACU16091.1| unknown [Glycine max]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 78/95 (82%), Gaps = 6/95 (6%)

Query: 1  MDTQKAQQEKEP---APAAAMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKT 57
          MDTQK+Q EK+    A A ++TSCRKKKN++A+FL+DL+DHIDEFI+ASMD HK CFKKT
Sbjct: 1  MDTQKSQPEKQSSSTATAPSVTSCRKKKNEEAAFLDDLKDHIDEFINASMDEHKTCFKKT 60

Query: 58 VQKMFAGMSK-ISERNVDA-KGVESALPLQTTVSD 90
          +QKMF GMSK ++E   +A K VES+LPLQTTV D
Sbjct: 61 IQKMF-GMSKAVAEGQSNASKEVESSLPLQTTVQD 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515923|gb|AFK46023.1| unknown [Lotus japonicus]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 75/92 (81%), Gaps = 3/92 (3%)

Query: 1  MDTQKAQQEKEPAPAAAMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQK 60
          M TQ +Q EK  +  A + SCRKKK+++A+FLED++DHIDEFI+ASMD HK CFKKT+QK
Sbjct: 1  MSTQTSQPEKLSSSVATVASCRKKKSEEATFLEDVKDHIDEFINASMDEHKTCFKKTIQK 60

Query: 61 MFAGMSK-ISERNVDA-KGVESALPLQTTVSD 90
          MF G+SK ++E+N +A K VES+LPLQTTV D
Sbjct: 61 MF-GLSKAVAEKNSNAVKEVESSLPLQTTVQD 91

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797906|ref|XP_002866837.1| hypothetical protein ARALYDRAFT_490696 [Arabidopsis lyrata subsp. lyrata] gi|297312673|gb|EFH43096.1| hypothetical protein ARALYDRAFT_490696 [Arabidopsis lyrata subsp. lyrata]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 74/92 (80%), Gaps = 5/92 (5%)

Query: 1  MDTQKAQQEKEPAPAAAMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQK 60
          M+TQK Q E  P PA  MTSCRKK  DDA+F ED++DHID+FIHASMD HK CF+KT++K
Sbjct: 1  METQKNQAEIPPKPA--MTSCRKKVKDDATFFEDVKDHIDDFIHASMDEHKTCFQKTIKK 58

Query: 61 MFAGMSK-ISERNV-DAKGVESALPLQTTVSD 90
          MF G+SK ++E+   +AKGVES LPLQTTVS+
Sbjct: 59 MF-GLSKAVAEKQAEEAKGVESQLPLQTTVSE 89

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
TAIR|locus:505006569	86	AT4G39235 "AT4G39235" [Arabido	0.8	0.837	0.693	2.3e-23
TAIR|locus:2078097	90	AT3G05570 "AT3G05570" [Arabido	0.788	0.788	0.653	4.4e-20
TAIR|locus:2049384	104	AT2G21640 "AT2G21640" [Arabido	0.788	0.682	0.526	6e-16

TAIR|locus:505006569 AT4G39235 "AT4G39235" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 52/75 (69%), Positives = 66/75 (88%)

Query:    18 MTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSK-ISERN-VDA 75
             MTSCRKK  DDA+F ED++DHID+FIHASMD HK+CF+KT++KMF G+SK ++E+  V+A
Sbjct:    13 MTSCRKKVKDDATFFEDVKDHIDDFIHASMDEHKSCFQKTIKKMF-GLSKAVAEKQAVEA 71

Query:    76 KGVESALPLQTTVSD 90
             KGVES LPLQTTVS+
Sbjct:    72 KGVESQLPLQTTVSE 86

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2078097 AT3G05570 "AT3G05570" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 49/75 (65%), Positives = 61/75 (81%)

Query:    19 TSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSKI--SERNVDAK 76
             +SCRKK  DDA+FLED++DHID+FI+ASMD HK CF KT++KMF G+SK    ++  +AK
Sbjct:    17 SSCRKKTKDDANFLEDVKDHIDDFINASMDDHKNCFNKTIKKMF-GLSKAVADKQQSEAK 75

Query:    77 G-VESALPLQTTVSD 90
             G VES LPLQTTVSD
Sbjct:    76 GGVESYLPLQTTVSD 90

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049384 AT2G21640 "AT2G21640" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 40/76 (52%), Positives = 56/76 (73%)

Query:    19 TSCRKK-KNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSK---ISERNVD 74
             +SCRK+ K+D+A+F  +L+DH+DEFIHASMD HK CFK T+ K+F   SK   ++E+ ++
Sbjct:    28 SSCRKRVKDDNATFFANLKDHMDEFIHASMDEHKTCFKNTMDKIFGSFSKAEAVAEKQIE 87

Query:    75 AKGV-ESALPLQTTVS 89
             AK V E   PLQT V+
Sbjct:    88 AKEVVEIHSPLQTAVT 103


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.127   0.355    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       90        76   0.00091  102 3  11 22  0.36    29
                                                     29  0.48    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  461 (49 KB)
  Total size of DFA:  84 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.81u 0.16s 8.97t   Elapsed:  00:00:00
  Total cpu time:  8.81u 0.16s 8.97t   Elapsed:  00:00:00
  Start:  Thu May  9 20:22:21 2013   End:  Thu May  9 20:22:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00