Citrus Sinensis ID: 034649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MAGNRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHFLRKYVRNKTPEIMPKINSFFTDPQ
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHEEEEEEcccccccEEEcHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHcHHHHHHHHHHHHHHHHHHHHHHHccccccEEcHHHHHccccccHHHHHHHHHHHHHHHHHcccccHcHHHHHHccccc
Coil and Loop (DISEMBL)
magnrwirpevfPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLenyaegekySEHFLRKYVrnktpeimpkinsfftdpq
Flexible Loop (DISEMBL)
magnrwirpeVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLenyaegekyseHFLRKYvrnktpeimpkinsfftdpq
Low Complexity Region (SEG)
MAGNRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHFLRKYVRNKTPEIMPKINSFFTDPQ
Disordered region (IsUnstruct)
****RWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHFLRKYVRNKT***************
Disordered Region (DISOPRED)
***NRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHFLRKYVRNKTPEIMPKINSFF****
Disordered Region (DISEMBL)
MAGNRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHFLRKYVRNKTPEIMPKINSFFTDPQ
Disordered Region (DISPRO)
****RWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHFLRKYVRNKTPEIMPKINSFFTD**
Transmembrane Helix (TMHMM)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGNRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHFLRKYVRNKTPEIMPKINSFFTDPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
99646724	91	B12D-like protein [Beta vulgaris]	0.943	0.912	0.879	5e-38
225457158	93	PREDICTED: uncharacterized protein LOC10	0.965	0.913	0.835	6e-38
449469495	94	PREDICTED: uncharacterized protein LOC10	0.965	0.904	0.847	1e-37
297733849	88	unnamed protein product [Vitis vinifera]	0.965	0.965	0.835	1e-37
255540809	88	conserved hypothetical protein [Ricinus	0.988	0.988	0.862	1e-37
224119204	90	predicted protein [Populus trichocarpa]	1.0	0.977	0.806	5e-37
224100067	92	predicted protein [Populus trichocarpa]	1.0	0.956	0.806	1e-36
356567336	89	PREDICTED: uncharacterized protein LOC10	0.988	0.977	0.804	1e-36
440808091	93	unknown [Rehmannia glutinosa]	0.954	0.903	0.821	1e-36
255630085	89	unknown [Glycine max]	0.988	0.977	0.793	2e-36

>gi|99646724|emb|CAK22419.1| B12D-like protein [Beta vulgaris]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 81/83 (97%)

Query: 4  NRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEH 63
          NRW+RPEV+PLFAAVGVAVGICG+QLVRNICINPEVRV+K+NRAAGVLEN++EGEKY+EH
Sbjct: 5  NRWVRPEVYPLFAAVGVAVGICGVQLVRNICINPEVRVSKENRAAGVLENFSEGEKYAEH 64

Query: 64 FLRKYVRNKTPEIMPKINSFFTD 86
          FLRKYVRNKTPEIMP INSFF D
Sbjct: 65 FLRKYVRNKTPEIMPSINSFFAD 87

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457158|ref|XP_002283743.1| PREDICTED: uncharacterized protein LOC100263922 [Vitis vinifera]

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 71/85 (83%), Positives = 82/85 (96%)

Query: 4  NRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEH 63
          NRW+RPEV+PLFAA+GVAVGICG QLVRNICINP+VRV+K+NRAAGVLEN+ EG+KYSEH
Sbjct: 7  NRWLRPEVYPLFAAMGVAVGICGFQLVRNICINPDVRVSKENRAAGVLENFTEGQKYSEH 66

Query: 64 FLRKYVRNKTPEIMPKINSFFTDPQ 88
          FLRKYVRNK+PEIMP INSFF+DP+
Sbjct: 67 FLRKYVRNKSPEIMPSINSFFSDPE 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469495|ref|XP_004152455.1| PREDICTED: uncharacterized protein LOC101218501 [Cucumis sativus] gi|449487788|ref|XP_004157801.1| PREDICTED: uncharacterized LOC101218501 [Cucumis sativus]

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/85 (84%), Positives = 82/85 (96%)

Query: 4  NRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEH 63
          +RW+RPEV+PLFAAVGVAVGICG QL+RNICINPEVRVTK+NRAAGVL+N+AEGEKYSEH
Sbjct: 8  SRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAEGEKYSEH 67

Query: 64 FLRKYVRNKTPEIMPKINSFFTDPQ 88
          FLRK+VRNK+PEIMP IN+FFTDP 
Sbjct: 68 FLRKFVRNKSPEIMPSINNFFTDPN 92

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733849|emb|CBI15096.3| unnamed protein product [Vitis vinifera]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/85 (83%), Positives = 82/85 (96%)

Query: 4  NRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEH 63
          NRW+RPEV+PLFAA+GVAVGICG QLVRNICINP+VRV+K+NRAAGVLEN+ EG+KYSEH
Sbjct: 2  NRWLRPEVYPLFAAMGVAVGICGFQLVRNICINPDVRVSKENRAAGVLENFTEGQKYSEH 61

Query: 64 FLRKYVRNKTPEIMPKINSFFTDPQ 88
          FLRKYVRNK+PEIMP INSFF+DP+
Sbjct: 62 FLRKYVRNKSPEIMPSINSFFSDPE 86

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540809|ref|XP_002511469.1| conserved hypothetical protein [Ricinus communis] gi|223550584|gb|EEF52071.1| conserved hypothetical protein [Ricinus communis]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/87 (86%), Positives = 81/87 (93%)

Query: 1  MAGNRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKY 60
          MAGNRWIRPEV+PLFAA+GVAVGIC  QLVRNICINPEVRV KQNRAAGVLEN+ EGEKY
Sbjct: 1  MAGNRWIRPEVYPLFAAMGVAVGICSFQLVRNICINPEVRVNKQNRAAGVLENFKEGEKY 60

Query: 61 SEHFLRKYVRNKTPEIMPKINSFFTDP 87
          SE+FLRK+VRNKTPEIMP IN FFT+P
Sbjct: 61 SENFLRKFVRNKTPEIMPSINRFFTEP 87

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119204|ref|XP_002318014.1| predicted protein [Populus trichocarpa] gi|118484665|gb|ABK94203.1| unknown [Populus trichocarpa] gi|222858687|gb|EEE96234.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 71/88 (80%), Positives = 82/88 (93%)

Query: 1  MAGNRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKY 60
          M G+RW+RPEV+PLFAAVGVAVGICG QL RNICINPEVRVTKQNRAAGVL+N++EGEKY
Sbjct: 1  MGGSRWLRPEVYPLFAAVGVAVGICGFQLARNICINPEVRVTKQNRAAGVLDNFSEGEKY 60

Query: 61 SEHFLRKYVRNKTPEIMPKINSFFTDPQ 88
          SEH LRK VRN++P+IMP IN+FFTDP+
Sbjct: 61 SEHGLRKLVRNRSPQIMPSINNFFTDPK 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100067|ref|XP_002311729.1| predicted protein [Populus trichocarpa] gi|222851549|gb|EEE89096.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/88 (80%), Positives = 80/88 (90%)

Query: 1  MAGNRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKY 60
          MA +RWIRPEVFPLFA+VGVAVGIC MQLVRNIC NPEVRVTK+NRAAGVL+N+ EGEKY
Sbjct: 1  MASSRWIRPEVFPLFASVGVAVGICAMQLVRNICTNPEVRVTKENRAAGVLDNFKEGEKY 60

Query: 61 SEHFLRKYVRNKTPEIMPKINSFFTDPQ 88
          +EH LRK+VRNKTP+IMP IN FF+DP 
Sbjct: 61 AEHGLRKFVRNKTPQIMPSINGFFSDPD 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567336|ref|XP_003551877.1| PREDICTED: uncharacterized protein LOC100500344 [Glycine max]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/87 (80%), Positives = 80/87 (91%)

Query: 1  MAGNRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKY 60
          MA NRW++PEV+PLFAAVGVAVGICGMQLVRNI  NPEVRVTKQNRAAG+LEN+AEGEKY
Sbjct: 1  MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFAEGEKY 60

Query: 61 SEHFLRKYVRNKTPEIMPKINSFFTDP 87
          S+H LRKYVR K P+IMP +N+FF+DP
Sbjct: 61 SQHSLRKYVRGKQPQIMPSVNNFFSDP 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|440808091|gb|AGC24177.1| unknown [Rehmannia glutinosa]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/84 (82%), Positives = 81/84 (96%)

Query: 5  RWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHF 64
          RW+RPEV+PLFAAVGVAVGICGMQL+RNI INPEVRVTK+NRAAGVL+++AEGEKY+EH 
Sbjct: 9  RWLRPEVYPLFAAVGVAVGICGMQLIRNITINPEVRVTKENRAAGVLDDFAEGEKYAEHA 68

Query: 65 LRKYVRNKTPEIMPKINSFFTDPQ 88
          LRKYVRN++PEIMP +NSFFTDP+
Sbjct: 69 LRKYVRNRSPEIMPSLNSFFTDPK 92

Source: Rehmannia glutinosa

Species: Rehmannia glutinosa

Genus: Rehmannia

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630085|gb|ACU15396.1| unknown [Glycine max]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 80/87 (91%)

Query: 1  MAGNRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKY 60
          MA NRW++PEV+PLFAAVGVAVGICGMQLVRNI  NPEVRVTKQNRAAG+LEN+AEGEKY
Sbjct: 1  MAANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVTKQNRAAGILENFAEGEKY 60

Query: 61 SEHFLRKYVRNKTPEIMPKINSFFTDP 87
          S+H LRKYVR K P++MP +N+FF+DP
Sbjct: 61 SQHSLRKYVRGKQPQVMPSVNNFFSDP 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:2100484	88	AT3G48140 "AT3G48140" [Arabido	0.954	0.954	0.738	1.6e-31
TAIR|locus:2829357	87	AT3G29970 "AT3G29970" [Arabido	0.920	0.931	0.481	5.7e-20

TAIR|locus:2100484 AT3G48140 "AT3G48140" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 62/84 (73%), Positives = 73/84 (86%)

Query:     4 NRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEH 63
             +RW+RPEV+PLFAA GVAVGIC   L+RNI  NPEVR TK+NRAAG+L+N+AEGEKY E+
Sbjct:     3 SRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKEN 62

Query:    64 FLRKYVRNKTPEIMPKINSFFTDP 87
             FLRK+VRNK PEIMP +N FFTDP
Sbjct:    63 FLRKFVRNKKPEIMPGLNKFFTDP 86

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0010150 "leaf senescence" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

TAIR|locus:2829357 AT3G29970 "AT3G29970" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 39/81 (48%), Positives = 57/81 (70%)

Query:     5 RWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHF 64
             RW+RPEV+PL  A+G    +   QL RN  +NP+ R+ K++R  G+LEN  EGEKY++H 
Sbjct:     3 RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHN 62

Query:    65 LRKYVRNKTPEIMPKINSFFT 85
              RKY+R + P++MP +N FF+
Sbjct:    63 FRKYLRTRQPQVMPSLNRFFS 83


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        88   0.00091  102 3  11 22  0.44    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  113 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.19u 0.12s 10.31t   Elapsed:  00:00:00
  Total cpu time:  10.19u 0.12s 10.31t   Elapsed:  00:00:00
  Start:  Thu May  9 22:24:01 2013   End:  Thu May  9 22:24:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016171001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (93 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	88
pfam06522	73	pfam06522, B12D, NADH-ubiquinone reductase complex	2e-27

>gnl|CDD|203472 pfam06522, B12D, NADH-ubiquinone reductase complex 1 MLRQ subunit

 Score = 94.3 bits (235), Expect = 2e-27
 Identities = 31/78 (39%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 6  WIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHFL 65
            RPE+ PLF AVG AVG     L+R +  NP+VR  K+N       N    EKY+ H  
Sbjct: 1  KKRPELIPLFVAVGAAVGGATFYLLRLLLTNPDVRWDKKN-------NPEPWEKYAPHKQ 53

Query: 66 RKYVRNKTPEIMPKINSF 83
           K+ R   P+  P  N F
Sbjct: 54 YKFYRVN-PDYSPLKNEF 70

The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear and is found in plants, insects, fungi and higher metazoans. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation. Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF06522	73	B12D: NADH-ubiquinone reductase complex 1 MLRQ sub	99.92

>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []

Probab=99.92  E-value=4.3e-26  Score=144.84  Aligned_cols=72  Identities=43%  Similarity=0.617  Sum_probs=68.9

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHhhcCCceeEecCCccccchhhhhhhhhhhhhHHHHHhhcCCCCcCccccccCC
Q 034649            6 WIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHFLRKYVRNKTPEIMPKINSFFT   85 (88)
Q Consensus         6 wi~pel~PL~~~vg~a~~~a~~~~~R~l~~nPdVr~~k~~r~~~v~~n~~eG~~y~~h~~R~~~~~~~p~i~p~ln~~f~   85 (88)
                      |.+|||||||+|||+|+++|+|+++|+|++||||+|+|++|       .+++++|++|..|||++.+. +|||.+|++ +
T Consensus         1 ~~~pel~PL~~~vg~a~~~a~~~~~r~l~~~PdV~~~k~~~-------~~pw~~~~~~~~~K~~~~~~-~~~~~~~~~-p   71 (73)
T PF06522_consen    1 KKHPELYPLFVIVGVAVGGATFYLYRLLLTNPDVRWNKKNR-------PEPWEKYKPHEQRKFYSINQ-DYMPLKNNF-P   71 (73)
T ss_pred             CCCccccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCC-------cChhhhcCccccEEeecccc-ccccccccC-C
Confidence            89999999999999999999999999999999999999999       56799999999999999988 999999998 6


Q ss_pred             C
Q 034649           86 D   86 (88)
Q Consensus        86 ~   86 (88)
                      |
T Consensus        72 d   72 (73)
T PF06522_consen   72 D   72 (73)
T ss_pred             C
Confidence            5

It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00