Citrus Sinensis ID: 034721

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80------
Protein Sequence
MAVAIRGGRGGTAVGPGLRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSPPPLHSFFHLSEMPFINYFYEKLLSIIAN
Secondary Structure (PSIPRED)
ccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEccccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mavairggrggtavgpglRSLFSYRIFVSAMFSLLFLATLSVIltshpstshhdpvsppplhsffhlsempfINYFYEKLLSIIAN
Flexible Loop (DISEMBL)
mavairggrggtavgpgLRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSPPPLHSFFHLSEMPFINYFYEKLLSIIAN
Low Complexity Region (SEG)
MAVAIrggrggtavgpglrSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSPPPLHSFFHLSEMPFINYFYEKLLSIIAN
Disordered region (IsUnstruct)
**********GTAVGPGLRSLFSYRIFVSAMFSLLFLATLSVILT***************LHSFFHLSEMPFINYFYEKLLSII**
Disordered Region (DISOPRED)
**************GPGLRSLFSYRIFVSAMFSLLFLATLSVIL******************SFFHLSEMPFINYFYEKLLSIIAN
Disordered Region (DISEMBL)
*********GGTAVGPGLRSLFSYRIFVSAMFSLLFLATLSVILTSH**********PPPLHSFFHLSEMPFINYFYEKLLSIIAN
Disordered Region (DISPRO)
*AV*****RGGTAVGPGLRSLFSYRIFVSAMFSLLFLATLSVILTSH*******PVSPPPLHSFFHLSEMPFINYFYEKLLSIIAN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVAIRGGRGGTAVGPGLRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSPPPLHSFFHLSEMPFINYFYEKLLSIIAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	86	2.2.26 [Sep-21-2011]
Q9FWA4	561	Probable galacturonosyltr	yes	no	0.488	0.074	0.619	6e-08

>sp|Q9FWA4|GAUT9_ARATH Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 29/42 (69%)

Query: 17 GLRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSP 58
          GLRS FSYRIF+SA+FS LFLAT SV+L S     H D   P
Sbjct: 19 GLRSFFSYRIFISALFSFLFLATFSVVLNSSRHQPHQDHTLP 60

May be involved in pectin synthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
356573772	529	PREDICTED: probable galacturonosyltransf	0.720	0.117	0.606	2e-14
449438749	550	PREDICTED: probable galacturonosyltransf	0.674	0.105	0.627	2e-12
356545523	529	PREDICTED: probable galacturonosyltransf	0.720	0.117	0.560	2e-12
358343636	555	Glycosyltransferase [Medicago truncatula	0.720	0.111	0.545	2e-11
255579934	563	Glycosyltransferase QUASIMODO1, putative	0.476	0.072	0.731	9e-09
90657560	556	hypothetical protein [Cleome spinosa]	0.546	0.084	0.632	8e-08
297828684	561	hypothetical protein ARALYDRAFT_477468 [	0.488	0.074	0.619	2e-06
18396159	561	alpha-1,4-galacturonosyltransferase [Ara	0.488	0.074	0.619	2e-06
298204422	543	unnamed protein product [Vitis vinifera]	0.453	0.071	0.512	0.0001
147794385	543	hypothetical protein VITISV_022574 [Viti	0.453	0.071	0.512	0.0001

>gi|356573772|ref|XP_003555030.1| PREDICTED: probable galacturonosyltransferase 9-like [Glycine max]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 52/66 (78%), Gaps = 4/66 (6%)

Query: 1  MAVAIRGGRGGTAVGPGLRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSPPP 60
          MAVA RG RGG++     RSLFS+RIF+SAMFSLLF+ATLSV+LT++PSTS+ DP  P  
Sbjct: 1  MAVATRGARGGSS----FRSLFSFRIFISAMFSLLFVATLSVLLTTNPSTSNDDPDLPTT 56

Query: 61 LHSFFH 66
           +++ H
Sbjct: 57 GNAYVH 62

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438749|ref|XP_004137150.1| PREDICTED: probable galacturonosyltransferase 9-like [Cucumis sativus] gi|449476425|ref|XP_004154733.1| PREDICTED: probable galacturonosyltransferase 9-like [Cucumis sativus]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 1  MAVAIRGGRGGTAV-GPGLRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSP 58
          MAVA+RG RG +   G   R+ FSYRIF+SA+FSLLF+ATLSVI T++PST HHD   P
Sbjct: 1  MAVAVRGSRGASNFSGFNPRNFFSYRIFISALFSLLFIATLSVIFTTNPSTPHHDSALP 59

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545523|ref|XP_003541190.1| PREDICTED: probable galacturonosyltransferase 9-like [Glycine max]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 4/66 (6%)

Query: 1  MAVAIRGGRGGTAVGPGLRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSPPP 60
          MAVA RG RGG++     RSLFS+RIF+SA+FSLLF+ATLSV+ T++PSTS+ D   P  
Sbjct: 1  MAVATRGARGGSS----FRSLFSFRIFISAIFSLLFVATLSVLFTTNPSTSNDDSDLPTT 56

Query: 61 LHSFFH 66
           +++ H
Sbjct: 57 GNAYVH 62

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343636|ref|XP_003635905.1| Glycosyltransferase [Medicago truncatula] gi|355501840|gb|AES83043.1| Glycosyltransferase [Medicago truncatula]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 47/66 (71%), Gaps = 4/66 (6%)

Query: 1  MAVAIRGGRGGTAVGPGLRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSPPP 60
          MAV+ RG RGG+     LR  FSYRIF+SAMFSLLF+ATLSV+ T++PST + D   P  
Sbjct: 1  MAVSGRGSRGGST----LRGFFSYRIFISAMFSLLFIATLSVLFTTNPSTENDDSDLPTT 56

Query: 61 LHSFFH 66
           +++ H
Sbjct: 57 GNAYVH 62

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579934|ref|XP_002530802.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi|223529623|gb|EEF31570.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/41 (73%), Positives = 34/41 (82%)

Query: 18 LRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSP 58
          LRS FSYRI VSAMF+LLFLATLSV+LT+HP TS H+   P
Sbjct: 22 LRSFFSYRILVSAMFTLLFLATLSVLLTTHPPTSPHESSLP 62

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90657560|gb|ABD96860.1| hypothetical protein [Cleome spinosa]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 34/49 (69%), Gaps = 2/49 (4%)

Query: 18 LRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSPPPLHSFFH 66
          LR LFSYRIFVSAMFSLLFLAT SV+L S  S  H DP  P    ++ H
Sbjct: 17 LRGLFSYRIFVSAMFSLLFLATFSVVLNS--SRQHQDPTLPNTGSAYMH 63

Source: Cleome spinosa

Species: Cleome spinosa

Genus: Cleome

Family: Cleomaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828684|ref|XP_002882224.1| hypothetical protein ARALYDRAFT_477468 [Arabidopsis lyrata subsp. lyrata] gi|297328064|gb|EFH58483.1| hypothetical protein ARALYDRAFT_477468 [Arabidopsis lyrata subsp. lyrata]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 29/42 (69%)

Query: 17 GLRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSP 58
          GLRS FSYRIF+SA+FS LFLAT SV+L S     H D   P
Sbjct: 19 GLRSFFSYRIFISALFSFLFLATFSVVLNSSRHQPHQDHTLP 60

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396159|ref|NP_566170.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|26394254|sp|Q9FWA4.1|GAUT9_ARATH RecName: Full=Probable galacturonosyltransferase 9 gi|10092184|gb|AAG12603.1|AC068900_9 unknown protein; 9779-11709 [Arabidopsis thaliana] gi|19310441|gb|AAL84957.1| AT3g02350/F11A12_103 [Arabidopsis thaliana] gi|21536764|gb|AAM61096.1| glycosyl transferase, putative [Arabidopsis thaliana] gi|28416491|gb|AAO42776.1| At3g02350/F11A12_103 [Arabidopsis thaliana] gi|332640274|gb|AEE73795.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 29/42 (69%)

Query: 17 GLRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSP 58
          GLRS FSYRIF+SA+FS LFLAT SV+L S     H D   P
Sbjct: 19 GLRSFFSYRIFISALFSFLFLATFSVVLNSSRHQPHQDHTLP 60

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204422|emb|CBI16902.3| unnamed protein product [Vitis vinifera]

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 31/39 (79%)

Query: 20 SLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSP 58
          ++ SYRIF SA+F++LF+AT+SV+L ++P+   HD V P
Sbjct: 19 NIVSYRIFASALFTILFIATISVLLNTNPAPPSHDSVIP 57

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794385|emb|CAN73730.1| hypothetical protein VITISV_022574 [Vitis vinifera]

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 31/39 (79%)

Query: 20 SLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSP 58
          ++ SYRIF SA+F++LF+AT+SV+L ++P+   HD V P
Sbjct: 19 NIVSYRIFASALFTILFIATISVLLNTNPAPPSHDSVIP 57

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
TAIR|locus:2074572	561	GAUT9 "galacturonosyltransfera	0.453	0.069	0.589	1.2e-05

TAIR|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 23/39 (58%), Positives = 26/39 (66%)

Query:    20 SLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSP 58
             S FSYRIF+SA+FS LFLAT SV+L S     H D   P
Sbjct:    22 SFFSYRIFISALFSFLFLATFSVVLNSSRHQPHQDHTLP 60


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.138   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       86        72   0.00091  102 3  11 22  0.37    28
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  389 (42 KB)
  Total size of DFA:  75 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.56u 0.20s 10.76t   Elapsed:  00:00:01
  Total cpu time:  10.56u 0.20s 10.76t   Elapsed:  00:00:01
  Start:  Mon May 20 17:47:41 2013   End:  Mon May 20 17:47:42 2013

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.3__169__AT3G02350.1 annotation not avaliable (561 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	86
PLN02523	559	PLN02523, PLN02523, galacturonosyltransferase	5e-15

>gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase

 Score = 67.6 bits (165), Expect = 5e-15
 Identities = 36/58 (62%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 1  MAVAIRGGRGGTAVGPGLRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSP 58
          MAVA RGGRGG   G GLRS FSYRI  SA+F  LFLAT SV+L + P   HHD + P
Sbjct: 1  MAVAHRGGRGGGGPG-GLRSFFSYRILASAIFLFLFLATTSVLLNTSPHPPHHDHLLP 57

Length = 559

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	86
PLN02523	559	galacturonosyltransferase	99.29

>PLN02523 galacturonosyltransferase

Probab=99.29  E-value=3.5e-12  Score=105.43  Aligned_cols=62  Identities=58%  Similarity=0.934  Sum_probs=56.8

Q ss_pred             CeeeeecCCCCcccCcchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCccc
Q 034721            1 MAVAIRGGRGGTAVGPGLRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSPPPLHS   63 (86)
Q Consensus         1 mavairggrggtavgpglrslfsyrifvsamfsllflatlsviltshpstshhdpvsppplhs   63 (86)
                      ||+|-||||||...| |+|+.|+||+|.||+|.+||+|++|+.|++||..+|||-.-|---+.
T Consensus         1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (559)
T PLN02523          1 MAVAHRGGRGGGGPG-GLRSFFSYRILASAIFLFLFLATTSVLLNTSPHPPHHDHLLPSSGNA   62 (559)
T ss_pred             CchhhhcccCCCCCc-ccccchhHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccccccccc
Confidence            899999999999888 99999999999999999999999999999999999999876654443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00