Citrus Sinensis ID: 035021

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MYHHVIIYVMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACVIAA
Secondary Structure (PSIPRED)
cccccEEEEEcccEEEcccEEEEEEEccEEEEcHHHHHccccccEEEEEEccccccccccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcccccccccEEEEEEEHcHHHccHHHHHccHccHHHHHHHccEEccccccccccccccHHHEEEcc
Coil and Loop (DISEMBL)
MYHHVIIYVMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGmrmgvskkEILQTElpsleacviaa
Flexible Loop (DISEMBL)
MYHHVIIYVMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKeilqtelpsleacviaa
Low Complexity Region (SEG)
MYHHVIIYVMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACVIAA
Disordered region (IsUnstruct)
*YHHVIIYVMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACV***
Disordered Region (DISOPRED)
****V*IYVMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMR****************EACVIA*
Disordered Region (DISEMBL)
MYHHVIIYVMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACVIAA
Disordered Region (DISPRO)
MYHHVIIYVMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACVIAA
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYHHVIIYVMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACVIAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
225447822	640	PREDICTED: C2 domain-containing protein	0.894	0.106	0.472	1e-10
147768971	201	hypothetical protein VITISV_035914 [Viti	0.894	0.338	0.445	3e-10
159895677	200	phosphatidylserine decarboxylase 2 [Goss	0.868	0.33	0.472	3e-09
255570988	633	phosphatidylserine decarboxylase, putati	0.815	0.097	0.514	8e-09
449478940	661	PREDICTED: LOW QUALITY PROTEIN: phosphat	0.868	0.099	0.402	4e-08
449438532	640	PREDICTED: phosphatidylserine decarboxyl	0.868	0.103	0.402	4e-08
224058689	361	predicted protein [Populus trichocarpa]	0.789	0.166	0.508	3e-07
302818837	643	hypothetical protein SELMODRAFT_132807 [	0.802	0.094	0.484	2e-06
302820003	640	hypothetical protein SELMODRAFT_186269 [	0.802	0.095	0.484	2e-06
186513660	635	phosphatidylserine decarboxylase 3 [Arab	0.684	0.081	0.508	2e-06

>gi|225447822|ref|XP_002267948.1| PREDICTED: C2 domain-containing protein C31G5.15-like [Vitis vinifera]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/74 (47%), Positives = 51/74 (68%), Gaps = 6/74 (8%)

Query: 8   YVMTASTFSFLNY-----ICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEIL 62
           YV     F + ++     IC++  +D I+ID+DLL+NS ++LETLV+VGM++GVS K+  
Sbjct: 568 YVQKGEEFGYFSFGGSTVICVFE-KDTIEIDEDLLENSTKSLETLVAVGMKLGVSTKKRA 626

Query: 63  QTELPSLEACVIAA 76
             ELP+LE CVI A
Sbjct: 627 GPELPNLEGCVIGA 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768971|emb|CAN62463.1| hypothetical protein VITISV_035914 [Vitis vinifera]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 6/74 (8%)

Query: 8   YVMTASTFSFLNY-----ICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEIL 62
           YV     F + ++     IC++  +D ++ID+DLL+NS ++LETLV+VGM++GVS K+  
Sbjct: 129 YVQKGEEFGYFSFGGSTVICVFE-KDTLEIDEDLLENSTKSLETLVAVGMKLGVSTKKQA 187

Query: 63  QTELPSLEACVIAA 76
             ELP+LE C I A
Sbjct: 188 GPELPNLENCAIGA 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|159895677|gb|ABX10449.1| phosphatidylserine decarboxylase 2 [Gossypium hirsutum]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 6/72 (8%)

Query: 8   YVMTASTFSFLNY-----ICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEIL 62
           +V     F + ++     IC++  + AI ID DLL NS R+LETLVSVGM +GVSKK+  
Sbjct: 128 FVKKGEEFGYFSFGGSTVICVFE-KGAIDIDDDLLANSGRSLETLVSVGMTLGVSKKKPG 186

Query: 63  QTELPSLEACVI 74
              LP+LE CV+
Sbjct: 187 SGGLPNLENCVL 198

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570988|ref|XP_002526445.1| phosphatidylserine decarboxylase, putative [Ricinus communis] gi|223534225|gb|EEF35940.1| phosphatidylserine decarboxylase, putative [Ricinus communis]

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 48/68 (70%), Gaps = 6/68 (8%)

Query: 15  FSF--LNYICLW----VLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPS 68
           FSF     IC++    ++QDAI ID+DLL NSAR+LETLV VGM++GV+ +   + +LP+
Sbjct: 566 FSFGGSTVICVFEKEDLVQDAILIDEDLLANSARSLETLVCVGMKLGVAARRRSEIDLPN 625

Query: 69  LEACVIAA 76
           LE C I A
Sbjct: 626 LENCEIRA 633

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478940|ref|XP_004155459.1| PREDICTED: LOW QUALITY PROTEIN: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis sativus]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 6/72 (8%)

Query: 8   YVMTASTFSFLNY-----ICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEIL 62
           YV     F + ++     IC++  +D+IQ+D+DLL NS+R+LETLV VG ++G+S + + 
Sbjct: 587 YVKKGEEFGYFSFGGSTVICVFE-KDSIQLDEDLLANSSRSLETLVRVGTKLGLSTRNVS 645

Query: 63  QTELPSLEACVI 74
           QT+ P +  C I
Sbjct: 646 QTDFPDVSRCAI 657

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438532|ref|XP_004137042.1| PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis sativus]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 6/72 (8%)

Query: 8   YVMTASTFSFLNY-----ICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEIL 62
           YV     F + ++     IC++  +D+IQ+D+DLL NS+R+LETLV VG ++G+S + + 
Sbjct: 566 YVKKGEEFGYFSFGGSTVICVFE-KDSIQLDEDLLANSSRSLETLVRVGTKLGLSTRNVS 624

Query: 63  QTELPSLEACVI 74
           QT+ P +  C I
Sbjct: 625 QTDFPDVSRCAI 636

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058689|ref|XP_002299604.1| predicted protein [Populus trichocarpa] gi|222846862|gb|EEE84409.1| predicted protein [Populus trichocarpa]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 1/61 (1%)

Query: 15  FSFLNYICLWVLQ-DAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACV 73
           FSF     + V + DAI+ID+DLL NSAR+LETLVSVGM++GV+ K+     LP+ +  V
Sbjct: 299 FSFGGSTVICVFEKDAIEIDEDLLANSARSLETLVSVGMKLGVATKKQATVNLPNFDNWV 358

Query: 74  I 74
           +
Sbjct: 359 L 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302818837|ref|XP_002991091.1| hypothetical protein SELMODRAFT_132807 [Selaginella moellendorffii] gi|300141185|gb|EFJ07899.1| hypothetical protein SELMODRAFT_132807 [Selaginella moellendorffii]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 5/66 (7%)

Query: 15  FSFLNYICLWVLQ-DAIQIDKDLLQNSARALETLVSVGMRMGVSKK----EILQTELPSL 69
           FSF    C+ V +  AI IDKDLL NS R+LETLVSVGM +GVS+K    +  +   P++
Sbjct: 524 FSFGGSTCICVFRAGAIDIDKDLLANSERSLETLVSVGMTLGVSRKLVGDQAFEKSRPTI 583

Query: 70  EACVIA 75
              V+A
Sbjct: 584 RDSVVA 589

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302820003|ref|XP_002991670.1| hypothetical protein SELMODRAFT_186269 [Selaginella moellendorffii] gi|300140519|gb|EFJ07241.1| hypothetical protein SELMODRAFT_186269 [Selaginella moellendorffii]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 5/66 (7%)

Query: 15  FSFLNYICLWVLQ-DAIQIDKDLLQNSARALETLVSVGMRMGVSKK----EILQTELPSL 69
           FSF    C+ V +  AI IDKDLL NS R+LETLVSVGM +GVS+K    +  +   P++
Sbjct: 524 FSFGGSTCICVFRAGAIDIDKDLLANSERSLETLVSVGMTLGVSRKLVGDQAFEKSRPTI 583

Query: 70  EACVIA 75
              V+A
Sbjct: 584 RDSVVA 589

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186513660|ref|NP_567736.3| phosphatidylserine decarboxylase 3 [Arabidopsis thaliana] gi|126673483|gb|ABO26297.1| phosphatidylserine decarboxylase [Arabidopsis thaliana] gi|332659738|gb|AEE85138.1| phosphatidylserine decarboxylase 3 [Arabidopsis thaliana]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 9/61 (14%)

Query: 15  FSFLNYICLWVLQ-DAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACV 73
           FSF     + V + D+I+ID+DLL NSAR+LETLV+VGM++GVS         P LE CV
Sbjct: 581 FSFGGSTVICVFEKDSIKIDEDLLANSARSLETLVTVGMQLGVS--------FPKLENCV 632

Query: 74  I 74
           +
Sbjct: 633 L 633

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
TAIR|locus:2120820	635	PSD3 "phosphatidylserine decar	0.671	0.080	0.516	7.5e-07
TAIR|locus:2175574	635	PSD2 "phosphatidylserine decar	0.671	0.080	0.537	2.6e-06

TAIR|locus:2120820 PSD3 "phosphatidylserine decarboxylase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 7.5e-07, P = 7.5e-07
 Identities = 32/62 (51%), Positives = 43/62 (69%)

Query:    15 FSF--LNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEAC 72
             FSF     IC++  +D+I+ID+DLL NSAR+LETLV+VGM++GVS         P LE C
Sbjct:   581 FSFGGSTVICVFE-KDSIKIDEDLLANSARSLETLVTVGMQLGVS--------FPKLENC 631

Query:    73 VI 74
             V+
Sbjct:   632 VL 633

GO:0004609 "phosphatidylserine decarboxylase activity" evidence=IEA;IGI;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008654 "phospholipid biosynthetic process" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2175574 PSD2 "phosphatidylserine decarboxylase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 29/54 (53%), Positives = 38/54 (70%)

Query:    15 FSF--LNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTEL 66
             FSF     IC++  +DAI ID DLL NS R+LETLVSVGM++GVS +   ++ L
Sbjct:   582 FSFGGSTVICVFE-KDAIGIDNDLLVNSGRSLETLVSVGMQLGVSTRTFARSTL 634


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.135   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       76        76   0.00091  102 3  11 22  0.42    28
                                                     29  0.48    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  488 (52 KB)
  Total size of DFA:  88 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.83u 0.12s 8.95t   Elapsed:  00:00:00
  Total cpu time:  8.83u 0.12s 8.95t   Elapsed:  00:00:00
  Start:  Fri May 10 04:50:30 2013   End:  Fri May 10 04:50:30 2013

GO:0004609 "phosphatidylserine decarboxylase activity" evidence=IEA;ISS;IMP;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008654 "phospholipid biosynthetic process" evidence=IEA;ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	76
PLN02964	644	PLN02964, PLN02964, phosphatidylserine decarboxyla	1e-16
PRK00723	297	PRK00723, PRK00723, phosphatidylserine decarboxyla	8e-05

>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase

 Score = 71.8 bits (176), Expect = 1e-16
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 15  FSFLNYICLWV-LQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACV 73
           FSF     + V  +DAI ID+DLL NS R+LETLVSVGM +GVS +   +  L      +
Sbjct: 584 FSFGGSTVICVFEKDAIDIDEDLLANSERSLETLVSVGMTLGVSTRTFARQVLEKSRPTI 643

Query: 74  I 74
            
Sbjct: 644 R 644

Length = 644

>gnl|CDD|179097 PRK00723, PRK00723, phosphatidylserine decarboxylase; Provisional

 Score = 38.4 bits (90), Expect = 8e-05
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 27  QDAIQIDKDLLQNSARALETLVSVGMRMGVSKKE 60
           ++ I+ID D+L+ S    ET V +G  +G     
Sbjct: 264 KNKIKIDADILEQSKLGYETKVLMGESIGRKFSS 297

Length = 297

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
PLN02964	644	phosphatidylserine decarboxylase	99.78
KOG2419	975	consensus Phosphatidylserine decarboxylase [Lipid	99.71
PRK00723	297	phosphatidylserine decarboxylase; Provisional	99.68
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.21
PRK03140	259	phosphatidylserine decarboxylase; Provisional	99.13
PRK00044	288	psd phosphatidylserine decarboxylase; Reviewed	99.1
TIGR00163	238	PS_decarb phosphatidylserine decarboxylase precurs	99.05
PTZ00403	353	phosphatidylserine decarboxylase; Provisional	99.01
PRK03934	265	phosphatidylserine decarboxylase; Provisional	98.9
PF02666	202	PS_Dcarbxylase: Phosphatidylserine decarboxylase;	98.81
PLN02938	428	phosphatidylserine decarboxylase	98.8
COG0688	239	Psd Phosphatidylserine decarboxylase [Lipid metabo	98.12
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	97.96
PRK05305	206	phosphatidylserine decarboxylase; Provisional	97.58
KOG2420	382	consensus Phosphatidylserine decarboxylase [Lipid	94.12

>PLN02964 phosphatidylserine decarboxylase

Probab=99.78  E-value=9.7e-20  Score=150.16  Aligned_cols=63  Identities=43%  Similarity=0.609  Sum_probs=55.5

Q ss_pred             eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceeceeccccccCCCCchhhh
Q 035021            9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEAC   72 (76)
Q Consensus         9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~~~~~~~~~~~~~~~~   72 (76)
                      |+|||.|||||||+||| +++|+||+||++||++|+||+|+|||+||++....-...+|.++-|
T Consensus       580 E~G~F~fGGSTvVllFe-~~~i~~d~dl~~~s~~~~Et~V~~Ge~iG~~~~~~~~~~~~~~~~~  642 (644)
T PLN02964        580 ELGYFSFGGSTVICVFE-KDAIDIDEDLLANSERSLETLVSVGMTLGVSTRTFARQVLEKSRPT  642 (644)
T ss_pred             EeeeeecCCceEEEEec-CCCcccChhhhhccccccceeEecChhhcccchhhccccccccccC
Confidence            78999999999999999 9999999999999999999999999999998877555555544443

>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]

Probab=99.71  E-value=9.5e-19  Score=147.59  Aligned_cols=58  Identities=40%  Similarity=0.543  Sum_probs=53.1

Q ss_pred             EeeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceeceeccccccCCC
Q 035021            8 YVMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTEL   66 (76)
Q Consensus         8 ~~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~~~~~~~~~~   66 (76)
                      -|+|||.|||||||++|| +|.+.||+|||.||++.+||+|+|||+||.+.+..++..+
T Consensus       910 dELGYFkFGGSTVI~vfe-~n~~~fDeDLl~NS~~~iETLVkvGm~iGv~i~~~~p~~~  967 (975)
T KOG2419|consen  910 DELGYFKFGGSTVICVFE-KNNIMFDEDLLKNSSRSIETLVKVGMQIGVSIKVDDPKKL  967 (975)
T ss_pred             cccceEeeCCeeEEEEEc-CCcccccHHHHhcchhhHHHHHHHHHhhceeccCCCcchh
Confidence            379999999999999999 9999999999999999999999999999988776665543

>PRK00723 phosphatidylserine decarboxylase; Provisional

Probab=99.68  E-value=1.1e-17  Score=126.51  Aligned_cols=48  Identities=27%  Similarity=0.321  Sum_probs=46.4

Q ss_pred             eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceecee
Q 035021            9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVS   57 (76)
Q Consensus         9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~   57 (76)
                      |+|||.||||||||||| +++|+||+||++||..|+||+|+|||+||.+
T Consensus       247 E~G~F~fGGSTvvllfe-~~~i~~~~~l~~~~~~~~~~~V~~G~~ig~~  294 (297)
T PRK00723        247 EKGYFKFGGSTVILFFE-KNKIKIDADILEQSKLGYETKVLMGESIGRK  294 (297)
T ss_pred             CccccccCCCcEEEEEc-CCccccChhhhhccccCcccEEEcCHHHhhh
Confidence            68999999999999999 9999999999999999999999999999964

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.21  E-value=6.3e-12  Score=102.51  Aligned_cols=41  Identities=20%  Similarity=0.227  Sum_probs=38.3

Q ss_pred             eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceecee
Q 035021            9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVS   57 (76)
Q Consensus         9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~   57 (76)
                      |+|||+| ||||||||+ +++|+||+||.++++      |||||+||.-
T Consensus       567 E~G~F~~-GSTvvllf~-~~~~~~~~~l~~~~~------v~~Gq~lg~~  607 (610)
T PRK09629        567 EMGRFKL-GSTAIVLFG-PNQVKWAEQLTAGSK------VQMGQALAVP  607 (610)
T ss_pred             eeeEecc-CCeEEEEec-CCceecCccccCCCE------EeechhhCCc
Confidence            7899999 699999999 999999999999985      9999999953

>PRK03140 phosphatidylserine decarboxylase; Provisional

Probab=99.13  E-value=2.6e-11  Score=90.02  Aligned_cols=41  Identities=24%  Similarity=0.408  Sum_probs=37.7

Q ss_pred             eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceecee
Q 035021            9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVS   57 (76)
Q Consensus         9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~   57 (76)
                      ++|||.|| |||+|+|| +++++||.|+.++.      +|++||+||..
T Consensus       218 e~G~F~fG-Stvvllf~-~~~~~~~~~~~~g~------~V~~Ge~ig~~  258 (259)
T PRK03140        218 EMAYFSFG-STVVLLFE-KDMIEPDQELKSGQ------EVRLGEKIGTR  258 (259)
T ss_pred             EeeeeccC-CeEEEEEe-CCccccchhhcCCC------EEEcChhhccc
Confidence            78999997 99999999 99999999999985      49999999964

>PRK00044 psd phosphatidylserine decarboxylase; Reviewed

Probab=99.10  E-value=4.1e-11  Score=89.96  Aligned_cols=42  Identities=19%  Similarity=0.192  Sum_probs=37.8

Q ss_pred             eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceeceec
Q 035021            9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSK   58 (76)
Q Consensus         9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~~   58 (76)
                      ++|||.| ||||||+|| +++++||.++..+.+      |++||.||...
T Consensus       245 e~G~F~f-GStVvllfe-~~~~~~~~~v~~g~k------V~~Ge~ig~~~  286 (288)
T PRK00044        245 EMGRFKL-GSTVINLFP-PGKVQLAEQLQAGSV------VRMGQPLAHIT  286 (288)
T ss_pred             EeecccC-CCeEEEEEe-CCCceeccccCCCCE------EEcChhhcCcc
Confidence            6899999 799999999 999999999987754      99999999654

>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor

Probab=99.05  E-value=9.8e-11  Score=85.77  Aligned_cols=41  Identities=22%  Similarity=0.211  Sum_probs=38.0

Q ss_pred             eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceecee
Q 035021            9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVS   57 (76)
Q Consensus         9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~   57 (76)
                      ++|||.| ||||||+|| ++++.|+.|+..+++      |++||.||..
T Consensus       197 e~G~F~f-GStVvllf~-~~~~~~~~~v~~g~k------V~~Ge~lg~~  237 (238)
T TIGR00163       197 EMGYFEL-GSTVILLFE-ADAFQLSAHLAVGQE------VKIGELLAYE  237 (238)
T ss_pred             EeeeEcC-CCeEEEEEe-CCCcccChhhccCCE------EEcChhhccC
Confidence            6899999 799999999 999999999999976      9999999953

Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.

>PTZ00403 phosphatidylserine decarboxylase; Provisional

Probab=99.01  E-value=1.9e-10  Score=89.87  Aligned_cols=42  Identities=17%  Similarity=0.224  Sum_probs=35.8

Q ss_pred             eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceeceecc
Q 035021            9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKK   59 (76)
Q Consensus         9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~~~   59 (76)
                      |+|||+| |||||+||| +++ .|+.++..+.+      |||||+||....
T Consensus       299 ElG~F~~-GSTVVllFe-~~~-~~~~~l~~g~~------Vr~Gq~lg~~~~  340 (353)
T PTZ00403        299 EVGEFRM-GSSIVVIFE-NKK-NFSWNVKPNQT------VSVGQRLGGVGE  340 (353)
T ss_pred             eeeEecc-CCeEEEEEe-CCC-cCCcccCCCCE------EEeeeeccccCC
Confidence            7999999 999999999 776 78888877755      999999995443

>PRK03934 phosphatidylserine decarboxylase; Provisional

Probab=98.90  E-value=1e-09  Score=81.76  Aligned_cols=38  Identities=8%  Similarity=0.086  Sum_probs=33.5

Q ss_pred             eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceece
Q 035021            9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGV   56 (76)
Q Consensus         9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~   56 (76)
                      |+|||.| ||||||+|| +++++|+-+        .+++|++||.||.
T Consensus       227 e~G~F~f-GSTVvllf~-~~~~~~~v~--------~g~~V~~Ge~ig~  264 (265)
T PRK03934        227 ELGNFEM-GSTIVLFSQ-KGSLEFNLK--------AGKSVKFGESIGE  264 (265)
T ss_pred             EeeEEcc-CCEEEEEEe-CCcceEccC--------CCCEEEcchhhcc
Confidence            7999999 799999999 999999743        4678999999984

>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria

Probab=98.81  E-value=3.6e-09  Score=74.96  Aligned_cols=39  Identities=18%  Similarity=0.131  Sum_probs=33.4

Q ss_pred             eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceece
Q 035021            9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGV   56 (76)
Q Consensus         9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~   56 (76)
                      ++|||.| ||||+|+|| ++++.       +..-..++.|++||.||.
T Consensus       164 e~G~f~f-GStvvl~f~-~~~~~-------~~~v~~g~~V~~Ge~i~~  202 (202)
T PF02666_consen  164 ELGYFRF-GSTVVLLFP-KDKIF-------EWSVKPGQKVRAGETIGY  202 (202)
T ss_pred             EeCEEec-CCeEEEEEe-CCCcc-------ccccCCCCEEEeeeEEeC
Confidence            6899999 999999999 88764       556667788999999983

The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process

>PLN02938 phosphatidylserine decarboxylase

Probab=98.80  E-value=2.5e-09  Score=85.69  Aligned_cols=41  Identities=7%  Similarity=0.056  Sum_probs=34.8

Q ss_pred             eeeeeeeCCeeEEEEEeeCCe-------------EEEchhhHhhcccceeEEEEecceecee
Q 035021            9 VMTASTFSFLNYICLWVLQDA-------------IQIDKDLLQNSARALETLVSVGMRMGVS   57 (76)
Q Consensus         9 ~~GyF~FGGSTVIlLfe~k~~-------------I~~D~DLl~nS~~giET~VkmGe~IG~~   57 (76)
                      |||||.| ||||||+|| ++.             +.|+.++.++.+      |||||.||..
T Consensus       372 E~G~F~l-GSTVVLvFE-ap~~~~~~~~~~~~~~~~~~~~l~~G~~------Vk~Gq~LG~~  425 (428)
T PLN02938        372 EVAVFNL-GSTVVLVFE-APVEVEPLFKVLDQSSSDFRFCVRKGDR------IRVGQALGRW  425 (428)
T ss_pred             EeeeecC-CCeEEEEEe-CCcccccccccccccccCccccccCCCE------EEcchhhccc
Confidence            7999999 999999999 765             567777777766      9999999954

>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]

Probab=98.12  E-value=1e-06  Score=65.66  Aligned_cols=39  Identities=10%  Similarity=0.197  Sum_probs=35.2

Q ss_pred             EeeeeeeeC--CeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecce
Q 035021            8 YVMTASTFS--FLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMR   53 (76)
Q Consensus         8 ~~~GyF~FG--GSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~   53 (76)
                      -++|||+||  |||+|.+|+ ++++.+++++.+++.      |++|++
T Consensus       198 ~~~G~~~fGs~gstvip~~~-~~~v~~~~~v~~g~t------v~~~~~  238 (239)
T COG0688         198 ERIGGIRFGSRGSTVLPLFA-EPRVAVGERVVAGET------VLAGEK  238 (239)
T ss_pred             hhhhhhhhCCcccEEEecCC-CceeeeccccccCce------EEeeec
Confidence            368999999  999999999 999999999999988      777664

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=97.96  E-value=6.5e-06  Score=58.54  Aligned_cols=36  Identities=8%  Similarity=-0.022  Sum_probs=27.8

Q ss_pred             eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceec
Q 035021            9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMG   55 (76)
Q Consensus         9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG   55 (76)
                      ++|+|.| ||||+++|| ++ +  +-++-.+.+      |++||.+.
T Consensus       147 eiG~f~f-GStv~ll~p-~~-~--~~~v~~G~~------V~~G~tli  182 (189)
T TIGR00164       147 RIGMIRF-GSRVDLYLP-EN-A--QAQVKVGEK------VTAGETVL  182 (189)
T ss_pred             EEEEEec-CCeEEEEEc-CC-C--ccccCCCCE------EEeceEEE
Confidence            6899999 599999999 87 3  334555555      99999664

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=97.58  E-value=5.7e-05  Score=54.36  Aligned_cols=34  Identities=9%  Similarity=-0.091  Sum_probs=25.0

Q ss_pred             eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecce
Q 035021            9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMR   53 (76)
Q Consensus         9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~   53 (76)
                      ++|+|.| ||||+++|| ++.   +-+...+.+      |++||.
T Consensus       167 ~~G~f~f-GStV~l~~p-~~~---~~~V~~G~k------V~~Get  200 (206)
T PRK05305        167 RFGLIRF-GSRVDVYLP-LGT---EPLVSVGQK------VVAGET  200 (206)
T ss_pred             EEeEEec-CCeEEEEEc-CCC---cccccCCCE------EEcccE
Confidence            6899999 599999999 772   333444444      888874

>KOG2420 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]

Probab=94.12  E-value=0.038  Score=44.76  Aligned_cols=37  Identities=11%  Similarity=0.152  Sum_probs=28.1

Q ss_pred             eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEeccee
Q 035021            9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRM   54 (76)
Q Consensus         9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~I   54 (76)
                      .+|=|.. ||||+++||-+..++||  +....+      |||||++
T Consensus       346 ~~g~f~l-GStivl~feap~~fkf~--~~~gq~------vr~ge~l  382 (382)
T KOG2420|consen  346 RVGEFRL-GSTIVLVFEAPKDFKFD--IKAGQK------VRVGESL  382 (382)
T ss_pred             ccccEec-CcEEEEEEeCCCcceee--eecCce------eeccccC
Confidence            4678999 99999999977777776  344444      8888764

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00