Citrus Sinensis ID: 035086

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MDIFSSALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVVIRSQ
Secondary Structure (PSIPRED)
ccccccEEcEEEEEEcHHHHHHHHHHccccEEEEEEccccccccccEEcccccccccccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccHHcccHHHHHHHHHHccccEEEEEEEccEEcccccEEcccccHHHHHHccccccccEEEccc
Coil and Loop (DISEMBL)
mdifssalcvseshqapqgvhvvcksfprlkivtseidiglnedfrvipgmgefgdryfgtddddqqVVIRSQ
Flexible Loop (DISEMBL)
MDIFSSALCvseshqapqgvhvVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGdryfgtddddqQVVIRSQ
Low Complexity Region (SEG)
MDIFSSALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVVIRSQ
Disordered region (IsUnstruct)
********C*******PQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT************
Disordered Region (DISOPRED)
*DIFSSALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDD********
Disordered Region (DISEMBL)
MDIFSSALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVVIRSQ
Disordered Region (DISPRO)
MDIFSSALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQV*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDIFSSALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVVIRSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	73	2.2.26 [Sep-21-2011]
O65583	469	Uridine kinase-like prote	yes	no	0.671	0.104	0.918	4e-21
Q8VYB2	466	Uridine kinase-like prote	no	no	0.671	0.105	0.795	5e-19
Q9FKS0	486	Uridine kinase-like prote	no	no	0.698	0.104	0.764	5e-18
Q9LK34	483	Uridine kinase-like prote	no	no	0.657	0.099	0.791	2e-17
Q9LTY6	465	Uridine kinase-like prote	no	no	0.808	0.126	0.621	5e-17
Q91YL3	548	Uridine-cytidine kinase-l	yes	no	0.863	0.114	0.445	3e-11
Q9NWZ5	548	Uridine-cytidine kinase-l	yes	no	0.753	0.100	0.5	5e-11
Q26998	244	Uracil phosphoribosyltran	N/A	no	0.630	0.188	0.521	3e-10
Q55GQ6	216	Uracil phosphoribosyltran	yes	no	0.657	0.222	0.520	2e-09
Q7VZ79	213	Uracil phosphoribosyltran	yes	no	0.630	0.215	0.5	2e-07

>sp|O65583|UKL4_ARATH Uridine kinase-like protein 4 OS=Arabidopsis thaliana GN=UKL4 PE=1 SV=2

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/49 (91%), Positives = 47/49 (95%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDD 64
           APQGVHVVCK FPR+KIVTSEID GLNE+FRVIPGMGEFGDRYFGTDDD
Sbjct: 421 APQGVHVVCKKFPRIKIVTSEIDNGLNEEFRVIPGMGEFGDRYFGTDDD 469

Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 9

>sp|Q8VYB2|UKL3_ARATH Uridine kinase-like protein 3 OS=Arabidopsis thaliana GN=UKL3 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDD 64
           AP+GV+VVCK FPR+KIVTSEI++GLN++FRV+PGMGEFGDRYFGTDD+
Sbjct: 418 APEGVNVVCKKFPRIKIVTSEIELGLNDEFRVVPGMGEFGDRYFGTDDE 466

Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 9

>sp|Q9FKS0|UKL1_ARATH Uridine kinase-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=UKL1 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 39/51 (76%), Positives = 46/51 (90%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQ 66
           AP+G+H VCK FP LKIVTSEID  LN++FRVIPG+GEFGDRYFGTD++DQ
Sbjct: 436 APEGIHCVCKRFPALKIVTSEIDQCLNQEFRVIPGLGEFGDRYFGTDEEDQ 486

Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 9

>sp|Q9LK34|UKL2_ARATH Uridine kinase-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=UKL2 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 44/48 (91%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDD 63
           AP+G+H VCK FP+LKIVTSEID  LNE+FRVIPG+GEFGDRYFGTD+
Sbjct: 436 APEGIHCVCKRFPKLKIVTSEIDQCLNEEFRVIPGLGEFGDRYFGTDE 483

Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 9

>sp|Q9LTY6|UKL5_ARATH Uridine kinase-like protein 5 OS=Arabidopsis thaliana GN=UKL5 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 48/66 (72%), Gaps = 7/66 (10%)

Query: 10  VSESH-------QAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62
           V ESH        APQG+H +CK FP LKIVTSEID  LNED RVIPG+GEF DRYFGT+
Sbjct: 389 VPESHIIFLNLIAAPQGIHALCKKFPMLKIVTSEIDSSLNEDSRVIPGLGEFADRYFGTN 448

Query: 63  DDDQQV 68
           + + +V
Sbjct: 449 NINSKV 454

Involved in the pyrimidine salvage pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 9

>sp|Q91YL3|UCKL1_MOUSE Uridine-cytidine kinase-like 1 OS=Mus musculus GN=Uckl1 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 11/74 (14%)

Query: 3   IFSSALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62
           IF  +L ++E      GVH V  +FPR++I+T+ +D  +N+ FR+IPG+G FGDRYFGTD
Sbjct: 479 IFLLSLLMAE-----MGVHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFGDRYFGTD 533

Query: 63  ------DDDQQVVI 70
                 DDD+   +
Sbjct: 534 AVPDGSDDDEAATV 547

May contribute to UTP accumulation needed for blast transformation and proliferation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q9NWZ5|UCKL1_HUMAN Uridine-cytidine kinase-like 1 OS=Homo sapiens GN=UCKL1 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 43/60 (71%), Gaps = 5/60 (8%)

Query: 3   IFSSALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62
           IF  +L ++E      GVH V  +FPR++I+T+ +D  +N+ FR+IPG+G FGDRYFGTD
Sbjct: 479 IFLLSLLMAE-----MGVHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFGDRYFGTD 533

May contribute to UTP accumulation needed for blast transformation and proliferation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q26998|UPP_TOXGO Uracil phosphoribosyltransferase OS=Toxoplasma gondii GN=uprt PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 37/46 (80%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           APQG+  V K +P++++VT+ +DI LN  + ++PG+G+FGDRYFGT
Sbjct: 198 APQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 243

Catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate.

Toxoplasma gondii (taxid: 5811)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 9

>sp|Q55GQ6|UPP_DICDI Uracil phosphoribosyltransferase OS=Dictyostelium discoideum GN=uprt PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 36/48 (75%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDD 63
           +P+G+ V    +PR+K+VT EID  LNE   +IPG+G+FG+ YFGT+D
Sbjct: 169 SPEGIKVFTDKYPRVKVVTGEIDSHLNEKKYIIPGLGDFGNLYFGTED 216

Catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 9

>sp|Q7VZ79|UPP_BORPE Uracil phosphoribosyltransferase OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=upp PE=3 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+G+  V K+ P ++I T+ ID GLNE+  ++PG+G+ GDR FGT
Sbjct: 162 APEGIDAVLKAHPDVQIYTASIDQGLNENGYIMPGLGDAGDRIFGT 207

Catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate.

Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) (taxid: 257313)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
356527242	477	PREDICTED: uridine kinase-like protein 4	0.794	0.121	0.896	6e-24
297613682	456	uridine cytidine kinase [Carica papaya]	0.794	0.127	0.896	2e-23
147865432	652	hypothetical protein VITISV_008796 [Viti	0.739	0.082	0.944	2e-23
225463508	479	PREDICTED: uridine kinase-like protein 4	0.739	0.112	0.944	2e-23
255557206	482	uridine cytidine kinase I, putative [Ric	0.794	0.120	0.879	5e-23
356552443	478	PREDICTED: uridine kinase-like protein 4	0.794	0.121	0.879	1e-22
224122116	482	predicted protein [Populus trichocarpa]	0.794	0.120	0.844	7e-22
356499471	475	PREDICTED: uridine kinase-like protein 4	0.712	0.109	0.923	2e-21
357460287	476	Uridine-cytidine kinase, putative [Medic	0.780	0.119	0.862	3e-21
357460289	466	Uridine-cytidine kinase, putative [Medic	0.780	0.122	0.862	3e-21

>gi|356527242|ref|XP_003532221.1| PREDICTED: uridine kinase-like protein 4-like [Glycine max]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/58 (89%), Positives = 57/58 (98%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVVIRSQ 73
           AP+GVHVVCKSFPR+KIVTSEI+IGLNEDFRVIPGMGEFGDRYFGTDDDD+QVV+ SQ
Sbjct: 420 APKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDEQVVVSSQ 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297613682|gb|ADI48274.1| uridine cytidine kinase [Carica papaya]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/58 (89%), Positives = 56/58 (96%)

Query: 15  QAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVVIRS 72
           QAPQGVHVVCK FPRLKIVTSEI+IGLNEDFRV+PGMGEFGDRYFGTDDD++QVVI S
Sbjct: 399 QAPQGVHVVCKRFPRLKIVTSEIEIGLNEDFRVVPGMGEFGDRYFGTDDDERQVVIGS 456

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865432|emb|CAN83667.1| hypothetical protein VITISV_008796 [Vitis vinifera]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/54 (94%), Positives = 54/54 (100%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVV 69
           APQGVHVVCKSFPR+KIVTSEID+GLNEDFRVIPGMGEFGDRYFGTDDDDQQ+V
Sbjct: 595 APQGVHVVCKSFPRIKIVTSEIDVGLNEDFRVIPGMGEFGDRYFGTDDDDQQLV 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463508|ref|XP_002263911.1| PREDICTED: uridine kinase-like protein 4 [Vitis vinifera] gi|296090033|emb|CBI39852.3| unnamed protein product [Vitis vinifera]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/54 (94%), Positives = 54/54 (100%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVV 69
           APQGVHVVCKSFPR+KIVTSEID+GLNEDFRVIPGMGEFGDRYFGTDDDDQQ+V
Sbjct: 422 APQGVHVVCKSFPRIKIVTSEIDVGLNEDFRVIPGMGEFGDRYFGTDDDDQQLV 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557206|ref|XP_002519634.1| uridine cytidine kinase I, putative [Ricinus communis] gi|223541224|gb|EEF42779.1| uridine cytidine kinase I, putative [Ricinus communis]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/58 (87%), Positives = 55/58 (94%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVVIRSQ 73
           APQGVHVVCK FPR+KIVTSEI+IGLNEDFRVIPGMGEFGDRYFGTDDDDQ VV+ +Q
Sbjct: 422 APQGVHVVCKRFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDQPVVVPTQ 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552443|ref|XP_003544577.1| PREDICTED: uridine kinase-like protein 4-like [Glycine max]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/58 (87%), Positives = 55/58 (94%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVVIRSQ 73
           APQGVHVVCK FPR+KI+TSEI+IGLNEDFRVIPGMGEFGDRYFGTD+DDQQVV  SQ
Sbjct: 421 APQGVHVVCKRFPRIKILTSEIEIGLNEDFRVIPGMGEFGDRYFGTDNDDQQVVPPSQ 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122116|ref|XP_002330545.1| predicted protein [Populus trichocarpa] gi|222872103|gb|EEF09234.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/58 (84%), Positives = 53/58 (91%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVVIRSQ 73
           APQGVHVVCK FPR+KIVTSEI+ GLNEDFRVIPGMGEFGDRYFGTDDDD+ VV  +Q
Sbjct: 422 APQGVHVVCKRFPRIKIVTSEIETGLNEDFRVIPGMGEFGDRYFGTDDDDELVVAHTQ 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499471|ref|XP_003518563.1| PREDICTED: uridine kinase-like protein 4-like [Glycine max]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/52 (92%), Positives = 50/52 (96%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQ 67
           APQGVHVVCK FPR+KIVTSEI+IGLNE FRVIPGMGEFGDRYFGTDDDDQQ
Sbjct: 421 APQGVHVVCKRFPRIKIVTSEIEIGLNEAFRVIPGMGEFGDRYFGTDDDDQQ 472

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460287|ref|XP_003600425.1| Uridine-cytidine kinase, putative [Medicago truncatula] gi|355489473|gb|AES70676.1| Uridine-cytidine kinase, putative [Medicago truncatula]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/58 (86%), Positives = 55/58 (94%), Gaps = 1/58 (1%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVVIRSQ 73
           AP+GVHVVCK FPR+KIVTSEI+IGLNEDFRVIPGMGEFGDRYFGT DDD+QVV+ SQ
Sbjct: 420 APKGVHVVCKCFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGT-DDDEQVVVASQ 476

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460289|ref|XP_003600426.1| Uridine-cytidine kinase, putative [Medicago truncatula] gi|355489474|gb|AES70677.1| Uridine-cytidine kinase, putative [Medicago truncatula]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/58 (86%), Positives = 55/58 (94%), Gaps = 1/58 (1%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVVIRSQ 73
           AP+GVHVVCK FPR+KIVTSEI+IGLNEDFRVIPGMGEFGDRYFGT DDD+QVV+ SQ
Sbjct: 410 APKGVHVVCKCFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGT-DDDEQVVVASQ 466

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
TAIR|locus:2131498	469	UKL4 "AT4G26510" [Arabidopsis	0.671	0.104	0.918	2.6e-20
TAIR|locus:2012125	466	UKL3 "AT1G55810" [Arabidopsis	0.671	0.105	0.795	1.9e-18
TAIR|locus:2164516	486	UK/UPRT1 "AT5G40870" [Arabidop	0.698	0.104	0.764	2e-17
TAIR|locus:2086523	483	UKL2 "AT3G27190" [Arabidopsis	0.657	0.099	0.791	1.2e-16
TAIR|locus:2086691	465	UKL5 "AT3G27440" [Arabidopsis	0.726	0.113	0.698	1.3e-15
UNIPROTKB|F1NB19	511	UCKL1 "Uridine kinase" [Gallus	0.643	0.091	0.595	1.2e-10
MGI|MGI:1915806	548	Uckl1 "uridine-cytidine kinase	0.753	0.100	0.491	1.3e-10
UNIPROTKB|E1BP85	548	UCKL1 "Uridine kinase" [Bos ta	0.643	0.085	0.574	2.8e-10
UNIPROTKB|F8WAC3	548	UCKL1 "Uridine kinase" [Homo s	0.643	0.085	0.574	2.8e-10
UNIPROTKB|Q9NWZ5	548	UCKL1 "Uridine-cytidine kinase	0.643	0.085	0.574	2.8e-10

TAIR|locus:2131498 UKL4 "AT4G26510" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 45/49 (91%), Positives = 47/49 (95%)

Query:    16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDD 64
             APQGVHVVCK FPR+KIVTSEID GLNE+FRVIPGMGEFGDRYFGTDDD
Sbjct:   421 APQGVHVVCKKFPRIKIVTSEIDNGLNEEFRVIPGMGEFGDRYFGTDDD 469

GO:0004845 "uracil phosphoribosyltransferase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=ISS

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2012125 UKL3 "AT1G55810" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query:    16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDD 64
             AP+GV+VVCK FPR+KIVTSEI++GLN++FRV+PGMGEFGDRYFGTDD+
Sbjct:   418 APEGVNVVCKKFPRIKIVTSEIELGLNDEFRVVPGMGEFGDRYFGTDDE 466

GO:0004845 "uracil phosphoribosyltransferase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=ISS

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2164516 UK/UPRT1 "AT5G40870" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 39/51 (76%), Positives = 46/51 (90%)

Query:    16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQ 66
             AP+G+H VCK FP LKIVTSEID  LN++FRVIPG+GEFGDRYFGTD++DQ
Sbjct:   436 APEGIHCVCKRFPALKIVTSEIDQCLNQEFRVIPGLGEFGDRYFGTDEEDQ 486

GO:0004845 "uracil phosphoribosyltransferase activity" evidence=IGI;ISS;IDA

GO:0005524 "ATP binding" evidence=ISS

GO:0009058 "biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0004849 "uridine kinase activity" evidence=IGI;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016310 "phosphorylation" evidence=IDA

GO:0044206 "UMP salvage" evidence=IDA

GO:2000904 "regulation of starch metabolic process" evidence=IMP

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2086523 UKL2 "AT3G27190" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 38/48 (79%), Positives = 44/48 (91%)

Query:    16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDD 63
             AP+G+H VCK FP+LKIVTSEID  LNE+FRVIPG+GEFGDRYFGTD+
Sbjct:   436 APEGIHCVCKRFPKLKIVTSEIDQCLNEEFRVIPGLGEFGDRYFGTDE 483

GO:0004845 "uracil phosphoribosyltransferase activity" evidence=ISS;IDA

GO:0005524 "ATP binding" evidence=ISS

GO:0009058 "biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0004849 "uridine kinase activity" evidence=IDA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IMP

GO:0016310 "phosphorylation" evidence=IDA

GO:0044206 "UMP salvage" evidence=IDA

GO:1901141 "regulation of lignin biosynthetic process" evidence=IMP

GO:2000904 "regulation of starch metabolic process" evidence=IMP

GO:2001006 "regulation of cellulose biosynthetic process" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2086691 UKL5 "AT3G27440" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 37/53 (69%), Positives = 44/53 (83%)

Query:    16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQV 68
             APQG+H +CK FP LKIVTSEID  LNED RVIPG+GEF DRYFGT++ + +V
Sbjct:   402 APQGIHALCKKFPMLKIVTSEIDSSLNEDSRVIPGLGEFADRYFGTNNINSKV 454

GO:0004845 "uracil phosphoribosyltransferase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

UNIPROTKB|F1NB19 UCKL1 "Uridine kinase" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 28/47 (59%), Positives = 37/47 (78%)

Query:    16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62
             A  GVH V  +FPR+KI+T+ +D  +N+ FR+IPG+G FGDRYFGTD
Sbjct:   451 AEMGVHSVAYAFPRVKIITTAVDKKVNDLFRIIPGIGNFGDRYFGTD 497

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0044206 "UMP salvage" evidence=IEA

GO:0044211 "CTP salvage" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

MGI|MGI:1915806 Uckl1 "uridine-cytidine kinase 1-like 1" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 30/61 (49%), Positives = 42/61 (68%)

Query:    16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD------DDDQQVV 69
             A  GVH V  +FPR++I+T+ +D  +N+ FR+IPG+G FGDRYFGTD      DDD+   
Sbjct:   487 AEMGVHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFGDRYFGTDAVPDGSDDDEAAT 546

Query:    70 I 70
             +
Sbjct:   547 V 547

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|E1BP85 UCKL1 "Uridine kinase" [Bos taurus (taxid:9913)]

 Score = 155 (59.6 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query:    16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62
             A  GVH V  +FPR++I+T+ +D  +N+ FR+IPG+G FGDRYFGTD
Sbjct:   487 AEMGVHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFGDRYFGTD 533

GO:0044211 "CTP salvage" evidence=IEA

GO:0044206 "UMP salvage" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|F8WAC3 UCKL1 "Uridine kinase" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query:    16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62
             A  GVH V  +FPR++I+T+ +D  +N+ FR+IPG+G FGDRYFGTD
Sbjct:   487 AEMGVHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFGDRYFGTD 533

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0044206 "UMP salvage" evidence=IEA

GO:0044211 "CTP salvage" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q9NWZ5 UCKL1 "Uridine-cytidine kinase-like 1" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query:    16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62
             A  GVH V  +FPR++I+T+ +D  +N+ FR+IPG+G FGDRYFGTD
Sbjct:   487 AEMGVHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFGDRYFGTD 533

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044206 "UMP salvage" evidence=IEA

GO:0044211 "CTP salvage" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O65583	UKL4_ARATH	2, ., 4, ., 2, ., 9	0.9183	0.6712	0.1044	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	73
COG0035	210	COG0035, Upp, Uracil phosphoribosyltransferase [Nu	3e-12
TIGR01091	207	TIGR01091, upp, uracil phosphoribosyltransferase	2e-10
PRK00129	209	PRK00129, upp, uracil phosphoribosyltransferase; R	4e-09
PLN02541	244	PLN02541, PLN02541, uracil phosphoribosyltransfera	3e-08

>gnl|CDD|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]

 Score = 58.3 bits (142), Expect = 3e-12
 Identities = 23/47 (48%), Positives = 33/47 (70%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62
           AP+G+  V K+ P ++I T+ ID GLNE   ++PG+G+ GDR FGT 
Sbjct: 164 APEGIKAVEKAHPDVEIYTAAIDEGLNEKGYIVPGLGDAGDRLFGTK 210

Length = 210

>gnl|CDD|130163 TIGR01091, upp, uracil phosphoribosyltransferase

 Score = 53.4 bits (129), Expect = 2e-10
 Identities = 21/46 (45%), Positives = 32/46 (69%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+G+  V K+ P + I T+ ID  LN++  ++PG+G+ GDR FGT
Sbjct: 161 APEGIEAVEKAHPDVDIYTAAIDEKLNDNGYIVPGLGDAGDRAFGT 206

A fairly deep split in phylogenetic and UPGMA trees separates this mostly prokaryotic set of uracil phosphoribosyltransferases from a mostly eukaryotic set that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207

>gnl|CDD|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed

 Score = 49.7 bits (120), Expect = 4e-09
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+G+  + ++ P ++I T+ ID  LNE   ++PG+G+ GDR FGT
Sbjct: 163 APEGIKALEEAHPDVEIYTAAIDEKLNEHGYIVPGLGDAGDRLFGT 208

Length = 209

>gnl|CDD|215297 PLN02541, PLN02541, uracil phosphoribosyltransferase

 Score = 47.5 bits (113), Expect = 3e-08
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP  +  + + FP L +    ID  +NE   ++PG+G+ GDR FGT
Sbjct: 198 APPALKKLSEKFPGLHVYAGIIDEEVNEKGYIVPGLGDAGDRSFGT 243

Length = 244

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	73
COG0035	210	Upp Uracil phosphoribosyltransferase [Nucleotide t	99.91
PF14681	207	UPRTase: Uracil phosphoribosyltransferase; PDB: 1V	99.9
PLN02541	244	uracil phosphoribosyltransferase	99.9
TIGR01091	207	upp uracil phosphoribosyltransferase. that include	99.87
PRK00129	209	upp uracil phosphoribosyltransferase; Reviewed	99.87
KOG4203	473	consensus Armadillo/beta-Catenin/plakoglobin [Sign	99.22
KOG1017	267	consensus Predicted uracil phosphoribosyltransfera	97.15

>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]

Probab=99.91  E-value=7e-25  Score=158.36  Aligned_cols=55  Identities=44%  Similarity=0.740  Sum_probs=51.5

Q ss_pred             hcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            8 LCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         8 l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      +.+++++|||+||+++.++||+++||||+||++|||++||+||+||||||+|||+
T Consensus       156 I~~v~~vAapeGi~~v~~~~p~v~I~ta~iD~~Lne~gYIvPGLGDaGDR~fGt~  210 (210)
T COG0035         156 IKVVSLVAAPEGIKAVEKAHPDVEIYTAAIDEGLNEKGYIVPGLGDAGDRLFGTK  210 (210)
T ss_pred             EEEEEEEecHHHHHHHHHhCCCCeEEEEEeccccccCCCCccCCCcccccccCCC
Confidence            4455669999999999999999999999999999999999999999999999985

>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C

Probab=99.90  E-value=5.3e-25  Score=155.07  Aligned_cols=56  Identities=39%  Similarity=0.771  Sum_probs=50.1

Q ss_pred             hhhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCC
Q 035086            6 SALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT   61 (73)
Q Consensus         6 ~~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt   61 (73)
                      +.+.+++++||++||+++.++||+++||||+||++||+++||+||+||||||||||
T Consensus       152 ~~I~~v~~ias~~Gl~~l~~~~P~v~I~ta~iD~~L~~~~~i~PGlGD~GdR~fgT  207 (207)
T PF14681_consen  152 ENIIIVSVIASPEGLERLLKAFPDVRIYTAAIDPELNENGYIVPGLGDAGDRYFGT  207 (207)
T ss_dssp             GEEEEEEEEEEHHHHHHHHHHSTTSEEEEEEEESEEETTSEEESS-S-HHHHHHT-
T ss_pred             ceEEEEEEEecHHHHHHHHHhCCCeEEEEEEEccccCCCCCccCCCCChHhcccCc
Confidence            34567788999999999999999999999999999999999999999999999997

...

>PLN02541 uracil phosphoribosyltransferase

Probab=99.90  E-value=1.4e-24  Score=158.48  Aligned_cols=55  Identities=35%  Similarity=0.605  Sum_probs=52.6

Q ss_pred             hhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCC
Q 035086            7 ALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT   61 (73)
Q Consensus         7 ~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt   61 (73)
                      .+.++|+||||+||+++.++||+++||||+||++||+++||+|||||||||||||
T Consensus       189 ~I~~v~~ias~~Gl~~i~~~fP~v~I~ta~ID~~Lne~~yIvPGlGDaGDR~fGt  243 (244)
T PLN02541        189 QIRVVCAVAAPPALKKLSEKFPGLHVYAGIIDEEVNEKGYIVPGLGDAGDRSFGT  243 (244)
T ss_pred             cEEEEEEEECHHHHHHHHHHCcCCEEEEEEECccccCCCcCcCCCCCccccccCC
Confidence            4667788999999999999999999999999999999999999999999999998

>TIGR01091 upp uracil phosphoribosyltransferase

Probab=99.87  E-value=7.2e-23  Score=144.26  Aligned_cols=55  Identities=40%  Similarity=0.675  Sum_probs=51.7

Q ss_pred             hcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            8 LCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         8 l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      +.+++++++|+|++++.++||+++|||++||++||+++||+||+||||||||||.
T Consensus       153 I~v~~ll~~~~gl~~l~~~~p~v~i~~~~id~~l~~~~yivPGlGd~Gdr~fgt~  207 (207)
T TIGR01091       153 IKVLSIVAAPEGIEAVEKAHPDVDIYTAAIDEKLNDNGYIVPGLGDAGDRAFGTK  207 (207)
T ss_pred             EEEEEEecCHHHHHHHHHHCCCCEEEEEEECCCccCCccCcCCCCCccccccCCC
Confidence            4556779999999999999999999999999999999999999999999999983

that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.

>PRK00129 upp uracil phosphoribosyltransferase; Reviewed

Probab=99.87  E-value=8.8e-23  Score=143.76  Aligned_cols=55  Identities=38%  Similarity=0.645  Sum_probs=51.4

Q ss_pred             hcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            8 LCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         8 l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      +.+++++++++|++++.++||+++||||+||++||+++||+||+||||||||||.
T Consensus       155 I~~~~ll~~~~gl~~l~~~~p~v~i~~~~iD~~l~~~~yi~PGlGd~Gdr~fgt~  209 (209)
T PRK00129        155 IKVLCLVAAPEGIKALEEAHPDVEIYTAAIDEKLNEHGYIVPGLGDAGDRLFGTK  209 (209)
T ss_pred             EEEEEEecCHHHHHHHHHHCCCcEEEEEeecCCcCCCCcCCCCCCCccccccCCC
Confidence            4455679999999999999999999999999999999999999999999999983

>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]

Probab=99.22  E-value=5.1e-12  Score=99.37  Aligned_cols=53  Identities=58%  Similarity=0.955  Sum_probs=49.9

Q ss_pred             ccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086           10 VSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus        10 ~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      +++++++++|+++++.+||.++++|+++|+.+|+++|++||+|||||||||+.
T Consensus       421 ~~~ll~~~~~~~~~~~~f~~v~~v~~~~d~~~~~~~~~~pg~g~~~dryfg~~  473 (473)
T KOG4203|consen  421 FLNLLAAPQGIHEVAYAFPKVKIVTSQIDKLLNEKRYVVPGLGNFGDRYFGTD  473 (473)
T ss_pred             HHHHHhhhhhhhHHHHhcccceeehhhhcccccccceECcccccchhhccCCC
Confidence            44558999999999999999999999999999999999999999999999973

>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]

Probab=97.15  E-value=0.00037  Score=52.00  Aligned_cols=47  Identities=34%  Similarity=0.641  Sum_probs=41.5

Q ss_pred             hhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            7 ALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         7 ~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      ++.++|++.+|-|.+.+.++||.++|+|+.|.+--.+         .||..||||.
T Consensus       221 ~IiL~sLF~tP~gak~i~~~fP~itiltseihpvaPn---------HFgqkYFGtd  267 (267)
T KOG1017|consen  221 NIILVSLFITPTGAKNITRKFPYITILTSEIHPVAPN---------HFGQKYFGTD  267 (267)
T ss_pred             cEEEEEeeecchhhHHHHHhCCeEEEEeecceecCcc---------cccchhcCCC
Confidence            4667889999999999999999999999999997765         4789999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	73
1upu_D	224	Structure Of The Uracil Phosphoribosyltransferase,		2e-11
1bd3_D	243	Structure Of The Apo Uracil Phosphoribosyltransfera		2e-11
2ehj_A	208	Structure Of Uracil Phosphoribosyl Transferase Leng		3e-07
1v9s_A	208	Crystal Structure Of Tt0130 Protein From Thermus Th		2e-05
1o5o_A	221	Crystal Structure Of Uracil Phosphoribosyltransfera		3e-05
3dmp_A	217	2.6 A Crystal Structure Of Uracil Phosphoribosyltra		4e-05
1i5e_A	209	Crystal Structure Of Bacillus Caldolyticus Uracil P		8e-05

>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant C128v, Bound To Product Uridine-1-Monophosphate (Ump) Length = 224

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 37/46 (80%)
Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           APQG+  V K +P++++VT+ +DI LN  + ++PG+G+FGDRYFGT
Sbjct: 178 APQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 223

>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2 Mutant C128v Length = 243

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 37/46 (80%)
Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           APQG+  V K +P++++VT+ +DI LN  + ++PG+G+FGDRYFGT
Sbjct: 197 APQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 242

>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase Length = 208

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 1   MDIFSSALCVSESH----QAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGD 56
           +D+   A C S        AP+G+  + K+ P +++ T+ ID GLNE   +IPG+G+ GD
Sbjct: 143 IDLLKKAGCSSIKVLVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGD 202
Query: 57  RYFGT 61
           + FGT
Sbjct: 203 KIFGT 207

>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus Thermophilus Hb8 Length = 208

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+G+  + K  P  ++V + ID  LN+   ++PG+G+ GDR +GT
Sbjct: 162 APEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGT 207

>pdb|1O5O|A Chain A, Crystal Structure Of Uracil Phosphoribosyltransferase (Tm0721) From Thermotoga Maritima At 2.30 A Resolution Length = 221

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+GV  V K +  +KI  + +D  LN+   +IPG+G+ GDR F T
Sbjct: 175 APEGVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRT 220

>pdb|3DMP|A Chain A, 2.6 A Crystal Structure Of Uracil Phosphoribosyltransferase From Burkholderia Pseudomallei Length = 217

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDD 63
           AP+GV V   + P +K+  + +D  L++   ++PG+G+ GDR FGT +
Sbjct: 170 APEGVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFGTKN 217

>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil Phosphoribosyltransferase With Bound Ump Length = 209

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+GV  V  + P + I  + +D  LN+   ++PG+G+ GDR FGT
Sbjct: 163 APEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGT 208

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	73
3dmp_A	217	Uracil phosphoribosyltransferase; structural genom	1e-20
2e55_A	208	Uracil phosphoribosyltransferase; structural genom	1e-20
1v9s_A	208	Uracil phosphoribosyltransferase; pyrimidine salva	5e-20
1bd3_D	243	Uprtase, uracil phosphoribosyltransferase; glycosy	6e-20
1xtt_A	216	Probable uracil phosphoribosyltransferase; tetrame	8e-20
2ehj_A	208	Uracil phosphoribosyltransferase; structural genom	2e-19
1o5o_A	221	Uracil phosphoribosyltransferase; TM0721, structur	8e-19
1i5e_A	209	Uracil phosphoribosyltransferase; salvage pathway;	9e-19

>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} Length = 217

 Score = 79.9 bits (197), Expect = 1e-20
 Identities = 18/48 (37%), Positives = 31/48 (64%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDD 63
           AP+GV V   + P +K+  + +D  L++   ++PG+G+ GDR FGT +
Sbjct: 170 APEGVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFGTKN 217

>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus} Length = 208

 Score = 79.6 bits (196), Expect = 1e-20
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62
           AP+G+  + + F  ++I    +D  LN+   +IPG+G+ GDR +   
Sbjct: 160 APEGLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAVS 206

>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1 Length = 208

 Score = 78.0 bits (192), Expect = 5e-20
 Identities = 18/46 (39%), Positives = 30/46 (65%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+G+  + K  P  ++V + ID  LN+   ++PG+G+ GDR +GT
Sbjct: 162 APEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGT 207

>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D* Length = 243

 Score = 78.5 bits (193), Expect = 6e-20
 Identities = 24/46 (52%), Positives = 37/46 (80%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           APQG+  V K +P++++VT+ +DI LN  + ++PG+G+FGDRYFGT
Sbjct: 197 APQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 242

>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A* Length = 216

 Score = 77.7 bits (191), Expect = 8e-20
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFG 60
           +  GV+ +   +P + + T  ID  LN    ++PG+G+ GDR FG
Sbjct: 172 SEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216

>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli} Length = 208

 Score = 76.5 bits (188), Expect = 2e-19
 Identities = 21/46 (45%), Positives = 33/46 (71%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+G+  + K+ P +++ T+ ID GLNE   +IPG+G+ GD+ FGT
Sbjct: 162 APEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGT 207

>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1 Length = 221

 Score = 75.3 bits (185), Expect = 8e-19
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+GV  V K +  +KI  + +D  LN+   +IPG+G+ GDR F T
Sbjct: 175 APEGVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRT 220

>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1 Length = 209

 Score = 74.9 bits (184), Expect = 9e-19
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+GV  V  + P + I  + +D  LN+   ++PG+G+ GDR FGT
Sbjct: 163 APEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGT 208

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	73
3dmp_A	217	Uracil phosphoribosyltransferase; structural genom	99.89
1xtt_A	216	Probable uracil phosphoribosyltransferase; tetrame	99.87
1v9s_A	208	Uracil phosphoribosyltransferase; pyrimidine salva	99.86
1o5o_A	221	Uracil phosphoribosyltransferase; TM0721, structur	99.86
2ehj_A	208	Uracil phosphoribosyltransferase; structural genom	99.86
1bd3_D	243	Uprtase, uracil phosphoribosyltransferase; glycosy	99.86
1i5e_A	209	Uracil phosphoribosyltransferase; salvage pathway;	99.79
2e55_A	208	Uracil phosphoribosyltransferase; structural genom	99.79

>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1

Probab=99.89  E-value=1.6e-24  Score=154.28  Aligned_cols=56  Identities=34%  Similarity=0.651  Sum_probs=50.8

Q ss_pred             hhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            7 ALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         7 ~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      .+.+++++|||+|++++.++||+++||||+||++|||++||+|||||||||+|||+
T Consensus       161 ~I~~~~~vaa~egl~~l~~~~P~v~i~ta~iD~~Lne~~yIvPGlGDaGDR~fgt~  216 (217)
T 3dmp_A          161 RLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFGTK  216 (217)
T ss_dssp             GEEEECSEECHHHHHHHHHHCTTCEEEESEECCEECTTSCEESSCSCHHHHHHC--
T ss_pred             eEEEEEEEeCHHHHHHHHHHCCCCEEEEEEecCCcCCCCCccCCCCCHHHhhcCCC
Confidence            34556679999999999999999999999999999999999999999999999986

>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*

Probab=99.87  E-value=2.9e-23  Score=147.52  Aligned_cols=53  Identities=30%  Similarity=0.569  Sum_probs=50.1

Q ss_pred             hcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccC
Q 035086            8 LCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFG   60 (73)
Q Consensus         8 l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fg   60 (73)
                      +.+++++|||+|++++.++||+++||||+||++|||++||+|||||||||+||
T Consensus       164 I~~~~~vaa~~gl~~l~~~~P~v~I~ta~iD~~Lne~~yIvPGlGDaGDR~fg  216 (216)
T 1xtt_A          164 IYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG  216 (216)
T ss_dssp             EEEECSEEEHHHHHHHHHHCTTSEEEESEEESEECTTSCEESSCSCHHHHHHC
T ss_pred             EEEEEEecCHHHHHHHHHHCCCcEEEEEEecCCcCCCCCccCCCCChHhhccC
Confidence            44566699999999999999999999999999999999999999999999997

>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1

Probab=99.86  E-value=9.6e-23  Score=143.98  Aligned_cols=56  Identities=32%  Similarity=0.629  Sum_probs=52.1

Q ss_pred             hhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            7 ALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         7 ~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      .+.+++++++|+|++++.++||+++|||++||++|||++||+||+||||||||||+
T Consensus       153 ~I~~~~lv~~~~g~~~l~~~~p~v~I~t~~iD~~lne~~yIvPGlGDaGDR~fgt~  208 (208)
T 1v9s_A          153 GVKLMAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK  208 (208)
T ss_dssp             SCEEEEEEECHHHHHHHHHHCTTCEEEEEEECSEECTTSCEESSCSCHHHHHHTCC
T ss_pred             EEEEEEEEeCHHHHHHHHHHCCCcEEEEEeecCCCCCCceecCCCCcHHHhccCCC
Confidence            34556679999999999999999999999999999999999999999999999984

>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1

Probab=99.86  E-value=1.1e-22  Score=145.10  Aligned_cols=56  Identities=36%  Similarity=0.603  Sum_probs=52.0

Q ss_pred             hhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            7 ALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         7 ~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      .+.+++.+++|+|++++.++||+++|||++||++|||++||+|||||||||||||+
T Consensus       166 ~I~~~~lv~~~~g~~~l~~~~p~v~I~t~~ID~~Lne~~yIvPGlGDaGDR~fGt~  221 (221)
T 1o5o_A          166 KITLVALIAAPEGVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRTK  221 (221)
T ss_dssp             EEEEECSEECHHHHHHHHHHCTTCEEEESEECSEECTTSCEESSCSCHHHHHHTCC
T ss_pred             EEEEEEEEeCHHHHHHHHHHCCCcEEEEEeccCCCCCCceecCCCCcHHHhccCCC
Confidence            34456679999999999999999999999999999999999999999999999984

>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}

Probab=99.86  E-value=1.1e-22  Score=143.72  Aligned_cols=56  Identities=39%  Similarity=0.684  Sum_probs=52.0

Q ss_pred             hhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            7 ALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         7 ~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      .+.+++++++|+|++++.++||+++|||++||++||+++||+||+||||||||||+
T Consensus       153 ~I~~~~lv~~p~g~~~l~~~~p~v~I~t~~iD~~lne~~yIvPGlGDaGDR~fgt~  208 (208)
T 2ehj_A          153 SIKVLVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK  208 (208)
T ss_dssp             EEEEEEEEECHHHHHHHHHHCTTSEEEESCBCSEECTTSCEESCCSCHHHHHHTCC
T ss_pred             EEEEEEEEeCHHHHHHHHHHCCCcEEEEEecCCCCCCCceecCCCCcHHHhhcCCC
Confidence            34456679999999999999999999999999999999999999999999999984

>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*

Probab=99.86  E-value=1.7e-22  Score=145.88  Aligned_cols=57  Identities=42%  Similarity=0.880  Sum_probs=52.8

Q ss_pred             hhhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            6 SALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         6 ~~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      +.+.+++++++|+|++++.++||+++|||++||++||+++||+|||||||||||||+
T Consensus       187 ~~I~~~~lvaap~g~~~l~~~~p~v~I~ta~ID~~Lne~~yIvPGlGDaGDR~fGt~  243 (243)
T 1bd3_D          187 ERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGTM  243 (243)
T ss_dssp             GGEEEEEEEECHHHHHHHHHHCTTSEEEEEEECSEECTTCCEESCCSCHHHHHHTCC
T ss_pred             ceEEEEEEEeCHHHHHHHHHHCCCCEEEEEEecCCcCCCceecCCCCcHHHhhcCCC
Confidence            345566779999999999999999999999999999999999999999999999984

>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1

Probab=99.79  E-value=3e-20  Score=129.88  Aligned_cols=55  Identities=35%  Similarity=0.598  Sum_probs=51.4

Q ss_pred             hcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            8 LCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         8 l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      +.+++++++++|++++.++||++.|||++||++||+++||+||+||+|||+|||+
T Consensus       155 I~~~~lv~~~~g~~~l~~~~p~~~I~t~~id~~l~~~~~i~Pglgdagdr~fgt~  209 (209)
T 1i5e_A          155 IKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK  209 (209)
T ss_dssp             EEEECSEECHHHHHHHHHHCTTCEEEESEECCEECTTCCEESSCSCHHHHHHSCC
T ss_pred             EEEEEEEECHHHHHHHHHhCcCcEEEEEEeCCCCCCCceEccCCchHHHHhcCCC
Confidence            4455669999999999999999999999999999999999999999999999984

>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}

Probab=99.79  E-value=5.1e-20  Score=130.03  Aligned_cols=56  Identities=27%  Similarity=0.570  Sum_probs=52.1

Q ss_pred             hhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            7 ALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         7 ~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      .+.+++++++|+|++++.++||+++|||++||++||+++||+||+||+|||+|||+
T Consensus       151 ~I~~~~lv~~~~g~~~l~~~~p~v~I~t~~iD~~l~e~~~I~PglgdagdR~fgt~  206 (208)
T 2e55_A          151 KVKSVHAIAAPEGLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAVS  206 (208)
T ss_dssp             EEEEEEEEECHHHHHHHHHHCTTSEEEEEEECSEECTTSCEESSCSSHHHHHHSCC
T ss_pred             EEEEEEEEECHHHHHHHHHHCCCcEEEEEeecCCCCCCceeccCccHHHHHhcCCC
Confidence            34456669999999999999999999999999999999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	73
d1i5ea_	208	c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldoly	7e-17
d1bd3a_	224	c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondi	9e-17
d1v9sa1	208	c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus the	9e-17
d1o5oa_	210	c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga marit	1e-16
d1xtta1	215	c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus	2e-16

>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]} Length = 208

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Bacillus caldolyticus [TaxId: 1394]

 Score = 68.8 bits (168), Expect = 7e-17
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+GV  V  + P + I  + +D  LN+   ++PG+G+ GDR FGT
Sbjct: 162 APEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGT 207

>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]} Length = 224

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Toxoplasma gondii [TaxId: 5811]

 Score = 68.8 bits (168), Expect = 9e-17
 Identities = 24/47 (51%), Positives = 37/47 (78%)

Query: 15  QAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
            APQG+  V K +P++++VT+ +DI LN  + ++PG+G+FGDRYFGT
Sbjct: 177 AAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 223

>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]} Length = 208

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Thermus thermophilus [TaxId: 274]

 Score = 68.4 bits (167), Expect = 9e-17
 Identities = 18/46 (39%), Positives = 30/46 (65%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+G+  + K  P  ++V + ID  LN+   ++PG+G+ GDR +GT
Sbjct: 162 APEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGT 207

>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]} Length = 210

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.1 bits (166), Expect = 1e-16
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 15  QAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
            AP+GV  V K +  +KI  + +D  LN+   +IPG+G+ GDR F T
Sbjct: 163 AAPEGVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRT 209

>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus solfataricus [TaxId: 2287]} Length = 215

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 67.7 bits (165), Expect = 2e-16
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 15  QAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFG 60
            +  GV+ +   +P + + T  ID  LN    ++PG+G+ GDR FG
Sbjct: 170 SSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 215

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	73
d1v9sa1	208	Uracil PRTase, Upp {Thermus thermophilus [TaxId: 2	99.93
d1i5ea_	208	Uracil PRTase, Upp {Bacillus caldolyticus [TaxId:	99.92
d1bd3a_	224	Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811	99.92
d1o5oa_	210	Uracil PRTase, Upp {Thermotoga maritima [TaxId: 23	99.91
d1xtta1	215	Uracil PRTase, Upp {Sulfolobus solfataricus [TaxId	99.9

>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=4.9e-27  Score=164.09  Aligned_cols=55  Identities=33%  Similarity=0.637  Sum_probs=52.1

Q ss_pred             hcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            8 LCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         8 l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      +-++|++|||+||+++.++||+++||||+||++|||++||+|||||||||||||+
T Consensus       154 I~~v~~ias~~Gi~~v~~~~P~v~I~ta~iD~~Lne~~yIvPGlGDaGDR~fgT~  208 (208)
T d1v9sa1         154 VKLMAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK  208 (208)
T ss_dssp             CEEEEEEECHHHHHHHHHHCTTCEEEEEEECSEECTTSCEESSCSCHHHHHHTCC
T ss_pred             eEEEEEEecHHHHHHHHHHCCCCEEEEEEecCCcCCCCeECCCCCChHHhccCCC
Confidence            4456779999999999999999999999999999999999999999999999995

>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Bacillus caldolyticus [TaxId: 1394]

Probab=99.92  E-value=1.2e-26  Score=162.55  Aligned_cols=55  Identities=35%  Similarity=0.598  Sum_probs=52.1

Q ss_pred             hcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            8 LCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         8 l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      +.++|+||||+||+++.++||+++||||+||++||+++||+|||||||||||||+
T Consensus       154 I~~v~~iaa~~Gi~~i~~~~P~v~I~t~~iD~~Ln~~~yIvPGlGDaGDR~fGT~  208 (208)
T d1i5ea_         154 IKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK  208 (208)
T ss_dssp             EEEECSEECHHHHHHHHHHCTTCEEEESEECCEECTTCCEESSCSCHHHHHHSCC
T ss_pred             EEEEEEeecHHHHHHHHHHCcCCEEEEEEeCCCcCCCCcCCCCCCCHHHhccCCC
Confidence            4556779999999999999999999999999999999999999999999999995

>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.92  E-value=3e-26  Score=162.09  Aligned_cols=54  Identities=44%  Similarity=0.949  Sum_probs=51.2

Q ss_pred             hcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCC
Q 035086            8 LCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT   61 (73)
Q Consensus         8 l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt   61 (73)
                      +.++|+||||+|++++.++||+++||||+||++||+++||+|||||||||||||
T Consensus       170 I~~v~~iaa~~Gi~~l~~~~P~v~i~ta~ID~~Ln~~~yIvPGlGDaGDR~fGT  223 (224)
T d1bd3a_         170 IIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT  223 (224)
T ss_dssp             EEEEEEEECHHHHHHHHHHCTTCEEEEEEECSEECTTSCEESCCSCHHHHHHTC
T ss_pred             EEEEEEEecHHHHHHHHHHCcCCEEEEEEECcccCCCCccCCCCCcHHHhhcCC
Confidence            445677999999999999999999999999999999999999999999999998

>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=7.6e-26  Score=158.19  Aligned_cols=55  Identities=36%  Similarity=0.616  Sum_probs=52.3

Q ss_pred             hcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086            8 LCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD   62 (73)
Q Consensus         8 l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~   62 (73)
                      +.++|+||||+|++++.++||+++||||+||++|||++||+||+||||||||||+
T Consensus       156 I~~v~~ias~~Gl~~i~~~~P~v~I~ta~iD~~Lne~~yIvPGlGDaGDR~fgTk  210 (210)
T d1o5oa_         156 ITLVALIAAPEGVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRTK  210 (210)
T ss_dssp             EEEECSEECHHHHHHHHHHCTTCEEEESEECSEECTTSCEESSCSCHHHHHHTCC
T ss_pred             EEEEEEEEchHHHHHHHHHCCCCEEEEEEecCCcCCCCCCCCCCCCHHHhhcCCC
Confidence            4566779999999999999999999999999999999999999999999999995

>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.90  E-value=2.7e-25  Score=155.86  Aligned_cols=53  Identities=30%  Similarity=0.569  Sum_probs=50.3

Q ss_pred             hcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccC
Q 035086            8 LCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFG   60 (73)
Q Consensus         8 l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fg   60 (73)
                      +.++|++|||+||++++++||+++||||+||++|||++||+||+|||||||||
T Consensus       163 I~~~~~ias~~Gi~~l~~~~P~v~i~ta~iD~~Ln~~gyIvPGlGDaGDR~fG  215 (215)
T d1xtta1         163 IYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG  215 (215)
T ss_dssp             EEEECSEEEHHHHHHHHHHCTTSEEEESEEESEECTTSCEESSCSCHHHHHHC
T ss_pred             EEEEEEEecHHHHHHHHHHCcCCEEEEEEeCCCcCCCCcCcCCCCChhhhhcC
Confidence            44567799999999999999999999999999999999999999999999998