Citrus Sinensis ID: 035373

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MAINQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKRSIQ
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccEEEEEccHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MAINQLENLVESIKSKVRALKkkknkpyikmdksssVKVEIRSRKAKKLIDKTLQvadrpgkrsiq
Flexible Loop (DISEMBL)
mainqlenLVESIKSKVralkkkknkpyikmdksssvkveirsrkakklidktlqvadrpgkrsiq
Low Complexity Region (SEG)
MAINQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKRSIQ
Disordered region (IsUnstruct)
******************************************************************
Disordered Region (DISOPRED)
*********V*************************************KLIDKTLQV**********
Disordered Region (DISEMBL)
MAINQLENLVESIKSKVRALKKKKNKPYI************RSRKAKKLIDKTLQ***********
Disordered Region (DISPRO)
MAINQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADR*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAxxxxxxxxxxxxxxxxxxxxxxxxPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKRSIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
225429205	64	PREDICTED: uncharacterized protein LOC10	0.954	0.984	0.892	2e-20
224105751	65	predicted protein [Populus trichocarpa]	0.969	0.984	0.892	3e-20
224060879	64	predicted protein [Populus trichocarpa]	0.954	0.984	0.876	4e-20
255562224	64	conserved hypothetical protein [Ricinus	0.924	0.953	0.887	9e-20
297834878	61	hypothetical protein ARALYDRAFT_479483 [	0.878	0.950	0.745	6e-14
307135953	64	hypothetical protein [Cucumis melo subsp	0.924	0.953	0.838	1e-13
15230915	64	uncharacterized protein [Arabidopsis tha	0.909	0.937	0.704	1e-13
449465089	64	PREDICTED: uncharacterized protein LOC10	0.924	0.953	0.822	2e-13
357480709	71	hypothetical protein MTR_5g005330 [Medic	0.833	0.774	0.789	1e-12
356495813	135	PREDICTED: 40S ribosomal protein S20-1-l	0.636	0.311	0.837	6e-09

>gi|225429205|ref|XP_002276348.1| PREDICTED: uncharacterized protein LOC100258330 [Vitis vinifera]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/65 (89%), Positives = 61/65 (93%), Gaps = 2/65 (3%)

Query: 1  MAINQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRP 60
          MAI QLENLVESIKSKVRALKK K KPYIKMDKSSSVKVEIRSRKAKKLIDKT++ ADRP
Sbjct: 1  MAI-QLENLVESIKSKVRALKKSK-KPYIKMDKSSSVKVEIRSRKAKKLIDKTMRAADRP 58

Query: 61 GKRSI 65
          GKR+I
Sbjct: 59 GKRTI 63

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105751|ref|XP_002313920.1| predicted protein [Populus trichocarpa] gi|222850328|gb|EEE87875.1| predicted protein [Populus trichocarpa]

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/65 (89%), Positives = 62/65 (95%), Gaps = 1/65 (1%)

Query: 1  MAINQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRP 60
          MAI QLENLV+SIKSKVRALKKK  KPYIKMDKS+SVKVEIRSRKA+KLIDKTLQVADRP
Sbjct: 1  MAI-QLENLVQSIKSKVRALKKKSKKPYIKMDKSASVKVEIRSRKARKLIDKTLQVADRP 59

Query: 61 GKRSI 65
          GKR+I
Sbjct: 60 GKRTI 64

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060879|ref|XP_002300282.1| predicted protein [Populus trichocarpa] gi|222847540|gb|EEE85087.1| predicted protein [Populus trichocarpa]

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/65 (87%), Positives = 61/65 (93%), Gaps = 2/65 (3%)

Query: 1  MAINQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRP 60
          MAI QLENLV+SIKSKVRALKK K KPYIKMDKS+SV+VEIRSRKA+KLIDKTLQVADRP
Sbjct: 1  MAI-QLENLVQSIKSKVRALKKSK-KPYIKMDKSASVRVEIRSRKARKLIDKTLQVADRP 58

Query: 61 GKRSI 65
          GKR I
Sbjct: 59 GKRVI 63

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562224|ref|XP_002522120.1| conserved hypothetical protein [Ricinus communis] gi|223538719|gb|EEF40320.1| conserved hypothetical protein [Ricinus communis]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 59/62 (95%), Gaps = 1/62 (1%)

Query: 4  NQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKR 63
          NQLENLV+SIKSKVR+LKK K KPYIKMDKSSSVKVEIRSRKAK+LIDKTL+ ADRPGKR
Sbjct: 3  NQLENLVQSIKSKVRSLKKSK-KPYIKMDKSSSVKVEIRSRKAKQLIDKTLKKADRPGKR 61

Query: 64 SI 65
          SI
Sbjct: 62 SI 63

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834878|ref|XP_002885321.1| hypothetical protein ARALYDRAFT_479483 [Arabidopsis lyrata subsp. lyrata] gi|297331161|gb|EFH61580.1| hypothetical protein ARALYDRAFT_479483 [Arabidopsis lyrata subsp. lyrata]

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 52/59 (88%), Gaps = 1/59 (1%)

Query: 5  QLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKR 63
          QLE+L+E+IKSKV  L+KKK KPYIKMDKSSSV+V IR +K + LIDKTL+VADRPGKR
Sbjct: 4  QLESLMETIKSKVSLLRKKK-KPYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRPGKR 61

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135953|gb|ADN33813.1| hypothetical protein [Cucumis melo subsp. melo]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/62 (83%), Positives = 56/62 (90%), Gaps = 1/62 (1%)

Query: 4  NQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKR 63
          NQL NLVESIKSKV+A  KK  KPYIKMDKSSSVKVEIRSRKA+ LIDKTL+VADRPGKR
Sbjct: 3  NQLGNLVESIKSKVKA-LKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGKR 61

Query: 64 SI 65
          +I
Sbjct: 62 TI 63

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230915|ref|NP_188600.1| uncharacterized protein [Arabidopsis thaliana] gi|9294431|dbj|BAB02551.1| unnamed protein product [Arabidopsis thaliana] gi|30102564|gb|AAP21200.1| At3g19660 [Arabidopsis thaliana] gi|110743915|dbj|BAE99791.1| hypothetical protein [Arabidopsis thaliana] gi|332642751|gb|AEE76272.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 53/61 (86%), Gaps = 1/61 (1%)

Query: 5  QLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKRS 64
          QLE+L+E+IKSKV  L+KKK K YIKMDKSSSV+V IR +K + LIDKTL+VADRPGKR+
Sbjct: 4  QLESLMETIKSKVSLLRKKK-KTYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRPGKRT 62

Query: 65 I 65
          +
Sbjct: 63 L 63

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465089|ref|XP_004150261.1| PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus] gi|449484378|ref|XP_004156865.1| PREDICTED: uncharacterized LOC101219359 [Cucumis sativus]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 56/62 (90%), Gaps = 1/62 (1%)

Query: 4  NQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKR 63
          NQL NLVESIKSKV+A  KK  KPYIKMDKSSSVKVEIRSRKA+ LIDKT++VADRPGKR
Sbjct: 3  NQLGNLVESIKSKVKA-LKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGKR 61

Query: 64 SI 65
          +I
Sbjct: 62 TI 63

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480709|ref|XP_003610640.1| hypothetical protein MTR_5g005330 [Medicago truncatula] gi|355511975|gb|AES93598.1| hypothetical protein MTR_5g005330 [Medicago truncatula]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/57 (78%), Positives = 51/57 (89%), Gaps = 2/57 (3%)

Query: 4  NQLENLVESIKSKVRA-LKKKKNK-PYIKMDKSSSVKVEIRSRKAKKLIDKTLQVAD 58
          NQL NLVESIKSKV++ LK KK K PYIKMDKS+SVKVEIRSRKA+KLI+KTL+ AD
Sbjct: 3  NQLGNLVESIKSKVKSTLKMKKGKKPYIKMDKSASVKVEIRSRKARKLIEKTLKAAD 59

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495813|ref|XP_003516766.1| PREDICTED: 40S ribosomal protein S20-1-like [Glycine max]

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 39/43 (90%), Gaps = 1/43 (2%)

Query: 5  QLENLVESIKSKVRALKKKKNK-PYIKMDKSSSVKVEIRSRKA 46
          QL NLVESIKSKVR+LK KK K PY+KMDKS+SVKVEIRSRKA
Sbjct: 8  QLGNLVESIKSKVRSLKPKKGKKPYMKMDKSASVKVEIRSRKA 50

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
TAIR|locus:2091156	64	AT3G19660 "AT3G19660" [Arabido	0.909	0.937	0.704	1.4e-16

TAIR|locus:2091156 AT3G19660 "AT3G19660" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 43/61 (70%), Positives = 53/61 (86%)

Query:     5 QLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKRS 64
             QLE+L+E+IKSKV  L+KKK K YIKMDKSSSV+V IR +K + LIDKTL+VADRPGKR+
Sbjct:     4 QLESLMETIKSKVSLLRKKK-KTYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRPGKRT 62

Query:    65 I 65
             +
Sbjct:    63 L 63


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.125   0.309    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       66        66   0.00091  102 3  10 23  0.44    28
                                                     29  0.48    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  393 (42 KB)
  Total size of DFA:  74 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.51u 0.12s 15.63t   Elapsed:  00:00:01
  Total cpu time:  15.51u 0.12s 15.63t   Elapsed:  00:00:01
  Start:  Thu May  9 14:07:48 2013   End:  Thu May  9 14:07:49 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038625001 SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence; (64 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00