Citrus Sinensis ID: 035508

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
LNTTAVSSNRIHPPSSSNQFIIIANTSSIIRHHRRRDRISLNRNRNMHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEEILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEcccHHHHccccccccccccccccHHHHHHHHHcccccEEEEEcccccccccccccEEEEcccccHHHHHHHHHHHHHccccccccccEEEEEcccccccccccHHHHHHcccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccEEcccccccccccccccHHHHHHHHcccccccccccccccccccHHHccccccccccccccHHHHHHHHHHcccccccEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHcccccEEEEEcccHcccccccccEEEEEccHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccEEEEHHHccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccHHEEEEEccccccccccccccHHHHHHHHcHHHccccccccccccccccccccccccccccccccccccccccHHcccccEEEEEEEccccccccccEcc
Coil and Loop (DISEMBL)
lnttavssnrihppsssnqfiIIANTSSIIRHHRRRDRISLNRNRNMHMEARKYVWEGAIPlqihlhesevttlpppppalilaprigylPLLVGLikpyfgsslppgvdtiwfeykglplkwytptgvLFDLlcaeperpwnltvhfrgypvhvlipcegedsVKWSFINSLKEAAYIINGNcknvmnmsqSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKlnsssksqqgtgetdfagqvktgripVRLYVWSvsedfddledapdidcwdkisfinrpvevrteegkcfTLRDAIKTLlpeyftdkplfndespkledeemnlssedagsnkntEVEEILYEHVTRNAEIKLVRIqgiepkleipfswv
Flexible Loop (DISEMBL)
lnttavssnrihppsssnqfiiiantssiirhhrrrdrislnrnrnMHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLnsssksqqgtgetdfagqvktgriPVRLYVWSVSEDFDDLedapdidcwdkisfinrpvevrteegkcftlRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNlssedagsnkntEVEEILYEHvtrnaeiklvriqgiepkleipfswv
Low Complexity Region (SEG)
LNTTAVSSNRIHPPSSSNQFIIIANTssiirhhrrrdrislnrnrnMHMEARKYVWEGAIPLQIHLHESEVTTlpppppalilapRIGYLPLLVGLIKPYFGSSLPPGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEEILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV
Disordered region (IsUnstruct)
*******************FIIIANTSSIIRHHRRRDRISLNRNRNMHMEARKYVWEGAIPLQIHLH*************LILAPRIGYLPLLVGLIKPYFGSSLPPGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVK****************AGQVKTGRIPVRLYVWSVS*************CWDKISFINRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPL****************************EEILYEHVTRNAEIKLVRIQGIEPKLEIPF***
Disordered Region (DISOPRED)
*************PSSSNQFIIIANT****************************VWEGAIPLQIHLHESE*TTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKN**********ELWRSVMNGNLEAYLRVSSKLKL*******************************TGRIPVRLYVWSVSED***********CWDKISFINRPV*****EGKCFTLRDAIKTLLPEYFTDKP**********************************EHVTRNAEIKLVRIQGIEPKLEIPFSWV
Disordered Region (DISEMBL)
*************PSSSNQFIIIANTSSIIRHHRRRDRISLNRNRNMHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLN***********TDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPK****************KNTEVEEILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV
Disordered Region (DISPRO)
***TAVSSNRIHPPSSSNQFIIIANTSSIIRHHRRRDRISLNRNRNMHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLI***************************QVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPVEVRTEEGKCFTLRDAIKTLLPEYFTD***********************************YEHVTRNAEIKLVRIQGIEPKLEIPFSWV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LNTTAVSSNRIHPPSSSNQFIIIANTSSIIRHHRRRDRISLNRNRNMHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEEILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
Q9FFI2	337	Autophagy protein 5 OS=Ar	yes	no	0.828	0.931	0.673	1e-128
A2X052	380	Autophagy protein 5 OS=Or	N/A	no	0.854	0.852	0.568	6e-99
Q6ZGL4	380	Autophagy protein 5 OS=Or	yes	no	0.854	0.852	0.565	6e-98
Q5B2Q6	334	Autophagy protein 5 OS=Em	yes	no	0.430	0.488	0.382	3e-26
A1DMA1	326	Autophagy protein 5 OS=Ne	N/A	no	0.437	0.509	0.368	1e-25
Q2UBM1	322	Autophagy protein 5 OS=As	yes	no	0.437	0.515	0.371	2e-25
Q9H1Y0	275	Autophagy protein 5 OS=Ho	yes	no	0.641	0.883	0.273	4e-25
Q99J83	275	Autophagy protein 5 OS=Mu	yes	no	0.424	0.585	0.359	4e-25
A1CE93	321	Autophagy protein 5 OS=As	N/A	no	0.437	0.517	0.363	5e-25
Q4WNA5	326	Autophagy protein 5 OS=Ne	yes	no	0.469	0.546	0.351	8e-25

>sp|Q9FFI2|ATG5_ARATH Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/334 (67%), Positives = 263/334 (78%), Gaps = 20/334 (5%)

Query: 47  MHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLP 106
           M  EA KYVWEGAIPLQIHLH+S+V + P PPPAL+LAPRIGYLPLL+ LIKPYF  SLP
Sbjct: 1   MAKEAVKYVWEGAIPLQIHLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKDSLP 60

Query: 107 PGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVK 166
           PG D+IWF+YKG PLKWY PTGVLFDLLCAEPERPWNLT+HFRGYP ++LIPCEGEDSVK
Sbjct: 61  PGEDSIWFDYKGFPLKWYIPTGVLFDLLCAEPERPWNLTIHFRGYPCNILIPCEGEDSVK 120

Query: 167 WSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDY 226
           W+F+NSLKEA YIINGNCKNVMNMSQSDQ +LW SVMNG+L+AY R+S KLK+ TVED++
Sbjct: 121 WNFVNSLKEAQYIINGNCKNVMNMSQSDQEDLWTSVMNGDLDAYTRLSPKLKMGTVEDEF 180

Query: 227 TVKLN-SSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFI 285
           + K + SS +SQQ   ET+ AGQVKT RIPVRLYV S+++DF++LED P+ID WD IS++
Sbjct: 181 SRKTSLSSPQSQQVVPETEVAGQVKTARIPVRLYVRSLNKDFENLEDVPEIDTWDDISYL 240

Query: 286 NRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTE 345
           NRPVE   EEGKCFTLRDAIK+LLPE+  D+   + E   ++D E    S + G      
Sbjct: 241 NRPVEFLKEEGKCFTLRDAIKSLLPEFMGDRAQTSGEERSIDDTEEADGSREMG------ 294

Query: 346 VEEILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV 379
                        EIKLVRIQGIE KLEIPFSWV
Sbjct: 295 -------------EIKLVRIQGIEMKLEIPFSWV 315

Required for autophagy. Conjugation to ATG12 is essential for plant nutrient recycling.
Arabidopsis thaliana (taxid: 3702)

>sp|A2X052|ATG5_ORYSI Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2

 Score =  361 bits (926), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 196/345 (56%), Positives = 247/345 (71%), Gaps = 21/345 (6%)

Query: 50  EARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPGV 109
           EA + VW GA+PLQ+HLH+++VTTLPPPPP L L PRIGYLPLLV +IK +F S+LPPG+
Sbjct: 14  EAARRVWGGAVPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVPIIKAHFSSTLPPGI 73

Query: 110 DTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSF 169
           DT+WFEYKGLPLKWY P GVL+DLLCA+PERPWNLTVHFRGYP  +L PC+GEDSVKWS+
Sbjct: 74  DTVWFEYKGLPLKWYIPIGVLYDLLCADPERPWNLTVHFRGYPSEILTPCDGEDSVKWSY 133

Query: 170 INSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVK 229
           +NSLKEAA+II GN KNVMNMSQ+DQ  LW+SVM GNL+ Y+ +S++LKL   E+D  V+
Sbjct: 134 MNSLKEAAFIITGNSKNVMNMSQADQGALWQSVMKGNLDGYMNISTRLKLGPFEEDCLVR 193

Query: 230 LNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPV 289
             SS + QQG+ E +  G  K  R+PVRLYV SV ED  DLEDA  +  W+ IS+INRP 
Sbjct: 194 -TSSVEGQQGSDEPESPGSGKPCRVPVRLYVRSVQEDLYDLEDALPVGDWESISYINRPF 252

Query: 290 EVRTEEGKCF-TLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEE 348
           EVR EEG+ + TL  A+KTLLPE+F+ K      S   +D E    + D+  N +++V  
Sbjct: 253 EVRREEGRSYITLEHALKTLLPEFFSSK-----ASRIPDDSETAPQAPDSAPNDDSDVTP 307

Query: 349 ILYEHVTRNAE--------------IKLVRIQGIEPKLEIPFSWV 379
              E +  +A               +KLVR+QGIE  ++IPF WV
Sbjct: 308 RSCEKLESSASSSPQEANVANKGKIVKLVRVQGIEVDMDIPFLWV 352

Required for autophagy. Conjugation to ATG12 is essential for plant nutrient recycling.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q6ZGL4|ATG5_ORYSJ Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1

 Score =  357 bits (917), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 195/345 (56%), Positives = 246/345 (71%), Gaps = 21/345 (6%)

Query: 50  EARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPGV 109
           EA + VW GA+PLQ+HLH+++VTTLPPPPP L L PRIGYLPLLV +IK +F S+LPPG+
Sbjct: 14  EAARRVWGGAVPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVPIIKAHFSSTLPPGI 73

Query: 110 DTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSF 169
           DT+WFEYKGLPLKWY P GVL+DLLCA+PERPWNLTVHFRGYP  +L  C+GEDSVKWS+
Sbjct: 74  DTVWFEYKGLPLKWYIPIGVLYDLLCADPERPWNLTVHFRGYPSEILTLCDGEDSVKWSY 133

Query: 170 INSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVK 229
           +NSLKEAA+II GN KNVMNMSQ+DQ  LW+SVM GNL+ Y+ +S++LKL   E+D  V+
Sbjct: 134 MNSLKEAAFIITGNSKNVMNMSQADQGALWQSVMKGNLDGYMNISTRLKLGPFEEDCLVR 193

Query: 230 LNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPV 289
             SS + QQG+ E +  G  K  R+PVRLYV SV ED  DLEDA  +  W+ IS+INRP 
Sbjct: 194 -TSSVEGQQGSDEPESPGSGKPCRVPVRLYVRSVQEDLYDLEDALPVGDWESISYINRPF 252

Query: 290 EVRTEEGKCF-TLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEE 348
           EVR EEG+ + TL  A+KTLLPE+F+ K      S   +D E    + D+  N +++V  
Sbjct: 253 EVRREEGRSYITLEHALKTLLPEFFSSK-----ASRIPDDSETAPQAPDSAPNDDSDVTP 307

Query: 349 ILYEHVTRNAE--------------IKLVRIQGIEPKLEIPFSWV 379
              E +  +A               +KLVR+QGIE  ++IPF WV
Sbjct: 308 RSCEKLESSASSSPQEANVANKGKIVKLVRVQGIEVDMDIPFLWV 352

Required for autophagy. Conjugation to ATG12 is essential for plant nutrient recycling.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5B2Q6|ATG5_EMENI Autophagy protein 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg5 PE=3 SV=2

 Score =  119 bits (299), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 105/188 (55%), Gaps = 25/188 (13%)

Query: 52  RKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPGVDT 111
           +K VWEG IPL+I L  SE  T     P LI  PRI YLP L+  +K +F SSL   +D 
Sbjct: 10  QKSVWEGQIPLKIVLAPSESRTYDQTDPYLISYPRISYLPSLLPRLKAFFSSSL---IDP 66

Query: 112 I-------WFEYKGLPLKWYTPTGVLFDLLC-AEP-------------ERPWNLTVHFRG 150
                   WF ++G+PLKW+ P G+L+DL   AEP             + PW L VHF  
Sbjct: 67  TASQPHDGWFSFEGVPLKWHYPVGLLYDLYAGAEPATKSSETEALDDEQLPWRLVVHFGD 126

Query: 151 YPVHVLIPCEGEDSVKW-SFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEA 209
           +P   L+  + + +V   +FINS+KEA ++ NG  K +M +S+ D   LW++V + +L +
Sbjct: 127 WPDAELVRLDAQGTVMHDAFINSVKEADFVRNGTAKGIMTLSKDDSSGLWKAVQDVDLPS 186

Query: 210 YLRVSSKL 217
           + R+ + L
Sbjct: 187 FQRIMNIL 194

Involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. May be required for atgH/atg8 association to the vesicle membranes.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|A1DMA1|ATG5_NEOFI Autophagy protein 5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=atg5 PE=3 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 104/190 (54%), Gaps = 24/190 (12%)

Query: 52  RKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSL-PPGVD 110
           ++ VW+G +PLQI L  SE  T     P LI  PRI YLP L+  ++ +F SSL  P   
Sbjct: 17  QRAVWDGKLPLQITLASSESRTYDQTDPYLIACPRISYLPSLLPRLRAFFSSSLIEPNSQ 76

Query: 111 T--IWFEYKGLPLKWYTPTGVLFDLLC-AEPER-------------------PWNLTVHF 148
               WF ++G+PLKW+ P G+L+DL   A+P                     PW LTVHF
Sbjct: 77  PHEGWFSFEGVPLKWHLPVGLLYDLYAGADPASKGTRIDETDHPSSSLSDTLPWRLTVHF 136

Query: 149 RGYPVHVLIPCEGEDSVKW-SFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNL 207
             +P   L+  + +  V   +FINS+KEA ++ NG  K +M +S+ D   LW++V + +L
Sbjct: 137 SDWPDEELVRLDADGMVMHDAFINSVKEADFLRNGTAKGIMTLSKEDSAGLWQAVQDVDL 196

Query: 208 EAYLRVSSKL 217
            ++ R+S+ L
Sbjct: 197 PSFQRISNIL 206

Involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. May be required for ATG8 association to the vesicle membranes.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|Q2UBM1|ATG5_ASPOR Autophagy protein 5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=atg5 PE=3 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 101/191 (52%), Gaps = 25/191 (13%)

Query: 52  RKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSL---PPG 108
           +K VW+G +PLQI L  SE        P LI  PRI YLP L+  ++ +F SSL      
Sbjct: 11  QKAVWDGRLPLQIRLAPSESRIYDQTDPYLISYPRISYLPSLLPRLRAFFASSLIDPSSN 70

Query: 109 VDTIWFEYKGLPLKWYTPTGVLFDLLC-AEPER--------------------PWNLTVH 147
               WF ++G+PLKW+ P G+L+DL   A+P                      PW L VH
Sbjct: 71  AHDGWFSFEGVPLKWHLPIGLLYDLYAGADPASKGTAESEDAGWDIDDQDNPLPWRLVVH 130

Query: 148 FRGYPVHVLIPCEGEDSV-KWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGN 206
           F  +P   L+  + E  V   +FINS+KEA ++ NG  K +M++S+ D   LW+SV N  
Sbjct: 131 FSDWPDEELVRLDAEGMVMNDAFINSVKEADFLRNGTAKGIMSLSKEDSSGLWKSVQNVE 190

Query: 207 LEAYLRVSSKL 217
           L ++ R+S+ L
Sbjct: 191 LSSFQRISNIL 201

Involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. May be required for atg8 association to the vesicle membranes.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q9H1Y0|ATG5_HUMAN Autophagy protein 5 OS=Homo sapiens GN=ATG5 PE=1 SV=2

 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 135/326 (41%), Gaps = 83/326 (25%)

Query: 55  VWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSL-PPGVDTIW 113
           VW G IP    L++ E+T     P  L+L PR+ YL L+   +K +F   +    +  IW
Sbjct: 11  VWFGRIPTCFTLYQDEITEREAEPYYLLL-PRVSYLTLVTDKVKKHFQKVMRQEDISEIW 69

Query: 114 FEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSL 173
           FEY+G PLKW+ P G+LFDLL +    PWN+TVHF+ +P   L+ C  +D+++  F++ +
Sbjct: 70  FEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCM 129

Query: 174 KEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLNSS 233
           KEA   +    + +  M + D  +LW  + N   + +  ++ KL       +Y  + N  
Sbjct: 130 KEAD-ALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLM------EYPAEENGF 182

Query: 234 SKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPVEVRT 293
                               IP R+Y  +    F              I  + RPV    
Sbjct: 183 R------------------YIPFRIYQTTTERPF--------------IQKLFRPVAA-- 208

Query: 294 EEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEEILYEH 353
            +G+  TL D +K + P                      +  ED G  KN          
Sbjct: 209 -DGQLHTLGDLLKEVCPS--------------------AIDPED-GEKKNQ--------- 237

Query: 354 VTRNAEIKLVRIQGIEPKLEIPFSWV 379
                    V I GIEP LE P  W+
Sbjct: 238 ---------VMIHGIEPMLETPLQWL 254

May play an important role in the apoptotic process, possibly within the modified cytoskeleton. Its expression is a relatively late event in the apoptotic process, occurring downstream of caspase activity.

Homo sapiens (taxid: 9606)

>sp|Q99J83|ATG5_MOUSE Autophagy protein 5 OS=Mus musculus GN=Atg5 PE=1 SV=1

 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 3/164 (1%)

Query: 55  VWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSL-PPGVDTIW 113
           VW G IP    L++ E+T     P  L+L PR+ YL L+   +K +F   +    V  IW
Sbjct: 11  VWFGRIPTCFTLYQDEITEREAEPYYLLL-PRVSYLTLVTDKVKKHFQKVMRQEDVSEIW 69

Query: 114 FEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSL 173
           FEY+G PLKW+ P G+LFDLL +    PWN+TVHF+ +P   L+ C  +D+V+  F++ +
Sbjct: 70  FEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAVEAHFMSCM 129

Query: 174 KEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKL 217
           KEA   +    + +  M + D  +LW  + N   + +  ++ KL
Sbjct: 130 KEAD-ALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKL 172

Required for autophagy. Conjugates to ATG12 and associates with isolation membrane to form cup-shaped isolation membrane and autophagosome. The conjugate detaches from the membrane immediately before or after autophagosome formation is completed.

Mus musculus (taxid: 10090)

>sp|A1CE93|ATG5_ASPCL Autophagy protein 5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=atg5 PE=3 SV=2

 Score =  115 bits (288), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 103/190 (54%), Gaps = 24/190 (12%)

Query: 52  RKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSL---PPG 108
           +K VW+G +PLQI L  SE  T     P LI  PRI YLP L+  ++ +F SSL      
Sbjct: 11  QKTVWDGKLPLQITLASSESRTFDQTDPYLISCPRISYLPSLLPRLRSFFASSLIEPKSQ 70

Query: 109 VDTIWFEYKGLPLKWYTPTGVLFDLLC-AEPER-------------------PWNLTVHF 148
               WF ++G+PLKW+ P G+L+DL   A+P                     PW LT+HF
Sbjct: 71  PHEGWFSFEGVPLKWHLPIGLLYDLYAGADPASKGSRPDESEQIISSVGDTLPWRLTLHF 130

Query: 149 RGYPVHVLIPCEGEDSVKW-SFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNL 207
             +P   L+  + +  V   +FINS+KEA ++ NG  K +M++S+ D   LW +V + +L
Sbjct: 131 SDWPDEELVRLDADGMVMHDAFINSVKEADFLRNGTAKGIMSLSKEDSSGLWEAVQDVDL 190

Query: 208 EAYLRVSSKL 217
            ++ R+S+ L
Sbjct: 191 PSFQRISNIL 200

Involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. May be required for atg8 association to the vesicle membranes.

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

>sp|Q4WNA5|ATG5_ASPFU Autophagy protein 5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=atg5 PE=3 SV=1

 Score =  114 bits (286), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 24/202 (11%)

Query: 40  SLNRNRNMHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKP 99
           S+  N+      ++ VW+G +PLQI L  SE  T     P LI  PRI YLP L+  ++ 
Sbjct: 5   SMMENQVSLSSIQRAVWDGKLPLQITLASSESRTYDQTDPYLIACPRISYLPSLLPRLRA 64

Query: 100 YFGSSL-PPGVDTI--WFEYKGLPLKWYTPTGVLFDLLC-AEPER--------------- 140
           +F  SL  P       WF ++G+PLKW+ P G+L+DL   A+P                 
Sbjct: 65  FFSPSLIEPNSQPHEGWFSFEGVPLKWHLPVGLLYDLYAGADPASKGTRVDETDHPTSSL 124

Query: 141 ----PWNLTVHFRGYPVHVLIPCEGEDSVKW-SFINSLKEAAYIINGNCKNVMNMSQSDQ 195
               PW LTVHF  +P   L+  + +  V   +FINS+KEA ++ NG  K +M +S+ D 
Sbjct: 125 NDTLPWRLTVHFSDWPDEELVRLDADGMVMHDAFINSVKEADFLRNGTAKGIMTLSKEDS 184

Query: 196 VELWRSVMNGNLEAYLRVSSKL 217
             LW++V + +L ++ R+S+ L
Sbjct: 185 AGLWQAVQDVDLLSFQRISNIL 206

Involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. May be required for atg8 association to the vesicle membranes.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
255571273	368	conserved hypothetical protein [Ricinus	0.873	0.899	0.725	1e-139
147865545	359	hypothetical protein VITISV_004197 [Viti	0.868	0.916	0.736	1e-132
225427089	377	PREDICTED: autophagy protein 5-like [Vit	0.878	0.883	0.723	1e-132
297742028	351	unnamed protein product [Vitis vinifera]	0.844	0.911	0.728	1e-132
224135113	345	predicted protein [Populus trichocarpa]	0.825	0.907	0.706	1e-128
15237945	337	autophagy protein 5 [Arabidopsis thalian	0.828	0.931	0.673	1e-126
297811873	337	APG5/ATG5 [Arabidopsis lyrata subsp. lyr	0.828	0.931	0.661	1e-124
358248632	349	uncharacterized protein LOC100789045 [Gl	0.844	0.916	0.697	1e-120
356500989	350	PREDICTED: autophagy protein 5 [Glycine	0.844	0.914	0.698	1e-120
388510734	349	unknown [Lotus japonicus]	0.844	0.916	0.700	1e-119

>gi|255571273|ref|XP_002526586.1| conserved hypothetical protein [Ricinus communis] gi|223534080|gb|EEF35798.1| conserved hypothetical protein [Ricinus communis]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/343 (72%), Positives = 283/343 (82%), Gaps = 12/343 (3%)

Query: 49  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 108
           MEA+K VW GAIPLQIHLHESEVTT   PPPALIL PRIGYLPLL+ LIKP+F S+LPPG
Sbjct: 1   MEAQKNVWGGAIPLQIHLHESEVTTHQRPPPALILGPRIGYLPLLIPLIKPHFSSTLPPG 60

Query: 109 VDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWS 168
            DT+WF+Y GLPLKWY PTGVLFDLLCA+PERPWNLTVHFRGYP ++LIPCEGEDSVKWS
Sbjct: 61  SDTVWFDYHGLPLKWYIPTGVLFDLLCAQPERPWNLTVHFRGYPNNLLIPCEGEDSVKWS 120

Query: 169 FINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTV 228
           FINSLKEA YIINGNCKNVMNMSQSDQVELWRSVMNGNLEAY+  SSKLKL T+ED++T+
Sbjct: 121 FINSLKEADYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYMHASSKLKLGTIEDEFTL 180

Query: 229 KLNSSS-KSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINR 287
           K +S S KS + TG+ D AG VKTG+IPVRLY+W+VSEDF+DLED P ID WDKIS+INR
Sbjct: 181 KPDSCSPKSHKTTGDVDMAGHVKTGKIPVRLYIWTVSEDFEDLEDIPKIDSWDKISYINR 240

Query: 288 PVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFN-------DESP-KLEDEEMNLSSEDAG 339
           P+E   EEGKCF+L DA+KTL+PEY  DK L +       DE P ++ED+E  +SSE+A 
Sbjct: 241 PIEFHREEGKCFSLHDALKTLMPEYLADKSLIDEEPFRVEDEEPFRVEDDEQKVSSEEAS 300

Query: 340 SN-KNTEVEEILYE--HVTRNAEIKLVRIQGIEPKLEIPFSWV 379
           SN K  +  EI  +  H    AEIKLVRIQGIEPKLEIPFSWV
Sbjct: 301 SNRKAADGGEISSQSAHSYGAAEIKLVRIQGIEPKLEIPFSWV 343

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865545|emb|CAN83659.1| hypothetical protein VITISV_004197 [Vitis vinifera]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/334 (73%), Positives = 275/334 (82%), Gaps = 5/334 (1%)

Query: 47  MHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLP 106
           M  EA+KYVWEGAIPLQIHLHESEVTTLP P PAL+LAPR+GYLPLL+ L+KP+F S+LP
Sbjct: 1   MGREAQKYVWEGAIPLQIHLHESEVTTLPHPSPALVLAPRMGYLPLLLPLLKPHFSSTLP 60

Query: 107 PGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVK 166
           PGVDTIWFEYKGLPLKW+ PTGVLFDLLCAE ERPWNLTVHFRGYP ++L PCEGEDSVK
Sbjct: 61  PGVDTIWFEYKGLPLKWHIPTGVLFDLLCAEQERPWNLTVHFRGYPGNILTPCEGEDSVK 120

Query: 167 WSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDY 226
           WSFINSLKEAAYI+NGNCKNVMNMSQSDQVELW SV+NGN+E Y RVSSKLKL  V D Y
Sbjct: 121 WSFINSLKEAAYIVNGNCKNVMNMSQSDQVELWHSVLNGNMEXYQRVSSKLKLEKVGDQY 180

Query: 227 TVKLNSS-SKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFI 285
             K NS+  KS+  TGETD  G VKTGRIPVRLYVWSVS+DFDDLEDAP ID WD+IS++
Sbjct: 181 VGKPNSNLLKSRTNTGETDTGGPVKTGRIPVRLYVWSVSKDFDDLEDAPQIDSWDQISYM 240

Query: 286 NRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTE 345
           NRPVE+  EE KCFTLRDA+K LLPE F +K L ++E  + E EE + +  D  S  NT 
Sbjct: 241 NRPVEIHREEDKCFTLRDAVKALLPELFVEKTLIDEEISRTELEEESRAPSDDES--NTR 298

Query: 346 VEEILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV 379
            EE + E    N  +KLVRIQGIEPKLEIPFSWV
Sbjct: 299 NEEDVEEKQREN--LKLVRIQGIEPKLEIPFSWV 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427089|ref|XP_002276604.1| PREDICTED: autophagy protein 5-like [Vitis vinifera]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/343 (72%), Positives = 283/343 (82%), Gaps = 10/343 (2%)

Query: 47  MHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLP 106
           M  EA+KYVWEGAIPLQIHLHESEVTTLP P PAL+LAPR+GYLPLL+ L+KP+F S+LP
Sbjct: 6   MGREAQKYVWEGAIPLQIHLHESEVTTLPHPSPALVLAPRMGYLPLLLPLLKPHFSSTLP 65

Query: 107 PGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVK 166
           PGVDTIWFEYKGL LKW+ PTGVLFDLLCAE ERPWNLTVHFRGYP ++L PCEGEDSVK
Sbjct: 66  PGVDTIWFEYKGLALKWHIPTGVLFDLLCAEQERPWNLTVHFRGYPGNILTPCEGEDSVK 125

Query: 167 WSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDY 226
           WSFINSLKEAAYI+NGNCKNVMNMSQSDQ+ELW SV+NGN+EAY RVSSKLKL  V D Y
Sbjct: 126 WSFINSLKEAAYIVNGNCKNVMNMSQSDQMELWHSVLNGNMEAYQRVSSKLKLEKVGDQY 185

Query: 227 TVKLNSS-SKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFI 285
             K NS+  KS+  TGETD  G VKTGRIPVRLYVWSVS+DFDDLEDAP ID WD+IS++
Sbjct: 186 VGKPNSNLLKSRTNTGETDTGGPVKTGRIPVRLYVWSVSKDFDDLEDAPQIDSWDQISYM 245

Query: 286 NRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLE-DEEMNLSSEDAGSNKNT 344
           NRPVE+  EE KCFTLRDA+K LLPE F +K L ++E  ++E +EE    S+D  + +N 
Sbjct: 246 NRPVEIHREEDKCFTLRDAVKALLPELFVEKTLIDEEISRIELEEESRAPSDDESNTRNE 305

Query: 345 E-VEEILYEHV-----TRNAE--IKLVRIQGIEPKLEIPFSWV 379
           E VEE   E+V     + +AE  +KLVRIQGIEPKLEIPFSWV
Sbjct: 306 EDVEEKQRENVECCCPSDDAETKLKLVRIQGIEPKLEIPFSWV 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742028|emb|CBI33815.3| unnamed protein product [Vitis vinifera]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/335 (72%), Positives = 274/335 (81%), Gaps = 15/335 (4%)

Query: 47  MHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLP 106
           M  EA+KYVWEGAIPLQIHLHESEVTTLP P PAL+LAPR+GYLPLL+ L+KP+F S+LP
Sbjct: 1   MGREAQKYVWEGAIPLQIHLHESEVTTLPHPSPALVLAPRMGYLPLLLPLLKPHFSSTLP 60

Query: 107 PGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVK 166
           PGVDTIWFEYKGL LKW+ PTGVLFDLLCAE ERPWNLTVHFRGYP ++L PCEGEDSVK
Sbjct: 61  PGVDTIWFEYKGLALKWHIPTGVLFDLLCAEQERPWNLTVHFRGYPGNILTPCEGEDSVK 120

Query: 167 WSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDY 226
           WSFINSLKEAAYI+NGNCKNVMNMSQSDQ+ELW SV+NGN+EAY RVSSKLKL  V D Y
Sbjct: 121 WSFINSLKEAAYIVNGNCKNVMNMSQSDQMELWHSVLNGNMEAYQRVSSKLKLEKVGDQY 180

Query: 227 TVKLNSS-SKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFI 285
             K NS+  KS+  TGETD  G VKTGRIPVRLYVWSVS+DFDDLEDAP ID WD+IS++
Sbjct: 181 VGKPNSNLLKSRTNTGETDTGGPVKTGRIPVRLYVWSVSKDFDDLEDAPQIDSWDQISYM 240

Query: 286 NRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTE 345
           NRPVE+  EE KCFTLRDA+K LLPE F +K L ++E  ++E EE + +  D  SN    
Sbjct: 241 NRPVEIHREEDKCFTLRDAVKALLPELFVEKTLIDEEISRIELEEESRAPSDDESN---- 296

Query: 346 VEEILYEHVTRNAE-IKLVRIQGIEPKLEIPFSWV 379
                    TRN E +KLVRIQGIEPKLEIPFSWV
Sbjct: 297 ---------TRNEEDLKLVRIQGIEPKLEIPFSWV 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135113|ref|XP_002327569.1| predicted protein [Populus trichocarpa] gi|222836123|gb|EEE74544.1| predicted protein [Populus trichocarpa]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/337 (70%), Positives = 273/337 (81%), Gaps = 24/337 (7%)

Query: 49  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 108
           MEA+KYVWEGAIPLQIHLHESE+T+LPPP PALILAPRIGYLPLL+ LIKPYF S+LPPG
Sbjct: 2   MEAQKYVWEGAIPLQIHLHESEITSLPPPSPALILAPRIGYLPLLLPLIKPYFSSTLPPG 61

Query: 109 VDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWS 168
            DTIWF+YKGLPLKWY PTGVLFDLLCA+PERPWNLTVHFRGYP ++LIPCEGE+SVKWS
Sbjct: 62  QDTIWFDYKGLPLKWYIPTGVLFDLLCAQPERPWNLTVHFRGYPSNLLIPCEGEESVKWS 121

Query: 169 FINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTV 228
           FINSLKEA YIINGNCKNVM+MSQSDQVELW SVM+GNLE Y+R SSKLKL TV  D   
Sbjct: 122 FINSLKEADYIINGNCKNVMHMSQSDQVELWHSVMDGNLEKYIRASSKLKLGTVTTD--- 178

Query: 229 KLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRP 288
                        E D  GQVK G+IPVRLYVWSV+EDF+DLEDAP++D WD+IS+INRP
Sbjct: 179 -------------EADMVGQVKAGKIPVRLYVWSVNEDFEDLEDAPEVDNWDQISYINRP 225

Query: 289 VEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEE--MNLSSEDAGSNKNTEV 346
           +E+  ++GK FTL DA+K LLPE+F  K L NDE P +E+ E    +SSEDAGS+   E 
Sbjct: 226 LEIH-KQGKHFTLHDALKNLLPEFFGGKSLINDE-PCIEEGEDVQKVSSEDAGSSTGAEE 283

Query: 347 EEILY----EHVTRNAEIKLVRIQGIEPKLEIPFSWV 379
            + ++    E    +AEIKLVRIQGIEPK+EIPFSWV
Sbjct: 284 GKEIFNQPVESCCNDAEIKLVRIQGIEPKMEIPFSWV 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237945|ref|NP_197231.1| autophagy protein 5 [Arabidopsis thaliana] gi|75170235|sp|Q9FFI2.1|ATG5_ARATH RecName: Full=Autophagy protein 5; AltName: Full=Protein autophagy 5; Short=AtAPG5 gi|10177074|dbj|BAB10516.1| APG5 (autophagy 5)-like protein [Arabidopsis thaliana] gi|26450228|dbj|BAC42232.1| APG5 (autophagy 5) like protein [Arabidopsis thaliana] gi|28827578|gb|AAO50633.1| putative APG5 (autophagy 5) protein [Arabidopsis thaliana] gi|332005026|gb|AED92409.1| autophagy protein 5 [Arabidopsis thaliana]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/334 (67%), Positives = 263/334 (78%), Gaps = 20/334 (5%)

Query: 47  MHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLP 106
           M  EA KYVWEGAIPLQIHLH+S+V + P PPPAL+LAPRIGYLPLL+ LIKPYF  SLP
Sbjct: 1   MAKEAVKYVWEGAIPLQIHLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKDSLP 60

Query: 107 PGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVK 166
           PG D+IWF+YKG PLKWY PTGVLFDLLCAEPERPWNLT+HFRGYP ++LIPCEGEDSVK
Sbjct: 61  PGEDSIWFDYKGFPLKWYIPTGVLFDLLCAEPERPWNLTIHFRGYPCNILIPCEGEDSVK 120

Query: 167 WSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDY 226
           W+F+NSLKEA YIINGNCKNVMNMSQSDQ +LW SVMNG+L+AY R+S KLK+ TVED++
Sbjct: 121 WNFVNSLKEAQYIINGNCKNVMNMSQSDQEDLWTSVMNGDLDAYTRLSPKLKMGTVEDEF 180

Query: 227 TVKLN-SSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFI 285
           + K + SS +SQQ   ET+ AGQVKT RIPVRLYV S+++DF++LED P+ID WD IS++
Sbjct: 181 SRKTSLSSPQSQQVVPETEVAGQVKTARIPVRLYVRSLNKDFENLEDVPEIDTWDDISYL 240

Query: 286 NRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTE 345
           NRPVE   EEGKCFTLRDAIK+LLPE+  D+   + E   ++D E    S + G      
Sbjct: 241 NRPVEFLKEEGKCFTLRDAIKSLLPEFMGDRAQTSGEERSIDDTEEADGSREMG------ 294

Query: 346 VEEILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV 379
                        EIKLVRIQGIE KLEIPFSWV
Sbjct: 295 -------------EIKLVRIQGIEMKLEIPFSWV 315

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811873|ref|XP_002873820.1| APG5/ATG5 [Arabidopsis lyrata subsp. lyrata] gi|297319657|gb|EFH50079.1| APG5/ATG5 [Arabidopsis lyrata subsp. lyrata]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/334 (66%), Positives = 263/334 (78%), Gaps = 20/334 (5%)

Query: 47  MHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLP 106
           M  EA KYVWEGAIPLQI+LH+S+V + P PPPAL+LAPRIGYLPLL+ LIKPYF  SLP
Sbjct: 1   MAKEAVKYVWEGAIPLQIYLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKDSLP 60

Query: 107 PGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVK 166
           PG D+IWF+YKG PLKWY PTGVLFDLLCAEPERPWNLT+HFRGYP ++LIPCEGEDSVK
Sbjct: 61  PGEDSIWFDYKGFPLKWYIPTGVLFDLLCAEPERPWNLTIHFRGYPSNILIPCEGEDSVK 120

Query: 167 WSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDY 226
           W+F+NSLKEA YIINGNCKNVMNMSQSDQ +LW SVMNG+L+AY R+S KLK+ TVED++
Sbjct: 121 WNFVNSLKEAQYIINGNCKNVMNMSQSDQEDLWTSVMNGDLDAYTRLSPKLKMGTVEDEF 180

Query: 227 TVKLN-SSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFI 285
           +   + SS +S Q   ETD AGQVKT RIPVRLYV S+++DF++LED  +ID WD IS++
Sbjct: 181 SRTTSLSSPQSGQVVAETDVAGQVKTARIPVRLYVRSINKDFENLEDVLEIDTWDDISYL 240

Query: 286 NRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTE 345
           NRPVE   EEGKCFTLRDAI++LLPE+  D+   + E   ++D      +E+A  ++ T 
Sbjct: 241 NRPVEFLREEGKCFTLRDAIESLLPEFMGDRAQTSGEERSMDD------TEEADGSRET- 293

Query: 346 VEEILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV 379
                        EIKLVRIQGIE KLEIPFSWV
Sbjct: 294 ------------GEIKLVRIQGIEMKLEIPFSWV 315

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248632|ref|NP_001239914.1| uncharacterized protein LOC100789045 [Glycine max] gi|255637617|gb|ACU19133.1| unknown [Glycine max]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/331 (69%), Positives = 266/331 (80%), Gaps = 11/331 (3%)

Query: 50  EARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPGV 109
           EA+K+VWEGAIPLQIHLHESEVTTLPPPPPAL+LAPR+GYLPLL+ L+KP F S+LPPGV
Sbjct: 3   EAQKHVWEGAIPLQIHLHESEVTTLPPPPPALVLAPRLGYLPLLISLLKPQFSSTLPPGV 62

Query: 110 DTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSF 169
           DTIWFEYKGLPLKWY PTGVLFDLLC EPERPWNLTVHFRGYP ++L+PCEGEDSVKWSF
Sbjct: 63  DTIWFEYKGLPLKWYIPTGVLFDLLCVEPERPWNLTVHFRGYPSNILLPCEGEDSVKWSF 122

Query: 170 INSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVK 229
           INSLKEAAYIINGN KNVMNMSQ+DQVELW SV+NGNLE Y RV+SKLKL T ED+Y   
Sbjct: 123 INSLKEAAYIINGNSKNVMNMSQTDQVELWGSVLNGNLETYRRVASKLKLGTFEDEYMEN 182

Query: 230 LNSS-SKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRP 288
           ++S   KS Q  G+TD  GQVKTGRIPVRLY+W+V+E+FDD EDAP ID WDK+S+INRP
Sbjct: 183 VSSVLIKSPQSPGDTDVTGQVKTGRIPVRLYLWTVNEEFDDFEDAPQIDNWDKVSYINRP 242

Query: 289 VEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEE 348
           VE+  E+GK F+L DA+K +LPE+F +     +    +   E   SS D GS+ NT    
Sbjct: 243 VEIYKEDGKYFSLNDAVKRILPEFFPENSFVTEGDANINQIEEGESSSDPGSSCNT---- 298

Query: 349 ILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV 379
                    AEIK VR+QGIEP L+IPFSWV
Sbjct: 299 ------LEIAEIKFVRVQGIEPILDIPFSWV 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500989|ref|XP_003519312.1| PREDICTED: autophagy protein 5 [Glycine max]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/332 (69%), Positives = 265/332 (79%), Gaps = 12/332 (3%)

Query: 50  EARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPGV 109
           EA+K VW+GAIPLQIHLHESEVTTLPPPPPAL+LAPRIGYLPLL+ L+KP F ++LPPGV
Sbjct: 3   EAQKQVWKGAIPLQIHLHESEVTTLPPPPPALVLAPRIGYLPLLISLLKPQFSTTLPPGV 62

Query: 110 DTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSF 169
           DTIWFEYKGLPLKWY PTGVLFDLLC EPERPWNLTVHFRGYP  VL+PCEGEDSVKWSF
Sbjct: 63  DTIWFEYKGLPLKWYIPTGVLFDLLCVEPERPWNLTVHFRGYPSIVLLPCEGEDSVKWSF 122

Query: 170 INSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVK 229
           INSLKEAAY+INGN KNVMNMSQ+DQVELW SV+NGN E Y RV+SKLKL T ED+Y   
Sbjct: 123 INSLKEAAYVINGNSKNVMNMSQTDQVELWGSVLNGNFETYRRVASKLKLGTFEDEYMEN 182

Query: 230 LNSS-SKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRP 288
           ++S   KS Q TG+TD  GQ+KTGRIPVRLY+W+V+E+FDD EDAP ID WDK+S+INRP
Sbjct: 183 VSSVLVKSSQSTGDTDVTGQLKTGRIPVRLYLWTVNEEFDDFEDAPQIDNWDKVSYINRP 242

Query: 289 VEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKL-EDEEMNLSSEDAGSNKNTEVE 347
           VE+  E+GK F+L DA+K +LPE+F +     D    + +  E   SS D GS  NT   
Sbjct: 243 VEIYKEDGKYFSLNDAVKRILPEFFLENSFVTDGDANINQSGEEGESSSDPGSCCNT--- 299

Query: 348 EILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV 379
                     AEIKLVRIQGIEP L+IPFSWV
Sbjct: 300 -------LEIAEIKLVRIQGIEPILDIPFSWV 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510734|gb|AFK43433.1| unknown [Lotus japonicus]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/331 (70%), Positives = 266/331 (80%), Gaps = 11/331 (3%)

Query: 50  EARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPGV 109
           EA+KYVWEGAIPLQIHLHESEVTTLPPPPPAL+LAPRIGYLPLL+ L+KP+F S+LPPG 
Sbjct: 3   EAQKYVWEGAIPLQIHLHESEVTTLPPPPPALVLAPRIGYLPLLISLLKPHFSSTLPPGQ 62

Query: 110 DTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSF 169
           DTIWFEYKGLPLKWY PTGVLFDLLC EPERPWN TVHFRGYP ++L+PCEGEDSVK SF
Sbjct: 63  DTIWFEYKGLPLKWYIPTGVLFDLLCVEPERPWNPTVHFRGYPSNLLLPCEGEDSVKRSF 122

Query: 170 INSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVK 229
           INSLKEAAY+INGNCKNVMNMSQ DQVELW SV+NGNLE+Y RVSSKLKL T ED +T  
Sbjct: 123 INSLKEAAYVINGNCKNVMNMSQPDQVELWGSVLNGNLESYRRVSSKLKLGTFEDKHTEN 182

Query: 230 LNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPV 289
           +NS     + TG+TD AGQVK+GRIPVRLYVW+V+E+FDD EDAP +D WDK+S+ NRPV
Sbjct: 183 INSVLPKSESTGDTDAAGQVKSGRIPVRLYVWTVNEEFDDFEDAPQVDDWDKVSYTNRPV 242

Query: 290 EVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKL-EDEEMNLSSEDAGSNKNTEVEE 348
           E+  E+GK F+L DA++ LLPE+F      N+    +    E   +S D GS  + +  E
Sbjct: 243 EIHNEDGKFFSLNDAVRRLLPEFFQGSSFDNEGDTNINRTTEEGENSGDPGS--SFDAHE 300

Query: 349 ILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV 379
           I        AEIKLVRIQGIEP LEIPFSWV
Sbjct: 301 I--------AEIKLVRIQGIEPILEIPFSWV 323

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2167195	337	APG5 "AT5G17290" [Arabidopsis	0.799	0.899	0.651	2.5e-106
ZFIN|ZDB-GENE-040801-149	275	atg5 "ATG5 autophagy related 5	0.440	0.607	0.325	6.1e-30
UNIPROTKB|Q9H1Y0	275	ATG5 "Autophagy protein 5" [Ho	0.443	0.610	0.323	3.2e-28
MGI|MGI:1277186	275	Atg5 "autophagy related 5" [Mu	0.422	0.581	0.345	3.2e-28
UNIPROTKB|F6V678	275	ATG5 "Uncharacterized protein"	0.443	0.610	0.323	4.1e-28
UNIPROTKB|Q3MQ24	275	ATG5 "Autophagy protein 5" [Bo	0.443	0.610	0.323	8.4e-28
RGD|1359580	275	Atg5 "autophagy related 5" [Ra	0.422	0.581	0.345	1.1e-27
UNIPROTKB|F1RVE4	275	ATG5 "Autophagy protein 5" [Su	0.403	0.556	0.348	1.1e-27
UNIPROTKB|I3LTI9	275	ATG5 "Autophagy protein 5" [Su	0.422	0.581	0.339	1.4e-27
UNIPROTKB|Q3MQ04	275	ATG5 "Autophagy protein 5" [Su	0.424	0.585	0.323	1.7e-27

TAIR|locus:2167195 APG5 "AT5G17290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 198/304 (65%), Positives = 237/304 (77%)

Query:    47 MHMEARKYVWEGAIPLQIHLHESEVTTXXXXXXXXXXXXRIGYLPLLVGLIKPYFGSSLP 106
             M  EA KYVWEGAIPLQIHLH+S+V +            RIGYLPLL+ LIKPYF  SLP
Sbjct:     1 MAKEAVKYVWEGAIPLQIHLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKDSLP 60

Query:   107 PGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVK 166
             PG D+IWF+YKG PLKWY PTGVLFDLLCAEPERPWNLT+HFRGYP ++LIPCEGEDSVK
Sbjct:    61 PGEDSIWFDYKGFPLKWYIPTGVLFDLLCAEPERPWNLTIHFRGYPCNILIPCEGEDSVK 120

Query:   167 WSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDY 226
             W+F+NSLKEA YIINGNCKNVMNMSQSDQ +LW SVMNG+L+AY R+S KLK+ TVED++
Sbjct:   121 WNFVNSLKEAQYIINGNCKNVMNMSQSDQEDLWTSVMNGDLDAYTRLSPKLKMGTVEDEF 180

Query:   227 TVKLN-SSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFI 285
             + K + SS +SQQ   ET+ AGQVKT RIPVRLYV S+++DF++LED P+ID WD IS++
Sbjct:   181 SRKTSLSSPQSQQVVPETEVAGQVKTARIPVRLYVRSLNKDFENLEDVPEIDTWDDISYL 240

Query:   286 NRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTE 345
             NRPVE   EEGKCFTLRDAIK+LLPE+  D+   + E   ++D E    S + G  K   
Sbjct:   241 NRPVEFLKEEGKCFTLRDAIKSLLPEFMGDRAQTSGEERSIDDTEEADGSREMGEIKLVR 300

Query:   346 VEEI 349
             ++ I
Sbjct:   301 IQGI 304

GO:0005215 "transporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006914 "autophagy" evidence=IEA;ISS;IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0042594 "response to starvation" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

ZFIN|ZDB-GENE-040801-149 atg5 "ATG5 autophagy related 5 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 246 (91.7 bits), Expect = 6.1e-30, Sum P(3) = 6.1e-30
 Identities = 56/172 (32%), Positives = 85/172 (49%)

Query:    55 VWEGAIPLQIHLHESEVTTXXXXXXXXXXXXRIGYLPLLVGLIKPYFGSSLPP-GVDTIW 113
             VW G IP    L   E TT            R+ YL L+   +K +F   +    V+ +W
Sbjct:    13 VWFGRIPACFTLSPDE-TTEREAEPYYLLLPRVSYLTLVTDKVKKHFLKVMKAEDVEEMW 71

Query:   114 FEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSL 173
             FE++G PLKW+ P GVLFDL  +    PWN+TVHF+ +P   L+ C     ++  F++ +
Sbjct:    72 FEHEGTPLKWHYPIGVLFDLHASNSALPWNVTVHFKNFPEQDLLHCSTNSVIEAHFMSCI 131

Query:   174 KEA-AYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVED 224
             KEA A    G   N  +M + D  +LW  + N   + +  ++ KL     E+
Sbjct:   132 KEADALKHKGQVIN--DMQKKDHKQLWMGLQNDKFDQFWAMNRKLMEYPTEE 181

GO:0005737 "cytoplasm" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0007399 "nervous system development" evidence=IMP

UNIPROTKB|Q9H1Y0 ATG5 "Autophagy protein 5" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
 Identities = 56/173 (32%), Positives = 93/173 (53%)

Query:    55 VWEGAIPLQIHLHESEVTTXXXXXXXXXXXXRIGYLPLLVGLIKPYFGSSL-PPGVDTIW 113
             VW G IP    L++ E+T             R+ YL L+   +K +F   +    +  IW
Sbjct:    11 VWFGRIPTCFTLYQDEITEREAEPYYLLLP-RVSYLTLVTDKVKKHFQKVMRQEDISEIW 69

Query:   114 FEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSL 173
             FEY+G PLKW+ P G+LFDLL +    PWN+TVHF+ +P   L+ C  +D+++  F++ +
Sbjct:    70 FEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCM 129

Query:   174 KEAAYIINGNCKNVMN-MSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDD 225
             KEA  + + +   V+N M + D  +LW  + N   + +  ++ KL     E++
Sbjct:   130 KEADALKHKS--QVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN 180

GO:0006915 "apoptotic process" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0042311 "vasodilation" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0048840 "otolith development" evidence=IEA

GO:0055015 "ventricular cardiac muscle cell development" evidence=IEA

GO:0060047 "heart contraction" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006914 "autophagy" evidence=ISS

GO:0034045 "pre-autophagosomal structure membrane" evidence=ISS

GO:0043687 "post-translational protein modification" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

MGI|MGI:1277186 Atg5 "autophagy related 5" [Mus musculus (taxid:10090)]

 Score = 275 (101.9 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
 Identities = 57/165 (34%), Positives = 90/165 (54%)

Query:    55 VWEGAIPLQIHLHESEVTTXXXXXXXXXXXXRIGYLPLLVGLIKPYFGSSL-PPGVDTIW 113
             VW G IP    L++ E+T             R+ YL L+   +K +F   +    V  IW
Sbjct:    11 VWFGRIPTCFTLYQDEITEREAEPYYLLLP-RVSYLTLVTDKVKKHFQKVMRQEDVSEIW 69

Query:   114 FEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSL 173
             FEY+G PLKW+ P G+LFDLL +    PWN+TVHF+ +P   L+ C  +D+V+  F++ +
Sbjct:    70 FEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAVEAHFMSCM 129

Query:   174 KEAAYIINGNCKNVMN-MSQSDQVELWRSVMNGNLEAYLRVSSKL 217
             KEA  + + +   V+N M + D  +LW  + N   + +  ++ KL
Sbjct:   130 KEADALKHKS--QVINEMQKKDHKQLWMGLQNDRFDQFWAINRKL 172

GO:0000045 "autophagic vacuole assembly" evidence=IMP

GO:0001974 "blood vessel remodeling" evidence=IMP

GO:0002739 "regulation of cytokine secretion involved in immune response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005776 "autophagic vacuole" evidence=ISA;IDA

GO:0006914 "autophagy" evidence=IMP

GO:0009620 "response to fungus" evidence=IMP

GO:0031397 "negative regulation of protein ubiquitination" evidence=IMP

GO:0034045 "pre-autophagosomal structure membrane" evidence=IDA

GO:0042311 "vasodilation" evidence=IMP

GO:0042493 "response to drug" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0043687 "post-translational protein modification" evidence=IDA

GO:0048840 "otolith development" evidence=IMP

GO:0055015 "ventricular cardiac muscle cell development" evidence=IMP

GO:0060047 "heart contraction" evidence=IMP

UNIPROTKB|F6V678 ATG5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 274 (101.5 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
 Identities = 56/173 (32%), Positives = 93/173 (53%)

Query:    55 VWEGAIPLQIHLHESEVTTXXXXXXXXXXXXRIGYLPLLVGLIKPYFGSSL-PPGVDTIW 113
             VW G IP    L++ E+T             R+ YL L+   +K +F   +    +  IW
Sbjct:    11 VWFGRIPTCFTLYQDEITEREAEPYYLLLP-RVSYLTLVTDKVKKHFQKVMRQEDISEIW 69

Query:   114 FEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSL 173
             FEY+G PLKW+ P G+LFDLL +    PWN+TVHF+ +P   L+ C  +D+++  F++ +
Sbjct:    70 FEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCV 129

Query:   174 KEAAYIINGNCKNVMN-MSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDD 225
             KEA  + + +   V+N M + D  +LW  + N   + +  ++ KL     E++
Sbjct:   130 KEADALKHKS--QVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN 180

GO:0006914 "autophagy" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q3MQ24 ATG5 "Autophagy protein 5" [Bos taurus (taxid:9913)]

 Score = 271 (100.5 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 56/173 (32%), Positives = 92/173 (53%)

Query:    55 VWEGAIPLQIHLHESEVTTXXXXXXXXXXXXRIGYLPLLVGLIKPYFGSSL-PPGVDTIW 113
             VW G IP    L++ E+T             R+ YL L+   +K +F   +    +  IW
Sbjct:    11 VWFGRIPTCFTLYQDEITEREAEPYYLLLP-RVSYLTLVTDKVKKHFQKVMRQEDISEIW 69

Query:   114 FEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSL 173
             FEY+G PLKW+ P G+LFDLL +    PWN+TVHF+ +P   L+ C  +D ++  F++ +
Sbjct:    70 FEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDVIEAHFMSCV 129

Query:   174 KEAAYIINGNCKNVMN-MSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDD 225
             KEA  + + +   V+N M + D  +LW  + N   + +  ++ KL     E++
Sbjct:   130 KEADALKHKS--QVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN 180

GO:0060047 "heart contraction" evidence=IEA

GO:0055015 "ventricular cardiac muscle cell development" evidence=IEA

GO:0048840 "otolith development" evidence=IEA

GO:0043687 "post-translational protein modification" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042311 "vasodilation" evidence=IEA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

RGD|1359580 Atg5 "autophagy related 5" [Rattus norvegicus (taxid:10116)]

 Score = 271 (100.5 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 57/165 (34%), Positives = 90/165 (54%)

Query:    55 VWEGAIPLQIHLHESEVTTXXXXXXXXXXXXRIGYLPLLVGLIKPYFGSSL-PPGVDTIW 113
             VW G IP    L++ E+T             R+ YL L+   +K +F   +    V  IW
Sbjct:    11 VWFGRIPTCFTLYQDEITEREAEPYYLLLP-RVSYLTLVTDKVKKHFQKVMRQEDVSEIW 69

Query:   114 FEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSL 173
             FEY+G PLKW+ P G+LFDLL +    PWN+TVHF+ +P   L+ C  +D+V+  F++ +
Sbjct:    70 FEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPCKDAVEAHFMSCV 129

Query:   174 KEAAYIINGNCKNVMN-MSQSDQVELWRSVMNGNLEAYLRVSSKL 217
             KEA  + + +   V+N M + D  +LW  + N   + +  ++ KL
Sbjct:   130 KEADALKHKS--QVINEMQRKDHKQLWMGLQNDRFDQFWTINRKL 172

GO:0000045 "autophagic vacuole assembly" evidence=ISO;IMP

GO:0001974 "blood vessel remodeling" evidence=ISO

GO:0002739 "regulation of cytokine secretion involved in immune response" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005776 "autophagic vacuole" evidence=ISO

GO:0006914 "autophagy" evidence=ISO;IMP

GO:0009620 "response to fungus" evidence=ISO

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISO

GO:0034045 "pre-autophagosomal structure membrane" evidence=ISO

GO:0042311 "vasodilation" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043234 "protein complex" evidence=IDA

GO:0043687 "post-translational protein modification" evidence=ISO

GO:0048840 "otolith development" evidence=ISO

GO:0055015 "ventricular cardiac muscle cell development" evidence=ISO

GO:0060047 "heart contraction" evidence=ISO

UNIPROTKB|F1RVE4 ATG5 "Autophagy protein 5" [Sus scrofa (taxid:9823)]

 Score = 270 (100.1 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 55/158 (34%), Positives = 86/158 (54%)

Query:    55 VWEGAIPLQIHLHESEVTTXXXXXXXXXXXXRIGYLPLLVGLIKPYFGSSL-PPGVDTIW 113
             VW G IP    L++ E+T             R+ YL L+   +K +F   +    +  IW
Sbjct:    11 VWFGRIPTCFTLYQDEITEREAEPYYLLLP-RVSYLTLVTDKVKKHFQKVMRQEDISEIW 69

Query:   114 FEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSL 173
             FEY+G PLKW+ P G+LFDLL +    PWN+TVHF+ +P   L+ C  +D ++  F++ +
Sbjct:    70 FEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDVIEAHFMSCV 129

Query:   174 KEAAYIINGNCKNVMN-MSQSDQVELWRSVMNGNLEAY 210
             KEA  + + +   V+N M + D  +LW  + NG   +Y
Sbjct:   130 KEADALKHKS--QVINEMQKKDHKQLWMGLQNGKYSSY 165

GO:0060047 "heart contraction" evidence=IEA

GO:0055015 "ventricular cardiac muscle cell development" evidence=IEA

GO:0048840 "otolith development" evidence=IEA

GO:0043687 "post-translational protein modification" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042311 "vasodilation" evidence=IEA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

UNIPROTKB|I3LTI9 ATG5 "Autophagy protein 5" [Sus scrofa (taxid:9823)]

 Score = 269 (99.8 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 56/165 (33%), Positives = 88/165 (53%)

Query:    55 VWEGAIPLQIHLHESEVTTXXXXXXXXXXXXRIGYLPLLVGLIKPYFGSSL-PPGVDTIW 113
             VW G IP    L++ E+T             R+ YL L+   +K +F   +    +  IW
Sbjct:    11 VWFGRIPTCFTLYQDEITEREAEPYYLLLP-RVSYLTLVTDKVKKHFQKVMRQEDISEIW 69

Query:   114 FEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSL 173
             FEY+G PLKW+ P G+LFDLL +    PWN+TVHF+ +P   L+ C  +D ++  F++ +
Sbjct:    70 FEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDVIEAHFMSCV 129

Query:   174 KEAAYIINGNCKNVMN-MSQSDQVELWRSVMNGNLEAYLRVSSKL 217
             KEA  + + +   V+N M + D  +LW  + NG  + +     KL
Sbjct:   130 KEADALKHKS--QVINEMQKKDHKQLWMGLQNGRFQKFWTGMKKL 172

GO:0006914 "autophagy" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q3MQ04 ATG5 "Autophagy protein 5" [Sus scrofa (taxid:9823)]

 Score = 269 (99.8 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
 Identities = 53/164 (32%), Positives = 87/164 (53%)

Query:    55 VWEGAIPLQIHLHESEVTTXXXXXXXXXXXXRIGYLPLLVGLIKPYFGSSL-PPGVDTIW 113
             VW G IP    L++ E+T             R+ YL L+   +K +F   +    +  IW
Sbjct:    11 VWFGRIPTCFTLYQDEITEREAEPYYLLLP-RVSYLTLVTDKVKKHFQKVMRQEDISEIW 69

Query:   114 FEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSL 173
             FEY+G PLKW+ P G+LFDLL +    PWN+TVHF+ +P   L+ C  +D ++  F++ +
Sbjct:    70 FEYEGTPLKWHYPIGLLFDLLASISALPWNITVHFKSFPEKDLLHCPSKDVIEAHFMSCV 129

Query:   174 KEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKL 217
             KEA   +    + + +M + D  +LW  + N   + +  ++ KL
Sbjct:   130 KEAD-ALKHKSRVISDMQRKDHKQLWMGLQNDRFDQFWTINRKL 172

GO:0005737 "cytoplasm" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FFI2	ATG5_ARATH	No assigned EC number	0.6736	0.8284	0.9317	yes	no
Q6ZGL4	ATG5_ORYSJ	No assigned EC number	0.5652	0.8548	0.8526	yes	no
A2X052	ATG5_ORYSI	No assigned EC number	0.5681	0.8548	0.8526	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
pfam04106	195	pfam04106, APG5, Autophagy protein Apg5	3e-56

>gnl|CDD|217897 pfam04106, APG5, Autophagy protein Apg5

 Score =  182 bits (463), Expect = 3e-56
 Identities = 76/262 (29%), Positives = 106/262 (40%), Gaps = 90/262 (34%)

Query: 123 WYTPTGVLFDLLCAEPER-----PWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAA 177
           W+ P GVL+DLL           PW LTVHF  YP   LIPC+ EDSVK  F+NSLKEA 
Sbjct: 1   WHYPVGVLYDLLAGASPLTKSSLPWRLTVHFSDYPSDELIPCDSEDSVKDHFMNSLKEAD 60

Query: 178 YIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQ 237
           ++ NG  K +MN+S++D  +LW+SV+N N + + R+++KL                    
Sbjct: 61  FLRNGTSKVIMNLSKADSKQLWKSVVNHNFDDFWRINNKLM------------------- 101

Query: 238 QGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPVEVRTEEGK 297
                       K   IPVR+Y+ + +                    I   +   +EEG+
Sbjct: 102 -------EPPSSKFRHIPVRIYLPNTA------------------PVIQALIPPLSEEGQ 136

Query: 298 CFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEEILYEHVTRN 357
             TL DA+  LLPE F  +                                         
Sbjct: 137 PQTLGDALSELLPELFPSEE---------------------------------------- 156

Query: 358 AEIKLVRIQGIEPKLEIPFSWV 379
            E+    I GIE  L+ P  W+
Sbjct: 157 -ELAKPIIHGIEVPLDAPLQWL 177

Apg5 is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway. Length = 195

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
KOG2976	278	consensus Protein involved in autophagy and nutrie	100.0
PF04106	197	APG5: Autophagy protein Apg5 ; InterPro: IPR007239	100.0

>KOG2976 consensus Protein involved in autophagy and nutrient starvation [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-74  Score=544.81  Aligned_cols=252  Identities=39%  Similarity=0.695  Sum_probs=217.0

Q ss_pred             ccHHHHHHHhcCcccEEEEeccCCCCCCCCCCCEEEEecccchhHHHHHHHHHhhcccCCCC-CCceeEEeCCeecccCC
Q 035508           47 MHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG-VDTIWFEYKGLPLKWYT  125 (379)
Q Consensus        47 m~~eirr~vWeG~IPV~I~L~~~e~~~~~~p~p~y~~vPR~SYLpL~lp~I~~~F~~~l~~~-~~~~WFE~egvPLKWh~  125 (379)
                      |+.||.|+||||.||+||+|++++- +...+.|+|+++||.|||++++|+|+++|+++++.. ..++||||||+||||||
T Consensus         1 m~~ei~r~vW~G~ip~~itl~~~~~-s~~e~~p~~~~~PR~sYL~l~ip~V~~~fk~~l~~~~lse~WfeynG~PLKW~~   79 (278)
T KOG2976|consen    1 MDKEIKRLVWNGEIPVQITLDPDKG-SHREPAPLYILVPRESYLALYIPLVKNKFKSFLSFEPLSEIWFEYNGTPLKWYI   79 (278)
T ss_pred             CcchHHHHHhCCccceEEEEccCCC-CCCCCcchhhccchHHHHHHHHHHHHHHhhhccCCCchhHHhhhcCCcceeeec
Confidence            6679999999999999999999553 344688999999999999999999999999998643 45799999999999999


Q ss_pred             CceeeeeecCCCC-CCCeEEEEEecCCCCcccccCCChhHHHHHHHHHHhhhhhhhcCcchhhhccCHHHHHHHHHHHHc
Q 035508          126 PTGVLFDLLCAEP-ERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMN  204 (379)
Q Consensus       126 PiGVLyDll~~~~-~lPW~LtvHf~~~P~~~Ll~~~~~e~vk~~FmnsLKEAdfIrnGssK~VMsLsk~D~~qLW~sV~~  204 (379)
                      |||||||++|+.+ ..||+|||||+.||++.|++|++++++|++|||||||||||+||+||.||+|||+|+++||.||+|
T Consensus        80 PvGvLFDlL~~~~~~~~w~i~v~~~~~P~~~i~~~~s~D~~e~~F~~~lKEadyi~ng~sk~i~~msk~e~~~lW~sv~N  159 (278)
T KOG2976|consen   80 PVGVLFDLLAGSSATFLWNITVRFDSFPPTIILQMESKDQAEAFFFNCLKEADYIKNGSSKAIMNMSKNEARQLWGSVIN  159 (278)
T ss_pred             cHHHHHHHHhcCCcCcceEEEEecCCCCCceecccCCHHHHHHHHHHHHHHHHHHHcCchHHHHHHhHHHHHHHHHHHhc
Confidence            9999999999876 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhcccccccccccccccCCCCCccCCCCCccCCCCcccccceeEEEec--cCCCCCCCCCCCCCCCCcccc
Q 035508          205 GNLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVW--SVSEDFDDLEDAPDIDCWDKI  282 (379)
Q Consensus       205 ~dfd~F~~In~KL~~~~~~~~~~~~~~s~~~~~~~s~~~~~~~~~k~r~IPvRIYlp--~~~~~~~~~~d~~~~~~~~~~  282 (379)
                      +|||+||+|++|||++ .|                        .+++|+||+|||+.  ...++                
T Consensus       160 ~~fd~F~~Is~Kl~~s-~e------------------------~n~~r~IPL~iy~sq~~t~r~----------------  198 (278)
T KOG2976|consen  160 RNFDDFWEISNKLMES-VE------------------------DNRSRHIPLRIYTSQVKTARD----------------  198 (278)
T ss_pred             ccHHHHHHHHHHHHhh-cc------------------------ccccccceeEeeccccccccc----------------
Confidence            9999999999999985 22                        25689999999953  12222                


Q ss_pred             ceeeeceee--ecCCCccccHHHHHHHhcCCcCCCCCCCCCCCCcchhhhhccCccccCCCCchhhHHHHHhhhccccce
Q 035508          283 SFINRPVEV--RTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEEILYEHVTRNAEI  360 (379)
Q Consensus       283 ~~iQ~pv~p--~~~dG~~~TLgdaL~~lLP~lFps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (379)
                       |.+....|  ...||...|||++|++.+|+.++++.....                                      .
T Consensus       199 -f~~~~~~P~~~~~d~~~stlge~l~d~~~~s~~s~d~~~~--------------------------------------~  239 (278)
T KOG2976|consen  199 -FRTSLTFPCISQPDGSLSTLGEFLKDRLPDSLDSKDDING--------------------------------------N  239 (278)
T ss_pred             -hhhccccceeecCchhhhhhhHHHHhhcccccCccccccc--------------------------------------c
Confidence             23333333  235899999999999999999865522000                                      1


Q ss_pred             eeEEEeecccCCCCCCCCC
Q 035508          361 KLVRIQGIEPKLEIPFSWV  379 (379)
Q Consensus       361 ~~v~~qGIe~~l~tPl~W~  379 (379)
                      .-|+|||||+|++|||+||
T Consensus       240 ~~viihGIei~l~tpL~~l  258 (278)
T KOG2976|consen  240 DPVIIHGIEIPLHTPLYWL  258 (278)
T ss_pred             CceEEecccccccchHHHH
Confidence            1299999999999999996

>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=100.00  E-value=7.7e-59  Score=429.53  Aligned_cols=174  Identities=40%  Similarity=0.742  Sum_probs=127.1

Q ss_pred             cCCCceeeeeecCCCCCC-----CeEEEEEecCCCCcccccCCChhHHHHHHHHHHhhhhhhhcCcchhhhccCHHHHHH
Q 035508          123 WYTPTGVLFDLLCAEPER-----PWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVE  197 (379)
Q Consensus       123 Wh~PiGVLyDll~~~~~l-----PW~LtvHf~~~P~~~Ll~~~~~e~vk~~FmnsLKEAdfIrnGssK~VMsLsk~D~~q  197 (379)
                      ||||||||||++++....     ||+|||||++||++.++||++++++|++|||+|||||||||||+|+||+||++|+++
T Consensus         1 Wh~PiGvLyDl~~~~~~~~~~~~pW~ltlhf~~~P~~~li~~~~~~~~~~~fmn~lKEA~fi~~Gssk~im~Ls~~d~~~   80 (197)
T PF04106_consen    1 WHYPIGVLYDLLTGSDPLSPSLLPWKLTLHFSDYPPDQLIPCESEESIEDHFMNQLKEADFIRNGSSKVIMSLSKKDQKQ   80 (197)
T ss_dssp             SSS-HHHHHHHHHGGG---SS--EEEEEEEEESS--TTS----SSTHHHHHHHHHHHHHHHHHHSSSHHHHTS-HHHHHH
T ss_pred             CCCCceeeeeeccCCCcCcCCCCcEEEEEEeCCCChhheecCCCHHHHHHHHHHHHHHHHHHHhCCHHHHhhcCHHHHHH
Confidence            999999999999976554     999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHhcccccccccccccccCCCCCccCCCCCccCCCCcccccceeEEEeccCCCCCCCCCCCCCCC
Q 035508          198 LWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDID  277 (379)
Q Consensus       198 LW~sV~~~dfd~F~~In~KL~~~~~~~~~~~~~~s~~~~~~~s~~~~~~~~~k~r~IPvRIYlp~~~~~~~~~~d~~~~~  277 (379)
                      ||+||++|||++||+||+||++..                          +.++|+||||||+++.              
T Consensus        81 LW~si~~~~~~~f~~i~~kl~~~~--------------------------~~~~r~IPiRiy~~~~--------------  120 (197)
T PF04106_consen   81 LWQSIVNHDFDQFWSINSKLMPPD--------------------------PSKFRHIPIRIYLPGS--------------  120 (197)
T ss_dssp             HHHHHHHT-HHHHHHHHHHHS------------------------------SS-SB--EEEEE-SS--------------
T ss_pred             HHHHHHHhCHHHHHHHHHHHHhhc--------------------------CCCcceeEEEEEeCCC--------------
Confidence            999999999999999999999421                          2458999999999743              


Q ss_pred             CccccceeeeceeeecCCCccccHHHHHHHhcCCcCCCCCCCCCCCCcchhhhhccCccccCCCCchhhHHHHHhhhccc
Q 035508          278 CWDKISFINRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEEILYEHVTRN  357 (379)
Q Consensus       278 ~~~~~~~iQ~pv~p~~~dG~~~TLgdaL~~lLP~lFps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (379)
                          .+++|++|+|.+++|+..||||+|+.+||++|++....                        .             
T Consensus       121 ----~~~iQ~~i~~~~~~g~~~TL~d~L~~~lp~~f~s~~~~------------------------~-------------  159 (197)
T PF04106_consen  121 ----VPVIQPPIPPIKEDGQPQTLGDALSELLPELFPSSDEP------------------------E-------------  159 (197)
T ss_dssp             ------EE----B----TT---BTGGGHHHHHTTT--T------------------------------------------
T ss_pred             ----cceEecccccccCCCCcCcHHHHHHHhChhhcccccCc------------------------c-------------
Confidence                26899999999999999999999999999999654220                        1             


Q ss_pred             cceeeEEEeecccCCCCCCCCC
Q 035508          358 AEIKLVRIQGIEPKLEIPFSWV  379 (379)
Q Consensus       358 ~~~~~v~~qGIe~~l~tPl~W~  379 (379)
                        ...|+||||++|+||||+||
T Consensus       160 --~~~~iihGI~ipldtpl~~l  179 (197)
T PF04106_consen  160 --LARVIIHGIEIPLDTPLQWL  179 (197)
T ss_dssp             ---EEEEETTEEE-TTSBHHHH
T ss_pred             --ccEEEEeCeeCCCCCcHHHH
Confidence              22799999999999999996

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	379
4gdk_B	275	Crystal Structure Of Human Atg12~atg5 Conjugate In		2e-23
3vqi_A	274	Crystal Structure Of Kluyveromyces Marxianus Atg5 L		5e-12
2dym_A	297	The Crystal Structure Of Saccharomyces Cerevisiae A		2e-08
3w1s_A	284	Crystal Structure Of Saccharomyces Cerevisiae Atg12		2e-08

>pdb|4GDK|B Chain B, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex With An N- Terminal Fragment Of Atg16l1 Length = 275

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 130/326 (39%), Gaps = 83/326 (25%)
Query: 55  VWEGAIPLQIHLHESEVTTXXXXXXXXXXXXRIGYLPLLVGLIKPYFGSSL-PPGVDTIW 113
           VW G IP    L++ E+T             R+ YL L+   +K +F   +    +  IW
Sbjct: 11  VWFGRIPTCFTLYQDEIT-EREAEPYYLLLPRVSYLTLVTDKVKKHFQKVMRQEDISEIW 69
Query: 114 FEYKGLPLKWYTPTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSL 173
           FEY+G PLKW+ P G+LFDLL +    PWN+TVHF+ +P   L+ C  +D+++  F++ +
Sbjct: 70  FEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCM 129
Query: 174 KEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLNSS 233
           KEA   +    + +  M + D  +LW  + N   + +  ++ KL       +Y  + N  
Sbjct: 130 KEAD-ALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLM------EYPAEENGF 182
Query: 234 SKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFINRPVEVRT 293
                               IP R+Y  +    F              I  + RPV    
Sbjct: 183 R------------------YIPFRIYQTTTERPF--------------IQKLFRPVAA-- 208
Query: 294 EEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEEILYEH 353
            +G+  TL D +K + P                      +  ED G  KN          
Sbjct: 209 -DGQLHTLGDLLKEVCPS--------------------AIDPED-GEKKNQ--------- 237
Query: 354 VTRNAEIKLVRIQGIEPKLEIPFSWV 379
                    V I GIEP LE P  W+
Sbjct: 238 ---------VMIHGIEPMLETPLQWL 254

>pdb|3VQI|A Chain A, Crystal Structure Of Kluyveromyces Marxianus Atg5 Length = 274

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 37/198 (18%)
Query: 48  HME-ARKYVWEGAIPLQIHLHESEVTTXXXXXXXXXXXXRIGYLPLLVGLIKPYFGSSLP 106
           HME  R+ VW G I +++ + ++ V                     +V L   Y G  LP
Sbjct: 3   HMEELRERVWNGTINVEVVVSDAIVVPNTTLADKSCH---------IVMLRDAYLGFYLP 53
Query: 107 PGV----DTI-----------WFEYKGLPLKWYTPTGVLFDLLCAEPERP---------- 141
             V    DTI           WFEY G  + W  P GVLFDLL  + ++           
Sbjct: 54  TVVRKLADTIKVPYESDYRNWWFEYNGEGVPWEYPCGVLFDLLNKKRKKQGNELDDTSLQ 113
Query: 142 -WNLTV-HFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELW 199
            W L + H   YP  +L   +G   +K  + +  K+A +I+NG+ K +M++S  D    W
Sbjct: 114 MWELQLCHGDKYPRGILPLVDGHSQIKDYWRHQWKQACFILNGSAKRIMSLSIPDFENFW 173
Query: 200 RSVMNGNLEAYLRVSSKL 217
            S+++ N   ++ V SKL
Sbjct: 174 VSILSRNRSDFMAVRSKL 191

>pdb|2DYM|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg5- Atg16(1-46) Complex Length = 297

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 26/152 (17%)
Query: 87  IGYLPLLVGLIKPYFGSSLPPGVDT---IWFEYKGLPLKWYTPTGVLFDLLCAEPERPWN 143
           + Y+PL+   IK +   S  P  D+    WFE+   P+ W  P GVLFD L  +      
Sbjct: 49  VNYMPLIWNKIKSFL--SFDPLTDSEKYFWFEHNKTPIPWNYPVGVLFDCLAGKSA---T 103
Query: 144 LTVHFRGYPVHVL-----------------IPCEGEDSVKWSF-INSLKEAAYIINGNCK 185
            T  F      VL                 IP     +    F  +  K+  +I+NG+ K
Sbjct: 104 FTTSFENQVKDVLTFLRIHLVMGDSLPPTIIPIASSKTQAEKFWFHQWKQVCFILNGSSK 163
Query: 186 NVMNMSQSDQVELWRSVMNGNLEAYLRVSSKL 217
            +M++S ++  + W SV+  N + ++ +S+K+
Sbjct: 164 AIMSLSVNEARKFWGSVITRNFQDFIEISNKI 195

>pdb|3W1S|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg12-Atg5 Conjugate Bound To The N-Terminal Domain Of Atg16 Length = 284

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 26/152 (17%)
Query: 87  IGYLPLLVGLIKPYFGSSLPPGVDT---IWFEYKGLPLKWYTPTGVLFDLLCAEPERPWN 143
           + Y+PL+   IK +   S  P  D+    WFE+   P+ W  P GVLFD L  +      
Sbjct: 46  VNYMPLIWNKIKSFL--SFDPLTDSEKYFWFEHNKTPIPWNYPVGVLFDCLAGKSA---T 100
Query: 144 LTVHFRGYPVHVL-----------------IPCEGEDSVKWSF-INSLKEAAYIINGNCK 185
            T  F      VL                 IP     +    F  +  K+  +I+NG+ K
Sbjct: 101 FTTSFENQVKDVLTFLRIHLVMGDSLPPTIIPIASSKTQAEKFWFHQWKQVCFILNGSSK 160
Query: 186 NVMNMSQSDQVELWRSVMNGNLEAYLRVSSKL 217
            +M++S ++  + W SV+  N + ++ +S+K+
Sbjct: 161 AIMSLSVNEARKFWGSVITRNFQDFIEISNKI 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
3vqi_A	274	ATG5; autophagy, E3-like, ubiquitin-fold, PRE-auto	2e-60
2dyo_A	297	Autophagy protein 5; ubiquitin-fold, herix-bundle,	7e-52

>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus} Length = 274

 Score =  195 bits (497), Expect = 2e-60
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 18/186 (9%)

Query: 50  EARKYVWEGAIPLQIHLHESEVT--TLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPP 107
           E R+ VW G I +++ + ++ V   T        I+  R  YL   +  +      ++  
Sbjct: 6   ELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKV 65

Query: 108 GVD----TIWFEYKGLPLKWYTPTGVLFDLLCAEPER-----------PWNLTV-HFRGY 151
             +      WFEY G  + W  P GVLFDLL  + ++            W L + H   Y
Sbjct: 66  PYESDYRNWWFEYNGEGVPWEYPCGVLFDLLNKKRKKQGNELDDTSLQMWELQLCHGDKY 125

Query: 152 PVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNLEAYL 211
           P  +L   +G   +K  + +  K+A +I+NG+ K +M++S  D    W S+++ N   ++
Sbjct: 126 PRGILPLVDGHSQIKDYWRHQWKQACFILNGSAKRIMSLSIPDFENFWVSILSRNRSDFM 185

Query: 212 RVSSKL 217
            V SKL
Sbjct: 186 AVRSKL 191

>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A Length = 297

 Score =  174 bits (441), Expect = 7e-52
 Identities = 55/352 (15%), Positives = 101/352 (28%), Gaps = 110/352 (31%)

Query: 50  EARKYVWEGAIPLQIHLHESEVTTLPPPPPA--LILAPRIGYLPLLVGLIKPYFGSSL-- 105
           + ++ +W G + + + +  S +    P   A   I  PR  YL   + LI     S L  
Sbjct: 6   DIKQLLWNGELNVLVSIDPSFLMKGSPREIAVLRIRVPRETYLVNYMPLIWNKIKSFLSF 65

Query: 106 ---PPGVDTIWFEYKGLPLKWYTPTGVLFDLLCAEP------------ERPWNLTVHFR- 149
                     WFE+   P+ W  P GVLFD L  +             +    L +H   
Sbjct: 66  DPLTDSEKYFWFEHNKTPIPWNYPVGVLFDCLAGKSATFTTSFENQVKDVLTFLRIHLVM 125

Query: 150 --GYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNGNL 207
               P  ++     +   +  + +  K+  +I+NG+ K +M++S ++  + W SV+  N 
Sbjct: 126 GDSLPPTIIPIASSKTQAEKFWFHQWKQVCFILNGSSKAIMSLSVNEARKFWGSVITRNF 185

Query: 208 EAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDF 267
           + ++ +S+K+                                    IP+ +         
Sbjct: 186 QDFIEISNKISSSRPR-----------------------------HIPLIIQ-------- 208

Query: 268 DDLEDAPDIDCWDKISFINRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLE 327
                                    +  G   TL+D    +L                  
Sbjct: 209 ----------TSRTSGTFRISQPTISMTGVNPTLKDIEGDILDVKEGI------------ 246

Query: 328 DEEMNLSSEDAGSNKNTEVEEILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV 379
                                        N    +V  QGIE    +    +
Sbjct: 247 -----------------------------NGNDVMVICQGIEIPWHMLLYDL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
4gdk_B	275	Autophagy protein 5; protein-protein conjugate, pr	100.0
3vqi_A	274	ATG5; autophagy, E3-like, ubiquitin-fold, PRE-auto	100.0
2dyo_A	297	Autophagy protein 5; ubiquitin-fold, herix-bundle,	100.0

>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B

Probab=100.00  E-value=1.2e-84  Score=627.21  Aligned_cols=251  Identities=31%  Similarity=0.612  Sum_probs=225.9

Q ss_pred             ccHHHHHHHhcCcccEEEEeccCCCCCCCCCCCEEEEecccchhHHHHHHHHHhhcccCCC-CCCceeEEeCCeecccCC
Q 035508           47 MHMEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPP-GVDTIWFEYKGLPLKWYT  125 (379)
Q Consensus        47 m~~eirr~vWeG~IPV~I~L~~~e~~~~~~p~p~y~~vPR~SYLpL~lp~I~~~F~~~l~~-~~~~~WFE~egvPLKWh~  125 (379)
                      ||.||+|+||+|+|||||+|+++|++.. ++.|||+++||+||||+++|+|++||.+++.. ..+++||||||+||||||
T Consensus         3 ~d~ei~r~vW~G~Ipv~i~l~~~e~~~~-~~~p~~~~vPR~sYLpl~~p~i~~~F~~~~~~~~~~~~Wfe~eg~PLkWh~   81 (275)
T 4gdk_B            3 DDKDVLRDVWFGRIPTCFTLYQDEITER-EAEPYYLLLPRVSYLTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWHY   81 (275)
T ss_dssp             CHHHHHHHHHTCEEEEEEEECTTSCCSS-CCCCEEEEEETTSCHHHHCHHHHHHHHTTSCGGGCCCCEEEETTEECCTTS
T ss_pred             chHHHHHHHhCCCceEEEEECccccccC-CCCcEEEEcchhhHHHHHHHHHHHHHHhhccccccCCccEeECCEEecccc
Confidence            4679999999999999999999999765 47899999999999999999999999998864 467999999999999999


Q ss_pred             CceeeeeecCCCCCCCeEEEEEecCCCCcccccCCChhHHHHHHHHHHhhhhhhhcCcchhhhccCHHHHHHHHHHHHcC
Q 035508          126 PTGVLFDLLCAEPERPWNLTVHFRGYPVHVLIPCEGEDSVKWSFINSLKEAAYIINGNCKNVMNMSQSDQVELWRSVMNG  205 (379)
Q Consensus       126 PiGVLyDll~~~~~lPW~LtvHf~~~P~~~Ll~~~~~e~vk~~FmnsLKEAdfIrnGssK~VMsLsk~D~~qLW~sV~~~  205 (379)
                      |||||||+|++++.+||+|||||++||++.|++|++++++|++||||||||||||||+ |+||+|||+||++||+||++|
T Consensus        82 PiGvLyDl~~~~~~lPW~Ltvhf~~~P~~~l~~~~~~~~i~~~fmn~lKEAd~ir~~s-k~im~lsk~d~~~LW~sv~~~  160 (275)
T 4gdk_B           82 PIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCMKEADALKHKS-QVINEMQKKDHKQLWMGLQND  160 (275)
T ss_dssp             CHHHHHHHHHTTSCSSEEEEEECSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTT-TTTTSSCHHHHHHHHHHHHTT
T ss_pred             ccEEEEEecCCCCCCCeEEEEEcCCCCccccccCCcHHHHHHHHHHHHHHHHHHhcCC-HHhhhcCHHHHHHHHHHHHcC
Confidence            9999999999988999999999999999999999999999999999999999999986 999999999999999999999


Q ss_pred             ChHHHHHHHhcccccccccccccccCCCCCccCCCCCccCCCCcccccceeEEEeccCCCCCCCCCCCCCCCCcccccee
Q 035508          206 NLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSEDFDDLEDAPDIDCWDKISFI  285 (379)
Q Consensus       206 dfd~F~~In~KL~~~~~~~~~~~~~~s~~~~~~~s~~~~~~~~~k~r~IPvRIYlp~~~~~~~~~~d~~~~~~~~~~~~i  285 (379)
                      ||++||+||+|||+.+.                        .+..+|+||||||++..++                 .++
T Consensus       161 d~~~F~~in~kL~~~~~------------------------~~~~~r~IPvRiY~~~~~~-----------------~~i  199 (275)
T 4gdk_B          161 RFDQFWAINRKLMEYPA------------------------EENGFRYIPFRIYQTTTER-----------------PFI  199 (275)
T ss_dssp             CHHHHHHHHTGGGCCCT------------------------TSSSCSSCCEEEECTTSSS-----------------SEE
T ss_pred             CHHHHHHHHHhhcCCCC------------------------ccCccccceEEEEecCCCC-----------------Ccc
Confidence            99999999999998531                        1234799999999975431                 489


Q ss_pred             eeceeeecCCCccccHHHHHHHhcCCcCCCCCCCCCCCCcchhhhhccCccccCCCCchhhHHHHHhhhccccceeeEEE
Q 035508          286 NRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTEVEEILYEHVTRNAEIKLVRI  365 (379)
Q Consensus       286 Q~pv~p~~~dG~~~TLgdaL~~lLP~lFps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  365 (379)
                      |++|+|..++|+++||||||+++||++|++++...                                       ..+|++
T Consensus       200 Q~~v~p~~~~g~~~TLg~~L~~~lP~lf~~~~~~~---------------------------------------~~~vii  240 (275)
T 4gdk_B          200 QKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEK---------------------------------------KNQVMI  240 (275)
T ss_dssp             CCCCCSBCTTSCBCBHHHHHHHHCGGGCC---------------------------------------------CEEEEB
T ss_pred             ccCcCCcCCCCCcccHHHHHHHhcccccCCCcccc---------------------------------------cceEEE
Confidence            99999999999999999999999999998652211                                       237999


Q ss_pred             eecccCCCCCCCCC
Q 035508          366 QGIEPKLEIPFSWV  379 (379)
Q Consensus       366 qGIe~~l~tPl~W~  379 (379)
                      |||++|+||||+||
T Consensus       241 hGI~~pl~~pl~~l  254 (275)
T 4gdk_B          241 HGIEPMLETPLQWL  254 (275)
T ss_dssp             TTBCCCTTSBHHHH
T ss_pred             eCCcCCCCCCHHHH
Confidence            99999999999996

>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}

Probab=100.00  E-value=2.2e-80  Score=597.23  Aligned_cols=238  Identities=26%  Similarity=0.466  Sum_probs=210.4

Q ss_pred             CcccHHHHHHHhcCcccEEEEeccCCCCCC--CCCCCEEEEecccchhHHHHHHHHHhhcccCCCC----CCceeEEeCC
Q 035508           45 RNMHMEARKYVWEGAIPLQIHLHESEVTTL--PPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG----VDTIWFEYKG  118 (379)
Q Consensus        45 ~~m~~eirr~vWeG~IPV~I~L~~~e~~~~--~~p~p~y~~vPR~SYLpL~lp~I~~~F~~~l~~~----~~~~WFE~eg  118 (379)
                      |||+ |+||+||+|+|||||+|+++|++..  .++.|||+++||+||||+++|+|++||++++...    .+++||||||
T Consensus         2 ~~~~-ei~~~vW~G~Ipv~i~l~~~e~~~~~~~~~~p~~~~vPR~SYLpl~~p~i~~~F~~~~~~~~~~~~~~~WFe~eg   80 (274)
T 3vqi_A            2 PHME-ELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKVPYESDYRNWWFEYNG   80 (274)
T ss_dssp             --CC-HHHHHHHTCEEEEEEEECTTTBCSSCCTGGGEEEEEEETTSCHHHHHHHHHHHHGGGBCSCCSCSSTTEEEEETT
T ss_pred             CcHH-HHHHHHhCCCceEEEEEChHHhcccCCCCCCcEEEEcchHhHHHHHHHHHHHHHHhhcccccccccCcccEEECC
Confidence            6776 9999999999999999999999765  4689999999999999999999999999987643    4699999999


Q ss_pred             eecccCCCceeeeeecCCCC-----------CCCeEEEEEecC-CCCccccc-CCChhHHHHHHHHHHhhhhhhhcCcch
Q 035508          119 LPLKWYTPTGVLFDLLCAEP-----------ERPWNLTVHFRG-YPVHVLIP-CEGEDSVKWSFINSLKEAAYIINGNCK  185 (379)
Q Consensus       119 vPLKWh~PiGVLyDll~~~~-----------~lPW~LtvHf~~-~P~~~Ll~-~~~~e~vk~~FmnsLKEAdfIrnGssK  185 (379)
                      +|||||||||||||+|++..           .+||+|||||++ ||++ ++| |++++++|++|||||||||||||||+|
T Consensus        81 ~PLkWh~PiGvLyDl~~~~~~~~~~~~~~~~~lpW~Ltvh~~~~~P~~-li~~~~~~~~i~~~fmn~lKEAdfir~Gsak  159 (274)
T 3vqi_A           81 EGVPWEYPCGVLFDLLNKKRKKQGNELDDTSLQMWELQLCHGDKYPRG-ILPLVDGHSQIKDYWRHQWKQACFILNGSAK  159 (274)
T ss_dssp             EECCTTSCHHHHHHHHCC--------------CEEEEEEEECSSCCTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHSBSC
T ss_pred             EeccccccceEEEEeccCCCcccccccccCCCCCEEEEEEeCCCCCcc-ccccCCcHHHHHHHHHHHHHHHHHHHhCChH
Confidence            99999999999999998754           579999999998 9999 777 799999999999999999999999999


Q ss_pred             hhhccCHHHHHHHHHHHHcCChHHHHHHHhcccccccccccccccCCCCCccCCCCCccCCCCcccccceeEEEeccCCC
Q 035508          186 NVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVSE  265 (379)
Q Consensus       186 ~VMsLsk~D~~qLW~sV~~~dfd~F~~In~KL~~~~~~~~~~~~~~s~~~~~~~s~~~~~~~~~k~r~IPvRIYlp~~~~  265 (379)
                      +||+||++|+++||+||++|||++||+||+|||++                            .++|+||||||++..  
T Consensus       160 ~im~lsk~d~~~LW~sv~~~~~~~F~~i~~kL~~~----------------------------~~~r~IPiRIy~~~~--  209 (274)
T 3vqi_A          160 RIMSLSIPDFENFWVSILSRNRSDFMAVRSKLFSM----------------------------NKAKSLPVRVWTSNY--  209 (274)
T ss_dssp             TTTTSCHHHHHHHHHHHHHTCHHHHHHHHHTTCCG----------------------------GGCSBCCEEEECTTS--
T ss_pred             HhhccCHHHHHHHHHHHHHhcHHHHHHHHHHhcCC----------------------------CcccceeEEEEcCCC--
Confidence            99999999999999999999999999999999952                            137999999999632  


Q ss_pred             CCCCCCCCCCCCCccccceeeeceeeecCCCccccHHHHHHHhcCCcCCCCCCCCCCCCcchhhhhccCccccCCCCchh
Q 035508          266 DFDDLEDAPDIDCWDKISFINRPVEVRTEEGKCFTLRDAIKTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNKNTE  345 (379)
Q Consensus       266 ~~~~~~d~~~~~~~~~~~~iQ~pv~p~~~dG~~~TLgdaL~~lLP~lFps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (379)
                                       +++|.+|++.+   +.+||||+|+++||.+|.      .                        
T Consensus       210 -----------------~~iQ~~i~~~~---~~~TLg~~L~~~lp~l~~------~------------------------  239 (274)
T 3vqi_A          210 -----------------AVLQPTVPVTD---KELSVAELLDSIKLSSDG------V------------------------  239 (274)
T ss_dssp             -----------------CEECCCCBCC------CBHHHHHHTTTCCC--------C------------------------
T ss_pred             -----------------CeEecccCCCC---ccccHHHHHHHhcccccc------c------------------------
Confidence                             58999999853   889999999999998871      1                        


Q ss_pred             hHHHHHhhhccccceeeEEEeecccCCCCCCCCC
Q 035508          346 VEEILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV  379 (379)
Q Consensus       346 ~~~~~~~~~~~~~~~~~v~~qGIe~~l~tPl~W~  379 (379)
                                     ..|++|||++|++||++||
T Consensus       240 ---------------~~~iihGi~vp~~~pl~~l  258 (274)
T 3vqi_A          240 ---------------KSVIIQGIDVSIEDNIFEL  258 (274)
T ss_dssp             ---------------CEEEETTEEEETTSBHHHH
T ss_pred             ---------------eEEEEeCccCCCCCcHHHH
Confidence                           1699999999999999996

>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A

Probab=100.00  E-value=7.1e-78  Score=585.49  Aligned_cols=241  Identities=22%  Similarity=0.361  Sum_probs=207.2

Q ss_pred             cHHHHHHHhcCcccEEEEeccCCCCCCCCCCC---EEEEecccchhHHHHHHHHHhhcccCCCC-----CCceeEEeCCe
Q 035508           48 HMEARKYVWEGAIPLQIHLHESEVTTLPPPPP---ALILAPRIGYLPLLVGLIKPYFGSSLPPG-----VDTIWFEYKGL  119 (379)
Q Consensus        48 ~~eirr~vWeG~IPV~I~L~~~e~~~~~~p~p---~y~~vPR~SYLpL~lp~I~~~F~~~l~~~-----~~~~WFE~egv  119 (379)
                      +.||||+||+|+|||||+|++++++ ..+|.|   ||+++||+||||+++|+|++||++++...     ...+||||||+
T Consensus         4 ~~~i~r~vW~G~IPv~i~L~~~~~~-~~~p~p~~~~~~~vPR~SYLpl~~p~v~~~F~~~l~~~~~~~~~~~~WFe~eg~   82 (297)
T 2dyo_A            4 MNDIKQLLWNGELNVLVSIDPSFLM-KGSPREIAVLRIRVPRETYLVNYMPLIWNKIKSFLSFDPLTDSEKYFWFEHNKT   82 (297)
T ss_dssp             HHHHHHHHHTCEEEEEEEECGGGBC-TTCCGGGGEEEEEEESSSCGGGGHHHHHHHHGGGBSSCC----CCEEEEEETTE
T ss_pred             HHHHHHHHHCCCceEEEEECccccc-CCCCCCcceEEEEcchHhHHHHHHHHHHHHHHhhccccccccccCccceeECCE
Confidence            4699999999999999999976665 457888   99999999999999999999999987421     23579999999


Q ss_pred             ecccCCCceeeeeecCC-CC------------C-CCeEEEEEecCCCCcccccC-CChhHHHHHHHHHHhhhhhhhcCcc
Q 035508          120 PLKWYTPTGVLFDLLCA-EP------------E-RPWNLTVHFRGYPVHVLIPC-EGEDSVKWSFINSLKEAAYIINGNC  184 (379)
Q Consensus       120 PLKWh~PiGVLyDll~~-~~------------~-lPW~LtvHf~~~P~~~Ll~~-~~~e~vk~~FmnsLKEAdfIrnGss  184 (379)
                      |||||||||||||+|++ ++            . +||+|||||++||++.|+|| +++++||++|||+||||||||||++
T Consensus        83 PLkWh~PiGvLyDl~~~~~p~~~~~~~~~~~~~~lPW~Ltvhf~~~P~~~li~~~~~~~~i~~~f~n~lKEAdfir~G~~  162 (297)
T 2dyo_A           83 PIPWNYPVGVLFDCLAGKSATFTTSFENQVKDVLTFLRIHLVMGDSLPPTIIPIASSKTQAEKFWFHQWKQVCFILNGSS  162 (297)
T ss_dssp             EECTTSCHHHHHHHHHGGGC---------CCCCCCEEEEEEEEESSCCTTCCCCCSCTTHHHHHHHHHHHHHHHHHHSSS
T ss_pred             EccccccceEEEEeccCCCcccccccccccccCCCCEEEEEEeCCCCccceeecCChHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999985 22            2 69999999999999999999 8999999999999999999999999


Q ss_pred             hhhhccCHHHHHHHHHHHHcCChHHHHHHHhcccccccccccccccCCCCCccCCCCCccCCCCcccccceeEEEeccCC
Q 035508          185 KNVMNMSQSDQVELWRSVMNGNLEAYLRVSSKLKLITVEDDYTVKLNSSSKSQQGTGETDFAGQVKTGRIPVRLYVWSVS  264 (379)
Q Consensus       185 K~VMsLsk~D~~qLW~sV~~~dfd~F~~In~KL~~~~~~~~~~~~~~s~~~~~~~s~~~~~~~~~k~r~IPvRIYlp~~~  264 (379)
                      |+||+|||+|+++||+||++|||++||+||+|||+.+                             +|+||||||++...
T Consensus       163 k~im~Lsk~d~~~LW~~v~~~d~~~F~~i~~kL~~~~-----------------------------~r~IPvRIy~~~~~  213 (297)
T 2dyo_A          163 KAIMSLSVNEARKFWGSVITRNFQDFIEISNKISSSR-----------------------------PRHIPLIIQTSRTS  213 (297)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHTCHHHHHHHHHHHCCSC-----------------------------CSBCCEEEECCSSS
T ss_pred             HHhhhcCHHHHHHHHHHHHhhhHHHHHHHHHhccCCC-----------------------------cceeeEEEEecCCC
Confidence            9999999999999999999999999999999999742                             69999999997532


Q ss_pred             CCCCCCCCCCCCCCccccceeeeceeeecCCCccccHHHHH--HHhcCCcCCCCCCCCCCCCcchhhhhccCccccCCCC
Q 035508          265 EDFDDLEDAPDIDCWDKISFINRPVEVRTEEGKCFTLRDAI--KTLLPEYFTDKPLFNDESPKLEDEEMNLSSEDAGSNK  342 (379)
Q Consensus       265 ~~~~~~~d~~~~~~~~~~~~iQ~pv~p~~~dG~~~TLgdaL--~~lLP~lFps~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (379)
                      +               ..+++|..+++   .++.+||||||  +.+||++|++++.                        
T Consensus       214 ~---------------~~~~iqp~~~~---~~~~~TLgd~L~~~~~lp~lf~~~~~------------------------  251 (297)
T 2dyo_A          214 G---------------TFRISQPTISM---TGVNPTLKDIEGDILDVKEGINGNDV------------------------  251 (297)
T ss_dssp             S---------------SCCEECCCCBC---TTCCCBTGGGHHHHSCTTTC----CE------------------------
T ss_pred             C---------------ceeeeecccCC---CCCCcCHHHHHhhhhhccccCCCCCC------------------------
Confidence            1               12467744432   33455999999  9999999976411                        


Q ss_pred             chhhHHHHHhhhccccceeeEEEeecccCCCCCCCCC
Q 035508          343 NTEVEEILYEHVTRNAEIKLVRIQGIEPKLEIPFSWV  379 (379)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~v~~qGIe~~l~tPl~W~  379 (379)
                                         .|+||||++||+|||+||
T Consensus       252 -------------------~viihGI~vpl~~pl~wl  269 (297)
T 2dyo_A          252 -------------------MVICQGIEIPWHMLLYDL  269 (297)
T ss_dssp             -------------------EEEETTEEECTTCBHHHH
T ss_pred             -------------------eEEEeCccCCCCCcHHHH
Confidence                               599999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00