Citrus Sinensis ID: 035899

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MKENDEELYIFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEEEKRRLK
Secondary Structure (PSIPRED)
cccccccEEEEEccccccccccccccccccEEEEcccccccccEEEEEcccccEEEEEEcccEEEEEccccccccccccccccccEEcccccccEEEEcccccccEEEEccccEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccccccEEEEEccccccccccccccccccEEEEEEEEccEEEEEEEccEEEEEEcccccccccccccccEccEEEccccccEEEEEEcccEEEEEEccccccccccEEEEcccccccc
Coil and Loop (DISEMBL)
MKENDEELYIFSLMAEEALVVRLFnsenspnwnqlANLSvskrfsnssscglfhsglvvngklwiwgkgdggrlgfghedaafvptlnpylddhVRCIALGGVHSIALTSLAVEECNRCLILGEEEKRRLK
Flexible Loop (DISEMBL)
MKENDEELYIFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRclilgeeekrrlk
Low Complexity Region (SEG)
MKENDEELYIFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEEEKRRLK
Disordered region (IsUnstruct)
*******LYIFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILG********
Disordered Region (DISOPRED)
MKENDEELYIFSLMAEEALVVRLFNSENSPNWN*LANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEE*KR***
Disordered Region (DISEMBL)
MKENDEELYIFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEEEKRRLK
Disordered Region (DISPRO)
****DEELYIFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEEE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKENDEELYIFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEEEKRRLK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q9VR91	4912	Probable E3 ubiquitin-pro	no	no	0.488	0.013	0.441	0.0001
Q15751	4861	Probable E3 ubiquitin-pro	yes	no	0.458	0.012	0.403	0.0002
Q9UII4	1024	E3 ISG15--protein ligase	no	no	0.656	0.083	0.351	0.0003
Q4U2R1	4836	E3 ubiquitin-protein liga	no	no	0.358	0.009	0.462	0.0007
O95714	4834	E3 ubiquitin-protein liga	no	no	0.358	0.009	0.462	0.0007

>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 47  SSSCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIALGG-- 102
           S  CG  +S  +   G L  WG+G   RLG G+ D   +PTL   L DH V  +ALG   
Sbjct: 672 SVYCGCSYSAAITCGGNLLTWGRGTYARLGHGNSDDRSLPTLVVALSDHMVVDVALGSGD 731

Query: 103 VHSIALTS 110
            HS+ALTS
Sbjct: 732 AHSLALTS 739

Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 49  SCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIA 107
           S G  HS  V  +G+L+ WG+GD GRLG G  ++  +PTL   + + V  ++ G  H+IA
Sbjct: 517 SAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN-VGEVSCGSSHTIA 575

Query: 108 LT 109
           L+
Sbjct: 576 LS 577

Involved in membrane trafficking via some guanine nucleotide exchange factor (GEF) activity and its ability to bind clathrin. Acts as a GEF for Arf and Rab, by exchanging bound GDP for free GTP. Binds phosphatidylinositol 4,5-bisphosphate, which is required for GEF activity. May also act as a E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 20  VVRLFNSENSPNW-NQLANLSVSKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFG 77
           V R F S  +P     LA + +++      S G  HS  L ++G ++ WGK + G+LG G
Sbjct: 172 VGRKFPSTTTPQIVEHLAGVPLAQ-----ISAGEAHSMALSMSGNIYSWGKNECGQLGLG 226

Query: 78  HEDAAFVPTLNPYLDDH-VRCIALGGVHSIALTS 110
           H ++   P+L   LD+  V  +A GG HS  LT 
Sbjct: 227 HTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQ 260

Major E3 ligase for ISG15 conjugation. Acts as a positive regulator of innate antiviral response in cells induced by interferon. Makes part of the ISGylation machinery that recognizes target proteins in a broad and relatively non-specific manner. Catalyzes ISGylation of IRF3 which results in sustained activation, it attenuates IRF3-PIN1 interaction, which antagonizes IRF3 ubiquitination and degradation, and boosts the antiviral response. Catalyzes ISGylation of influenza A viral NS1 which attenuates virulence; ISGylated NS1 fails to form homodimers and thus to interact with its RNA targets. Catalyzes ISGylation of papillomavirus type 16 L1 protein which results in dominant-negative effect on virus infectivity. Physically associated with polyribosomes, broadly modifies newly synthesized proteins in a cotranslational manner. In an interferon-stimulated cell, newly translated viral proteins are primary targets of ISG15.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 60  NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD----HVRCIALGGVHSIALT 109
           NG++W WG GD G+LG G  D    P L   L D     VRC   G   SIALT
Sbjct: 624 NGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRC---GSQFSIALT 674

E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 60  NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD----HVRCIALGGVHSIALT 109
           NG++W WG GD G+LG G  D    P L   L D     VRC   G   SIALT
Sbjct: 623 NGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRC---GSQFSIALT 673

E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
255539128	450	guanine nucleotide exchange factor P532,	0.603	0.175	0.625	2e-22
42568678	445	regulator of chromosome condensation rep	0.526	0.155	0.671	1e-21
297797029	445	regulator of chromosome condensation fam	0.526	0.155	0.671	1e-21
225464728	489	PREDICTED: probable E3 ubiquitin-protein	0.480	0.128	0.765	6e-21
190610056	376	At5g60870 [Arabidopsis thaliana]	0.526	0.183	0.671	2e-20
42573750	383	regulator of chromosome condensation rep	0.526	0.180	0.671	2e-20
356524449	444	PREDICTED: probable E3 ubiquitin-protein	0.793	0.234	0.509	4e-20
449518441	463	PREDICTED: E3 ubiquitin-protein ligase H	0.480	0.136	0.75	7e-20
449456530	463	PREDICTED: E3 ubiquitin-protein ligase H	0.480	0.136	0.75	7e-20
124359876	444	Regulator of chromosome condensation/bet	0.793	0.234	0.504	2e-19

>gi|255539128|ref|XP_002510629.1| guanine nucleotide exchange factor P532, putative [Ricinus communis] gi|223551330|gb|EEF52816.1| guanine nucleotide exchange factor P532, putative [Ricinus communis]

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/80 (62%), Positives = 61/80 (76%), Gaps = 1/80 (1%)

Query: 33  NQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLD 92
           NQ + ++  +      SCGLFHS L+V+G +WIWGKGDGGRLGFGHE+  FVPTLNP LD
Sbjct: 97  NQNSTITKQEAIEVGISCGLFHSALLVDGNIWIWGKGDGGRLGFGHENPVFVPTLNPNLD 156

Query: 93  DHVRCIALGGVHSIALTSLA 112
              +C+ALGGVHS+ALTSL 
Sbjct: 157 P-AKCVALGGVHSVALTSLG 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42568678|ref|NP_200895.2| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|10176914|dbj|BAB10107.1| unnamed protein product [Arabidopsis thaliana] gi|332010005|gb|AED97388.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana]

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/70 (67%), Positives = 56/70 (80%), Gaps = 1/70 (1%)

Query: 41  SKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIA 99
           S  F    SCGLFHSGL ++G LWIWGKGDGGRLGFG E++ FVP LNP  ++H +RCIA
Sbjct: 99  SSSFRIGISCGLFHSGLTIDGDLWIWGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIA 158

Query: 100 LGGVHSIALT 109
           LGG+HS+ALT
Sbjct: 159 LGGLHSVALT 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797029|ref|XP_002866399.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297312234|gb|EFH42658.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/70 (67%), Positives = 56/70 (80%), Gaps = 1/70 (1%)

Query: 41  SKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIA 99
           S  F    SCGLFHSGL ++G LWIWGKGDGGRLGFG E++ FVP LNP  ++H +RCIA
Sbjct: 99  SSSFPIGISCGLFHSGLTIDGDLWIWGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIA 158

Query: 100 LGGVHSIALT 109
           LGG+HS+ALT
Sbjct: 159 LGGLHSVALT 168

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464728|ref|XP_002264236.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera]

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/64 (76%), Positives = 54/64 (84%), Gaps = 1/64 (1%)

Query: 49  SCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIAL 108
           SCGLFHS LVV+GKLWIWGKGDGGRLGFG E  AF+PTLNP LD  +R  ALGGVHS+AL
Sbjct: 97  SCGLFHSSLVVDGKLWIWGKGDGGRLGFGQEYPAFLPTLNPNLDS-IRSTALGGVHSVAL 155

Query: 109 TSLA 112
           +SL 
Sbjct: 156 SSLG 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190610056|gb|ACE79739.1| At5g60870 [Arabidopsis thaliana]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 56/70 (80%), Gaps = 1/70 (1%)

Query: 41  SKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIA 99
           S  F    SCGLFHSGL ++G LWIWGKGDGGRLGFG E++ FVP LNP  ++H +RCIA
Sbjct: 30  SSSFRIGISCGLFHSGLTIDGDLWIWGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIA 89

Query: 100 LGGVHSIALT 109
           LGG+HS+ALT
Sbjct: 90  LGGLHSVALT 99

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573750|ref|NP_974971.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|332010006|gb|AED97389.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 56/70 (80%), Gaps = 1/70 (1%)

Query: 41  SKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIA 99
           S  F    SCGLFHSGL ++G LWIWGKGDGGRLGFG E++ FVP LNP  ++H +RCIA
Sbjct: 30  SSSFRIGISCGLFHSGLTIDGDLWIWGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIA 89

Query: 100 LGGVHSIALT 109
           LGG+HS+ALT
Sbjct: 90  LGGLHSVALT 99

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524449|ref|XP_003530841.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max]

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 70/106 (66%), Gaps = 2/106 (1%)

Query: 6   EELYIF-SLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLW 64
           EE  ++ S +A  A+    F    +P   +L      +      SCGLFHS L+V+G LW
Sbjct: 63  EETRLYPSPVANLAVPKSSFALSQTPGRRRLLPSPPKRALEVGLSCGLFHSSLIVDGALW 122

Query: 65  IWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTS 110
           IWGKGDGGRLGFGHE+  FVPTLNP+LD+ +  +ALGG+HS+ALTS
Sbjct: 123 IWGKGDGGRLGFGHENPLFVPTLNPHLDN-LLSVALGGLHSVALTS 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518441|ref|XP_004166250.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 55/64 (85%), Gaps = 1/64 (1%)

Query: 49  SCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIAL 108
           SCGLFHS L+VNGK+WIWGKGDGGRLGFGHE+  FVPTLN  L+  VRCIALGG+HS+AL
Sbjct: 125 SCGLFHSSLLVNGKVWIWGKGDGGRLGFGHENPVFVPTLNSRLES-VRCIALGGLHSVAL 183

Query: 109 TSLA 112
            +L 
Sbjct: 184 NALG 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456530|ref|XP_004146002.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 55/64 (85%), Gaps = 1/64 (1%)

Query: 49  SCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIAL 108
           SCGLFHS L+VNGK+WIWGKGDGGRLGFGHE+  FVPTLN  L+  VRCIALGG+HS+AL
Sbjct: 125 SCGLFHSSLLVNGKVWIWGKGDGGRLGFGHENPVFVPTLNSRLES-VRCIALGGLHSVAL 183

Query: 109 TSLA 112
            +L 
Sbjct: 184 NALG 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359876|gb|ABN06170.1| Regulator of chromosome condensation/beta-lactamase-inhibitor protein II [Medicago truncatula]

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 6   EELYIFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWI 65
           EE  ++       L+   F   N+P        S +K      SCGLFHS LVV+G LW+
Sbjct: 64  EETRLYPSPVTNLLLAPKFTLFNTPGLLPGPEGSNNKGVEVGISCGLFHSCLVVDGGLWV 123

Query: 66  WGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTS 110
           WGKGDGGRLG GHE + FVPTLNP+L++ V+ +ALGG+HS+ALTS
Sbjct: 124 WGKGDGGRLGLGHESSMFVPTLNPHLEN-VKSVALGGLHSVALTS 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
TAIR|locus:2159295	445	RUG3 "RCC1/UVR8/GEF-like 3" [A	0.664	0.195	0.577	5.5e-23
ZFIN|ZDB-GENE-081015-2	1413	rpgrb "retinitis pigmentosa GT	0.595	0.055	0.385	9.6e-07
TAIR|locus:505006603	1075	AT5G12350 "AT5G12350" [Arabido	0.473	0.057	0.446	1.5e-06
TAIR|locus:2025277	1103	PRAF1 "AT1G76950" [Arabidopsis	0.679	0.080	0.326	4e-06
TAIR|locus:504956339	434	RUG1 "AT5G08710" [Arabidopsis	0.465	0.140	0.4	8.4e-06
ZFIN|ZDB-GENE-090313-139	1046	herc3 "hect domain and RLD 3"	0.458	0.057	0.461	1e-05
TAIR|locus:2146142	396	AT5G16040 "AT5G16040" [Arabido	0.465	0.154	0.369	1.5e-05
TAIR|locus:2144291	553	AT5G11580 "AT5G11580" [Arabido	0.358	0.084	0.490	2e-05
TAIR|locus:2076889	393	AT3G02510 "AT3G02510" [Arabido	0.465	0.155	0.369	3.2e-05
UNIPROTKB|Q9UII4	1024	HERC5 "E3 ISG15--protein ligas	0.465	0.059	0.412	3.3e-05

TAIR|locus:2159295 RUG3 "RCC1/UVR8/GEF-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 5.5e-23, P = 5.5e-23
 Identities = 52/90 (57%), Positives = 64/90 (71%)

Query:    23 LFNSENSPNWNQLANL--SVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHED 80
             LF S+ S +  Q      + S  F    SCGLFHSGL ++G LWIWGKGDGGRLGFG E+
Sbjct:    79 LFRSDQSFSLAQTPGRIDADSSSFRIGISCGLFHSGLTIDGDLWIWGKGDGGRLGFGQEN 138

Query:    81 AAFVPTLNPYLDDH-VRCIALGGVHSIALT 109
             + FVP LNP  ++H +RCIALGG+HS+ALT
Sbjct:   139 SVFVPNLNPLFEEHSIRCIALGGLHSVALT 168

GO:0005737 "cytoplasm" evidence=ISM

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0008380 "RNA splicing" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

ZFIN|ZDB-GENE-081015-2 rpgrb "retinitis pigmentosa GTPase regulator b" [Danio rerio (taxid:7955)]

 Score = 127 (49.8 bits), Expect = 9.6e-07, P = 9.6e-07
 Identities = 32/83 (38%), Positives = 46/83 (55%)

Query:    48 SSCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAA--FVPTLNP-YLDDHVRCIALGGV 103
             ++CG  H+ L+  NG L+ +G G  G+LG G E+    F PTL P +LD HV  +  GG 
Sbjct:   301 AACGENHTALITDNGLLYTFGDGRHGKLGLGEENFTNQFKPTLCPRFLDYHVHSVTCGGC 360

Query:   104 HSIALTSLAVEECNRCLILGEEE 126
             H + L     E  +  LIL E++
Sbjct:   361 HMLVLAKPRTERPDD-LILEEDD 382

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0010842 "retina layer formation" evidence=IMP

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0007018 "microtubule-based movement" evidence=IMP

TAIR|locus:505006603 AT5G12350 "AT5G12350" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query:    49 SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPT-LNPYLDD-HVRCIALGGVHS 105
             +CG FHS  + ++G L+ WGKGD G LG G+E + +VP  +N  L+  HV  IA G  H+
Sbjct:   366 ACGEFHSCAVTLSGDLYTWGKGDFGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACGPYHT 425

Query:   106 IALTS 110
               +TS
Sbjct:   426 AVVTS 430

GO:0003682 "chromatin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2025277 PRAF1 "AT1G76950" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 32/98 (32%), Positives = 48/98 (48%)

Query:    40 VSKRFSNSSSCGLFH-SGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRC 97
             ++  F    SCG +H + L    +++ WGKG  GRLG G  +   VPT+   L D HV+ 
Sbjct:   554 LASEFVEEISCGAYHVAALTSRNEVYTWGKGANGRLGHGDLEDRKVPTIVEALKDRHVKY 613

Query:    98 IALGGVHSIAL------TSLAVEECNRC-LILGEEEKR 128
             IA G  ++ A+      +     +C+ C L  G   KR
Sbjct:   614 IACGSNYTAAICLHKWVSGAEQSQCSTCRLAFGFTRKR 651

GO:0003682 "chromatin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:504956339 RUG1 "AT5G08710" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    49 SCGLFHSGLV-VNGKLWIWGKGDGGRLGFGHEDAAFV--PTLNPYLDD-HVRCIALGGVH 104
             S G +HS  + V+G+L++WGK   G+LG G + A  V  PT    L    ++ +ALG  H
Sbjct:   140 SAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSEH 199

Query:   105 SIALT 109
             S+A+T
Sbjct:   200 SVAVT 204

GO:0003682 "chromatin binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0008536 "Ran GTPase binding" evidence=ISS

ZFIN|ZDB-GENE-090313-139 herc3 "hect domain and RLD 3" [Danio rerio (taxid:7955)]

 Score = 116 (45.9 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 30/65 (46%), Positives = 39/65 (60%)

Query:    49 SCGLFHSGLVVN--GKLWIWGKGDGGRLGFGH-EDAAFVPTLNPYLDDH-VRCIALGGVH 104
             SCG  HS L VN  G+++ WG GDGG+LG G  E+A  VP L   L +H +  +  G  H
Sbjct:    90 SCGQAHS-LAVNEQGQVFAWGAGDGGQLGLGTAEEAVRVPRLIKKLCEHRISQVMCGNHH 148

Query:   105 SIALT 109
              IAL+
Sbjct:   149 CIALS 153

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

TAIR|locus:2146142 AT5G16040 "AT5G16040" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 24/65 (36%), Positives = 40/65 (61%)

Query:    49 SCGLFHSGLVVN-GKLWIWGKGDGGRLGFGHEDAA--FVPT-LNPYLDDHVRCIALGGVH 104
             + G +HS  + N G+++ WG+G+ GRLGFG  D +   +P  +N    + +  ++ GG H
Sbjct:   254 AAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTH 313

Query:   105 SIALT 109
             S+ALT
Sbjct:   314 SVALT 318

GO:0003682 "chromatin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008536 "Ran GTPase binding" evidence=ISS

TAIR|locus:2144291 AT5G11580 "AT5G11580" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 25/51 (49%), Positives = 31/51 (60%)

Query:    41 SKRFSN--SSSCGLFHSGLVVNG--KLWIWGKGDGGRLGFGHEDAAFVPTL 87
             S RF +    SCG  H+ LVV+G  KLW WG+G  G LG G+    +VPTL
Sbjct:   379 SSRFRDPVQVSCGAAHTVLVVDGGYKLWSWGRGRNGVLGTGNVSDCYVPTL 429

GO:0003682 "chromatin binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008536 "Ran GTPase binding" evidence=ISS

TAIR|locus:2076889 AT3G02510 "AT3G02510" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 24/65 (36%), Positives = 39/65 (60%)

Query:    49 SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAA--FVPT-LNPYLDDHVRCIALGGVH 104
             + G +HS  L   G+++ WG+G+ GRLG G  D +   VP  +N   ++ +  ++ GG H
Sbjct:   254 AAGGWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQVSCGGTH 313

Query:   105 SIALT 109
             S+ALT
Sbjct:   314 SVALT 318

GO:0003682 "chromatin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008536 "Ran GTPase binding" evidence=ISS

UNIPROTKB|Q9UII4 HERC5 "E3 ISG15--protein ligase HERC5" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query:    49 SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIALGGVHSI 106
             S G  HS  L ++G ++ WGK + G+LG GH ++   P+L   LD+  V  +A GG HS 
Sbjct:   197 SAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSA 256

Query:   107 ALT 109
              LT
Sbjct:   257 LLT 259

GO:0051607 "defense response to virus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0032020 "ISG15-protein conjugation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042296 "ISG15 ligase activity" evidence=IDA

GO:0050688 "regulation of defense response to virus" evidence=IDA

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	131
pfam00415	50	pfam00415, RCC1, Regulator of chromosome condensat	5e-07
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	0.004

>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat

 Score = 43.3 bits (103), Expect = 5e-07
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 60  NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYL-DDHVRCIALGGVHSIAL 108
           +G+++ WG+ + G+LG G E+   VP L   L    V  +A G  H++AL
Sbjct: 1   DGRVYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50

Length = 50

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 57  LVVNGKLWIWGKGDGGRLGFGH-EDAAFVPTLNPYLDDH---VRCIALGGVHSIALTS 110
           LV    ++ WG      LG G+ E     P LNP+       +  IA GG HS+ L  
Sbjct: 64  LVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDH 121

Length = 476

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
KOG1427	443	consensus Uncharacterized conserved protein, conta	99.88
COG5184	476	ATS1 Alpha-tubulin suppressor and related RCC1 dom	99.77
COG5184	476	ATS1 Alpha-tubulin suppressor and related RCC1 dom	99.75
KOG1427	443	consensus Uncharacterized conserved protein, conta	99.71
PF00415	51	RCC1: Regulator of chromosome condensation (RCC1)	99.66
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.63
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	99.57
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.5
PF13540	30	RCC1_2: Regulator of chromosome condensation (RCC1	99.36
PF13540	30	RCC1_2: Regulator of chromosome condensation (RCC1	99.33
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	99.17
KOG0941	850	consensus E3 ubiquitin protein ligase [Posttransla	98.97
PF00415	51	RCC1: Regulator of chromosome condensation (RCC1)	98.87
KOG0941	850	consensus E3 ubiquitin protein ligase [Posttransla	98.55
KOG3669	705	consensus Uncharacterized conserved protein, conta	92.79
PRK02529	33	petN cytochrome b6-f complex subunit PetN; Provisi	86.37
KOG0649	325	consensus WD40 repeat protein [General function pr	83.18
smart00706	35	TECPR Beta propeller repeats in Physarum polycepha	80.84
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	80.51

>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]

Probab=99.88  E-value=9.6e-23  Score=154.74  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=93.3

Q ss_pred             ecCCCeEEEEecCCCCCCCCCCCCceecC-------CCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCCCCC---
Q 035899           13 LMAEEALVVRLFNSENSPNWNQLANLSVS-------KRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDA---   81 (131)
Q Consensus        13 ~~~~~~l~~~g~n~~gqlg~~~~~~~~~~-------~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~~~~---   81 (131)
                      +.-++..+.||.|..||||+.+.....-|       ..+|++.|||++|+ +|+++|.||+||.|.+||||+++...   
T Consensus        73 i~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~  152 (443)
T KOG1427|consen   73 IDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVE  152 (443)
T ss_pred             EecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccc
Confidence            44578889999999999999976543322       35688999999999 57789999999999999999987321   


Q ss_pred             ---------------------------------------------------------------eeeeEEcCCCCC-ceEE
Q 035899           82 ---------------------------------------------------------------AFVPTLNPYLDD-HVRC   97 (131)
Q Consensus        82 ---------------------------------------------------------------~~~P~~v~~l~~-~i~~   97 (131)
                                                                                     ++.|..|..+.+ .|++
T Consensus       153 s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~  232 (443)
T KOG1427|consen  153 STPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVK  232 (443)
T ss_pred             cCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEE
Confidence                                                                           123445556666 8999


Q ss_pred             EeccccceEEEecCCcEEEecCCCCCCccc
Q 035899           98 IALGGVHSIALTSLAVEECNRCLILGEEEK  127 (131)
Q Consensus        98 ia~G~~hs~~lt~~g~vy~wG~~~~G~~~~  127 (131)
                      +|||.+|+++++++++||+||.|-|||...
T Consensus       233 ~acg~nhtvavd~nkrVysWGFGGyGRLGH  262 (443)
T KOG1427|consen  233 VACGTNHTVAVDKNKRVYSWGFGGYGRLGH  262 (443)
T ss_pred             EeccCcceeeecCCccEEEecccccccccc
Confidence            999999999999999999999999988544

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.77  E-value=1e-18  Score=138.75  Aligned_cols=118  Identities=20%  Similarity=0.164  Sum_probs=92.4

Q ss_pred             EEEecCCCeEEEEecCCCCCCCCCCC----------CceecCCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCC
Q 035899           10 IFSLMAEEALVVRLFNSENSPNWNQL----------ANLSVSKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGH   78 (131)
Q Consensus        10 ~~~~~~~~~l~~~g~n~~gqlg~~~~----------~~~~~~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~   78 (131)
                      .-++.+++.+|.||....+-++....          ..+.++...|+++|+|.+|. +|+.+|++|+||+|..||||...
T Consensus       188 svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~  267 (476)
T COG5184         188 SVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPT  267 (476)
T ss_pred             EEEEccCCcEEEecCccccccccccccccccceeeeeeeecCchheeeeccCCceEEEEecCCcEEEecCCcccccCCch
Confidence            34566777888888766666655422          12334567899999999998 56779999999999999999998


Q ss_pred             CCCeeeeEEcCCCCC--ceEEEeccccceEEEecCCcEEEecCCCCCCccc
Q 035899           79 EDAAFVPTLNPYLDD--HVRCIALGGVHSIALTSLAVEECNRCLILGEEEK  127 (131)
Q Consensus        79 ~~~~~~P~~v~~l~~--~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~~~  127 (131)
                      .+....+..++.+-.  .|.+|+||.+|++||+++|+||+||.|.+||...
T Consensus       268 ~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~  318 (476)
T COG5184         268 SERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGA  318 (476)
T ss_pred             hhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhccccc
Confidence            776655555553332  6788999999999999999999999999998653

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.75  E-value=9e-18  Score=133.36  Aligned_cols=119  Identities=23%  Similarity=0.122  Sum_probs=97.3

Q ss_pred             ceEEEEEecCCCeEEEEecCCCCCCCCCCCCc-----------eecCCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCC
Q 035899            6 EELYIFSLMAEEALVVRLFNSENSPNWNQLAN-----------LSVSKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGR   73 (131)
Q Consensus         6 ~~l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~-----------~~~~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~Gq   73 (131)
                      ++-+++++..++.++.||.|.+||++.++-.+           .......|.++++|..|+ +|..+|.||+||++..+|
T Consensus       292 G~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~q  371 (476)
T COG5184         292 GKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQ  371 (476)
T ss_pred             CcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccc
Confidence            56789999999999999999999999982111           112245588999999998 566899999999999999


Q ss_pred             CCCCCC--CCeeeeEEcCCCCCceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899           74 LGFGHE--DAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEE  125 (131)
Q Consensus        74 LG~g~~--~~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~  125 (131)
                      ||+.+.  .....|+++.... ++.+++||..|+++.+++|+||+||.|.+|+.
T Consensus       372 lg~~~~~~~~~~~~~~ls~~~-~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnl  424 (476)
T COG5184         372 LGIQEEITIDVSTPTKLSVAI-KLEQVACGTHHNIARTDDGSVYSWGWGEHGNL  424 (476)
T ss_pred             ccCcccceeecCCcccccccc-ceEEEEecCccceeeccCCceEEecCchhhhc
Confidence            999984  4445555555333 79999999999999999999999999987764

>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]

Probab=99.71  E-value=7.9e-18  Score=128.11  Aligned_cols=87  Identities=23%  Similarity=0.279  Sum_probs=76.8

Q ss_pred             cCCCeEEEEEccC--cceEEEe-CCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEE
Q 035899           40 VSKRFSNSSSCGL--FHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEE  115 (131)
Q Consensus        40 ~~~~~i~~is~G~--~hsal~~-~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy  115 (131)
                      ..+..|.-|+.|.  .|++|++ +|+.|+||+|+.||||+++......|+.|+.|.. +|++.|||.+||++||++|.||
T Consensus        53 l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~  132 (443)
T KOG1427|consen   53 LVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVL  132 (443)
T ss_pred             cccceEEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEE
Confidence            3455677776664  6887665 9999999999999999999888999999999988 9999999999999999999999


Q ss_pred             EecCCCCCCcc
Q 035899          116 CNRCLILGEEE  126 (131)
Q Consensus       116 ~wG~~~~G~~~  126 (131)
                      .+|.|.+||..
T Consensus       133 afGeNK~GQlG  143 (443)
T KOG1427|consen  133 AFGENKYGQLG  143 (443)
T ss_pred             Eeccccccccc
Confidence            99999999853

>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS)

Probab=99.66  E-value=1.3e-16  Score=91.96  Aligned_cols=49  Identities=37%  Similarity=0.729  Sum_probs=45.5

Q ss_pred             CCeEEEEeCCCCCCCC-CCCCCCeeeeEEcCCCCC-ceEEEeccccceEEE
Q 035899           60 NGKLWIWGKGDGGRLG-FGHEDAAFVPTLNPYLDD-HVRCIALGGVHSIAL  108 (131)
Q Consensus        60 ~G~vy~wG~n~~GqLG-~g~~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~l  108 (131)
                      ||+||+||.|++|||| .+.......|++|+.+.. +|++|+||..||++|
T Consensus         1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l   51 (51)
T PF00415_consen    1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL   51 (51)
T ss_dssp             TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred             CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence            7999999999999999 777778899999998887 899999999999997

The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.63  E-value=3.8e-16  Score=130.66  Aligned_cols=113  Identities=27%  Similarity=0.288  Sum_probs=93.2

Q ss_pred             ecCCCeEEEEecCCCCCCCCCCCCceec---------CCCeEEEEEccCcceE-EEeCCeEEEEeCCCCCCCCCCCCCCe
Q 035899           13 LMAEEALVVRLFNSENSPNWNQLANLSV---------SKRFSNSSSCGLFHSG-LVVNGKLWIWGKGDGGRLGFGHEDAA   82 (131)
Q Consensus        13 ~~~~~~l~~~g~n~~gqlg~~~~~~~~~---------~~~~i~~is~G~~hsa-l~~~G~vy~wG~n~~GqLG~g~~~~~   82 (131)
                      +.....+++||.|.+.-||+++-.+-..         ++.-+.+|+.+.+||+ ++..|+||++|-|.-|+||+|+...-
T Consensus       138 ~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~~  217 (1267)
T KOG0783|consen  138 LDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQYN  217 (1267)
T ss_pred             cCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccccc
Confidence            3344556666668888888876544332         2445667999999995 56799999999999999999988888


Q ss_pred             eeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899           83 FVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRCLILGEE  125 (131)
Q Consensus        83 ~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~  125 (131)
                      +.|++|+.|.+ +|.+|+....||++||.+|.||+||.|..+|.
T Consensus       218 ~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqL  261 (1267)
T KOG0783|consen  218 FIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQL  261 (1267)
T ss_pred             ccccccccccccceEEEEeecceeEEEeecceEEEeecCccccc
Confidence            99999999888 99999999999999999999999999877663

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=99.57  E-value=1e-14  Score=126.93  Aligned_cols=82  Identities=23%  Similarity=0.273  Sum_probs=73.6

Q ss_pred             eEEEEEccCcceEE-EeCCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecC--
Q 035899           44 FSNSSSCGLFHSGL-VVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRC--  119 (131)
Q Consensus        44 ~i~~is~G~~hsal-~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~--  119 (131)
                      ++.+|+||..|+++ .+|++||+||.|.+||||+|+......|++|..+.+ .+++|++|.+|++++..||.||+||.  
T Consensus       768 kv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~  847 (3738)
T KOG1428|consen  768 KVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFG  847 (3738)
T ss_pred             eEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEecccc
Confidence            46789999999965 579999999999999999999999999999988887 89999999999999999999999875  


Q ss_pred             -CCCCCc
Q 035899          120 -LILGEE  125 (131)
Q Consensus       120 -~~~G~~  125 (131)
                       |+++|+
T Consensus       848 KGQL~RP  854 (3738)
T KOG1428|consen  848 KGQLARP  854 (3738)
T ss_pred             CccccCc
Confidence             555554

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.50  E-value=6.5e-14  Score=117.54  Aligned_cols=112  Identities=17%  Similarity=0.128  Sum_probs=89.2

Q ss_pred             CCCeEEEEecCCCCCCCCCCCCceecC-------CCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCCCCC-eeee
Q 035899           15 AEEALVVRLFNSENSPNWNQLANLSVS-------KRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDA-AFVP   85 (131)
Q Consensus        15 ~~~~l~~~g~n~~gqlg~~~~~~~~~~-------~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~~~~-~~~P   85 (131)
                      ..+++|+.|...-|.||+++.....+|       +-.+++||+...|| +|+.+|-||+||.|..+|||+.+... ...|
T Consensus       194 ~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p  273 (1267)
T KOG0783|consen  194 EKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDP  273 (1267)
T ss_pred             CCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCch
Confidence            788899999999999999875544433       34688999999999 67889999999999999999987543 3455


Q ss_pred             EEcCCC--CC--ceEEEeccccceEEEecCCcEEEecCC--CCCCccc
Q 035899           86 TLNPYL--DD--HVRCIALGGVHSIALTSLAVEECNRCL--ILGEEEK  127 (131)
Q Consensus        86 ~~v~~l--~~--~i~~ia~G~~hs~~lt~~g~vy~wG~~--~~G~~~~  127 (131)
                      ++|...  .+  .|+.|++|..||++-+ +-.||+||.|  ++|-+..
T Consensus       274 ~qI~a~r~kg~~~iIgvaAg~~hsVawt-~~~VY~wGlN~GQlGi~~n  320 (1267)
T KOG0783|consen  274 IQITARRIKGFKQIIGVAAGKSHSVAWT-DTDVYSWGLNNGQLGISDN  320 (1267)
T ss_pred             hhhhhHhhcchhhhhhhhcccceeeeee-cceEEEecccCceecCCCC
Confidence            555422  22  7899999999999998 5589999964  6776554

>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B

Probab=99.36  E-value=8.9e-13  Score=68.24  Aligned_cols=30  Identities=40%  Similarity=0.331  Sum_probs=25.9

Q ss_pred             eEEEeccccceEEEecCCcEEEecCCCCCC
Q 035899           95 VRCIALGGVHSIALTSLAVEECNRCLILGE  124 (131)
Q Consensus        95 i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~  124 (131)
                      |++|+||..|+++|+++|+||+||.|.+||
T Consensus         1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ   30 (30)
T PF13540_consen    1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ   30 (30)
T ss_dssp             EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred             CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence            689999999999999999999999999987

>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B

Probab=99.33  E-value=2.2e-12  Score=66.75  Aligned_cols=29  Identities=28%  Similarity=0.792  Sum_probs=23.8

Q ss_pred             EEEEEccCcce-EEEeCCeEEEEeCCCCCC
Q 035899           45 SNSSSCGLFHS-GLVVNGKLWIWGKGDGGR   73 (131)
Q Consensus        45 i~~is~G~~hs-al~~~G~vy~wG~n~~Gq   73 (131)
                      |++||||.+|+ +|+++|+||+||.|.+||
T Consensus         1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ   30 (30)
T PF13540_consen    1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ   30 (30)
T ss_dssp             EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred             CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence            67999999999 567899999999999998

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=99.17  E-value=1e-10  Score=102.76  Aligned_cols=33  Identities=18%  Similarity=0.120  Sum_probs=30.8

Q ss_pred             ceEEEeccccceEEEecCCcEEEecCCCCCCcc
Q 035899           94 HVRCIALGGVHSIALTSLAVEECNRCLILGEEE  126 (131)
Q Consensus        94 ~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~~  126 (131)
                      ++.+|+||.+|+++|.+|++||+||+|..||..
T Consensus       768 kv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG  800 (3738)
T KOG1428|consen  768 KVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLG  800 (3738)
T ss_pred             eEEEEeccCceEEEEecCCcEEEecCCcccccC
Confidence            789999999999999999999999999988854

>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=5e-11  Score=100.22  Aligned_cols=85  Identities=24%  Similarity=0.308  Sum_probs=73.9

Q ss_pred             CeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCC-ceEEEeccccceEEEec-------CCc
Q 035899           43 RFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHSIALTS-------LAV  113 (131)
Q Consensus        43 ~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~-------~g~  113 (131)
                      +.+++++||.+|+ |+...|++|+||.+.+||+|.+.......|..++.+.+ +..+|+||..||++++.       +|.
T Consensus        14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~   93 (850)
T KOG0941|consen   14 KHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGK   93 (850)
T ss_pred             hhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhcc
Confidence            4688999999998 78899999999999999999995544334999998888 89999999998887766       999


Q ss_pred             EEEecCCCCCCccc
Q 035899          114 EECNRCLILGEEEK  127 (131)
Q Consensus       114 vy~wG~~~~G~~~~  127 (131)
                      ++.+|++..|+..+
T Consensus        94 ~fs~Ga~~~~q~~h  107 (850)
T KOG0941|consen   94 VFSFGAGSTGQLGH  107 (850)
T ss_pred             ccccCCcccccccc
Confidence            99999999988665

>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS)

Probab=98.87  E-value=5.4e-09  Score=59.77  Aligned_cols=43  Identities=16%  Similarity=0.027  Sum_probs=31.5

Q ss_pred             CCeEEEEecCCCCCCC-CCCCCceecC-------CCeEEEEEccCcceEEE
Q 035899           16 EEALVVRLFNSENSPN-WNQLANLSVS-------KRFSNSSSCGLFHSGLV   58 (131)
Q Consensus        16 ~~~l~~~g~n~~gqlg-~~~~~~~~~~-------~~~i~~is~G~~hsal~   58 (131)
                      ++.+|.||.|.+|||| .........|       ..+|++|+||.+||+++
T Consensus         1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l   51 (51)
T PF00415_consen    1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL   51 (51)
T ss_dssp             TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred             CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence            4566777779999999 5555444332       46799999999999653

The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.

>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=2.8e-09  Score=89.95  Aligned_cols=111  Identities=24%  Similarity=0.214  Sum_probs=86.3

Q ss_pred             ecCCCeEEEEecCCCCCCCCCC----CCc---eecCCCeEEEEEccCcce-EEEe-------CCeEEEEeCCCCCCCCCC
Q 035899           13 LMAEEALVVRLFNSENSPNWNQ----LAN---LSVSKRFSNSSSCGLFHS-GLVV-------NGKLWIWGKGDGGRLGFG   77 (131)
Q Consensus        13 ~~~~~~l~~~g~n~~gqlg~~~----~~~---~~~~~~~i~~is~G~~hs-al~~-------~G~vy~wG~n~~GqLG~g   77 (131)
                      +...+.+++||.|.+||++...    ...   -+..+.+..+|+||..|| ++..       +|.+|++|....||+|+.
T Consensus        29 l~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h~  108 (850)
T KOG0941|consen   29 LSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGKVFSFGAGSTGQLGHS  108 (850)
T ss_pred             hhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhccccccCCccccccccc
Confidence            4566788888889999998761    111   123356677899999997 4434       899999999999999997


Q ss_pred             CCCCeeeeEEcCCCCC-ceEEEeccccceEEEe-cCCcEEEecCCCCC
Q 035899           78 HEDAAFVPTLNPYLDD-HVRCIALGGVHSIALT-SLAVEECNRCLILG  123 (131)
Q Consensus        78 ~~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt-~~g~vy~wG~~~~G  123 (131)
                      .......|..+..+-+ .+.+|+||..|+.+.- .-|++|.+|.+.-|
T Consensus       109 ~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG  156 (850)
T KOG0941|consen  109 LTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG  156 (850)
T ss_pred             ccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence            6666677777765555 8999999999998864 56899999998877

>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]

Probab=92.79  E-value=1.9  Score=36.51  Aligned_cols=104  Identities=13%  Similarity=0.075  Sum_probs=63.7

Q ss_pred             ceEEEEEecCCCeEEEEe-cCCCCCCCCCCCCceecCCCeEEEEEccCcce--EEEeCCeEE-EEeCCCCCCCCCCCCCC
Q 035899            6 EELYIFSLMAEEALVVRL-FNSENSPNWNQLANLSVSKRFSNSSSCGLFHS--GLVVNGKLW-IWGKGDGGRLGFGHEDA   81 (131)
Q Consensus         6 ~~l~~~~~~~~~~l~~~g-~n~~gqlg~~~~~~~~~~~~~i~~is~G~~hs--al~~~G~vy-~wG~n~~GqLG~g~~~~   81 (131)
                      +.+..|++.++|.++.+- .-.+..-|..=  ....+-..+.+|++|..-.  |++.+|.|| --|-.+..+-|..=. +
T Consensus       191 g~~~awAI~s~Gd~y~RtGvs~~~P~GraW--~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-d  267 (705)
T KOG3669|consen  191 GDDTAWAIRSSGDLYLRTGVSVDRPCGRAW--KVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-D  267 (705)
T ss_pred             CceEEEEEecCCcEEEeccccCCCCCCcee--eecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-h
Confidence            467788888888887742 22222212110  0111122578999999443  567799875 456666555553222 3


Q ss_pred             eeeeEEcCCCCCceEEEeccccceEEEecCCcEEE
Q 035899           82 AFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEEC  116 (131)
Q Consensus        82 ~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~  116 (131)
                      ..+|+...    .++.|+.|..-.-+||.+|.++.
T Consensus       268 I~tP~~a~----~~v~iSvGt~t~Waldndg~lwf  298 (705)
T KOG3669|consen  268 IVTPRQAL----EPVCISVGTQTLWALDNDGNLWF  298 (705)
T ss_pred             ccCccccc----ceEEEEeccceEEEEecCCcEEE
Confidence            34444432    38899999888899999999964

>PRK02529 petN cytochrome b6-f complex subunit PetN; Provisional

Probab=86.37  E-value=0.65  Score=23.92  Aligned_cols=20  Identities=35%  Similarity=0.521  Sum_probs=15.9

Q ss_pred             EEEEEecCCCeEEEEecCCCCCCC
Q 035899            8 LYIFSLMAEEALVVRLFNSENSPN   31 (131)
Q Consensus         8 l~~~~~~~~~~l~~~g~n~~gqlg   31 (131)
                      +|+|++    ++++||.|..|.++
T Consensus        13 ~FTfSl----slVVWGRnG~g~~~   32 (33)
T PRK02529         13 IFTFSI----AMVVWGRNGDGSID   32 (33)
T ss_pred             Hhheee----EEEEEecCCccccC
Confidence            466776    79999999988764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=83.18  E-value=13  Score=28.64  Aligned_cols=15  Identities=13%  Similarity=0.370  Sum_probs=12.7

Q ss_pred             eCCeEEEEeCCCCCC
Q 035899           59 VNGKLWIWGKGDGGR   73 (131)
Q Consensus        59 ~~G~vy~wG~n~~Gq   73 (131)
                      -||+||.|=+++.-.
T Consensus        79 gdG~V~gw~W~E~~e   93 (325)
T KOG0649|consen   79 GDGLVYGWEWNEEEE   93 (325)
T ss_pred             cCceEEEeeehhhhh
Confidence            389999999998765

>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins

Probab=80.84  E-value=3.7  Score=20.96  Aligned_cols=24  Identities=13%  Similarity=-0.043  Sum_probs=21.0

Q ss_pred             ceEEEeccc-cceEEEecCCcEEEe
Q 035899           94 HVRCIALGG-VHSIALTSLAVEECN  117 (131)
Q Consensus        94 ~i~~ia~G~-~hs~~lt~~g~vy~w  117 (131)
                      .+++|++|. ....+++.+|.+|..
T Consensus         9 ~l~~isvg~~~~vW~V~~~g~i~~r   33 (35)
T smart00706        9 ELVQVSVGPSDTVWAVNSDGNIYRR   33 (35)
T ss_pred             CEEEEEECCCCeEEEEcCCCCEEEE
Confidence            789999999 888889999999864

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=80.51  E-value=2.3  Score=31.36  Aligned_cols=26  Identities=19%  Similarity=0.091  Sum_probs=23.6

Q ss_pred             ceEEEeccccceEEEecCCcEEEecC
Q 035899           94 HVRCIALGGVHSIALTSLAVEECNRC  119 (131)
Q Consensus        94 ~i~~ia~G~~hs~~lt~~g~vy~wG~  119 (131)
                      +++.+.|-..+-+++|.+|.+|+|.-
T Consensus        14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl   39 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSSGLLYVWNL   39 (219)
T ss_pred             ceEEEEeCCCEEEEEeCCCeEEEEEC
Confidence            78889999999999999999999964

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	6e-13
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	5e-12
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	6e-12
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	3e-11
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	5e-11
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	3e-08
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	8e-08
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	1e-12
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	2e-12
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	1e-11
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	6e-11
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	1e-10
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	3e-08
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	1e-06
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	3e-12
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	5e-12
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	1e-11
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	3e-11
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	8e-11
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	9e-11
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	6e-10
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	4e-12
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	5e-12
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	6e-12
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	1e-11
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	1e-11
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	3e-11
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	1e-08
3of7_A	473	Regulator of chromosome condensation; beta-propell	8e-12
3of7_A	473	Regulator of chromosome condensation; beta-propell	1e-10
3of7_A	473	Regulator of chromosome condensation; beta-propell	1e-10
3of7_A	473	Regulator of chromosome condensation; beta-propell	1e-09
3of7_A	473	Regulator of chromosome condensation; beta-propell	6e-09
3of7_A	473	Regulator of chromosome condensation; beta-propell	8e-09
3of7_A	473	Regulator of chromosome condensation; beta-propell	3e-06
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	8e-08
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	2e-06
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	7e-06
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	8e-06
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	1e-05
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	1e-04

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 63.1 bits (154), Expect = 6e-13
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGH-EDAAFVPTLNPYLDDHVRCIALGGVHSI 106
           + G  H+  L  + K  + G+ + GRLG G  +D    PT+   L + +  +  G V S 
Sbjct: 300 AGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSY 359

Query: 107 ALTS 110
           A+T 
Sbjct: 360 AVTI 363

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 60.4 bits (147), Expect = 5e-12
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 49  SCGLFHSGLVV--NGKLWIWGKGDGGRLGFGHEDAAFVPTL--NPYLDD-HVRCIALGGV 103
            CG   S   V  +GKL+ WG G   +LG G  D    P +  +      H+   + GG 
Sbjct: 352 GCGEVCS-YAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQ 410

Query: 104 HSIALTS 110
           H+I L  
Sbjct: 411 HAIFLVK 417

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 60.4 bits (147), Expect = 6e-12
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 49  SCGLFHSGLVV--NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSI 106
               + + +       +W  G  +  +L    +   F  T        +R IA G  H++
Sbjct: 248 WATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTV 307

Query: 107 ALTS 110
            LT+
Sbjct: 308 ILTT 311

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 49  SCGLFHSGLV-VNGKLWIWGKGDGGRLGFGH--EDAAFVPTLNPYLDDHVRCIALGGVHS 105
           S G  H+ ++  +G ++ +G  D G LG     + +   P L         CI+ G  HS
Sbjct: 81  SAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGK-ALCISAGDSHS 139

Query: 106 IALTS 110
             L  
Sbjct: 140 ACLLE 144

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 22  RLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLV-VNGKLWIWGKGDGGRLGFGHED 80
            L N+ N+    Q    +   R +      L       V G + + G GD G+LG G ED
Sbjct: 7   ALTNNNNAGEAEQQPPKAKRARIA----FHLELPKRRTVLGNVLVCGNGDVGQLGLG-ED 61

Query: 81  AAFVPTLNPYLDDH-VRCIALGGVHSIALTS 110
                 L+P         I+ GG+H++ LT 
Sbjct: 62  ILERKRLSPVAGIPDAVDISAGGMHNLVLTK 92

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 49  SCGLFHSGLVV--NGKLWIWGKGDG--GRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVH 104
           S G  HS   +  +G+++ WG      G +G   +     P            IA G  H
Sbjct: 133 SAGDSHS-ACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTV-CCSIASGADH 190

Query: 105 SIALTS 110
            + LT+
Sbjct: 191 LVILTT 196

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 13/75 (17%), Positives = 20/75 (26%), Gaps = 13/75 (17%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD------------HV 95
           + G  H   L   GK++  G  + G+LG   E +          D               
Sbjct: 185 ASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPF 244

Query: 96  RCIALGGVHSIALTS 110
             I      +    S
Sbjct: 245 EAIWATNYCTFMRES 259

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH---VRCIALGGVH 104
            CG + +  +   G ++ +G  +  +LG    ++ F+P       +        + G  H
Sbjct: 238 FCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHH 297

Query: 105 SIALTS 110
           ++ + S
Sbjct: 298 TVCMDS 303

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 49  SCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHE-DAAFVPTLNPYLDDHVRCIALGGVHSI 106
              + H       G +   G+GD G+LG G        P L    +D V     GG+H++
Sbjct: 14  KVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED-VVQAEAGGMHTV 72

Query: 107 ALTS 110
            L+ 
Sbjct: 73  CLSK 76

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 49  SCGLFHSGLVV--NGKLWIWGKGDGGRLGFGHEDAAFVPTL--NPYLDD-HVRCIALGGV 103
           +CG       V  +G+++ WG G   +LG G ++ A+ P       L++  V  ++ GG 
Sbjct: 343 ACGASVG-YAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQ 401

Query: 104 HSIALTS 110
           H++ L  
Sbjct: 402 HTVLLVK 408

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHE-DAAFVPTLNPYLDDHVRCIALGGVHSI 106
           S G  H+  +   GK +  G+ + GRLG G   +   +PTL   L   V  +A G     
Sbjct: 292 SGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA-VSSVACGASVGY 350

Query: 107 ALTS 110
           A+T 
Sbjct: 351 AVTK 354

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 49  SCGLFHSGLV-VNGKLWIWGKGDGGRLGFGH--EDAAFVPTLNPYLDDHVRCIALGGVHS 105
             G  H+  +  +G+++ +G  D G LG     E +  VP      +  V  ++ G  H+
Sbjct: 65  EAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEK-VVQVSAGDSHT 123

Query: 106 IALTS 110
            ALT 
Sbjct: 124 AALTD 128

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKG--DGGRLGFGHE-DAAFVPTLNPYLDDHVRCIALGGVH 104
           S G  H+  L  +G++++WG    + G +G       + VP         V  +A G  H
Sbjct: 117 SAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVP-VVKVASGNDH 175

Query: 105 SIALTS 110
            + LT+
Sbjct: 176 LVMLTA 181

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 18/80 (22%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHE-----------DAAFVPTLNPYLDD--- 93
           + G  H   L  +G L+  G G+ G+LG   E           +   VP           
Sbjct: 170 ASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSR 229

Query: 94  ---HVRCIALGGVHSIALTS 110
                +    G   + A++ 
Sbjct: 230 GHVRFQDAFCGAYFTFAISH 249

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHSI 106
           + G  H      +G+++ WG  D G+LG G  +A   P L   L    V  +A G  H++
Sbjct: 323 ATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTL 382

Query: 107 ALTS 110
           A ++
Sbjct: 383 AWST 386

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 49  SCGLFHSGLV-VNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRC---IALGGVH 104
             G      V  +GKL+  G G GGRLG G  ++   PTL   +         +  GG H
Sbjct: 59  IGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKH 118

Query: 105 SIALTS 110
            +AL+S
Sbjct: 119 CLALSS 124

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 34  QLANLSVSKRFSNSSSCGLFHSGLVV--NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYL 91
            L ++        + + G  H  L +   G+++ WG+ + G+LG G+      P +   L
Sbjct: 98  LLESIQHVFIKKVAVNSGGKHC-LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL 156

Query: 92  DD-HVRCIALGGVHSIALTS 110
               V  +A GG HS  +T+
Sbjct: 157 RGIEVVDVAAGGAHSACVTA 176

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 58.0 bits (141), Expect = 3e-11
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIALGGVHSI 106
            CG   S  L  +G ++ WGKGD  RLG G +D    P     L    V  IA G +H +
Sbjct: 271 ECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 330

Query: 107 ALTS 110
             T 
Sbjct: 331 CCTE 334

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 56.9 bits (138), Expect = 8e-11
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 47  SSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVH 104
           +   G   +  L  +  +W WG GD G+LG G  D   VP     L    V  +  G   
Sbjct: 217 ACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQF 276

Query: 105 SIALTS 110
           S+ALT 
Sbjct: 277 SVALTK 282

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 56.9 bits (138), Expect = 9e-11
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 49  SCGLFHSGLV-VNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHSI 106
                 +     +G ++ WG    G+LG        VPT    L       +  G     
Sbjct: 7   HSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLF 66

Query: 107 ALTS 110
           A+T+
Sbjct: 67  AVTA 70

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 49  SCGLFHSGLVV--NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGG--V 103
           + G  HS   V   G L+ WGKG  GRLG    +    P L   L    V  IA G    
Sbjct: 165 AAGGAHS-ACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDA 223

Query: 104 HSIALTS 110
            ++ LT 
Sbjct: 224 QTLCLTD 230

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 49  SCGLFHSGLVVN--GKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHS 105
           +CG  H+        +++ WG GD GRLG G+    F P     L    ++ IA G  H 
Sbjct: 74  TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 133

Query: 106 IALTS 110
           +A+T 
Sbjct: 134 LAVTM 138

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHSI 106
           +CG  H+  +  +G L+ +G    G+LG G  +   +P     L +  +  I+ G  H++
Sbjct: 231 ACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTM 290

Query: 107 ALTS 110
           ALTS
Sbjct: 291 ALTS 294

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score = 60.3 bits (147), Expect = 6e-12
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 49  SCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIALGGVHSI 106
           S G  HS  ++    +  WG+G+ G+LG G  +    PT    LD H +  +  G  H++
Sbjct: 22  SAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTV 81

Query: 107 ALTS 110
           A + 
Sbjct: 82  AYSQ 85

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 49  SCGLFHSGLVV--NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHS 105
           +CG  H  L V   G++  WG+   G+LG G  + + VP      +   ++ +A G  H+
Sbjct: 127 ACGDSHC-LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHT 185

Query: 106 IALTS 110
            A+T 
Sbjct: 186 AAVTE 190

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHSI 106
           + G  H+  +  +G L+ WG G  G LG G      VP          +  +A G  H+I
Sbjct: 179 AAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTI 238

Query: 107 ALTS 110
           +++ 
Sbjct: 239 SVSY 242

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score = 58.0 bits (141), Expect = 3e-11
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHSI 106
           S G  H+  L  +GKL+ WG    G++G G+      P    + DD  V  ++ G  H++
Sbjct: 283 SGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 342

Query: 107 ALTS 110
           A+T 
Sbjct: 343 AVTE 346

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 49  SCGLFHSGLVV--NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSI 106
           SCG  H+ L V     ++ WG+G  G+LG G       P +   L         G     
Sbjct: 335 SCGWRHT-LAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGAS---GQHIES 390

Query: 107 ALTS 110
           +   
Sbjct: 391 SNID 394

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 59.8 bits (145), Expect = 8e-12
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 49  SCGLFHSGLVV-NGKLWIWGKGDGGRLGFG---HEDAAFVPTLNPYLDDH---VRCIALG 101
                H  L V    ++ WG G    LG G          P LNP+L      +   A+G
Sbjct: 16  QEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVG 75

Query: 102 GVHSIALTS 110
           G+H++AL  
Sbjct: 76  GMHTLALDE 84

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFG----HEDAAFVPTLNPYLDDH-VRCIALGG 102
           + G  H   L  + KL  WG    G+ G             P      D+  +R IA G 
Sbjct: 263 ASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGE 322

Query: 103 VHSIALTS 110
            HS+ L+ 
Sbjct: 323 HHSLILSQ 330

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD--HVRCIALGGVHS 105
           + G  H   L   G ++ WG G   +LG    +   + TL+P      HV+ IA G  H 
Sbjct: 210 APGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHC 269

Query: 106 IALTS 110
            ALT 
Sbjct: 270 FALTK 274

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 49  SCGLFHSGLVV--NGKLWIWGKGDGGRLGFGH-EDAAFVPTL--NPYLDDH-VRCIALGG 102
           + G  HS + V  NG  + WG G+   +G G  ED   VPT   N    DH +  +  GG
Sbjct: 383 AAGSHHS-VAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGG 441

Query: 103 VHSIALT 109
             S++  
Sbjct: 442 QFSVSGG 448

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 51.7 bits (124), Expect = 6e-09
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 6/68 (8%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHED----AAFVPTLNPYLDDH-VRCIALGG 102
           +     S  L  NG+++ WG         G           P   P    + +  +A G 
Sbjct: 154 AATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK 213

Query: 103 VHSIALTS 110
            H + L  
Sbjct: 214 DHILFLDE 221

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 51.3 bits (123), Expect = 8e-09
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 16/77 (20%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAF--------------VPTLNPYLDD 93
           + G  HS  L  +G L+  G+ D   +G   ++                 +PT    +  
Sbjct: 319 AAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPK 378

Query: 94  HVRCIALGGVHSIALTS 110
             + +A G  HS+A+  
Sbjct: 379 -FKSVAAGSHHSVAVAQ 394

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 17/93 (18%), Positives = 23/93 (24%), Gaps = 31/93 (33%)

Query: 49  SCGLFHSGLV-VNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-------------- 93
           + G  H+  +     +W WG  D G LG    +A          D               
Sbjct: 73  AVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELEST 132

Query: 94  ----------------HVRCIALGGVHSIALTS 110
                            V  +A     S AL S
Sbjct: 133 PAKIPRESFPPLAEGHKVVQLAATDNMSCALFS 165

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 11/62 (17%)

Query: 49  SCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIAL 108
           + G FH   +  GK+  WG    G+L         +P         V  IA G  HS+AL
Sbjct: 30  AGGYFHGLALKGGKVLGWGANLNGQLT--------MPAA---TQSGVDAIAAGNYHSLAL 78

Query: 109 TS 110
             
Sbjct: 79  KD 80

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 47  SSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSI 106
           +   G++ +  V NG +  WG    G+          VP         V  +A G  HS+
Sbjct: 145 ALDGGVYTALAVKNGGVIAWGDNYFGQTT--------VPAE---AQSGVDDVAGGIFHSL 193

Query: 107 ALTS 110
           AL  
Sbjct: 194 ALKD 197

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 15/62 (24%)

Query: 49  SCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIAL 108
           + G ++S  + NGK+  WG                           V  I  G   + AL
Sbjct: 225 ASGEWYSLALKNGKVIAWGSSRTAPSSVQ---------------SGVSSIEAGPNAAYAL 269

Query: 109 TS 110
             
Sbjct: 270 KG 271

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 11/62 (17%)

Query: 49  SCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIAL 108
           + G +HS  + +G++  WG  + G+          VP         V  IA G   S AL
Sbjct: 69  AAGNYHSLALKDGEVIAWGGNEDGQTT--------VPAE---ARSGVDAIAAGAWASYAL 117

Query: 109 TS 110
             
Sbjct: 118 KD 119

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 49  SCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIAL 108
           + G+FHS  + +GK+  WG     +             L+      V  IA G  +S+AL
Sbjct: 186 AGGIFHSLALKDGKVIAWGDNRYKQTTVP------TEALS-----GVSAIASGEWYSLAL 234

Query: 109 TS 110
            +
Sbjct: 235 KN 236

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 49  SCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIAL 108
           + G + S  + +GK+  WG    G+          VP         V  +  G   ++A+
Sbjct: 108 AAGAWASYALKDGKVIAWGDDSDGQTT--------VPAEAQ---SGVTALDGGVYTALAV 156

Query: 109 TS 110
            +
Sbjct: 157 KN 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	99.95
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	99.95
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	99.95
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	99.95
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	99.95
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	99.94
3of7_A	473	Regulator of chromosome condensation; beta-propell	99.94
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	99.93
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	99.93
3of7_A	473	Regulator of chromosome condensation; beta-propell	99.93
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	99.89
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	99.87
4gbf_A	400	Phikz131; 7-bladed beta-propeller, possibly partic	96.24
4gbf_A	400	Phikz131; 7-bladed beta-propeller, possibly partic	93.88

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=99.95  E-value=3e-27  Score=186.06  Aligned_cols=112  Identities=17%  Similarity=0.124  Sum_probs=95.3

Q ss_pred             cCCCeEEEEecCCCCCCCCCCCC------ceecCCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCCCCC-eeee
Q 035899           14 MAEEALVVRLFNSENSPNWNQLA------NLSVSKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDA-AFVP   85 (131)
Q Consensus        14 ~~~~~l~~~g~n~~gqlg~~~~~------~~~~~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~~~~-~~~P   85 (131)
                      ..++.+|.||.|.+||||.....      +..++..+|++|+||.+|+ ||+++|+||+||.|.+||||+++... ...|
T Consensus       259 ~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p  338 (423)
T 3mvd_K          259 SQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKP  338 (423)
T ss_dssp             TTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEE
T ss_pred             CCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCc
Confidence            47888999999999999984322      1223345799999999999 56679999999999999999998765 5789


Q ss_pred             EEcCCCCCceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899           86 TLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEE  125 (131)
Q Consensus        86 ~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~  125 (131)
                      ++++.+..+|++|+||..|+++|+++|+||+||.|.+||.
T Consensus       339 ~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqL  378 (423)
T 3mvd_K          339 TIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQL  378 (423)
T ss_dssp             EECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCTTSCS
T ss_pred             eEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCCCCCC
Confidence            9998776689999999999999999999999999988774

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=99.95  E-value=4.5e-27  Score=184.89  Aligned_cols=118  Identities=23%  Similarity=0.245  Sum_probs=103.6

Q ss_pred             EEEEEecCCCeEEEEecCCCCCCCCCCCCceec-------CCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCCC
Q 035899            8 LYIFSLMAEEALVVRLFNSENSPNWNQLANLSV-------SKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHE   79 (131)
Q Consensus         8 l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~-------~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~~   79 (131)
                      -+++.+.+++.+|.||.|.+||||..+......       ...+|++|+||.+|+ ||+++|+||+||.|.+||||+++.
T Consensus       235 ~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~  314 (406)
T 4d9s_A          235 RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNN  314 (406)
T ss_dssp             SEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS
T ss_pred             CcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCC
Confidence            357788899999999999999999987655433       245699999999999 566799999999999999999998


Q ss_pred             CCeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899           80 DAAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRCLILGEE  125 (131)
Q Consensus        80 ~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~  125 (131)
                      .....|++++.+.. +|++|+||..|++||+++|+||+||+|..||.
T Consensus       315 ~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqL  361 (406)
T 4d9s_A          315 LDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQL  361 (406)
T ss_dssp             SCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred             CCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCcc
Confidence            88899999986555 89999999999999999999999999887764

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.1e-27  Score=184.75  Aligned_cols=118  Identities=22%  Similarity=0.204  Sum_probs=104.9

Q ss_pred             EEEEEecCCCeEEEEecCCCCCCCCCCCCceec-------CCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCCC
Q 035899            8 LYIFSLMAEEALVVRLFNSENSPNWNQLANLSV-------SKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHE   79 (131)
Q Consensus         8 l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~-------~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~~   79 (131)
                      -++..+.+++.+|.||.|.+||||.........       .+.+|++|+||.+|+ ||+++|+||+||.|.+||||++..
T Consensus       223 ~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~  302 (389)
T 3kci_A          223 AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD  302 (389)
T ss_dssp             CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSC
T ss_pred             cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCC
Confidence            467788899999999999999999987654332       245699999999999 566799999999999999999999


Q ss_pred             CCeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899           80 DAAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRCLILGEE  125 (131)
Q Consensus        80 ~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~  125 (131)
                      .....|++|+.+.+ +|++|+||..|+++|+++|+||+||.|.+||.
T Consensus       303 ~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqL  349 (389)
T 3kci_A          303 DHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQL  349 (389)
T ss_dssp             CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTT
T ss_pred             ccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcC
Confidence            88999999998877 89999999999999999999999999987774

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.5e-27  Score=185.32  Aligned_cols=119  Identities=21%  Similarity=0.282  Sum_probs=104.2

Q ss_pred             eEEEEEecCCCeEEEEecCCCCCCCCCCCCceecC-------C--CeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCC
Q 035899            7 ELYIFSLMAEEALVVRLFNSENSPNWNQLANLSVS-------K--RFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGF   76 (131)
Q Consensus         7 ~l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~~-------~--~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~   76 (131)
                      +-+++.+.+++.||.||.|.+||||+++......|       .  .++++|+||.+|+ ||+++|+||+||.|.+||||+
T Consensus        62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~  141 (389)
T 3kci_A           62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH  141 (389)
T ss_dssp             TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred             CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence            44678899999999999999999999876544322       2  3457899999999 566799999999999999999


Q ss_pred             CCCCCeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899           77 GHEDAAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRCLILGEE  125 (131)
Q Consensus        77 g~~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~  125 (131)
                      ++......|++|+.+.+ +|++|+||..|+++|+++|+||+||.|.+||.
T Consensus       142 g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqL  191 (389)
T 3kci_A          142 GNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRL  191 (389)
T ss_dssp             SSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTT
T ss_pred             CCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCc
Confidence            99988999999998887 89999999999999999999999999887764

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=99.95  E-value=1.3e-26  Score=182.20  Aligned_cols=120  Identities=18%  Similarity=0.204  Sum_probs=106.1

Q ss_pred             eEEEEEecCCCeEEEEecCCCCCCCCCCCCceec-------CCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCC
Q 035899            7 ELYIFSLMAEEALVVRLFNSENSPNWNQLANLSV-------SKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGH   78 (131)
Q Consensus         7 ~l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~-------~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~   78 (131)
                      .-++..+.+++.+|.||.|.+||||+.+......       ++.+|++|+||.+|+ |++++|+||+||.|.+||||+++
T Consensus       130 ~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~  209 (406)
T 4d9s_A          130 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD  209 (406)
T ss_dssp             SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred             hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCC
Confidence            3467788999999999999999999987655432       245799999999999 56679999999999999999999


Q ss_pred             CCCeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecCCCCCCcc
Q 035899           79 EDAAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRCLILGEEE  126 (131)
Q Consensus        79 ~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~~  126 (131)
                      ......|++++.+.. +|++|+||..|+++|+++|+||+||+|.+||..
T Consensus       210 ~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG  258 (406)
T 4d9s_A          210 RTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLG  258 (406)
T ss_dssp             SCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTC
T ss_pred             CCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCC
Confidence            999999999998776 999999999999999999999999999888753

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B

Probab=99.94  E-value=1.4e-26  Score=182.03  Aligned_cols=117  Identities=19%  Similarity=0.154  Sum_probs=101.9

Q ss_pred             EEEEEecCCCeEEEEecCCCCCCCCCCCCceecC-------C--CeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCC
Q 035899            8 LYIFSLMAEEALVVRLFNSENSPNWNQLANLSVS-------K--RFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFG   77 (131)
Q Consensus         8 l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~~-------~--~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g   77 (131)
                      -+++.+.+++.+|.||.|.+||||.+.......|       .  .+|++|+||.+|+ |++++|+||+||.|.+||||++
T Consensus       242 ~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g  321 (413)
T 1a12_A          242 YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG  321 (413)
T ss_dssp             TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSC
T ss_pred             CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCC
Confidence            3678889999999999999999999876543322       2  4599999999999 5667999999999999999999


Q ss_pred             -CCCCeeeeEEcCCCCCceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899           78 -HEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEE  125 (131)
Q Consensus        78 -~~~~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~  125 (131)
                       +......|++|+.+. +|++|+||..|+++|+++|+||+||.|.+||.
T Consensus       322 ~~~~~~~~P~~v~~l~-~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqL  369 (413)
T 1a12_A          322 EGAEEKSIPTLISRLP-AVSSVACGASVGYAVTKDGRVFAWGMGTNYQL  369 (413)
T ss_dssp             TTCCCEEEEEECCSSS-SEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred             CCCccccCCEEecccC-ceeEEEECcceEEEEeCCCCEEEecCCCCCCC
Confidence             456678999999887 89999999999999999999999999887764

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}

Probab=99.94  E-value=9.8e-26  Score=180.37  Aligned_cols=120  Identities=21%  Similarity=0.160  Sum_probs=101.6

Q ss_pred             eEEEEEecCCCeEEEEecCCCCCCCCCCCCc--------eecCCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCC
Q 035899            7 ELYIFSLMAEEALVVRLFNSENSPNWNQLAN--------LSVSKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFG   77 (131)
Q Consensus         7 ~l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~--------~~~~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g   77 (131)
                      .-++..+.+++.+|.||.|.+||||......        ..+....|++|+||.+|+ |++.+|+||+||.|.+||||.+
T Consensus       213 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~  292 (473)
T 3of7_A          213 KDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVS  292 (473)
T ss_dssp             SSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCC
T ss_pred             CCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCC
Confidence            3467788899999999999999999875432        222235799999999999 5667999999999999999998


Q ss_pred             CCC----CeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecCCCCCCcc
Q 035899           78 HED----AAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRCLILGEEE  126 (131)
Q Consensus        78 ~~~----~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~~  126 (131)
                      ...    ....|++|+.+.+ +|++|+||..|+++|+++|+||+||.|.+||..
T Consensus       293 ~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG  346 (473)
T 3of7_A          293 EDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVG  346 (473)
T ss_dssp             SCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTC
T ss_pred             CcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccC
Confidence            754    3568999998776 899999999999999999999999998877643

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B

Probab=99.93  E-value=9.9e-26  Score=177.18  Aligned_cols=118  Identities=13%  Similarity=0.120  Sum_probs=100.5

Q ss_pred             EEEEEecCCCeEEEEecCCCCCCCCCCCC---------------c--eec------CCCeEEEEEccCcceE-EEeCCeE
Q 035899            8 LYIFSLMAEEALVVRLFNSENSPNWNQLA---------------N--LSV------SKRFSNSSSCGLFHSG-LVVNGKL   63 (131)
Q Consensus         8 l~~~~~~~~~~l~~~g~n~~gqlg~~~~~---------------~--~~~------~~~~i~~is~G~~hsa-l~~~G~v   63 (131)
                      -++..+.+++.+|.||.|.+||||.....               +  +.+      ...+|++|+||.+|++ ++++|+|
T Consensus       174 ~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v  253 (413)
T 1a12_A          174 DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHV  253 (413)
T ss_dssp             SEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCE
T ss_pred             ceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCE
Confidence            36778889999999999999999985321               1  111      2357999999999994 6679999


Q ss_pred             EEEeCCCCCCCCCCCCCCeeeeEEcCCCCC---ceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899           64 WIWGKGDGGRLGFGHEDAAFVPTLNPYLDD---HVRCIALGGVHSIALTSLAVEECNRCLILGEE  125 (131)
Q Consensus        64 y~wG~n~~GqLG~g~~~~~~~P~~v~~l~~---~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~  125 (131)
                      |+||.|.+||||.+.......|++|+.+.+   +|++|+||..|+++|+++|+||+||.|.+||.
T Consensus       254 ~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqL  318 (413)
T 1a12_A          254 YGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL  318 (413)
T ss_dssp             EEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTT
T ss_pred             EEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCcc
Confidence            999999999999999888899999987764   59999999999999999999999999877664

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=99.93  E-value=2.4e-25  Score=175.19  Aligned_cols=117  Identities=20%  Similarity=0.170  Sum_probs=97.2

Q ss_pred             EEEEecCCCeEEEEecCCCCCCCCCCCCc--eecC-----CCeEEEEEccCcce-EEEeCCeEEEEeC--CCCCCCCCCC
Q 035899            9 YIFSLMAEEALVVRLFNSENSPNWNQLAN--LSVS-----KRFSNSSSCGLFHS-GLVVNGKLWIWGK--GDGGRLGFGH   78 (131)
Q Consensus         9 ~~~~~~~~~~l~~~g~n~~gqlg~~~~~~--~~~~-----~~~i~~is~G~~hs-al~~~G~vy~wG~--n~~GqLG~g~   78 (131)
                      ++..+.+++.||.||.|.+||||......  ...|     ..+|++|+||.+|+ ||+++|+||+||.  |.+||||.+.
T Consensus        86 h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~  165 (423)
T 3mvd_K           86 HNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTI  165 (423)
T ss_dssp             EEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBT
T ss_pred             eEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCC
Confidence            45566678899999999999999876532  1111     24689999999999 5667999999999  9999999998


Q ss_pred             CCCeeeeEEcCCCCCceEEEeccccceEEEecCCcEEEecCCCCCCcc
Q 035899           79 EDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEEE  126 (131)
Q Consensus        79 ~~~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~~  126 (131)
                      ......|.++.... +|++|+||..|+++|+++|+||+||.|.+||..
T Consensus       166 ~~~~~~p~~~~~~~-~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG  212 (423)
T 3mvd_K          166 DGNKRTPIDLMEGT-VCCSIASGADHLVILTTAGKVFTVGCAEQGQLG  212 (423)
T ss_dssp             TBCEEEEEESSTTC-CEEEEEECSSEEEEEETTSCEEEEECCTTSTTS
T ss_pred             CCCCceeeEecCCC-cEEEEecCCCeEEEEecCCeEEEeeCCcCCccC
Confidence            88888887775333 899999999999999999999999998887743

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=6e-25  Score=175.82  Aligned_cols=118  Identities=20%  Similarity=0.167  Sum_probs=97.6

Q ss_pred             eEEEEEecCCCeEEEEecCCCCCCCCCCCC----ce----ec---CCCeEEEEEccCcceE-EEeCCeEEEEeCCCCCCC
Q 035899            7 ELYIFSLMAEEALVVRLFNSENSPNWNQLA----NL----SV---SKRFSNSSSCGLFHSG-LVVNGKLWIWGKGDGGRL   74 (131)
Q Consensus         7 ~l~~~~~~~~~~l~~~g~n~~gqlg~~~~~----~~----~~---~~~~i~~is~G~~hsa-l~~~G~vy~wG~n~~GqL   74 (131)
                      .-+++.+.+++.+|.||.|.+||||+....    ..    .+   .+.+|++|+||.+|++ |+++|+||+||.|.+|||
T Consensus       266 ~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqL  345 (473)
T 3of7_A          266 ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEV  345 (473)
T ss_dssp             SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTT
T ss_pred             CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCcc
Confidence            346788899999999999999999987643    11    11   2357999999999995 667999999999999999


Q ss_pred             CCCCCC--------------CeeeeEEcCCCCCceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899           75 GFGHED--------------AAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEE  125 (131)
Q Consensus        75 G~g~~~--------------~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~  125 (131)
                      |++...              ....|++++.+. +|++|+||..|++||+++|+||+||.|.+||.
T Consensus       346 G~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~-~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqL  409 (473)
T 3of7_A          346 GIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP-KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAV  409 (473)
T ss_dssp             CCCGGGCCTTCEECTTSCEEEEEEEEECCSSC-CEEEEEECSSEEEEEETTSCEEEEECCTTCTT
T ss_pred             CCCccccccccccccCCceeeeccCcccCCCC-ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCC
Confidence            987531              235788888765 79999999999999999999999999877764

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=99.89  E-value=9.2e-23  Score=154.02  Aligned_cols=100  Identities=18%  Similarity=0.143  Sum_probs=77.2

Q ss_pred             EEEEEecCCCeEEEEecCCCCCCCCCCCCceecCCCeEEEEEccCcceEEEeCCeEEEEeCCCCCCCCCCCCCCeeeeEE
Q 035899            8 LYIFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTL   87 (131)
Q Consensus         8 l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~~~~~i~~is~G~~hsal~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~   87 (131)
                      -++..+. ++.||.||.|.+||||++...     ..+|++|+||.+|+++++||+||+||.|.+||||.        |++
T Consensus        34 ~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~-----~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg~--------P~~   99 (282)
T 3qhy_B           34 FHGLALK-GGKVLGWGANLNGQLTMPAAT-----QSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTV--------PAE   99 (282)
T ss_dssp             SEEEEEE-TTEEEEEECCSSSTTSCCGGG-----GSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCC--------CGG
T ss_pred             CeEEEEE-CCEEEEEeCCCCCCCCCCccC-----CCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCCC--------Ccc
Confidence            3556665 888999999999999865321     23578899999998544699999999999999985        333


Q ss_pred             cCCCCCceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899           88 NPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEE  125 (131)
Q Consensus        88 v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~  125 (131)
                      +.  . +|++|+||..|+++|+ +|+||+||.|.+||.
T Consensus       100 ~~--~-~v~~ia~G~~hs~al~-~G~v~~wG~n~~gql  133 (282)
T 3qhy_B          100 AR--S-GVDAIAAGAWASYALK-DGKVIAWGDDSDGQT  133 (282)
T ss_dssp             GS--S-SEEEEEEETTEEEEEE-TTEEEEEECCTTSTT
T ss_pred             cC--C-CeEEEECcCCEEEEEe-CCeEEEecCCCCCcC
Confidence            32  1 6888888888888888 888888888887764

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=99.87  E-value=1.2e-21  Score=147.95  Aligned_cols=93  Identities=18%  Similarity=0.125  Sum_probs=55.6

Q ss_pred             CCeEEEEecCCCCCCCCCCCCceecCCCeEEEEEccCcceEEEeCCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCCce
Q 035899           16 EEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHV   95 (131)
Q Consensus        16 ~~~l~~~g~n~~gqlg~~~~~~~~~~~~~i~~is~G~~hsal~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~i   95 (131)
                      ++.+|.||.|.+||++++...     ..+|++|+||.+|++++++|+||+||.|.+||||.        |.++.   .+|
T Consensus       119 ~G~v~~wG~n~~gqlg~~~~~-----~~~i~~i~~G~~~~~~l~~G~v~~wG~n~~gqlg~--------p~~~~---~~v  182 (282)
T 3qhy_B          119 DGKVIAWGDDSDGQTTVPAEA-----QSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTV--------PAEAQ---SGV  182 (282)
T ss_dssp             TTEEEEEECCTTSTTSCCGGG-----GSSEEEEEECSSEEEEEETTEEEEEECCTTSTTSC--------CGGGG---SSE
T ss_pred             CCeEEEecCCCCCcCCCCccC-----CCCeEEEEcccCEEEEEECCEEEEecCCCCCCCCC--------ceecC---CCe
Confidence            455566666666666543211     12355666666665433356666666666666652        22121   168


Q ss_pred             EEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899           96 RCIALGGVHSIALTSLAVEECNRCLILGEE  125 (131)
Q Consensus        96 ~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~  125 (131)
                      ++|+||..|+++| ++|+||+||.|.+||.
T Consensus       183 ~~i~~G~~hs~al-~~G~v~~wG~n~~gql  211 (282)
T 3qhy_B          183 DDVAGGIFHSLAL-KDGKVIAWGDNRYKQT  211 (282)
T ss_dssp             EEEEECSSEEEEE-ETTEEEEEECCTTSTT
T ss_pred             EEEEecCCEEEEE-ECCeEEEEECCCCCCC
Confidence            8888888888888 7888888888777764

>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}

Probab=96.24  E-value=0.0063  Score=45.66  Aligned_cols=64  Identities=14%  Similarity=0.127  Sum_probs=51.8

Q ss_pred             eEEEEEccCcceEEE-eCCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCCceEEEeccccceEEEecCCcEEEecC
Q 035899           44 FSNSSSCGLFHSGLV-VNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRC  119 (131)
Q Consensus        44 ~i~~is~G~~hsal~-~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~  119 (131)
                      .+-.||.-+.|..++ -|+++++||+++.||+-....            .++..++++|..+++-+..-..+--||.
T Consensus       310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t------------agPfla~~AG~~fTVTVn~~nyv~FWGD  374 (400)
T 4gbf_A          310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH------------AGPYIQLAAGHNFTVTVNTLNQVMFWGD  374 (400)
T ss_dssp             CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG------------GCCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred             ccccccccccceEEEecCceeEEeccCCCCceecCCC------------cchHHhHhccCCeEEEEeceeeEEEecC
Confidence            355678888898665 499999999999999854322            1268899999999999999999999995

>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}

Probab=93.88  E-value=0.14  Score=38.51  Aligned_cols=54  Identities=13%  Similarity=0.124  Sum_probs=39.5

Q ss_pred             CCCeEEEEecCCCCCCCCCCCCceecCCCeEEEEEccCcceEEE-eCCeEEEEeCCCCCCC
Q 035899           15 AEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLV-VNGKLWIWGKGDGGRL   74 (131)
Q Consensus        15 ~~~~l~~~g~n~~gqlg~~~~~~~~~~~~~i~~is~G~~hsal~-~~G~vy~wG~n~~GqL   74 (131)
                      .+++|+..|.|++||+-++....      +..++++|..+++-+ .-..+--||......|
T Consensus       326 gd~el~sFG~~sNGQ~~ip~tag------Pfla~~AG~~fTVTVn~~nyv~FWGDSPDNSL  380 (400)
T 4gbf_A          326 GDGQIAFFGNNDNGQCDVDDHAG------PYIQLAAGHNFTVTVNTLNQVMFWGDSPDNSL  380 (400)
T ss_dssp             TTTCCCEEECCTTSTTCCCGGGC------CEEEEEECSSEEEEEETTCCEEEEECCTTSTT
T ss_pred             cCceeEEeccCCCCceecCCCcc------hHHhHhccCCeEEEEeceeeEEEecCCCCcce
Confidence            34456666678889988775443      256899999999755 5789999998866554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	2e-09
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	1e-08
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	0.004
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	4e-04

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 2e-09
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 49  SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTL---NPYLDDHVRCIALGGVH 104
           +CG      +  +G+++ WG G   +LG G ++ A+ P         +  V  ++ GG H
Sbjct: 331 ACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQH 390

Query: 105 SIALTS 110
           ++ L  
Sbjct: 391 TVLLVK 396

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 1e-08
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 51  GLFHSGLVV-NGKLWIWGKGDGGRLGFGHE-DAAFVPTLNPYLDDHVRCIALGGVHSIAL 108
            + H       G +   G+GD G+LG G        P L    +D V     GG+H++ L
Sbjct: 4   KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED-VVQAEAGGMHTVCL 62

Query: 109 TS 110
           + 
Sbjct: 63  SK 64

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (75), Expect = 0.004
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 49 SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGH 78
            G  H+  L  +G+++ +G  D G LG   
Sbjct: 53 EAGGMHTVCLSKSGQVYSFGCNDEGALGRDT 83

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 36.3 bits (82), Expect = 4e-04
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 49  SCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPT 86
           + G ++S  + NGK+  WG             ++    
Sbjct: 227 ASGEWYSLALKNGKVIAWGSSRTAPSSVQSGVSSIEAG 264

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1a12a_	401	Regulator of chromosome condensation RCC1 {Human (	99.9
d1a12a_	401	Regulator of chromosome condensation RCC1 {Human (	99.89
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	99.81
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	99.77
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	83.8

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.2e-24  Score=163.72  Aligned_cols=109  Identities=17%  Similarity=0.120  Sum_probs=85.0

Q ss_pred             CCCeEEEEecCCCCCCCCCCCC-ceec----C-CCeEEEEEccCcceE-EEeCCeEEEEeCCCCCCCCCCCCCCe--eee
Q 035899           15 AEEALVVRLFNSENSPNWNQLA-NLSV----S-KRFSNSSSCGLFHSG-LVVNGKLWIWGKGDGGRLGFGHEDAA--FVP   85 (131)
Q Consensus        15 ~~~~l~~~g~n~~gqlg~~~~~-~~~~----~-~~~i~~is~G~~hsa-l~~~G~vy~wG~n~~GqLG~g~~~~~--~~P   85 (131)
                      .+|.||.||.|..||||+++.. ....    + ...|++|+||.+|++ |+++|+||+||.|.+||||++.....  ..|
T Consensus        13 ~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~~   92 (401)
T d1a12a_          13 EPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVP   92 (401)
T ss_dssp             CCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSC
T ss_pred             CCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCCCeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcccccccccccc
Confidence            4555666666999999997442 2222    2 246999999999985 66799999999999999999976654  455


Q ss_pred             EEcCCCCCceEEEeccccceEEEecCCcEEEecCCCCCC
Q 035899           86 TLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGE  124 (131)
Q Consensus        86 ~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~  124 (131)
                      ..+.... +|++|+||..|+++++++|+||+||.+..++
T Consensus        93 ~~~~~~~-~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~  130 (401)
T d1a12a_          93 GKVELQE-KVVQVSAGDSHTAALTDDGRVFLWGSFRDNN  130 (401)
T ss_dssp             EECCCCS-CEEEEEECSSEEEEEETTSCEEEEECEEETT
T ss_pred             ccccccc-ceeeecccccceeeccccccceecccccccc
Confidence            5554333 8999999999999999999999999875443

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-22  Score=155.10  Aligned_cols=117  Identities=20%  Similarity=0.154  Sum_probs=100.3

Q ss_pred             EEEEecCCCeEEEEecCCCCCCCCCCCCceec---------CCCeEEEEEccCcceE-EEeCCeEEEEeCCCCCCCCCCC
Q 035899            9 YIFSLMAEEALVVRLFNSENSPNWNQLANLSV---------SKRFSNSSSCGLFHSG-LVVNGKLWIWGKGDGGRLGFGH   78 (131)
Q Consensus         9 ~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~---------~~~~i~~is~G~~hsa-l~~~G~vy~wG~n~~GqLG~g~   78 (131)
                      .++.+..++.++.|+.|.+++++.........         ....++.+++|..|++ +.++|+||+||.|.+||||.++
T Consensus       231 ~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~  310 (401)
T d1a12a_         231 FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE  310 (401)
T ss_dssp             EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCT
T ss_pred             eEEEEecCCeEeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCc
Confidence            56778899999999999999999876554321         1355889999999995 6679999999999999999987


Q ss_pred             C-CCeeeeEEcCCCCCceEEEeccccceEEEecCCcEEEecCCCCCCcc
Q 035899           79 E-DAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEEE  126 (131)
Q Consensus        79 ~-~~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~~  126 (131)
                      . .....|++|+.+. +|++|+||..|++||+++|+||+||.|.+||..
T Consensus       311 ~~~~~~~P~~i~~~~-~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG  358 (401)
T d1a12a_         311 GAEEKSIPTLISRLP-AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLG  358 (401)
T ss_dssp             TCCCEEEEEECCSSS-SEEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred             ccccccCCEEcCCCC-CeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCC
Confidence            5 4577899998776 899999999999999999999999999888753

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=99.81  E-value=7.3e-20  Score=134.78  Aligned_cols=101  Identities=19%  Similarity=0.122  Sum_probs=81.7

Q ss_pred             EEEEecCCCeEEEEecCCCCCCCCCCCCceecCCCeEEEEEccCcceEEEeCCeEEEEeCCCCCCCCCCCCCCeeeeEEc
Q 035899            9 YIFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLN   88 (131)
Q Consensus         9 ~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~~~~~i~~is~G~~hsal~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v   88 (131)
                      +.+.+..++.++.|+.|..+|+..+...     ..+|++|+||.+|+++++||+||+||.|.+|||+..          +
T Consensus       153 ~~~~~~~~g~~~~~G~~~~g~~~~~~~~-----~~~v~~Is~G~~h~~~l~dG~v~~WG~n~~Gql~~~----------~  217 (273)
T d1jtdb_         153 YTALAVKNGGVIAWGDNYFGQTTVPAEA-----QSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVP----------T  217 (273)
T ss_dssp             SEEEEEETTEEEEEECCTTSTTSCCGGG-----SSSEEEEEECSSEEEEEETTEEEEEECCTTSTTCCC----------G
T ss_pred             eeeeeecccceeEeecccCCcccccccc-----cCCccceeccceeeEEEecCcEEEcCCCCCCccCCC----------c
Confidence            3455667888999999999998654322     246889999999997667999999999999999863          2


Q ss_pred             CCCCCceEEEeccccceEEEecCCcEEEecCCCCCCcc
Q 035899           89 PYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEEE  126 (131)
Q Consensus        89 ~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~~  126 (131)
                      +.+. +|++|+||..|+++|+ +|+||+||.+..|+..
T Consensus       218 ~~~~-~v~~I~~G~~~~~~l~-~g~v~~WG~~~~~~~~  253 (273)
T d1jtdb_         218 EALS-GVSAIASGEWYSLALK-NGKVIAWGSSRTAPSS  253 (273)
T ss_dssp             GGGS-SCCEEEECSSCEEEEE-TTEEEEESTTCCCCGG
T ss_pred             cCCC-CcEEEEeCcceEEEEE-CCEEEEECCCCCCCCC
Confidence            2233 6889999999999996 8999999999988754

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=99.77  E-value=5.8e-19  Score=129.86  Aligned_cols=110  Identities=20%  Similarity=0.146  Sum_probs=82.0

Q ss_pred             EEEecCCCeEEEEecCCCCCCCCCCCCceecCCCeEEEEEccCcceEEEeCCeEEEEeCCCCCCCCCCCCCC----e---
Q 035899           10 IFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDA----A---   82 (131)
Q Consensus        10 ~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~~~~~i~~is~G~~hsal~~~G~vy~wG~n~~GqLG~g~~~~----~---   82 (131)
                      ...+. ++.||.||.|.+||||++....     ..+++|+||..|+++++||++|+||.+.+||++......    .   
T Consensus        38 ~~al~-dG~v~~wG~N~~GQlG~~~~~~-----~~v~~v~~G~~~~~al~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~  111 (273)
T d1jtdb_          38 GLALK-GGKVLGWGANLNGQLTMPAATQ-----SGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAA  111 (273)
T ss_dssp             EEEEE-TTEEEEEECCTTSTTSCCGGGG-----SCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCCGGGGSSCCEEEE
T ss_pred             EEEEE-CCEEEEEeCCCCCceeeeeccc-----ccceEEecCCCceeeeeeeeeeccCCCcceeeccccccccceeEEee
Confidence            34555 7999999999999999876543     346799999999966679999999999999988542100    0   


Q ss_pred             ------------------------eee-----------------------------------EEcCCCCC-ceEEEeccc
Q 035899           83 ------------------------FVP-----------------------------------TLNPYLDD-HVRCIALGG  102 (131)
Q Consensus        83 ------------------------~~P-----------------------------------~~v~~l~~-~i~~ia~G~  102 (131)
                                              ..|                                   ..++.... +|++|+||.
T Consensus       112 ~~~~~~~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~  191 (273)
T d1jtdb_         112 GAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGI  191 (273)
T ss_dssp             ETTEEEEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECS
T ss_pred             ecccccccccccceecccCCCCceeeeccCCceEEEEeccceeeeeecccceeEeecccCCcccccccccCCccceeccc
Confidence                                    000                                   00111112 799999999


Q ss_pred             cceEEEecCCcEEEecCCCCCCcc
Q 035899          103 VHSIALTSLAVEECNRCLILGEEE  126 (131)
Q Consensus       103 ~hs~~lt~~g~vy~wG~~~~G~~~  126 (131)
                      .|+++|+ ||+||+||.|.+||..
T Consensus       192 ~h~~~l~-dG~v~~WG~n~~Gql~  214 (273)
T d1jtdb_         192 FHSLALK-DGKVIAWGDNRYKQTT  214 (273)
T ss_dssp             SEEEEEE-TTEEEEEECCTTSTTC
T ss_pred             eeeEEEe-cCcEEEcCCCCCCccC
Confidence            9999998 7999999999998854

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=83.80  E-value=0.97  Score=31.53  Aligned_cols=66  Identities=17%  Similarity=0.075  Sum_probs=36.4

Q ss_pred             CcceEE-EeCCeEEEEeCCCCCCCCCCCCC----Cee-----eeEEcCCCCCceEEEeccccceE-EEecCCcEEEecCC
Q 035899           52 LFHSGL-VVNGKLWIWGKGDGGRLGFGHED----AAF-----VPTLNPYLDDHVRCIALGGVHSI-ALTSLAVEECNRCL  120 (131)
Q Consensus        52 ~~hsal-~~~G~vy~wG~n~~GqLG~g~~~----~~~-----~P~~v~~l~~~i~~ia~G~~hs~-~lt~~g~vy~wG~~  120 (131)
                      ..|+++ +.||+||..|-...+........    ...     +-+.+..+.  +    .-..|++ +|..||+||+.|-+
T Consensus       290 ~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~--~----~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         290 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS--I----VRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS--S----CCCTTEEEEECTTSCEEEEECC
T ss_pred             ccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCC--C----cccceEEEEECCCCEEEEEeCC
Confidence            356654 45999999997766544332211    011     111222111  1    1235765 46789999999876


Q ss_pred             CCC
Q 035899          121 ILG  123 (131)
Q Consensus       121 ~~G  123 (131)
                      ..+
T Consensus       364 ~~~  366 (387)
T d1k3ia3         364 LCG  366 (387)
T ss_dssp             CCT
T ss_pred             CcC
Confidence            544