Citrus Sinensis ID: 036378

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-----
METDSDSGGSHISATPPRCQNPPSPPPLQTNTLSSSKSKVRIRRSFSQNPSISAFKSLETLPAGFCFRLASFTKIQKPSLRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAKLRKCNGEGNFVRLNLNNNKRKFANKGKRNKSFRGKLSYRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHccccEEEEccccccccHHcHHHHHcccccEEEEcHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHccccccEEEEEcccccccccccccHHHHcccHHHHHHHcccccEEEEcccccHHHHHHHHHHcccccccEEEccccccccEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEEccccccHHHHHHHcccccccccccEEEEEEccccHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccHHHHcccHHHHHHHHHHHHHcccEEEEEEcccEEEEEEEEEccccHHHccccHHHHHHHHHHccccccEEEEcHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccHHHHHccccc
ccccccccccEEEccccccccccccccccccccccccccccccccccccccHHHHccccEccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHccEEEcccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHcccHcEEEcccccccHHHHHHHHHcccEEEEEEcHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHccccccHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHccccccEEEEcccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHcccccEEEEEHHHHccccccccEEEEEEcccccHHHHHHHHccccccccccEEEEEEccccHHHHHHHHccccccHHHHHHHHHHHHHHcccccccEEEEcHHHHHccccccHHHHHHHHHHHHHccccccEHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcHHHHHHHccccHHHHHHHHHHHHHcccEEEEEcccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccHHHHccccc
metdsdsggshisatpprcqnppsppplqtntlsssksKVRIRRSfsqnpsisafksletlpagfcfrlasftkiqkpslrfendqslptpsnpqgineIKSDAFAKKKKQinlvsvdvplppaklrkcngegnfvrlnLNNNKRkfankgkrnksfrgklsyRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKkstmlvlptgagkslcyqipamilpgltlVVCPLVALMIDqlrhlppvihggflsssqrpeEVAETIRLIQVGAIKVLfvsperflnadfLSIFTATSLISLVVVDeahcvsewshnfrpSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSlsgnnrqnersaYVDEVFSFHRSSKHYYILQISGKHFETDLISrylcdnsisvksyhsgipakdrsRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFtngmnshgKLCSLVKEsasrkfdiKEEVMLTLLTCLELGEIQYLQLLPElkvtctlnfhkttptlladKDKMVATILKKSetkqgqyvfdiptvansigatTIDVSNQLLNLKMRGEityelkdpaycytivevpsdFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVcekthgcngslhtpclqknildyfrgddncdvpnkigqsspflRADIKVFLQsnlnakftPRAVARILhgiaspaypstiwskthf
metdsdsggshisatpprcqnppsppPLQTNTLSSSKSKVRIRRSfsqnpsisafksleTLPAGFCFRLASFTKIQKPSLRfendqslptpsnpqgiNEIKSDAFAKKKKQInlvsvdvplppaklrkcngegnfvrlnlnnnkrkfankgkrnksfrgklsyrrtaselelvEEAVRavrdeasdenlgrLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSewshnfrpsYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSlsgnnrqnerSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKttptlladkdKMVATILKksetkqgqyvfDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGiaspaypstiwskthf
METDSDSGGSHISATPPRCqnppsppplqtntlssskskvrirrsfsQNPSISAFKSLETLPAGFCFRLASFTKIQKPSLRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAKLRKCNGEGNFVRLNLNNNKRKFANKGKRNKSFRGKLSYRRTaselelveeavravrdeasDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMrlrasllrarlNVECILAMtatattttLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF
******************************************************FKSLETLPAGFCFRLASFTKI************************************INLVSVDVPLPPAKLRKCNGEGNFVRLNL**********************************************ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSS*****EVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQL**************AYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIW*****
************************************************************************************************************************************************************************************************LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNN*QNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKT*********PCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF
********************************************SFSQNPSISAFKSLETLPAGFCFRLASFTKIQKPSLRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAKLRKCNGEGNFVRLNLNNNKRKFANKGKRNKSFRGKLSYRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF
***********************************************QNPSISAFKSLETLPAGFCFRLASF*************************************************************NFVRLNLNNNKRKFANKGKRNKSFRGKLSYRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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METDSDSGGSHISATPPRCQNPPSPPPLQTNTLSSSKSKVRIRRSFSQNPSISAFKSLETLPAGFCFRLASFTKIQKPSLRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAKLRKCNGEGNFVRLNLNNNKRKFANKGKRNKSFRGKLSxxxxxxxxxxxxxxxxxxxxxASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query815 2.2.26 [Sep-21-2011]
Q0WVW7911 ATP-dependent DNA helicas yes no 0.985 0.881 0.563 0.0
Q75NR71216 ATP-dependent DNA helicas yes no 0.733 0.491 0.322 1e-76
O947611208 ATP-dependent DNA helicas yes no 0.712 0.480 0.310 1e-74
O34748591 Probable ATP-dependent DN yes no 0.398 0.549 0.370 2e-61
Q9VGI8 1487 Bloom syndrome protein ho no no 0.428 0.234 0.357 3e-58
P71359619 ATP-dependent DNA helicas yes no 0.412 0.542 0.362 5e-56
P15043609 ATP-dependent DNA helicas N/A no 0.406 0.543 0.363 1e-55
Q9CL21632 ATP-dependent DNA helicas yes no 0.401 0.517 0.355 2e-55
P40724609 ATP-dependent DNA helicas yes no 0.406 0.543 0.357 1e-53
Q9FT72713 ATP-dependent DNA helicas no no 0.4 0.457 0.371 3e-52
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana GN=RECQL5 PE=2 SV=2 Back     alignment and function desciption
 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/891 (56%), Positives = 618/891 (69%), Gaps = 88/891 (9%)

Query: 1   METDSDSGGSHISATPPRCQNPPSPPPLQTN-----------TLSSSKSKVRIRRSFSQN 49
           M+ DSDS GSH+SATPPR   P SPP LQ+            T SSS+SK +       N
Sbjct: 1   MDFDSDSDGSHVSATPPRDSFPSSPPQLQSPAKHVPPVSRKMTSSSSRSKPKAPTHPPPN 60

Query: 50  PSISA--------------------FKSLETLPAG----------FCFRLASFTKIQKPS 79
           PS  A                    F+  ++ PA            C R ASFT ++K  
Sbjct: 61  PSQEAPVPSPYPPPPPPSPLFTNLPFRICQSQPARFSSSVSSFSRLCSR-ASFTSVEK-- 117

Query: 80  LRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAK----LRKCNGEGNF 135
           L+ +    +P P     + E+ +   + ++K  NL++  +  PP K        NGEGNF
Sbjct: 118 LKSDGVDFVPEPP----LVEVIAPPKSVRRKPPNLITDTITSPPVKPMVFRSNGNGEGNF 173

Query: 136 VRLNLNN-------NKRKFANKGKRNKSFRGKLSYRRTA-----------SELEL----- 172
           V+LNLN        +K K  +K + + SFRGK   ++ A           S+L+      
Sbjct: 174 VKLNLNGKRGKKFPSKYKGVSKSRSSYSFRGKRYKKKEADGDGESLLEEESDLQKQIEDE 233

Query: 173 -------VEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPT 225
                  VE+A+ AV+ EASDENL +LL LVYGYDSFRDGQL+AIKM+L   STMLVLPT
Sbjct: 234 ANGFISSVEDAILAVKTEASDENLTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPT 293

Query: 226 GAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRL 285
           GAGKSLCYQIPAMILPG+TLVV PLV+LMIDQL+HLP +I GG LSSSQRPEE  ET+R 
Sbjct: 294 GAGKSLCYQIPAMILPGITLVVSPLVSLMIDQLKHLPSIIKGGLLSSSQRPEEATETLRK 353

Query: 286 IQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL 345
           ++ G IKVLFVSPER LN +FLS+F  +  +SLVVVDEAHCVSEWSHNFRPSYMRL+AS+
Sbjct: 354 LKEGIIKVLFVSPERLLNVEFLSMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASM 413

Query: 346 LRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNE 405
           L + L  ECILAMTATATT TL+ VMS+LEIP +NLIQK+QLRDN +LSVSLSG NR  +
Sbjct: 414 LFSELKAECILAMTATATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKD 473

Query: 406 RSAYVDEV-FSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRI 464
               ++   +   RS   Y   Q     +ETD+IS+YL DN+I+ K YHSG+PAKDR RI
Sbjct: 474 LLILMESPPYKEIRSIIVYCKFQ-----YETDMISKYLRDNNINAKGYHSGLPAKDRVRI 528

Query: 465 QELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
           QE FCSNKIRVVVATVAFGMGLDK DVGAVIH+S+P S+EEYVQEIGRAGRDGRLSYCHL
Sbjct: 529 QESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHL 588

Query: 525 FLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEV 584
           F D+ TY +LRSL +SDGVDEYA+ KFL  VF+     H K+CSLV ESAS+KFD+KEEV
Sbjct: 589 FYDNDTYLKLRSLAHSDGVDEYAVGKFLTHVFSTETKQHEKICSLVIESASQKFDMKEEV 648

Query: 585 MLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYV 644
           M T+LT LELGE+QYL++LP+L + CTLNFHK++P  LA +  +VA ILKKS  KQG +V
Sbjct: 649 MQTILTHLELGEVQYLRMLPQLNICCTLNFHKSSPNTLAARSAIVAAILKKSHVKQGLHV 708

Query: 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKW 704
           FDIP VA+SI   T DV  ++  LKM+GE+TYELKD A+CYTI++ P + C+LS+HLTKW
Sbjct: 709 FDIPAVASSICVATTDVLAEIQALKMKGEVTYELKDSAFCYTILKSPKEICSLSSHLTKW 768

Query: 705 LSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNK 764
           L+E+E+CKVRKLD M  AAV A+ V   +   +G+  T  LQ  I DYF GD+ CD P+K
Sbjct: 769 LTEIESCKVRKLDIMSSAAVAAISVSNTSELSSGAKQTRSLQSRIFDYFNGDEKCDSPSK 828

Query: 765 IGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
             Q+  FLRADIKVFLQSN  AKFTPRA+ARI+HG+ SPA+P+++WSKTHF
Sbjct: 829 ATQNCAFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSVWSKTHF 879
3'-5' DNA helicase that may play a role in the repair of DNA.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2 Back     alignment and function description
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1 Back     alignment and function description
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis (strain 168) GN=recQ PE=3 SV=1 Back     alignment and function description
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309 PE=1 SV=1 Back     alignment and function description
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1 Back     alignment and function description
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12) GN=recQ PE=1 SV=5 Back     alignment and function description
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) GN=recQ PE=3 SV=1 Back     alignment and function description
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3 Back     alignment and function description
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana GN=RECQL3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query815
225425865 941 PREDICTED: ATP-dependent DNA helicase Q- 0.939 0.814 0.667 0.0
224110762901 predicted protein [Populus trichocarpa] 0.923 0.835 0.660 0.0
297738361688 unnamed protein product [Vitis vinifera] 0.782 0.927 0.745 0.0
449435462 952 PREDICTED: ATP-dependent DNA helicase Q- 0.970 0.830 0.583 0.0
255547870852 rothmund-thomson syndrome DNA helicase r 0.921 0.881 0.588 0.0
110741565911 putative ATP-dependent DNA helicase RecQ 0.985 0.881 0.564 0.0
30690118911 ATP-dependent DNA helicase Q-like 5 [Ara 0.985 0.881 0.563 0.0
297845738900 helicase [Arabidopsis lyrata subsp. lyra 0.860 0.778 0.618 0.0
17426897870 helicase [Arabidopsis thaliana] 0.906 0.849 0.596 0.0
12320889 941 ATP-dependent DNA helicase RecQ, putativ 0.982 0.851 0.543 0.0
>gi|225425865|ref|XP_002266225.1| PREDICTED: ATP-dependent DNA helicase Q-like 5-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1058 bits (2737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/813 (66%), Positives = 616/813 (75%), Gaps = 47/813 (5%)

Query: 44  RSFSQNPSISAFKSLETLPAGFCFRLASFTKIQKPSLR---FENDQSLP---TPSNPQGI 97
           R   QN  I A  S ETLPAG+  ++ASF+K+QKP  +    EN+ SL    TP  P   
Sbjct: 106 RFSGQNHPIYAVNSFETLPAGYFSKVASFSKLQKPCPKPDPVENEPSLASGLTPKQPHAC 165

Query: 98  NEIKSDAFAK-KKKQINLVSVDVPLPPAKLRKCNGEGNFVRLNLNNNKRKFANKGKRNKS 156
             + + +  K  KK  NL+  DV   P K  KC  EGNFVRLN+N   RKF NKGKR KS
Sbjct: 166 EAVSTGSAVKFVKKHCNLIGSDVNPKPVKRPKCGSEGNFVRLNINGYGRKFTNKGKR-KS 224

Query: 157 FRGKLSYR----------------------------------RTASELELVEEAVRAVRD 182
           +      R                                  R   + EL+E A   V++
Sbjct: 225 YNASSGARRTFRRTKRKSKAEGGAEEDEDGLVLETPTMEKQGRVKFDGELIEAAALEVQN 284

Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
           EASDE L +LL L +GYDSFRDGQLEAI+MVL+ KSTMLVLPTGAGKSLCYQ+PA++LPG
Sbjct: 285 EASDEKLVKLLGLTHGYDSFRDGQLEAIRMVLEGKSTMLVLPTGAGKSLCYQLPALVLPG 344

Query: 243 LTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
           +TLVV PLVALMIDQL+ LPP+I GG LSSSQ  EE +ET+R ++ G IKVLFVSPERFL
Sbjct: 345 ITLVVSPLVALMIDQLKQLPPMIPGGLLSSSQSAEETSETLRQLREGTIKVLFVSPERFL 404

Query: 303 NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
           NA+FLSI +A   ISLVVVDEAHCVSEWSHNFRPSYMRLRASLL A LN +CILAMTATA
Sbjct: 405 NAEFLSIVSAGPPISLVVVDEAHCVSEWSHNFRPSYMRLRASLLHAVLNAKCILAMTATA 464

Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
           T+ TL  VM ALEIP +NLIQKAQLRDNLQLSVSLS N  ++         F   +S   
Sbjct: 465 TSRTLHAVMHALEIPAANLIQKAQLRDNLQLSVSLSKNRMKDLMMLIKSPPFIEVQSIII 524

Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
           Y   Q      ETD IS+YLCDN+IS KSYHSGIPAKDRSR QELFCSNKIRVVVATVAF
Sbjct: 525 YCKFQ-----SETDSISKYLCDNNISAKSYHSGIPAKDRSRTQELFCSNKIRVVVATVAF 579

Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
           GMGL+K DVGAVIH+SLPESLEEYVQEIGRAGRDG LSYCHL  DDITYF+LRSLM+SDG
Sbjct: 580 GMGLNKSDVGAVIHFSLPESLEEYVQEIGRAGRDGNLSYCHLLFDDITYFKLRSLMHSDG 639

Query: 543 VDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQL 602
           VDEYA+N+FL QVF+NGM S GK+ S+VKE+ASRKFD+KEEVMLT+LT LELGE+QYL L
Sbjct: 640 VDEYAVNRFLSQVFSNGMGSPGKVHSIVKEAASRKFDMKEEVMLTILTHLELGEVQYLSL 699

Query: 603 LPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
           LP L VTC+LNFHKTTP LLAD D +VA ILKKSETKQG YVFDIPTVANSIG TTID+ 
Sbjct: 700 LPPLNVTCSLNFHKTTPALLADWDIVVAAILKKSETKQGHYVFDIPTVANSIGITTIDIL 759

Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
           NQL NLK++GEITYE+KDPAYCYTIV+VP D C L+AHLTKWLSEVE+CKV+KLD MF+A
Sbjct: 760 NQLQNLKLKGEITYEMKDPAYCYTIVDVPGDLCCLAAHLTKWLSEVESCKVQKLDTMFNA 819

Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQS 782
           AV AV++CEK  GC G+ HTPCLQ+ I DYF GD N D+PNK+ QSSPFLRADIKVFLQS
Sbjct: 820 AVSAVELCEKKCGCLGAQHTPCLQRKISDYFSGDGNGDIPNKMDQSSPFLRADIKVFLQS 879

Query: 783 NLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
           N   KFTPRAVARI+HGIASPAYPS  WS+THF
Sbjct: 880 NSQVKFTPRAVARIMHGIASPAYPSATWSRTHF 912

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224110762|ref|XP_002315627.1| predicted protein [Populus trichocarpa] gi|222864667|gb|EEF01798.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297738361|emb|CBI27562.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435462|ref|XP_004135514.1| PREDICTED: ATP-dependent DNA helicase Q-like 5-like [Cucumis sativus] gi|449495007|ref|XP_004159708.1| PREDICTED: ATP-dependent DNA helicase Q-like 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255547870|ref|XP_002514992.1| rothmund-thomson syndrome DNA helicase recq4, putative [Ricinus communis] gi|223546043|gb|EEF47546.1| rothmund-thomson syndrome DNA helicase recq4, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|110741565|dbj|BAE98731.1| putative ATP-dependent DNA helicase RecQ [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30690118|ref|NP_174109.2| ATP-dependent DNA helicase Q-like 5 [Arabidopsis thaliana] gi|298289257|sp|Q0WVW7.2|RQL5_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 5; AltName: Full=RecQ-like protein 5; Short=AtRecQ5; Short=AtRecQl5 gi|332192766|gb|AEE30887.1| ATP-dependent DNA helicase Q-like 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297845738|ref|XP_002890750.1| helicase [Arabidopsis lyrata subsp. lyrata] gi|297336592|gb|EFH67009.1| helicase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|17426897|emb|CAD13472.1| helicase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|12320889|gb|AAG50580.1|AC079280_11 ATP-dependent DNA helicase RecQ, putative [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query815
TAIR|locus:2029799911 AT1G27880 [Arabidopsis thalian 0.766 0.686 0.648 9.4e-233
UNIPROTKB|A5D7861218 RECQL4 "RECQL4 protein" [Bos t 0.435 0.291 0.357 4.9e-69
UNIPROTKB|O947611208 RECQL4 "ATP-dependent DNA heli 0.431 0.291 0.356 6.7e-68
UNIPROTKB|F1RSP71204 RECQL4 "Uncharacterized protei 0.436 0.295 0.345 9.7e-67
UNIPROTKB|K7GSZ91209 RECQL4 "Uncharacterized protei 0.436 0.294 0.345 1e-66
UNIPROTKB|F1RV441227 RECQL4 "Uncharacterized protei 0.436 0.290 0.345 1.2e-66
UNIPROTKB|Q47WD5690 CPS_4237 "RecQ domain protein" 0.478 0.565 0.377 5.4e-61
TIGR_CMR|CPS_4237690 CPS_4237 "RecQ domain protein" 0.478 0.565 0.377 5.4e-61
UNIPROTKB|Q33DM4 1503 recql4 "RecQ4 protein" [Xenopu 0.251 0.136 0.354 2.1e-59
UNIPROTKB|Q8EEK1654 SO_2380 "ATP-dependent DNA hel 0.488 0.608 0.356 1.4e-58
TAIR|locus:2029799 AT1G27880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2091 (741.1 bits), Expect = 9.4e-233, Sum P(3) = 9.4e-233
 Identities = 409/631 (64%), Positives = 488/631 (77%)

Query:   186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
             DENL +LL LVYGYDSFRDGQL+AIKM+L   STMLVLPTGAGKSLCYQIPAMILPG+TL
Sbjct:   254 DENLTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITL 313

Query:   246 VVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
             VV PLV+LMIDQL+HLP +I GG LSSSQRPEE  ET+R ++ G IKVLFVSPER LN +
Sbjct:   314 VVSPLVSLMIDQLKHLPSIIKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPERLLNVE 373

Query:   306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXX 365
             FLS+F  +  +SLVVVDEAHCVSEWSHNFRPSYM             ECILAM       
Sbjct:   374 FLSMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTM 433

Query:   366 XLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV-FSFHRSSKHYY 424
              L+ VMS+LEIP +NLIQK+QLRDN +LSVSLSG NR  +    ++   +   RS   Y 
Sbjct:   434 TLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIRSIIVYC 493

Query:   425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
               Q     +ETD+IS+YL DN+I+ K YHSG+PAKDR RIQE FCSNKIRVVVATVAFGM
Sbjct:   494 KFQ-----YETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGM 548

Query:   485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD 544
             GLDK DVGAVIH+S+P S+EEYVQEIGRAGRDGRLSYCHLF D+ TY +LRSL +SDGVD
Sbjct:   549 GLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKLRSLAHSDGVD 608

Query:   545 EYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLP 604
             EYA+ KFL  VF+     H K+CSLV ESAS+KFD+KEEVM T+LT LELGE+QYL++LP
Sbjct:   609 EYAVGKFLTHVFSTETKQHEKICSLVIESASQKFDMKEEVMQTILTHLELGEVQYLRMLP 668

Query:   605 ELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
             +L + CTLNFHK++P  LA +  +VA ILKKS  KQG +VFDIP VA+SI   T DV  +
Sbjct:   669 QLNICCTLNFHKSSPNTLAARSAIVAAILKKSHVKQGLHVFDIPAVASSICVATTDVLAE 728

Query:   665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
             +  LKM+GE+TYELKD A+CYTI++ P + C+LS+HLTKWL+E+E+CKVRKLD M  AAV
Sbjct:   729 IQALKMKGEVTYELKDSAFCYTILKSPKEICSLSSHLTKWLTEIESCKVRKLDIMSSAAV 788

Query:   725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNL 784
              A+ V   +   +G+  T  LQ  I DYF GD+ CD P+K  Q+  FLRADIKVFLQSN 
Sbjct:   789 AAISVSNTSELSSGAKQTRSLQSRIFDYFNGDEKCDSPSKATQNCAFLRADIKVFLQSNR 848

Query:   785 NAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
              AKFTPRA+ARI+HG+ SPA+P+++WSKTHF
Sbjct:   849 QAKFTPRAIARIMHGVGSPAFPNSVWSKTHF 879
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006310 "DNA recombination" evidence=IEA
GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS
GO:0042631 "cellular response to water deprivation" evidence=IEP
GO:0006260 "DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
UNIPROTKB|A5D786 RECQL4 "RECQL4 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O94761 RECQL4 "ATP-dependent DNA helicase Q4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RSP7 RECQL4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GSZ9 RECQL4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RV44 RECQL4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q47WD5 CPS_4237 "RecQ domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4237 CPS_4237 "RecQ domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q33DM4 recql4 "RecQ4 protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EEK1 SO_2380 "ATP-dependent DNA helicase RecQ family" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WVW7RQL5_ARATH3, ., 6, ., 4, ., 1, 20.56340.98520.8814yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.120.946
3rd Layer3.6.40.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query815
COG0514590 COG0514, RecQ, Superfamily II DNA helicase [DNA re 1e-104
TIGR01389591 TIGR01389, recQ, ATP-dependent DNA helicase RecQ 2e-91
TIGR00614470 TIGR00614, recQ_fam, ATP-dependent DNA helicase, R 3e-86
PRK11057607 PRK11057, PRK11057, ATP-dependent DNA helicase Rec 2e-80
PLN03137 1195 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4 2e-55
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 9e-26
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 5e-24
smart0049082 smart00490, HELICc, helicase superfamily c-termina 2e-23
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 2e-22
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 7e-22
COG1205 851 COG1205, COG1205, Distinct helicase family with a 4e-19
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 4e-16
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 4e-13
PTZ00424401 PTZ00424, PTZ00424, helicase 45; Provisional 6e-10
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 3e-09
PLN00206518 PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel 3e-08
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 7e-08
PRK01297475 PRK01297, PRK01297, ATP-dependent RNA helicase Rhl 8e-08
PRK04837423 PRK04837, PRK04837, ATP-dependent RNA helicase Rhl 4e-07
PRK10590456 PRK10590, PRK10590, ATP-dependent RNA helicase Rhl 5e-06
pfam04851100 pfam04851, ResIII, Type III restriction enzyme, re 6e-06
PTZ00110545 PTZ00110, PTZ00110, helicase; Provisional 1e-05
PRK11776460 PRK11776, PRK11776, ATP-dependent RNA helicase Dbp 2e-05
COG1201 814 COG1201, Lhr, Lhr-like helicases [General function 3e-05
PRK09751 1490 PRK09751, PRK09751, putative ATP-dependent helicas 5e-05
COG1201 814 COG1201, Lhr, Lhr-like helicases [General function 8e-05
TIGR03817742 TIGR03817, DECH_helic, helicase/secretion neighbor 9e-05
PRK11192434 PRK11192, PRK11192, ATP-dependent RNA helicase Srm 2e-04
TIGR04121 803 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA 2e-04
PRK11634629 PRK11634, PRK11634, ATP-dependent RNA helicase Dea 4e-04
PRK01172674 PRK01172, PRK01172, ski2-like helicase; Provisiona 0.002
PRK04537572 PRK04537, PRK04537, ATP-dependent RNA helicase Rhl 0.003
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  331 bits (852), Expect = e-104
 Identities = 148/370 (40%), Positives = 212/370 (57%), Gaps = 19/370 (5%)

Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
            E   ++L+ V+GY SFR GQ E I  +L  K T++V+PTG GKSLCYQIPA++L GLTL
Sbjct: 2   REEAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTL 61

Query: 246 VVCPLVALMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
           VV PL++LM DQ+  L     G    +L+S+   EE  + +  ++ G +K+L++SPER +
Sbjct: 62  VVSPLISLMKDQVDQL--EAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLM 119

Query: 303 NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
           +  FL        ISLV +DEAHC+S+W H+FRP Y   R   LRA L    +LA+TATA
Sbjct: 120 SPRFLE-LLKRLPISLVAIDEAHCISQWGHDFRPDY--RRLGRLRAGLPNPPVLALTATA 176

Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
           T     D+   L +  +N+ + +  R NL L V   G      + A++  V      S  
Sbjct: 177 TPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSD--QLAFLATVLPQLSKSGI 234

Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
            Y L  + K  + + ++ +L  N IS  +YH+G+  ++R R+Q+ F +++I+V+VAT AF
Sbjct: 235 IYCL--TRK--KVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAF 290

Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DIT---YFRLRSL 537
           GMG+DK DV  VIHY LP S+E Y QE GRAGRDG  +   L     DI    Y   +S 
Sbjct: 291 GMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSK 350

Query: 538 MYSDGVDEYA 547
              +      
Sbjct: 351 PDEEQKQIEL 360

Length = 590
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ Back     alignment and domain information
>gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit Back     alignment and domain information
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional Back     alignment and domain information
>gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] Back     alignment and domain information
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] Back     alignment and domain information
>gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated Back     alignment and domain information
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 815
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 100.0
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 100.0
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 100.0
KOG0353695 consensus ATP-dependent DNA helicase [General func 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
PTZ00110545 helicase; Provisional 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 100.0
PTZ00424401 helicase 45; Provisional 100.0
KOG0343758 consensus RNA Helicase [RNA processing and modific 100.0
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 100.0
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 100.0
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0347731 consensus RNA helicase [RNA processing and modific 100.0
KOG0346569 consensus RNA helicase [RNA processing and modific 100.0
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0334997 consensus RNA helicase [RNA processing and modific 100.0
KOG0327397 consensus Translation initiation factor 4F, helica 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
PRK13767 876 ATP-dependent helicase; Provisional 100.0
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 100.0
KOG4284 980 consensus DEAD box protein [Transcription] 100.0
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 100.0
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
PRK14701 1638 reverse gyrase; Provisional 100.0
PRK106891147 transcription-repair coupling factor; Provisional 100.0
TIGR00643630 recG ATP-dependent DNA helicase RecG. 100.0
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 100.0
COG1201 814 Lhr Lhr-like helicases [General function predictio 100.0
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 100.0
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 100.0
PRK09401 1176 reverse gyrase; Reviewed 100.0
PHA02653675 RNA helicase NPH-II; Provisional 100.0
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 100.0
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 100.0
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 100.0
COG1202830 Superfamily II helicase, archaea-specific [General 100.0
PHA02558501 uvsW UvsW helicase; Provisional 100.0
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 100.0
COG1200677 RecG RecG-like helicase [DNA replication, recombin 100.0
PRK05580679 primosome assembly protein PriA; Validated 100.0
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK09200790 preprotein translocase subunit SecA; Reviewed 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 100.0
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 100.0
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 100.0
COG1205 851 Distinct helicase family with a unique C-terminal 100.0
PRK13766773 Hef nuclease; Provisional 99.98
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.98
COG1204766 Superfamily II helicase [General function predicti 99.97
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.97
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.97
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.97
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.97
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.97
KOG0354746 consensus DEAD-box like helicase [General function 99.97
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.97
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.96
PRK04914956 ATP-dependent helicase HepA; Validated 99.95
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.95
PRK09694878 helicase Cas3; Provisional 99.95
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.94
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.94
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.93
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.93
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.92
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.92
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 99.92
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 99.92
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.91
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 99.91
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.91
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 99.91
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 99.9
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.9
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.89
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 99.89
KOG0950 1008 consensus DNA polymerase theta/eta, DEAD-box super 99.88
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.88
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 99.88
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 99.87
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.86
PRK05298652 excinuclease ABC subunit B; Provisional 99.86
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.85
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 99.83
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.83
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.83
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.81
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.79
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.77
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.77
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 99.76
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 99.75
PRK14873665 primosome assembly protein PriA; Provisional 99.75
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.74
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.73
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 99.72
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 99.72
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.69
COG4096875 HsdR Type I site-specific restriction-modification 99.68
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.68
smart00487201 DEXDc DEAD-like helicases superfamily. 99.67
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 99.67
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.66
CHL00122 870 secA preprotein translocase subunit SecA; Validate 99.6
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 99.59
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.57
KOG0387923 consensus Transcription-coupled repair protein CSB 99.57
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 99.56
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.55
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 99.54
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.53
smart0049082 HELICc helicase superfamily c-terminal domain. 99.53
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 99.53
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 99.52
COG4889 1518 Predicted helicase [General function prediction on 99.5
KOG1123776 consensus RNA polymerase II transcription initiati 99.49
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 99.46
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 99.45
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 99.42
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.39
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 99.39
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 99.32
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 99.31
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 99.3
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 99.28
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.24
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 99.13
KOG1002791 consensus Nucleotide excision repair protein RAD16 99.06
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 99.01
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 98.98
KOG4439901 consensus RNA polymerase II transcription terminat 98.97
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 98.93
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 98.88
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 98.87
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 98.87
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.83
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.83
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 98.79
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 98.75
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 98.74
COG0610962 Type I site-specific restriction-modification syst 98.66
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 98.58
KOG2340698 consensus Uncharacterized conserved protein [Funct 98.52
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 98.5
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 98.49
KOG0352 641 consensus ATP-dependent DNA helicase [Replication, 98.32
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 98.18
PRK15483 986 type III restriction-modification system StyLTI en 98.15
KOG0353 695 consensus ATP-dependent DNA helicase [General func 98.14
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 97.89
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 97.86
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 97.69
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 97.59
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 97.54
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.4
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 97.34
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 97.3
PRK10875615 recD exonuclease V subunit alpha; Provisional 97.25
PRK10536262 hypothetical protein; Provisional 97.19
KOG1803649 consensus DNA helicase [Replication, recombination 97.18
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 97.18
TIGR00376637 DNA helicase, putative. The gene product may repre 97.15
PF1324576 AAA_19: Part of AAA domain 97.15
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 97.11
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 97.08
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.01
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 96.93
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 96.89
PRK06526254 transposase; Provisional 96.88
PRK08181269 transposase; Validated 96.77
COG3587 985 Restriction endonuclease [Defense mechanisms] 96.71
KOG18051100 consensus DNA replication helicase [Replication, r 96.58
smart00492141 HELICc3 helicase superfamily c-terminal domain. 96.57
smart00491142 HELICc2 helicase superfamily c-terminal domain. 96.39
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 96.37
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 96.31
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 96.19
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 96.18
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 96.17
PRK12377248 putative replication protein; Provisional 96.14
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 96.12
PRK13889988 conjugal transfer relaxase TraA; Provisional 96.05
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 96.05
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 96.03
PRK07952244 DNA replication protein DnaC; Validated 95.97
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 95.96
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 95.92
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 95.89
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 95.87
PRK06921266 hypothetical protein; Provisional 95.82
PRK05642234 DNA replication initiation factor; Validated 95.78
PRK14974336 cell division protein FtsY; Provisional 95.76
KOG1131 755 consensus RNA polymerase II transcription initiati 95.75
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 95.74
PRK08727233 hypothetical protein; Validated 95.73
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 95.71
PRK08084235 DNA replication initiation factor; Provisional 95.68
COG3421 812 Uncharacterized protein conserved in bacteria [Fun 95.66
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 95.64
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 95.6
PRK04296190 thymidine kinase; Provisional 95.59
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 95.52
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 95.48
smart00382148 AAA ATPases associated with a variety of cellular 95.44
COG1484254 DnaC DNA replication protein [DNA replication, rec 95.35
PRK06835329 DNA replication protein DnaC; Validated 95.3
TIGR02688449 conserved hypothetical protein TIGR02688. Members 95.17
PRK06893229 DNA replication initiation factor; Validated 95.17
PRK13826 1102 Dtr system oriT relaxase; Provisional 95.13
PRK08116268 hypothetical protein; Validated 95.07
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 95.02
PF13871278 Helicase_C_4: Helicase_C-like 94.96
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 94.9
PTZ001121164 origin recognition complex 1 protein; Provisional 94.78
PRK00149450 dnaA chromosomal replication initiation protein; R 94.73
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 94.71
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 94.65
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 94.63
PF14617252 CMS1: U3-containing 90S pre-ribosomal complex subu 94.62
PF00004132 AAA: ATPase family associated with various cellula 94.5
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 94.45
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 94.35
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 94.07
COG2256436 MGS1 ATPase related to the helicase subunit of the 94.03
PRK03992389 proteasome-activating nucleotidase; Provisional 94.02
KOG1001674 consensus Helicase-like transcription factor HLTF/ 93.98
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 93.96
TIGR00362405 DnaA chromosomal replication initiator protein Dna 93.87
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 93.86
PRK10416318 signal recognition particle-docking protein FtsY; 93.86
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 93.85
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 93.82
PRK09183259 transposase/IS protein; Provisional 93.8
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 93.76
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 93.67
PRK14087450 dnaA chromosomal replication initiation protein; P 93.66
KOG0383696 consensus Predicted helicase [General function pre 93.64
PF13173128 AAA_14: AAA domain 93.62
PRK12422445 chromosomal replication initiation protein; Provis 93.59
COG1200677 RecG RecG-like helicase [DNA replication, recombin 93.49
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 93.43
TIGR00643630 recG ATP-dependent DNA helicase RecG. 93.41
TIGR00064272 ftsY signal recognition particle-docking protein F 93.36
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 93.21
PRK14088440 dnaA chromosomal replication initiation protein; P 93.2
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 93.18
cd01124187 KaiC KaiC is a circadian clock protein primarily f 93.15
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 93.11
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 93.02
PRK00771437 signal recognition particle protein Srp54; Provisi 92.98
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 92.9
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 92.89
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 92.88
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 92.87
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 92.86
PRK13342413 recombination factor protein RarA; Reviewed 92.78
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 92.77
PRK00411394 cdc6 cell division control protein 6; Reviewed 92.77
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 92.76
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 92.76
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 92.76
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 92.74
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 92.74
PRK14086617 dnaA chromosomal replication initiation protein; P 92.66
PHA02533534 17 large terminase protein; Provisional 92.5
PF12793115 SgrR_N: Sugar transport-related sRNA regulator N-t 92.5
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 92.42
CHL00181287 cbbX CbbX; Provisional 92.38
PRK05580679 primosome assembly protein PriA; Validated 92.34
PRK14712 1623 conjugal transfer nickase/helicase TraI; Provision 92.17
TIGR01075 715 uvrD DNA helicase II. Designed to identify uvrD me 92.12
PRK08939306 primosomal protein DnaI; Reviewed 92.04
TIGR00595505 priA primosomal protein N'. All proteins in this f 91.96
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 91.94
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 91.89
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 91.85
PRK08903227 DnaA regulatory inactivator Hda; Validated 91.83
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 91.74
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 91.74
PRK11773 721 uvrD DNA-dependent helicase II; Provisional 91.71
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 91.69
PRK04195482 replication factor C large subunit; Provisional 91.67
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 91.62
PRK11054684 helD DNA helicase IV; Provisional 91.62
TIGR01074664 rep ATP-dependent DNA helicase Rep. Designed to id 91.61
TIGR02928365 orc1/cdc6 family replication initiation protein. M 91.55
PRK13341725 recombination factor protein RarA/unknown domain f 91.51
cd03115173 SRP The signal recognition particle (SRP) mediates 91.5
PRK13709 1747 conjugal transfer nickase/helicase TraI; Provision 91.5
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 91.47
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 91.47
KOG0298 1394 consensus DEAD box-containing helicase-like transc 91.42
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 91.42
PRK106891147 transcription-repair coupling factor; Provisional 91.3
CHL00176638 ftsH cell division protein; Validated 91.26
PRK06266178 transcription initiation factor E subunit alpha; V 91.26
PF05872502 DUF853: Bacterial protein of unknown function (DUF 91.18
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 91.16
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 91.1
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 91.02
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 90.82
PRK13833323 conjugal transfer protein TrbB; Provisional 90.7
PHA03368738 DNA packaging terminase subunit 1; Provisional 90.68
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 90.63
PHA03333752 putative ATPase subunit of terminase; Provisional 90.55
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 90.52
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 90.46
PRK13894319 conjugal transfer ATPase TrbB; Provisional 90.43
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 90.35
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 90.25
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 90.24
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 90.22
COG0556663 UvrB Helicase subunit of the DNA excision repair c 90.19
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 90.17
PRK14873665 primosome assembly protein PriA; Provisional 90.06
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 89.91
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 89.76
PLN03025319 replication factor C subunit; Provisional 89.74
PRK12402337 replication factor C small subunit 2; Reviewed 89.73
KOG2028554 consensus ATPase related to the helicase subunit o 89.72
PRK06620214 hypothetical protein; Validated 89.7
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 89.53
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 89.46
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 89.37
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 89.37
TIGR01073 726 pcrA ATP-dependent DNA helicase PcrA. Designed to 89.33
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 89.32
PHA00729226 NTP-binding motif containing protein 89.31
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 89.12
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 88.99
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 88.93
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 88.9
cd03239178 ABC_SMC_head The structural maintenance of chromos 88.8
PTZ00110545 helicase; Provisional 88.75
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 88.73
PRK05707328 DNA polymerase III subunit delta'; Validated 88.53
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 88.45
cd01126384 TraG_VirD4 The TraG/TraD/VirD4 family are bacteria 88.4
COG2255332 RuvB Holliday junction resolvasome, helicase subun 88.29
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 88.26
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 88.26
COG0593408 DnaA ATPase involved in DNA replication initiation 88.25
PF02534469 T4SS-DNA_transf: Type IV secretory system Conjugat 88.07
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 88.04
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 88.01
PRK08769319 DNA polymerase III subunit delta'; Validated 87.95
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 87.94
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 87.94
TIGR02785 1232 addA_Gpos recombination helicase AddA, Firmicutes 87.83
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 87.77
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 87.5
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 87.32
PRK09376416 rho transcription termination factor Rho; Provisio 87.26
PRK06067234 flagellar accessory protein FlaH; Validated 87.25
PHA02544316 44 clamp loader, small subunit; Provisional 87.23
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 87.15
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 87.09
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 87.06
PRK10867433 signal recognition particle protein; Provisional 86.85
PRK11823446 DNA repair protein RadA; Provisional 86.74
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 86.71
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 86.25
PHA00350399 putative assembly protein 86.24
COG2345218 Predicted transcriptional regulator [Transcription 86.23
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 86.18
PRK11331459 5-methylcytosine-specific restriction enzyme subun 86.03
PF05707193 Zot: Zonular occludens toxin (Zot); InterPro: IPR0 85.86
PRK05416288 glmZ(sRNA)-inactivating NTPase; Provisional 85.77
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 85.73
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 85.6
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 85.52
cd00983325 recA RecA is a bacterial enzyme which has roles in 85.45
COG5008375 PilU Tfp pilus assembly protein, ATPase PilU [Cell 85.4
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 85.37
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 85.37
PRK13851344 type IV secretion system protein VirB11; Provision 85.36
KOG0701 1606 consensus dsRNA-specific nuclease Dicer and relate 85.31
TIGR00373158 conserved hypothetical protein TIGR00373. This fam 85.22
PF1373055 HTH_36: Helix-turn-helix domain 85.2
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 85.18
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 85.17
PRK10865857 protein disaggregation chaperone; Provisional 85.16
TIGR00959428 ffh signal recognition particle protein. This mode 85.09
PRK13897606 type IV secretion system component VirD4; Provisio 84.95
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 84.93
PRK05973237 replicative DNA helicase; Provisional 84.87
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 84.68
COG3973747 Superfamily I DNA and RNA helicases [General funct 84.67
PRK09112351 DNA polymerase III subunit delta'; Validated 84.61
TIGR00767415 rho transcription termination factor Rho. Members 84.59
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 84.57
KOG0734752 consensus AAA+-type ATPase containing the peptidas 84.48
TIGR02524358 dot_icm_DotB Dot/Icm secretion system ATPase DotB. 84.48
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 84.44
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 84.43
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 84.38
PRK10733644 hflB ATP-dependent metalloprotease; Reviewed 84.3
TIGR00763775 lon ATP-dependent protease La. This protein is ind 84.21
CHL00195489 ycf46 Ycf46; Provisional 84.19
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 84.17
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 84.14
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 84.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 83.95
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 83.93
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 83.9
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 83.84
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 83.82
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 83.53
KOG1133 821 consensus Helicase of the DEAD superfamily [Replic 83.53
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 83.49
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 83.35
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 83.28
PRK10436462 hypothetical protein; Provisional 83.27
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 83.12
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 83.11
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 82.97
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 82.93
PRK13850670 type IV secretion system protein VirD4; Provisiona 82.79
PF0039264 GntR: Bacterial regulatory proteins, gntR family; 82.65
PRK08533230 flagellar accessory protein FlaH; Reviewed 82.6
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 82.58
PF10593239 Z1: Z1 domain; InterPro: IPR018310 This entry repr 82.48
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 82.46
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 82.41
COG4098441 comFA Superfamily II DNA/RNA helicase required for 82.38
PRK10141117 DNA-binding transcriptional repressor ArsR; Provis 82.36
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 82.23
PRK14701 1638 reverse gyrase; Provisional 82.04
KOG18061320 consensus DEAD box containing helicases [Replicati 81.97
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 81.95
COG11971139 Mfd Transcription-repair coupling factor (superfam 81.88
PRK13876663 conjugal transfer coupling protein TraG; Provision 81.63
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 81.46
PRK08840464 replicative DNA helicase; Provisional 81.31
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 81.26
PF0132560 Fe_dep_repress: Iron dependent repressor, N-termin 81.24
COG0630312 VirB11 Type IV secretory pathway, VirB11 component 81.11
PF05729166 NACHT: NACHT domain 81.08
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 81.01
PRK06964342 DNA polymerase III subunit delta'; Validated 80.97
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 80.95
smart0041948 HTH_CRP helix_turn_helix, cAMP Regulatory protein. 80.93
TIGR02012321 tigrfam_recA protein RecA. This model describes or 80.86
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 80.84
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 80.77
CHL00095821 clpC Clp protease ATP binding subunit 80.65
PHA00012361 I assembly protein 80.58
PRK07940394 DNA polymerase III subunit delta'; Validated 80.4
PRK09354349 recA recombinase A; Provisional 80.33
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 80.31
KOG15131300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 80.15
PRK06904472 replicative DNA helicase; Validated 80.02
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-74  Score=644.24  Aligned_cols=340  Identities=41%  Similarity=0.659  Sum_probs=311.4

Q ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCC-Cce
Q 036378          188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPP-VIH  266 (815)
Q Consensus       188 ~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~-~~~  266 (815)
                      .+..+|+++|||..||+.|.++|..+++|+|+++++|||+|||+|||+|++...|.+|||+|+++||+||++.+.. ++.
T Consensus         4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~   83 (590)
T COG0514           4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIR   83 (590)
T ss_pred             HHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCce
Confidence            4557899999999999999999999999999999999999999999999999999999999999999999999998 889


Q ss_pred             eeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHH
Q 036378          267 GGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLL  346 (815)
Q Consensus       267 ~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~  346 (815)
                      +..+++.++..+....+..+..|.+++||.+||+|.+..+.+.+. -..+.++|||||||+|+|||+|||+|..+ .. +
T Consensus        84 A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~-~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l-g~-l  160 (590)
T COG0514          84 AAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLK-RLPISLVAIDEAHCISQWGHDFRPDYRRL-GR-L  160 (590)
T ss_pred             eehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHH-hCCCceEEechHHHHhhcCCccCHhHHHH-HH-H
Confidence            999999999999999999999999999999999999999988888 56899999999999999999999999999 44 5


Q ss_pred             HHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceE
Q 036378          347 RARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL  426 (815)
Q Consensus       347 ~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i  426 (815)
                      ....+.++++++|||+++.+..||.+.|.+....++..++.|+|+.+.+....+....     +..+.. .........+
T Consensus       161 ~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q-----~~fi~~-~~~~~~~~GI  234 (590)
T COG0514         161 RAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQ-----LAFLAT-VLPQLSKSGI  234 (590)
T ss_pred             HhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHH-----HHHHHh-hccccCCCeE
Confidence            5666788999999999999999999999999999999999999999998876522221     001111 1133456689


Q ss_pred             EEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHH
Q 036378          427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEY  506 (815)
Q Consensus       427 vf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y  506 (815)
                      |||.||+.++.+++.|...|+.+..|||||+.++|..++++|..++++|||||.|||||||+||||+|||||+|.|+|+|
T Consensus       235 IYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsY  314 (590)
T COG0514         235 IYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESY  314 (590)
T ss_pred             EEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcccCCCCCCceEEEEeccccHHHHHH
Q 036378          507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRS  536 (815)
Q Consensus       507 ~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~  536 (815)
                      +|++|||||||.++.|++||++.|....+.
T Consensus       315 yQE~GRAGRDG~~a~aill~~~~D~~~~~~  344 (590)
T COG0514         315 YQETGRAGRDGLPAEAILLYSPEDIRWQRY  344 (590)
T ss_pred             HHHHhhccCCCCcceEEEeeccccHHHHHH
Confidence            999999999999999999999988765543

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK06266 transcription initiation factor E subunit alpha; Validated Back     alignment and domain information
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PHA00350 putative assembly protein Back     alignment and domain information
>COG2345 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) Back     alignment and domain information
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] Back     alignment and domain information
>TIGR00373 conserved hypothetical protein TIGR00373 Back     alignment and domain information
>PF13730 HTH_36: Helix-turn-helix domain Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>PRK13897 type IV secretion system component VirD4; Provisional Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13850 type IV secretion system protein VirD4; Provisional Back     alignment and domain information
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair] Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK13876 conjugal transfer coupling protein TraG; Provisional Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>PRK08840 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family Back     alignment and domain information
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PHA00012 I assembly protein Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query815
1oyy_A523 Structure Of The Recq Catalytic Core Bound To Atp-G 5e-50
1oyw_A523 Structure Of The Recq Catalytic Core Length = 523 5e-47
2v1x_A591 Crystal Structure Of Human Recq-Like Dna Helicase L 5e-44
2j0u_B374 The Crystal Structure Of Eif4aiii-Barentsz Complex 4e-12
2j0u_A374 The Crystal Structure Of Eif4aiii-Barentsz Complex 5e-12
2j0q_A410 The Crystal Structure Of The Exon Junction Complex 5e-12
2xb2_A411 Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar 5e-12
2hyi_C413 Structure Of The Human Exon Junction Complex With A 5e-12
2hxy_A391 Crystal Structure Of Human Apo-Eif4aiii Length = 39 5e-12
1hv8_A367 Crystal Structure Of A Dead Box Protein From The Hy 2e-09
2p6n_A191 Human Dead-box Rna Helicase Ddx41, Helicase Domain 1e-08
2jgn_A185 Ddx3 Helicase Domain Length = 185 4e-08
2i4i_A417 Crystal Structure Of Human Dead-Box Rna Helicase Dd 4e-08
2z0m_A337 Crystal Structure Of Hypothetical Atp-Dependent Rna 3e-07
1xtk_A390 Structure Of Decd To Dead Mutation Of Human Uap56 L 6e-07
1xti_A391 Structure Of Wildtype Human Uap56 Length = 391 6e-07
1xtj_A386 Structure Of Human Uap56 In Complex With Adp Length 7e-07
1t5i_A172 Crystal Structure Of The C-Terminal Domain Of Uap56 9e-07
2db3_A434 Structural Basis For Rna Unwinding By The Dead-Box 1e-06
1s2m_A400 Crystal Structure Of The Dead Box Protein Dhh1p Len 2e-06
2hjv_A163 Structure Of The Second Domain (Residues 207-368) O 3e-05
2wax_A193 Structure Of The Human Ddx6 C-Terminal Domain In Co 4e-05
3i32_A300 Dimeric Structure Of A Hera Helicase Fragment Inclu 3e-04
3eaq_A212 Novel Dimerization Motif In The Dead Box Rna Helica 6e-04
3pey_A395 S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length 7e-04
3pew_A395 S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 7e-04
2vso_A395 Crystal Structure Of A Translation Initiation Compl 8e-04
1fuu_A394 Yeast Initiation Factor 4a Length = 394 8e-04
1fuk_A165 Crystal Structure Of The Carboxy Terminal Domain Of 9e-04
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 Back     alignment and structure 
Iteration: 1

 Score =  196 bits (498), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 190/347 (54%), Gaps = 16/347 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
           ++L+  +GY  FR GQ E I  VL  +  ++V+PTG GKSLCYQIPA++L GLT+VV PL
Sbjct: 15  QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
           ++LM DQ+  L    +    L+S+Q  E+  E +   + G I++L+++PER +  +FL  
Sbjct: 75  ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEH 134
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
               + + L+ VDEAHC+S+W H+FRP Y                 +A+         +D
Sbjct: 135 LAHWNPV-LLAVDEAHCISQWGHDFRPEY--AALGQLRQRFPTLPFMALTATADDTTRQD 191
Query: 370 VMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
           ++  L +    LIQ +   R N++  +         E+   +D++  + +  +    +  
Sbjct: 192 IVRLLGLN-DPLIQISSFDRPNIRYMLM--------EKFKPLDQLMRYVQEQRGKSGIIY 242
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
                + +  +  L    IS  +YH+G+    R+ +QE F  + +++VVATVAFGMG++K
Sbjct: 243 CNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 302
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
            +V  V+H+ +P ++E Y QE GRAGRDG  +   LF D  D+ + R
Sbjct: 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 Back     alignment and structure
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase Length = 591 Back     alignment and structure
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 Back     alignment and structure
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 Back     alignment and structure
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 Back     alignment and structure
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 Back     alignment and structure
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 Back     alignment and structure
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 Back     alignment and structure
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 Back     alignment and structure
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 Back     alignment and structure
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 Back     alignment and structure
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 Back     alignment and structure
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 Back     alignment and structure
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 Back     alignment and structure
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 Back     alignment and structure
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 Back     alignment and structure
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 Back     alignment and structure
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 Back     alignment and structure
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 Back     alignment and structure
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 Back     alignment and structure
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 Back     alignment and structure
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 Back     alignment and structure
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 Back     alignment and structure
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 Back     alignment and structure
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 Back     alignment and structure
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query815
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 1e-116
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 1e-112
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 2e-15
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 1e-14
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 5e-14
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 4e-13
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 5e-13
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 6e-13
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 8e-13
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 8e-13
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 3e-12
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 3e-12
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 4e-12
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 6e-12
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 7e-12
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 8e-12
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 1e-11
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 1e-11
3b6e_A216 Interferon-induced helicase C domain-containing P; 2e-11
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 2e-11
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 8e-11
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 2e-10
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 4e-10
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 7e-10
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 1e-08
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 8e-10
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 5e-09
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 9e-04
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 8e-09
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 1e-08
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 1e-08
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 1e-08
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 2e-08
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 3e-08
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 4e-08
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 7e-08
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 1e-06
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 2e-06
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 3e-04
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 3e-06
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 4e-06
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 4e-06
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 2e-04
1yks_A440 Genome polyprotein [contains: flavivirin protease 5e-06
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 6e-06
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 2e-04
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Length = 523 Back     alignment and structure
 Score =  361 bits (930), Expect = e-116
 Identities = 127/371 (34%), Positives = 198/371 (53%), Gaps = 30/371 (8%)

Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
           +    ++L+  +GY  FR GQ E I  VL  +  ++V+PTG GKSLCYQIPA++L GLT+
Sbjct: 10  ESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTV 69

Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
           VV PL++LM DQ+  L    +    L+S+Q  E+  E +   + G I++L+++PER +  
Sbjct: 70  VVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD 129

Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
           +FL      +   L+ VDEAHC+S+W H+FRP Y  L    LR R      +A+TATA  
Sbjct: 130 NFLEHLAHWN-PVLLAVDEAHCISQWGHDFRPEYAAL--GQLRQRFPTLPFMALTATADD 186

Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
           TT +D++  L +    +   +  R N++  + +      ++   YV E     R      
Sbjct: 187 TTRQDIVRLLGLNDPLIQISSFDRPNIRYML-MEKFKPLDQLMRYVQE----QRGK---- 237

Query: 425 ILQISG-------KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
               SG          + +  +  L    IS  +YH+G+    R+ +QE F  + +++VV
Sbjct: 238 ----SGIIYCNSRA--KVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVV 291

Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLR 535
           ATVAFGMG++K +V  V+H+ +P ++E Y QE GRAGRDG  +   LF    D+    LR
Sbjct: 292 ATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM--AWLR 349

Query: 536 SLMYSDGVDEY 546
             +      + 
Sbjct: 350 RCLEEKPQGQL 360
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Length = 591 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query815
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 100.0
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 100.0
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 100.0
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 100.0
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 100.0
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 100.0
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 100.0
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 100.0
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 100.0
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 100.0
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 100.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 100.0
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 100.0
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 100.0
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 100.0
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 100.0
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 100.0
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 100.0
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 100.0
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 100.0
1yks_A440 Genome polyprotein [contains: flavivirin protease 100.0
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 100.0
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 100.0
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 100.0
3h1t_A590 Type I site-specific restriction-modification syst 100.0
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.98
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.97
3jux_A822 Protein translocase subunit SECA; protein transloc 99.96
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.96
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.96
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.96
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.95
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.95
3bor_A237 Human initiation factor 4A-II; translation initiat 99.95
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.95
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.95
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.95
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.95
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.94
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.94
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.94
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.94
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.94
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.94
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.94
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.94
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.94
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.94
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.91
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 99.91
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.9
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.9
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.9
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.89
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.89
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.88
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.87
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.86
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.77
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.8
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 99.8
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 99.72
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.72
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.69
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 99.65
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.63
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 98.49
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 97.8
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 97.75
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 97.63
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 97.61
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 97.57
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 97.53
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 97.16
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 96.64
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 96.43
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 96.27
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 96.23
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 96.17
2zpa_A671 Uncharacterized protein YPFI; RNA modification enz 95.92
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 95.83
3bos_A242 Putative DNA replication factor; P-loop containing 95.81
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 94.87
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 94.66
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 94.64
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 94.58
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 94.38
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 94.28
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 94.23
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 94.13
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 94.09
2kjq_A149 DNAA-related protein; solution structure, NESG, st 94.03
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 93.95
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 93.86
3co5_A143 Putative two-component system transcriptional RES 93.84
2xvc_A59 ESCRT-III, SSO0910; cell cycle, cell division, cyt 93.67
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 93.26
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 93.24
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 93.21
2qgz_A308 Helicase loader, putative primosome component; str 93.18
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 93.11
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 93.1
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 93.04
2v1u_A387 Cell division control protein 6 homolog; DNA repli 92.92
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 92.81
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 92.72
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 92.68
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 92.49
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 92.47
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 92.43
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 92.35
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 92.34
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 92.33
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 92.32
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 92.31
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 92.26
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 92.25
3pvs_A447 Replication-associated recombination protein A; ma 92.23
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 92.04
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 91.91
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 91.81
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 91.76
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 91.72
2chg_A226 Replication factor C small subunit; DNA-binding pr 91.63
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 91.59
3hjh_A483 Transcription-repair-coupling factor; MFD, mutatio 91.4
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 91.35
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 90.95
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 90.93
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 90.89
1uaa_A673 REP helicase, protein (ATP-dependent DNA helicase 90.87
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 90.78
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 90.77
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 90.76
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 90.76
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 90.74
1pjr_A724 PCRA; DNA repair, DNA replication, SOS response, h 90.46
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 90.38
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 90.29
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 90.27
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 89.97
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 89.57
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 89.55
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 89.48
2r6a_A454 DNAB helicase, replicative helicase; replication, 89.21
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 88.99
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 88.96
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 88.96
3u4q_A 1232 ATP-dependent helicase/nuclease subunit A; helicas 88.9
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 88.71
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 88.5
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 88.41
2cvh_A220 DNA repair and recombination protein RADB; filamen 87.94
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 87.9
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 87.69
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 87.68
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 87.66
1vma_A306 Cell division protein FTSY; TM0570, structural gen 87.62
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 87.59
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 87.1
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 86.86
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 86.59
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 86.58
2gno_A305 DNA polymerase III, gamma subunit-related protein; 86.36
1lva_A258 Selenocysteine-specific elongation factor; winged- 86.04
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 85.85
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 85.73
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 85.54
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 85.33
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 85.27
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 84.94
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 84.84
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 84.77
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 84.49
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 84.25
1oyi_A82 Double-stranded RNA-binding protein; (alpha+beta) 84.06
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 83.58
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 83.56
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 82.8
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 82.76
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 82.68
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 83.32
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 82.55
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 82.47
2p4r_T26 E3 ubiquitin-protein ligase itchy homolog; SH3 dom 82.35
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 82.27
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 82.26
2b0l_A102 GTP-sensing transcriptional pleiotropic repressor; 82.25
2oqg_A114 Possible transcriptional regulator, ARSR family P; 81.97
2v79_A135 DNA replication protein DNAD; primosome, DNA-bindi 81.84
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 81.72
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 81.43
2iut_A574 DNA translocase FTSK; nucleotide-binding, chromoso 81.4
2vn2_A128 DNAD, chromosome replication initiation protein; D 81.32
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 81.07
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 81.02
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 80.95
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 80.89
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 80.53
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 80.26
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 80.21
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-63  Score=576.86  Aligned_cols=348  Identities=36%  Similarity=0.598  Sum_probs=309.4

Q ss_pred             ccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEE
Q 036378          166 TASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL  245 (815)
Q Consensus       166 ~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~l  245 (815)
                      .|+++++++++.+.+.+.             |||..|||+|.++|+.+++|+|+++++|||+|||+||++|++...+.+|
T Consensus         3 ~fe~l~L~~~~~~~l~~~-------------~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~l   69 (523)
T 1oyw_A            3 QAEVLNLESGAKQVLQET-------------FGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTV   69 (523)
T ss_dssp             CCCCSSHHHHHHHHHHHT-------------TCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEE
T ss_pred             ChhhCCCCHHHHHHHHHH-------------hCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEE
Confidence            577788888777777664             8999999999999999999999999999999999999999999999999


Q ss_pred             EEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEecc
Q 036378          246 VVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEA  324 (815)
Q Consensus       246 Vl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEa  324 (815)
                      ||+|+++||.||++.+.+ ++....+++.....+....+..+..|.++|+|+|||+|....+...+. ..++++||||||
T Consensus        70 vi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~-~~~~~~vViDEa  148 (523)
T 1oyw_A           70 VVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLA-HWNPVLLAVDEA  148 (523)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHT-TSCEEEEEESSG
T ss_pred             EECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHh-hCCCCEEEEeCc
Confidence            999999999999999987 677788888888888888888888899999999999998776666665 578999999999


Q ss_pred             ccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccch
Q 036378          325 HCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN  404 (815)
Q Consensus       325 H~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~  404 (815)
                      ||+++|||+||+.|..+ .. +....+..+++++|||++..+..++.+.+++....++..++.++++.+.+......   
T Consensus       149 H~i~~~g~~fr~~~~~l-~~-l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~---  223 (523)
T 1oyw_A          149 HCISQWGHDFRPEYAAL-GQ-LRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKP---  223 (523)
T ss_dssp             GGGCTTSSCCCHHHHGG-GG-HHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSH---
T ss_pred             cccCcCCCccHHHHHHH-HH-HHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCH---
Confidence            99999999999999988 33 34455678899999999999999999999888777777888899998887654322   


Q ss_pred             hhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccccc
Q 036378          405 ERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM  484 (815)
Q Consensus       405 ~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~  484 (815)
                           ...+..++....+.+++|||++++.++.+++.|...|+.+..|||+|+.++|.+++++|++|+.+|||||++++|
T Consensus       224 -----~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~  298 (523)
T 1oyw_A          224 -----LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM  298 (523)
T ss_dssp             -----HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred             -----HHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence                 222334444456779999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378          485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL  537 (815)
Q Consensus       485 GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~  537 (815)
                      |||+|+|++||||++|.|+++|+||+|||||+|++|.|++|+++.|...++.+
T Consensus       299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~  351 (523)
T 1oyw_A          299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC  351 (523)
T ss_dssp             TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred             CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999887665544
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>2p4r_T E3 ubiquitin-protein ligase itchy homolog; SH3 domain peptide ligand complex; 2.00A {Rattus norvegicus} Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 Back     alignment and structure
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} Back     alignment and structure
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Back     alignment and structure
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 815
d1oywa2206 c.37.1.19 (A:1-206) RecQ helicase domain {Escheric 3e-27
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 7e-23
d1a1va2299 c.37.1.14 (A:326-624) HCV helicase domain {Human h 3e-16
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 4e-15
d1gkub2248 c.37.1.16 (B:251-498) Helicase-like "domain" of re 3e-13
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 3e-11
d1jr6a_138 c.37.1.14 (A:) HCV helicase domain {Human hepatiti 3e-10
d1t5la2181 c.37.1.19 (A:415-595) Nucleotide excision repair e 2e-09
d1fuka_162 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 1e-08
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 1e-08
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 3e-08
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 3e-08
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 9e-08
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 1e-07
d1wp9a1200 c.37.1.19 (A:1-200) putative ATP-dependent RNA hel 3e-07
d2j0sa2168 c.37.1.19 (A:244-411) Probable ATP-dependent RNA h 7e-07
d1gm5a4206 c.37.1.19 (A:550-755) RecG helicase domain {Thermo 1e-06
d2rb4a1168 c.37.1.19 (A:307-474) ATP-dependent RNA helicase D 7e-06
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 1e-05
d1tf5a4175 c.37.1.19 (A:396-570) Translocation ATPase SecA, n 3e-05
d2eyqa5211 c.37.1.19 (A:779-989) Transcription-repair couplin 7e-05
d1a1va1136 c.37.1.14 (A:190-325) HCV helicase domain {Human h 9e-04
d1s2ma2171 c.37.1.19 (A:252-422) Putative ATP-dependent RNA h 0.002
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

 Score =  107 bits (268), Expect = 3e-27
 Identities = 78/192 (40%), Positives = 117/192 (60%), Gaps = 4/192 (2%)

Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
           +    ++L+  +GY  FR GQ E I  VL  +  ++V+PTG GKSLCYQIPA++L GLT+
Sbjct: 10  ESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTV 69

Query: 246 VVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
           VV PL++LM DQ+  L    +    L+S+Q  E+  E +   + G I++L+++PER +  
Sbjct: 70  VVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD 129

Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
           +FL      +   L+ VDEAHC+S+W H+FRP Y  L    LR R      +A+TATA  
Sbjct: 130 NFLEHLAHWN-PVLLAVDEAHCISQWGHDFRPEYAALGQ--LRQRFPTLPFMALTATADD 186

Query: 365 TTLRDVMSALEI 376
           TT +D++  L +
Sbjct: 187 TTRQDIVRLLGL 198
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Length = 206 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Length = 211 Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query815
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 100.0
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.97
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.97
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.97
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.97
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.97
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.96
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.96
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.95
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.95
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.95
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.94
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.93
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.93
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.93
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.92
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.92
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.91
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.9
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.89
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.88
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.87
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.86
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.81
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.78
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.77
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.76
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.76
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.73
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.72
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.7
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.67
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.63
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.63
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.57
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.56
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.51
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.34
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.26
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.13
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 99.08
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.99
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.97
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 98.31
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 98.23
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 98.21
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.66
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 96.41
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 96.22
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 95.89
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 95.88
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 95.71
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 95.65
d1ls1a2207 GTPase domain of the signal sequence recognition p 95.6
d1okkd2207 GTPase domain of the signal recognition particle r 95.57
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 95.5
d2qy9a2211 GTPase domain of the signal recognition particle r 95.24
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 95.24
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 95.23
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 95.09
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 95.05
d1j8yf2211 GTPase domain of the signal sequence recognition p 94.67
d1vmaa2213 GTPase domain of the signal recognition particle r 94.66
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 94.53
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 93.75
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 93.17
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 92.97
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 92.78
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 92.67
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 92.57
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 92.16
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 92.07
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 92.06
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 91.99
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 91.53
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 91.25
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 91.17
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 90.43
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 90.4
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 90.34
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 90.14
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 89.93
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 89.73
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 89.55
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 88.63
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 88.37
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 86.88
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 86.24
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 86.21
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 85.95
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 85.29
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 84.85
d2ev0a161 Manganese transport regulator MntR {Bacillus subti 84.21
d2isya163 Iron-dependent regulator IdeR {Mycobacterium tuber 83.96
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 83.37
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 82.85
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 81.84
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 81.61
d1zyba173 Probable transcription regulator BT4300, C-termina 81.39
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 81.34
d2hs5a169 Putative transcriptional regulator RHA1_ro03477 {R 81.13
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 81.12
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 80.87
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=100.00  E-value=6.5e-33  Score=296.31  Aligned_cols=270  Identities=18%  Similarity=0.072  Sum_probs=187.7

Q ss_pred             HcCCCEEEEcCCChhHHHHHHHHHHH----cCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcC
Q 036378          214 LDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVG  289 (815)
Q Consensus       214 l~g~d~li~apTGsGKTl~~~lp~l~----~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g  289 (815)
                      .+|+++|+.||||||||++|+.+++.    .+.++||++||++|+.|+++.+........  ...        ......+
T Consensus         7 ~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~--~~~--------~~~~~~~   76 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQ--TPA--------IRAEHTG   76 (305)
T ss_dssp             STTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSCCBCC--C----------------C
T ss_pred             hcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEccHHHHHHHHHHHHhcCCccee--eeE--------EeecccC
Confidence            46899999999999999999777753    478999999999999999999987421111  000        1122235


Q ss_pred             CceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHH
Q 036378          290 AIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD  369 (815)
Q Consensus       290 ~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~  369 (815)
                      ...|+++||+.|....... .. +.++++|||||||++..|+..++.-+..+      ...+..+++++|||++..... 
T Consensus        77 ~~~i~~~t~~~l~~~~~~~-~~-~~~~~~vViDE~H~~~~~~~~~~~~l~~~------~~~~~~~~v~~SAT~~~~~~~-  147 (305)
T d2bmfa2          77 REIVDLMCHATFTMRLLSP-IR-VPNYNLIIMDEAHFTDPASIAARGYISTR------VEMGEAAGIFMTATPPGSRDP-  147 (305)
T ss_dssp             CCSEEEEEHHHHHHHHTSS-SC-CCCCSEEEEESTTCCSHHHHHHHHHHHHH------HHHTSCEEEEECSSCTTCCCS-
T ss_pred             ccccccCCcHHHHHHHhcC-cc-ccceeEEEeeeeeecchhhHHHHHHHHHh------hccccceEEEeecCCCcceee-
Confidence            6789999999886653322 22 67899999999999998876555432222      123456899999998653210 


Q ss_pred             HHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcE
Q 036378          370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISV  449 (815)
Q Consensus       370 i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v  449 (815)
                            .        ......+..............   .     ...-.....++++||+++++++.+++.|.+.|+.+
T Consensus       148 ------~--------~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~  205 (305)
T d2bmfa2         148 ------F--------PQSNAPIMDEEREIPERSWNS---G-----HEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKV  205 (305)
T ss_dssp             ------S--------CCCSSCEEEEECCCCCSCCSS---C-----CHHHHSSCSCEEEECSCHHHHHHHHHHHHHHTCCC
T ss_pred             ------e--------cccCCcceEEEEeccHHHHHH---H-----HHHHHhhCCCEEEEeccHHHHHHHHHHHHhCCCCE
Confidence                  0        000011111111111111100   0     01112246789999999999999999999999999


Q ss_pred             EEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEE----------EeC----------CCCCHHHHHHH
Q 036378          450 KSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI----------HYS----------LPESLEEYVQE  509 (815)
Q Consensus       450 ~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI----------~~d----------~P~s~~~y~Qr  509 (815)
                      ..+||++....+    ..|.+|..+++|||+++++|+|+ +++.||          +++          .|.|.++|+||
T Consensus       206 ~~l~~~~~~~~~----~~~~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr  280 (305)
T d2bmfa2         206 IQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQR  280 (305)
T ss_dssp             EECCTTCHHHHG----GGGGTSCCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHH
T ss_pred             EEeCCcChHHHH----hhhhccchhhhhhhHHHHhcCCC-CccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhh
Confidence            999999965544    46789999999999999999999 455554          333          46689999999


Q ss_pred             HcccCCCCCCceEEEEeccc
Q 036378          510 IGRAGRDGRLSYCHLFLDDI  529 (815)
Q Consensus       510 ~GRaGR~g~~g~~i~l~~~~  529 (815)
                      +||+||+|+.+...++|..+
T Consensus       281 ~GR~GR~~~~~~~~~~~~~~  300 (305)
T d2bmfa2         281 RGRVGRNPKNENDQYIYMGE  300 (305)
T ss_dssp             HTTSSCSSSCCCEEEEECSC
T ss_pred             hcCcCcCCCCceEEEEECCC
Confidence            99999999999888887654
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure